Multiple sequence alignment - TraesCS6B01G473800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G473800 chr6B 100.000 2531 0 0 1 2531 720804007 720806537 0.000000e+00 4674.0
1 TraesCS6B01G473800 chr6B 93.827 81 4 1 652 731 10114883 10114963 1.230000e-23 121.0
2 TraesCS6B01G473800 chr6B 96.721 61 2 0 2471 2531 562559538 562559598 4.450000e-18 102.0
3 TraesCS6B01G473800 chr4A 99.068 966 7 1 729 1694 743681079 743680116 0.000000e+00 1733.0
4 TraesCS6B01G473800 chr4A 94.286 385 22 0 2018 2402 743679379 743678995 7.800000e-165 590.0
5 TraesCS6B01G473800 chr4A 95.161 62 3 0 2470 2531 557549785 557549846 5.760000e-17 99.0
6 TraesCS6B01G473800 chr4A 95.161 62 3 0 2470 2531 576122277 576122216 5.760000e-17 99.0
7 TraesCS6B01G473800 chrUn 96.239 1037 10 3 726 1738 162315464 162316495 0.000000e+00 1672.0
8 TraesCS6B01G473800 chrUn 93.664 584 30 7 1737 2315 162316589 162317170 0.000000e+00 867.0
9 TraesCS6B01G473800 chr2A 97.489 876 12 4 866 1738 62222522 62221654 0.000000e+00 1487.0
10 TraesCS6B01G473800 chr2A 93.230 709 35 8 1737 2433 62221566 62220859 0.000000e+00 1031.0
11 TraesCS6B01G473800 chr2A 100.000 99 0 0 729 827 62230500 62230402 1.550000e-42 183.0
12 TraesCS6B01G473800 chr2A 93.590 78 5 0 652 729 101835549 101835626 1.590000e-22 117.0
13 TraesCS6B01G473800 chr2A 100.000 36 0 0 828 863 62222584 62222549 1.620000e-07 67.6
14 TraesCS6B01G473800 chr3B 94.778 632 20 2 1 619 13957997 13958628 0.000000e+00 972.0
15 TraesCS6B01G473800 chr3B 92.369 629 35 2 5 620 783797228 783797856 0.000000e+00 883.0
16 TraesCS6B01G473800 chr3B 93.590 78 5 0 652 729 690013656 690013733 1.590000e-22 117.0
17 TraesCS6B01G473800 chr7B 93.681 633 27 2 1 620 58649205 58648573 0.000000e+00 935.0
18 TraesCS6B01G473800 chr7B 92.593 81 5 1 652 732 387339566 387339487 5.720000e-22 115.0
19 TraesCS6B01G473800 chr1B 92.528 629 29 5 5 620 104732682 104733305 0.000000e+00 885.0
20 TraesCS6B01G473800 chr1B 92.190 589 33 6 5 580 166610943 166610355 0.000000e+00 821.0
21 TraesCS6B01G473800 chr4B 91.574 629 40 2 5 620 626354005 626353377 0.000000e+00 856.0
22 TraesCS6B01G473800 chr1A 88.889 612 48 6 1 593 541452038 541451428 0.000000e+00 736.0
23 TraesCS6B01G473800 chr1A 96.774 62 2 0 2470 2531 555288625 555288564 1.240000e-18 104.0
24 TraesCS6B01G473800 chr1A 95.161 62 3 0 2470 2531 279202833 279202772 5.760000e-17 99.0
25 TraesCS6B01G473800 chr6D 87.264 636 63 6 1 619 433675801 433676435 0.000000e+00 710.0
26 TraesCS6B01G473800 chr6D 93.590 78 5 0 652 729 470319913 470319990 1.590000e-22 117.0
27 TraesCS6B01G473800 chr6D 96.364 55 2 0 2477 2531 435974456 435974402 9.640000e-15 91.6
28 TraesCS6B01G473800 chr7D 86.913 596 60 6 4 582 14680451 14679857 0.000000e+00 652.0
29 TraesCS6B01G473800 chr7D 93.590 78 5 0 652 729 456622513 456622590 1.590000e-22 117.0
30 TraesCS6B01G473800 chr6A 83.802 605 81 5 35 623 463026968 463027571 2.200000e-155 558.0
31 TraesCS6B01G473800 chr2B 94.872 78 4 0 652 729 638522914 638522837 3.420000e-24 122.0
32 TraesCS6B01G473800 chr3D 93.590 78 5 0 652 729 489278244 489278167 1.590000e-22 117.0
33 TraesCS6B01G473800 chr3D 93.506 77 5 0 652 728 563963015 563962939 5.720000e-22 115.0
34 TraesCS6B01G473800 chr7A 95.161 62 3 0 2470 2531 165853898 165853959 5.760000e-17 99.0
35 TraesCS6B01G473800 chr5A 95.161 62 3 0 2470 2531 318592153 318592092 5.760000e-17 99.0
36 TraesCS6B01G473800 chr1D 92.754 69 3 2 2465 2531 247521079 247521011 5.760000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G473800 chr6B 720804007 720806537 2530 False 4674.000000 4674 100.000000 1 2531 1 chr6B.!!$F3 2530
1 TraesCS6B01G473800 chr4A 743678995 743681079 2084 True 1161.500000 1733 96.677000 729 2402 2 chr4A.!!$R2 1673
2 TraesCS6B01G473800 chrUn 162315464 162317170 1706 False 1269.500000 1672 94.951500 726 2315 2 chrUn.!!$F1 1589
3 TraesCS6B01G473800 chr2A 62220859 62222584 1725 True 861.866667 1487 96.906333 828 2433 3 chr2A.!!$R2 1605
4 TraesCS6B01G473800 chr3B 13957997 13958628 631 False 972.000000 972 94.778000 1 619 1 chr3B.!!$F1 618
5 TraesCS6B01G473800 chr3B 783797228 783797856 628 False 883.000000 883 92.369000 5 620 1 chr3B.!!$F3 615
6 TraesCS6B01G473800 chr7B 58648573 58649205 632 True 935.000000 935 93.681000 1 620 1 chr7B.!!$R1 619
7 TraesCS6B01G473800 chr1B 104732682 104733305 623 False 885.000000 885 92.528000 5 620 1 chr1B.!!$F1 615
8 TraesCS6B01G473800 chr1B 166610355 166610943 588 True 821.000000 821 92.190000 5 580 1 chr1B.!!$R1 575
9 TraesCS6B01G473800 chr4B 626353377 626354005 628 True 856.000000 856 91.574000 5 620 1 chr4B.!!$R1 615
10 TraesCS6B01G473800 chr1A 541451428 541452038 610 True 736.000000 736 88.889000 1 593 1 chr1A.!!$R2 592
11 TraesCS6B01G473800 chr6D 433675801 433676435 634 False 710.000000 710 87.264000 1 619 1 chr6D.!!$F1 618
12 TraesCS6B01G473800 chr7D 14679857 14680451 594 True 652.000000 652 86.913000 4 582 1 chr7D.!!$R1 578
13 TraesCS6B01G473800 chr6A 463026968 463027571 603 False 558.000000 558 83.802000 35 623 1 chr6A.!!$F1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 660 0.035881 CATCACTGGTGTCTGCAGGT 59.964 55.0 15.13 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2437 2913 0.323999 AATGGAGGCATGCAAGCAGA 60.324 50.0 21.36 0.0 35.83 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 1.945354 GAGATCCTTCACGCGTGGGA 61.945 60.000 36.41 33.26 0.00 4.37
322 324 1.080093 CACGAGGCTTCTGGCGTTA 60.080 57.895 0.00 0.00 44.18 3.18
627 652 4.701663 CGAAGCCATCACTGGTGT 57.298 55.556 0.53 0.00 45.10 4.16
628 653 2.460330 CGAAGCCATCACTGGTGTC 58.540 57.895 0.53 0.00 45.10 3.67
629 654 0.036952 CGAAGCCATCACTGGTGTCT 60.037 55.000 0.53 0.00 45.10 3.41
630 655 1.446907 GAAGCCATCACTGGTGTCTG 58.553 55.000 0.53 0.99 45.10 3.51
631 656 0.607489 AAGCCATCACTGGTGTCTGC 60.607 55.000 0.53 2.67 45.10 4.26
632 657 1.302752 GCCATCACTGGTGTCTGCA 60.303 57.895 0.53 0.00 45.10 4.41
633 658 1.303799 GCCATCACTGGTGTCTGCAG 61.304 60.000 7.63 7.63 45.10 4.41
634 659 0.675837 CCATCACTGGTGTCTGCAGG 60.676 60.000 15.13 0.00 37.79 4.85
635 660 0.035881 CATCACTGGTGTCTGCAGGT 59.964 55.000 15.13 0.00 0.00 4.00
636 661 0.322975 ATCACTGGTGTCTGCAGGTC 59.677 55.000 15.13 8.33 0.00 3.85
637 662 1.048160 TCACTGGTGTCTGCAGGTCA 61.048 55.000 15.13 10.99 0.00 4.02
638 663 0.602106 CACTGGTGTCTGCAGGTCAG 60.602 60.000 15.13 17.05 44.21 3.51
639 664 1.050988 ACTGGTGTCTGCAGGTCAGT 61.051 55.000 15.13 17.64 43.32 3.41
640 665 0.107456 CTGGTGTCTGCAGGTCAGTT 59.893 55.000 15.13 0.00 43.32 3.16
641 666 1.344438 CTGGTGTCTGCAGGTCAGTTA 59.656 52.381 15.13 2.91 43.32 2.24
642 667 1.344438 TGGTGTCTGCAGGTCAGTTAG 59.656 52.381 15.13 0.00 43.32 2.34
643 668 1.344763 GGTGTCTGCAGGTCAGTTAGT 59.655 52.381 15.13 0.00 43.32 2.24
644 669 2.408050 GTGTCTGCAGGTCAGTTAGTG 58.592 52.381 15.13 0.00 43.32 2.74
645 670 2.035961 GTGTCTGCAGGTCAGTTAGTGA 59.964 50.000 15.13 0.00 43.32 3.41
656 681 4.882842 TCAGTTAGTGACACCATGCTAA 57.117 40.909 0.84 0.00 0.00 3.09
657 682 5.222079 TCAGTTAGTGACACCATGCTAAA 57.778 39.130 0.84 0.00 0.00 1.85
658 683 5.616270 TCAGTTAGTGACACCATGCTAAAA 58.384 37.500 0.84 0.00 0.00 1.52
659 684 6.237901 TCAGTTAGTGACACCATGCTAAAAT 58.762 36.000 0.84 0.00 0.00 1.82
660 685 6.149308 TCAGTTAGTGACACCATGCTAAAATG 59.851 38.462 0.84 0.00 0.00 2.32
672 697 6.456447 CATGCTAAAATGGACACTGTTTTG 57.544 37.500 0.00 0.00 0.00 2.44
673 698 5.590530 TGCTAAAATGGACACTGTTTTGT 57.409 34.783 0.00 0.00 0.00 2.83
674 699 6.701145 TGCTAAAATGGACACTGTTTTGTA 57.299 33.333 0.00 0.00 0.00 2.41
675 700 7.101652 TGCTAAAATGGACACTGTTTTGTAA 57.898 32.000 0.00 0.00 0.00 2.41
676 701 7.548097 TGCTAAAATGGACACTGTTTTGTAAA 58.452 30.769 0.00 0.00 0.00 2.01
677 702 8.035394 TGCTAAAATGGACACTGTTTTGTAAAA 58.965 29.630 0.00 0.00 0.00 1.52
678 703 8.874816 GCTAAAATGGACACTGTTTTGTAAAAA 58.125 29.630 0.00 0.00 0.00 1.94
681 706 9.442047 AAAATGGACACTGTTTTGTAAAAATCA 57.558 25.926 0.00 0.00 0.00 2.57
682 707 9.612066 AAATGGACACTGTTTTGTAAAAATCAT 57.388 25.926 0.00 0.00 0.00 2.45
683 708 8.592105 ATGGACACTGTTTTGTAAAAATCATG 57.408 30.769 0.00 0.00 0.00 3.07
684 709 6.983307 TGGACACTGTTTTGTAAAAATCATGG 59.017 34.615 0.00 0.00 0.00 3.66
685 710 7.147828 TGGACACTGTTTTGTAAAAATCATGGA 60.148 33.333 0.00 0.00 0.00 3.41
686 711 7.872483 GGACACTGTTTTGTAAAAATCATGGAT 59.128 33.333 0.00 0.00 0.00 3.41
687 712 9.906660 GACACTGTTTTGTAAAAATCATGGATA 57.093 29.630 0.00 0.00 0.00 2.59
692 717 9.081997 TGTTTTGTAAAAATCATGGATATTCGC 57.918 29.630 0.00 0.00 0.00 4.70
693 718 9.081997 GTTTTGTAAAAATCATGGATATTCGCA 57.918 29.630 0.00 0.00 0.00 5.10
694 719 9.814899 TTTTGTAAAAATCATGGATATTCGCAT 57.185 25.926 0.00 0.00 0.00 4.73
695 720 8.800231 TTGTAAAAATCATGGATATTCGCATG 57.200 30.769 0.00 0.00 0.00 4.06
696 721 8.164058 TGTAAAAATCATGGATATTCGCATGA 57.836 30.769 0.00 0.00 37.95 3.07
697 722 8.628280 TGTAAAAATCATGGATATTCGCATGAA 58.372 29.630 0.00 0.00 37.49 2.57
698 723 9.121517 GTAAAAATCATGGATATTCGCATGAAG 57.878 33.333 0.00 0.00 37.49 3.02
699 724 7.514784 AAAATCATGGATATTCGCATGAAGA 57.485 32.000 0.00 0.00 37.49 2.87
700 725 6.492007 AATCATGGATATTCGCATGAAGAC 57.508 37.500 0.00 0.00 37.49 3.01
701 726 4.318332 TCATGGATATTCGCATGAAGACC 58.682 43.478 0.00 0.00 37.57 3.85
702 727 3.126001 TGGATATTCGCATGAAGACCC 57.874 47.619 0.00 0.00 37.57 4.46
703 728 2.437651 TGGATATTCGCATGAAGACCCA 59.562 45.455 0.00 0.00 37.57 4.51
704 729 3.118075 TGGATATTCGCATGAAGACCCAA 60.118 43.478 0.00 0.00 37.57 4.12
705 730 3.499918 GGATATTCGCATGAAGACCCAAG 59.500 47.826 0.00 0.00 37.57 3.61
706 731 2.787473 ATTCGCATGAAGACCCAAGA 57.213 45.000 0.00 0.00 37.57 3.02
707 732 2.559698 TTCGCATGAAGACCCAAGAA 57.440 45.000 0.00 0.00 0.00 2.52
708 733 2.787473 TCGCATGAAGACCCAAGAAT 57.213 45.000 0.00 0.00 0.00 2.40
709 734 3.904800 TCGCATGAAGACCCAAGAATA 57.095 42.857 0.00 0.00 0.00 1.75
710 735 3.531538 TCGCATGAAGACCCAAGAATAC 58.468 45.455 0.00 0.00 0.00 1.89
711 736 2.614057 CGCATGAAGACCCAAGAATACC 59.386 50.000 0.00 0.00 0.00 2.73
712 737 2.952310 GCATGAAGACCCAAGAATACCC 59.048 50.000 0.00 0.00 0.00 3.69
713 738 3.555966 CATGAAGACCCAAGAATACCCC 58.444 50.000 0.00 0.00 0.00 4.95
714 739 2.929301 TGAAGACCCAAGAATACCCCT 58.071 47.619 0.00 0.00 0.00 4.79
715 740 4.083080 TGAAGACCCAAGAATACCCCTA 57.917 45.455 0.00 0.00 0.00 3.53
716 741 4.037927 TGAAGACCCAAGAATACCCCTAG 58.962 47.826 0.00 0.00 0.00 3.02
717 742 2.409570 AGACCCAAGAATACCCCTAGC 58.590 52.381 0.00 0.00 0.00 3.42
718 743 1.070289 GACCCAAGAATACCCCTAGCG 59.930 57.143 0.00 0.00 0.00 4.26
719 744 0.250338 CCCAAGAATACCCCTAGCGC 60.250 60.000 0.00 0.00 0.00 5.92
720 745 0.250338 CCAAGAATACCCCTAGCGCC 60.250 60.000 2.29 0.00 0.00 6.53
721 746 0.600255 CAAGAATACCCCTAGCGCCG 60.600 60.000 2.29 0.00 0.00 6.46
722 747 2.357154 GAATACCCCTAGCGCCGC 60.357 66.667 2.29 0.00 0.00 6.53
723 748 3.878374 GAATACCCCTAGCGCCGCC 62.878 68.421 4.98 0.00 0.00 6.13
1330 1379 4.760047 CCCTGGCCGAGTTCACCG 62.760 72.222 0.00 0.00 0.00 4.94
1386 1435 3.723348 GACGGCTTCAACGTGCCC 61.723 66.667 8.88 0.00 45.68 5.36
1923 2276 4.804420 TCCTCGCCTCCAGCCCAT 62.804 66.667 0.00 0.00 38.78 4.00
1985 2339 1.729276 CCACCGTCGGCGATAACTA 59.271 57.895 12.93 0.00 41.33 2.24
2028 2498 2.654085 CGCGATGCCACGTCGTAT 60.654 61.111 0.00 0.00 40.98 3.06
2097 2567 1.224075 CGCGCAATCTGATTCTCCAT 58.776 50.000 8.75 0.00 0.00 3.41
2207 2678 1.617850 TGAATCAGCCGCCAAATGTTT 59.382 42.857 0.00 0.00 0.00 2.83
2221 2692 6.099341 GCCAAATGTTTTCGGTCAAATCTAT 58.901 36.000 0.00 0.00 0.00 1.98
2428 2904 3.887716 ACTTACTATGTTAGGCCGATCGT 59.112 43.478 15.09 0.00 0.00 3.73
2433 2909 3.530265 ATGTTAGGCCGATCGTGTAAA 57.470 42.857 15.09 0.24 0.00 2.01
2434 2910 3.316071 TGTTAGGCCGATCGTGTAAAA 57.684 42.857 15.09 1.03 0.00 1.52
2435 2911 3.661944 TGTTAGGCCGATCGTGTAAAAA 58.338 40.909 15.09 0.00 0.00 1.94
2436 2912 3.432933 TGTTAGGCCGATCGTGTAAAAAC 59.567 43.478 15.09 10.58 0.00 2.43
2437 2913 2.467566 AGGCCGATCGTGTAAAAACT 57.532 45.000 15.09 0.00 0.00 2.66
2438 2914 2.344025 AGGCCGATCGTGTAAAAACTC 58.656 47.619 15.09 0.00 0.00 3.01
2439 2915 2.028385 AGGCCGATCGTGTAAAAACTCT 60.028 45.455 15.09 0.00 0.00 3.24
2440 2916 2.093783 GGCCGATCGTGTAAAAACTCTG 59.906 50.000 15.09 0.00 0.00 3.35
2441 2917 2.474032 GCCGATCGTGTAAAAACTCTGC 60.474 50.000 15.09 1.25 0.00 4.26
2442 2918 2.993899 CCGATCGTGTAAAAACTCTGCT 59.006 45.455 15.09 0.00 0.00 4.24
2443 2919 3.432252 CCGATCGTGTAAAAACTCTGCTT 59.568 43.478 15.09 0.00 0.00 3.91
2444 2920 4.386230 CGATCGTGTAAAAACTCTGCTTG 58.614 43.478 7.03 0.00 0.00 4.01
2445 2921 3.602390 TCGTGTAAAAACTCTGCTTGC 57.398 42.857 0.00 0.00 0.00 4.01
2446 2922 2.939756 TCGTGTAAAAACTCTGCTTGCA 59.060 40.909 0.00 0.00 0.00 4.08
2447 2923 3.563808 TCGTGTAAAAACTCTGCTTGCAT 59.436 39.130 0.00 0.00 0.00 3.96
2448 2924 3.665409 CGTGTAAAAACTCTGCTTGCATG 59.335 43.478 0.00 0.00 0.00 4.06
2449 2925 3.426525 GTGTAAAAACTCTGCTTGCATGC 59.573 43.478 17.19 17.19 0.00 4.06
2450 2926 2.159327 AAAAACTCTGCTTGCATGCC 57.841 45.000 20.65 0.00 0.00 4.40
2451 2927 1.335145 AAAACTCTGCTTGCATGCCT 58.665 45.000 20.65 0.00 0.00 4.75
2452 2928 0.886563 AAACTCTGCTTGCATGCCTC 59.113 50.000 20.65 4.56 0.00 4.70
2453 2929 0.964358 AACTCTGCTTGCATGCCTCC 60.964 55.000 20.65 3.32 0.00 4.30
2454 2930 1.378119 CTCTGCTTGCATGCCTCCA 60.378 57.895 20.65 8.11 0.00 3.86
2455 2931 0.752009 CTCTGCTTGCATGCCTCCAT 60.752 55.000 20.65 0.00 0.00 3.41
2456 2932 0.323999 TCTGCTTGCATGCCTCCATT 60.324 50.000 20.65 0.00 0.00 3.16
2457 2933 0.535335 CTGCTTGCATGCCTCCATTT 59.465 50.000 20.65 0.00 0.00 2.32
2458 2934 0.978151 TGCTTGCATGCCTCCATTTT 59.022 45.000 20.65 0.00 0.00 1.82
2459 2935 2.166870 CTGCTTGCATGCCTCCATTTTA 59.833 45.455 20.65 0.00 0.00 1.52
2460 2936 2.767394 TGCTTGCATGCCTCCATTTTAT 59.233 40.909 20.65 0.00 0.00 1.40
2461 2937 3.181473 TGCTTGCATGCCTCCATTTTATC 60.181 43.478 20.65 0.00 0.00 1.75
2462 2938 3.635331 CTTGCATGCCTCCATTTTATCG 58.365 45.455 16.68 0.00 0.00 2.92
2463 2939 1.337703 TGCATGCCTCCATTTTATCGC 59.662 47.619 16.68 0.00 0.00 4.58
2464 2940 1.610522 GCATGCCTCCATTTTATCGCT 59.389 47.619 6.36 0.00 0.00 4.93
2465 2941 2.813754 GCATGCCTCCATTTTATCGCTA 59.186 45.455 6.36 0.00 0.00 4.26
2466 2942 3.120060 GCATGCCTCCATTTTATCGCTAG 60.120 47.826 6.36 0.00 0.00 3.42
2467 2943 3.838244 TGCCTCCATTTTATCGCTAGT 57.162 42.857 0.00 0.00 0.00 2.57
2468 2944 3.466836 TGCCTCCATTTTATCGCTAGTG 58.533 45.455 0.00 0.00 0.00 2.74
2469 2945 2.224314 GCCTCCATTTTATCGCTAGTGC 59.776 50.000 0.00 0.00 0.00 4.40
2470 2946 3.733337 CCTCCATTTTATCGCTAGTGCT 58.267 45.455 0.00 0.00 36.97 4.40
2471 2947 4.799586 GCCTCCATTTTATCGCTAGTGCTA 60.800 45.833 0.00 0.00 36.97 3.49
2472 2948 4.686554 CCTCCATTTTATCGCTAGTGCTAC 59.313 45.833 0.00 0.00 36.97 3.58
2473 2949 5.509840 CCTCCATTTTATCGCTAGTGCTACT 60.510 44.000 0.00 0.00 36.97 2.57
2474 2950 5.914033 TCCATTTTATCGCTAGTGCTACTT 58.086 37.500 0.00 0.00 36.97 2.24
2475 2951 6.346096 TCCATTTTATCGCTAGTGCTACTTT 58.654 36.000 0.00 0.00 36.97 2.66
2476 2952 6.257849 TCCATTTTATCGCTAGTGCTACTTTG 59.742 38.462 0.00 0.00 36.97 2.77
2477 2953 6.037172 CCATTTTATCGCTAGTGCTACTTTGT 59.963 38.462 0.00 0.00 36.97 2.83
2478 2954 7.223971 CCATTTTATCGCTAGTGCTACTTTGTA 59.776 37.037 0.00 0.00 36.97 2.41
2479 2955 7.515957 TTTTATCGCTAGTGCTACTTTGTAC 57.484 36.000 0.00 0.00 36.97 2.90
2480 2956 4.985538 ATCGCTAGTGCTACTTTGTACT 57.014 40.909 0.00 0.00 36.82 2.73
2481 2957 4.352600 TCGCTAGTGCTACTTTGTACTC 57.647 45.455 0.00 0.00 34.81 2.59
2482 2958 3.128242 TCGCTAGTGCTACTTTGTACTCC 59.872 47.826 0.00 0.00 34.81 3.85
2483 2959 3.734293 CGCTAGTGCTACTTTGTACTCCC 60.734 52.174 0.00 0.00 34.81 4.30
2484 2960 3.447944 GCTAGTGCTACTTTGTACTCCCT 59.552 47.826 0.00 0.00 34.81 4.20
2485 2961 4.440387 GCTAGTGCTACTTTGTACTCCCTC 60.440 50.000 0.00 0.00 34.81 4.30
2486 2962 2.832733 AGTGCTACTTTGTACTCCCTCC 59.167 50.000 0.00 0.00 0.00 4.30
2487 2963 1.822990 TGCTACTTTGTACTCCCTCCG 59.177 52.381 0.00 0.00 0.00 4.63
2488 2964 1.823610 GCTACTTTGTACTCCCTCCGT 59.176 52.381 0.00 0.00 0.00 4.69
2489 2965 2.233186 GCTACTTTGTACTCCCTCCGTT 59.767 50.000 0.00 0.00 0.00 4.44
2490 2966 3.675502 GCTACTTTGTACTCCCTCCGTTC 60.676 52.174 0.00 0.00 0.00 3.95
2491 2967 1.622312 ACTTTGTACTCCCTCCGTTCC 59.378 52.381 0.00 0.00 0.00 3.62
2492 2968 1.621814 CTTTGTACTCCCTCCGTTCCA 59.378 52.381 0.00 0.00 0.00 3.53
2493 2969 1.719529 TTGTACTCCCTCCGTTCCAA 58.280 50.000 0.00 0.00 0.00 3.53
2494 2970 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
2495 2971 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
2496 2972 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
2497 2973 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
2498 2974 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2499 2975 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2500 2976 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2501 2977 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2502 2978 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2503 2979 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2504 2980 3.581755 CTCCGTTCCAAATTACTCGTCA 58.418 45.455 0.00 0.00 0.00 4.35
2505 2981 3.319755 TCCGTTCCAAATTACTCGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
2506 2982 3.061322 CCGTTCCAAATTACTCGTCACA 58.939 45.455 0.00 0.00 0.00 3.58
2507 2983 3.495377 CCGTTCCAAATTACTCGTCACAA 59.505 43.478 0.00 0.00 0.00 3.33
2508 2984 4.024725 CCGTTCCAAATTACTCGTCACAAA 60.025 41.667 0.00 0.00 0.00 2.83
2509 2985 5.503498 CGTTCCAAATTACTCGTCACAAAA 58.497 37.500 0.00 0.00 0.00 2.44
2510 2986 5.966503 CGTTCCAAATTACTCGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
2511 2987 6.635239 CGTTCCAAATTACTCGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
2512 2988 7.357206 CGTTCCAAATTACTCGTCACAAAAATG 60.357 37.037 0.00 0.00 0.00 2.32
2513 2989 6.442952 TCCAAATTACTCGTCACAAAAATGG 58.557 36.000 0.00 0.00 0.00 3.16
2514 2990 6.263392 TCCAAATTACTCGTCACAAAAATGGA 59.737 34.615 0.00 0.00 0.00 3.41
2515 2991 7.040062 TCCAAATTACTCGTCACAAAAATGGAT 60.040 33.333 0.00 0.00 0.00 3.41
2516 2992 7.062138 CCAAATTACTCGTCACAAAAATGGATG 59.938 37.037 0.00 0.00 0.00 3.51
2517 2993 6.817765 ATTACTCGTCACAAAAATGGATGT 57.182 33.333 0.00 0.00 0.00 3.06
2518 2994 7.915293 ATTACTCGTCACAAAAATGGATGTA 57.085 32.000 0.00 0.00 0.00 2.29
2519 2995 7.915293 TTACTCGTCACAAAAATGGATGTAT 57.085 32.000 0.00 0.00 0.00 2.29
2520 2996 6.422776 ACTCGTCACAAAAATGGATGTATC 57.577 37.500 0.00 0.00 0.00 2.24
2521 2997 6.173339 ACTCGTCACAAAAATGGATGTATCT 58.827 36.000 0.00 0.00 0.00 1.98
2522 2998 7.327975 ACTCGTCACAAAAATGGATGTATCTA 58.672 34.615 0.00 0.00 0.00 1.98
2523 2999 7.492669 ACTCGTCACAAAAATGGATGTATCTAG 59.507 37.037 0.00 0.00 0.00 2.43
2524 3000 7.552459 TCGTCACAAAAATGGATGTATCTAGA 58.448 34.615 0.00 0.00 0.00 2.43
2525 3001 8.038351 TCGTCACAAAAATGGATGTATCTAGAA 58.962 33.333 0.00 0.00 0.00 2.10
2526 3002 8.116753 CGTCACAAAAATGGATGTATCTAGAAC 58.883 37.037 0.00 0.00 0.00 3.01
2527 3003 9.167311 GTCACAAAAATGGATGTATCTAGAACT 57.833 33.333 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.816087 GCAGAACAATCTCAGAGGCAAA 59.184 45.455 0.00 0.00 32.03 3.68
93 94 0.814010 GGTGTTGTTGTGGAGACGCT 60.814 55.000 0.00 0.00 42.82 5.07
317 319 2.311124 AGGCAGGAACACTATAACGC 57.689 50.000 0.00 0.00 0.00 4.84
322 324 4.576330 AAGCTTAAGGCAGGAACACTAT 57.424 40.909 0.00 0.00 44.79 2.12
620 645 3.970332 TGACCTGCAGACACCAGT 58.030 55.556 17.39 2.44 0.00 4.00
635 660 4.882842 TTAGCATGGTGTCACTAACTGA 57.117 40.909 7.89 0.00 0.00 3.41
636 661 5.940192 TTTTAGCATGGTGTCACTAACTG 57.060 39.130 7.89 0.00 0.00 3.16
637 662 5.415701 CCATTTTAGCATGGTGTCACTAACT 59.584 40.000 7.89 1.98 39.26 2.24
638 663 5.414454 TCCATTTTAGCATGGTGTCACTAAC 59.586 40.000 7.89 0.00 43.94 2.34
639 664 5.414454 GTCCATTTTAGCATGGTGTCACTAA 59.586 40.000 7.89 0.00 43.94 2.24
640 665 4.941263 GTCCATTTTAGCATGGTGTCACTA 59.059 41.667 7.89 0.00 43.94 2.74
641 666 3.758554 GTCCATTTTAGCATGGTGTCACT 59.241 43.478 7.89 0.00 43.94 3.41
642 667 3.505680 TGTCCATTTTAGCATGGTGTCAC 59.494 43.478 7.89 0.00 43.94 3.67
643 668 3.505680 GTGTCCATTTTAGCATGGTGTCA 59.494 43.478 7.89 0.00 43.94 3.58
644 669 3.758554 AGTGTCCATTTTAGCATGGTGTC 59.241 43.478 7.89 0.00 43.94 3.67
645 670 3.507233 CAGTGTCCATTTTAGCATGGTGT 59.493 43.478 7.89 0.00 43.94 4.16
646 671 3.507233 ACAGTGTCCATTTTAGCATGGTG 59.493 43.478 7.89 0.00 43.94 4.17
647 672 3.766545 ACAGTGTCCATTTTAGCATGGT 58.233 40.909 1.62 1.62 43.94 3.55
648 673 4.789012 AACAGTGTCCATTTTAGCATGG 57.211 40.909 0.00 0.00 44.80 3.66
649 674 5.984926 ACAAAACAGTGTCCATTTTAGCATG 59.015 36.000 0.00 0.00 0.00 4.06
650 675 6.160576 ACAAAACAGTGTCCATTTTAGCAT 57.839 33.333 0.00 0.00 0.00 3.79
651 676 5.590530 ACAAAACAGTGTCCATTTTAGCA 57.409 34.783 0.00 0.00 0.00 3.49
652 677 7.995463 TTTACAAAACAGTGTCCATTTTAGC 57.005 32.000 0.00 0.00 32.75 3.09
655 680 9.442047 TGATTTTTACAAAACAGTGTCCATTTT 57.558 25.926 0.00 0.00 32.75 1.82
656 681 9.612066 ATGATTTTTACAAAACAGTGTCCATTT 57.388 25.926 0.00 0.00 29.06 2.32
657 682 9.044150 CATGATTTTTACAAAACAGTGTCCATT 57.956 29.630 0.00 0.00 29.06 3.16
658 683 7.656948 CCATGATTTTTACAAAACAGTGTCCAT 59.343 33.333 0.00 0.00 29.06 3.41
659 684 6.983307 CCATGATTTTTACAAAACAGTGTCCA 59.017 34.615 0.00 0.00 29.06 4.02
660 685 7.206687 TCCATGATTTTTACAAAACAGTGTCC 58.793 34.615 0.00 0.00 29.06 4.02
661 686 8.816640 ATCCATGATTTTTACAAAACAGTGTC 57.183 30.769 0.00 0.00 29.06 3.67
666 691 9.081997 GCGAATATCCATGATTTTTACAAAACA 57.918 29.630 0.00 0.00 0.00 2.83
667 692 9.081997 TGCGAATATCCATGATTTTTACAAAAC 57.918 29.630 0.00 0.00 0.00 2.43
668 693 9.814899 ATGCGAATATCCATGATTTTTACAAAA 57.185 25.926 0.00 0.00 0.00 2.44
669 694 9.247126 CATGCGAATATCCATGATTTTTACAAA 57.753 29.630 0.00 0.00 40.92 2.83
670 695 8.628280 TCATGCGAATATCCATGATTTTTACAA 58.372 29.630 0.00 0.00 41.94 2.41
671 696 8.164058 TCATGCGAATATCCATGATTTTTACA 57.836 30.769 0.00 0.00 41.94 2.41
672 697 9.121517 CTTCATGCGAATATCCATGATTTTTAC 57.878 33.333 11.92 0.00 45.01 2.01
673 698 9.065798 TCTTCATGCGAATATCCATGATTTTTA 57.934 29.630 11.92 1.07 45.01 1.52
674 699 7.864379 GTCTTCATGCGAATATCCATGATTTTT 59.136 33.333 11.92 0.00 45.01 1.94
675 700 7.365741 GTCTTCATGCGAATATCCATGATTTT 58.634 34.615 11.92 0.00 45.01 1.82
676 701 6.072286 GGTCTTCATGCGAATATCCATGATTT 60.072 38.462 11.92 0.00 45.01 2.17
677 702 5.413833 GGTCTTCATGCGAATATCCATGATT 59.586 40.000 11.92 0.00 45.01 2.57
678 703 4.940046 GGTCTTCATGCGAATATCCATGAT 59.060 41.667 11.92 0.00 45.01 2.45
679 704 4.318332 GGTCTTCATGCGAATATCCATGA 58.682 43.478 0.00 8.68 44.28 3.07
680 705 3.438087 GGGTCTTCATGCGAATATCCATG 59.562 47.826 0.00 0.00 40.05 3.66
681 706 3.072915 TGGGTCTTCATGCGAATATCCAT 59.927 43.478 0.00 0.00 34.47 3.41
682 707 2.437651 TGGGTCTTCATGCGAATATCCA 59.562 45.455 0.00 0.00 36.44 3.41
683 708 3.126001 TGGGTCTTCATGCGAATATCC 57.874 47.619 0.00 0.00 30.77 2.59
684 709 4.380531 TCTTGGGTCTTCATGCGAATATC 58.619 43.478 0.00 0.00 0.00 1.63
685 710 4.422073 TCTTGGGTCTTCATGCGAATAT 57.578 40.909 0.00 0.00 0.00 1.28
686 711 3.904800 TCTTGGGTCTTCATGCGAATA 57.095 42.857 0.00 0.00 0.00 1.75
687 712 2.787473 TCTTGGGTCTTCATGCGAAT 57.213 45.000 0.00 0.00 0.00 3.34
688 713 2.559698 TTCTTGGGTCTTCATGCGAA 57.440 45.000 0.00 0.00 0.00 4.70
689 714 2.787473 ATTCTTGGGTCTTCATGCGA 57.213 45.000 0.00 0.00 0.00 5.10
690 715 2.614057 GGTATTCTTGGGTCTTCATGCG 59.386 50.000 0.00 0.00 0.00 4.73
691 716 2.952310 GGGTATTCTTGGGTCTTCATGC 59.048 50.000 0.00 0.00 0.00 4.06
692 717 3.203040 AGGGGTATTCTTGGGTCTTCATG 59.797 47.826 0.00 0.00 0.00 3.07
693 718 3.474920 AGGGGTATTCTTGGGTCTTCAT 58.525 45.455 0.00 0.00 0.00 2.57
694 719 2.929301 AGGGGTATTCTTGGGTCTTCA 58.071 47.619 0.00 0.00 0.00 3.02
695 720 3.181453 GCTAGGGGTATTCTTGGGTCTTC 60.181 52.174 0.00 0.00 0.00 2.87
696 721 2.778270 GCTAGGGGTATTCTTGGGTCTT 59.222 50.000 0.00 0.00 0.00 3.01
697 722 2.409570 GCTAGGGGTATTCTTGGGTCT 58.590 52.381 0.00 0.00 0.00 3.85
698 723 1.070289 CGCTAGGGGTATTCTTGGGTC 59.930 57.143 0.00 0.00 0.00 4.46
699 724 1.129058 CGCTAGGGGTATTCTTGGGT 58.871 55.000 0.00 0.00 0.00 4.51
700 725 0.250338 GCGCTAGGGGTATTCTTGGG 60.250 60.000 9.09 0.00 0.00 4.12
701 726 0.250338 GGCGCTAGGGGTATTCTTGG 60.250 60.000 7.64 0.00 0.00 3.61
702 727 0.600255 CGGCGCTAGGGGTATTCTTG 60.600 60.000 7.64 0.00 0.00 3.02
703 728 1.746517 CGGCGCTAGGGGTATTCTT 59.253 57.895 7.64 0.00 0.00 2.52
704 729 2.868986 GCGGCGCTAGGGGTATTCT 61.869 63.158 26.86 0.00 0.00 2.40
705 730 2.357154 GCGGCGCTAGGGGTATTC 60.357 66.667 26.86 0.00 0.00 1.75
706 731 3.937447 GGCGGCGCTAGGGGTATT 61.937 66.667 32.30 0.00 0.00 1.89
720 745 4.118995 TACGTACGTGCAGGGGCG 62.119 66.667 30.25 18.42 45.35 6.13
721 746 2.507769 GTACGTACGTGCAGGGGC 60.508 66.667 30.25 8.02 41.68 5.80
722 747 2.202518 CGTACGTACGTGCAGGGG 60.203 66.667 33.95 14.52 44.13 4.79
1350 1399 3.602718 CGTCGATGACAGAGATGTCGTAG 60.603 52.174 0.00 4.11 41.43 3.51
1386 1435 1.817357 TGCTGCAGGAGAATGACAAG 58.183 50.000 17.12 0.00 0.00 3.16
1646 1696 2.811431 CACGGACAGCCTTATTTTCACA 59.189 45.455 0.00 0.00 0.00 3.58
1893 2246 4.516195 GAGGAGGCCGCGGAAGAC 62.516 72.222 33.48 16.01 0.00 3.01
1906 2259 4.804420 ATGGGCTGGAGGCGAGGA 62.804 66.667 0.00 0.00 42.94 3.71
1985 2339 1.816259 CACCACGTTGTCGGTTGGT 60.816 57.895 0.00 0.00 43.76 3.67
2015 2369 2.279252 GGCGATACGACGTGGCAT 60.279 61.111 11.56 0.00 35.59 4.40
2016 2370 4.501714 GGGCGATACGACGTGGCA 62.502 66.667 11.56 0.00 34.63 4.92
2097 2567 0.613260 CTGGTGGGAACTCGGATTGA 59.387 55.000 0.00 0.00 0.00 2.57
2207 2678 7.837202 AAATACGAACATAGATTTGACCGAA 57.163 32.000 0.00 0.00 0.00 4.30
2428 2904 3.552684 GGCATGCAAGCAGAGTTTTTACA 60.553 43.478 21.36 0.00 35.83 2.41
2433 2909 0.886563 GAGGCATGCAAGCAGAGTTT 59.113 50.000 21.36 0.00 35.83 2.66
2434 2910 0.964358 GGAGGCATGCAAGCAGAGTT 60.964 55.000 21.36 0.00 35.83 3.01
2435 2911 1.378250 GGAGGCATGCAAGCAGAGT 60.378 57.895 21.36 0.00 35.83 3.24
2436 2912 0.752009 ATGGAGGCATGCAAGCAGAG 60.752 55.000 21.36 0.00 35.83 3.35
2437 2913 0.323999 AATGGAGGCATGCAAGCAGA 60.324 50.000 21.36 0.00 35.83 4.26
2438 2914 0.535335 AAATGGAGGCATGCAAGCAG 59.465 50.000 21.36 0.00 35.83 4.24
2439 2915 0.978151 AAAATGGAGGCATGCAAGCA 59.022 45.000 21.36 0.00 35.83 3.91
2440 2916 2.965572 TAAAATGGAGGCATGCAAGC 57.034 45.000 21.36 5.09 0.00 4.01
2441 2917 3.635331 CGATAAAATGGAGGCATGCAAG 58.365 45.455 21.36 0.00 0.00 4.01
2442 2918 2.223782 GCGATAAAATGGAGGCATGCAA 60.224 45.455 21.36 1.71 0.00 4.08
2443 2919 1.337703 GCGATAAAATGGAGGCATGCA 59.662 47.619 21.36 0.00 0.00 3.96
2444 2920 1.610522 AGCGATAAAATGGAGGCATGC 59.389 47.619 9.90 9.90 0.00 4.06
2445 2921 4.067896 ACTAGCGATAAAATGGAGGCATG 58.932 43.478 0.00 0.00 0.00 4.06
2446 2922 4.067896 CACTAGCGATAAAATGGAGGCAT 58.932 43.478 0.00 0.00 0.00 4.40
2447 2923 3.466836 CACTAGCGATAAAATGGAGGCA 58.533 45.455 0.00 0.00 0.00 4.75
2448 2924 2.224314 GCACTAGCGATAAAATGGAGGC 59.776 50.000 0.00 0.00 0.00 4.70
2462 2938 3.447944 AGGGAGTACAAAGTAGCACTAGC 59.552 47.826 0.00 0.00 42.56 3.42
2463 2939 4.098196 GGAGGGAGTACAAAGTAGCACTAG 59.902 50.000 0.00 0.00 0.00 2.57
2464 2940 4.021916 GGAGGGAGTACAAAGTAGCACTA 58.978 47.826 0.00 0.00 0.00 2.74
2465 2941 2.832733 GGAGGGAGTACAAAGTAGCACT 59.167 50.000 0.00 0.00 0.00 4.40
2466 2942 2.416972 CGGAGGGAGTACAAAGTAGCAC 60.417 54.545 0.00 0.00 0.00 4.40
2467 2943 1.822990 CGGAGGGAGTACAAAGTAGCA 59.177 52.381 0.00 0.00 0.00 3.49
2468 2944 1.823610 ACGGAGGGAGTACAAAGTAGC 59.176 52.381 0.00 0.00 0.00 3.58
2469 2945 3.119209 GGAACGGAGGGAGTACAAAGTAG 60.119 52.174 0.00 0.00 0.00 2.57
2470 2946 2.827921 GGAACGGAGGGAGTACAAAGTA 59.172 50.000 0.00 0.00 0.00 2.24
2471 2947 1.622312 GGAACGGAGGGAGTACAAAGT 59.378 52.381 0.00 0.00 0.00 2.66
2472 2948 1.621814 TGGAACGGAGGGAGTACAAAG 59.378 52.381 0.00 0.00 0.00 2.77
2473 2949 1.719529 TGGAACGGAGGGAGTACAAA 58.280 50.000 0.00 0.00 0.00 2.83
2474 2950 1.719529 TTGGAACGGAGGGAGTACAA 58.280 50.000 0.00 0.00 0.00 2.41
2475 2951 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
2476 2952 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
2477 2953 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2478 2954 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2479 2955 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2480 2956 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2481 2957 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2482 2958 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2483 2959 3.367025 GTGACGAGTAATTTGGAACGGAG 59.633 47.826 0.00 0.00 0.00 4.63
2484 2960 3.243805 TGTGACGAGTAATTTGGAACGGA 60.244 43.478 0.00 0.00 0.00 4.69
2485 2961 3.061322 TGTGACGAGTAATTTGGAACGG 58.939 45.455 0.00 0.00 0.00 4.44
2486 2962 4.718858 TTGTGACGAGTAATTTGGAACG 57.281 40.909 0.00 0.00 0.00 3.95
2487 2963 7.096230 CCATTTTTGTGACGAGTAATTTGGAAC 60.096 37.037 0.00 0.00 0.00 3.62
2488 2964 6.920758 CCATTTTTGTGACGAGTAATTTGGAA 59.079 34.615 0.00 0.00 0.00 3.53
2489 2965 6.263392 TCCATTTTTGTGACGAGTAATTTGGA 59.737 34.615 0.00 0.00 0.00 3.53
2490 2966 6.442952 TCCATTTTTGTGACGAGTAATTTGG 58.557 36.000 0.00 0.00 0.00 3.28
2491 2967 7.594758 ACATCCATTTTTGTGACGAGTAATTTG 59.405 33.333 0.00 0.00 0.00 2.32
2492 2968 7.657336 ACATCCATTTTTGTGACGAGTAATTT 58.343 30.769 0.00 0.00 0.00 1.82
2493 2969 7.214467 ACATCCATTTTTGTGACGAGTAATT 57.786 32.000 0.00 0.00 0.00 1.40
2494 2970 6.817765 ACATCCATTTTTGTGACGAGTAAT 57.182 33.333 0.00 0.00 0.00 1.89
2495 2971 7.822334 AGATACATCCATTTTTGTGACGAGTAA 59.178 33.333 0.00 0.00 0.00 2.24
2496 2972 7.327975 AGATACATCCATTTTTGTGACGAGTA 58.672 34.615 0.00 0.00 0.00 2.59
2497 2973 6.173339 AGATACATCCATTTTTGTGACGAGT 58.827 36.000 0.00 0.00 0.00 4.18
2498 2974 6.668541 AGATACATCCATTTTTGTGACGAG 57.331 37.500 0.00 0.00 0.00 4.18
2499 2975 7.552459 TCTAGATACATCCATTTTTGTGACGA 58.448 34.615 0.00 0.00 0.00 4.20
2500 2976 7.770801 TCTAGATACATCCATTTTTGTGACG 57.229 36.000 0.00 0.00 0.00 4.35
2501 2977 9.167311 AGTTCTAGATACATCCATTTTTGTGAC 57.833 33.333 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.