Multiple sequence alignment - TraesCS6B01G473500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G473500 chr6B 100.000 3272 0 0 1 3272 720563478 720560207 0.000000e+00 6043.0
1 TraesCS6B01G473500 chr6D 96.458 1920 53 6 837 2756 470572958 470574862 0.000000e+00 3155.0
2 TraesCS6B01G473500 chr6D 91.900 642 32 6 991 1632 259534436 259533815 0.000000e+00 880.0
3 TraesCS6B01G473500 chr6D 87.500 760 75 9 1 751 470572236 470572984 0.000000e+00 859.0
4 TraesCS6B01G473500 chr6D 97.378 267 7 0 2861 3127 470602171 470602437 3.850000e-124 455.0
5 TraesCS6B01G473500 chr6D 96.721 61 2 0 3212 3272 470602439 470602499 5.780000e-18 102.0
6 TraesCS6B01G473500 chr6A 96.720 1677 51 2 1080 2756 615430471 615432143 0.000000e+00 2789.0
7 TraesCS6B01G473500 chr6A 99.234 261 2 0 2867 3127 615432924 615433184 3.820000e-129 472.0
8 TraesCS6B01G473500 chr6A 86.898 374 44 4 1 369 615395853 615396226 6.530000e-112 414.0
9 TraesCS6B01G473500 chr6A 96.281 242 8 1 837 1078 615429896 615430136 2.370000e-106 396.0
10 TraesCS6B01G473500 chr6A 91.892 74 6 0 2787 2860 615432465 615432538 1.610000e-18 104.0
11 TraesCS6B01G473500 chr6A 96.721 61 2 0 3212 3272 615433186 615433246 5.780000e-18 102.0
12 TraesCS6B01G473500 chr4D 93.935 643 36 1 991 1633 505757822 505758461 0.000000e+00 968.0
13 TraesCS6B01G473500 chr2B 93.458 642 37 3 991 1632 48285539 48284903 0.000000e+00 948.0
14 TraesCS6B01G473500 chr1B 92.368 642 30 5 991 1632 634899469 634900091 0.000000e+00 896.0
15 TraesCS6B01G473500 chr1B 92.212 642 31 5 991 1632 634830459 634831081 0.000000e+00 891.0
16 TraesCS6B01G473500 chr5B 90.343 642 31 4 991 1632 534252295 534252905 0.000000e+00 813.0
17 TraesCS6B01G473500 chr2D 100.000 28 0 0 1608 1635 645811401 645811374 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G473500 chr6B 720560207 720563478 3271 True 6043.0 6043 100.0000 1 3272 1 chr6B.!!$R1 3271
1 TraesCS6B01G473500 chr6D 470572236 470574862 2626 False 2007.0 3155 91.9790 1 2756 2 chr6D.!!$F1 2755
2 TraesCS6B01G473500 chr6D 259533815 259534436 621 True 880.0 880 91.9000 991 1632 1 chr6D.!!$R1 641
3 TraesCS6B01G473500 chr6A 615429896 615433246 3350 False 772.6 2789 96.1696 837 3272 5 chr6A.!!$F2 2435
4 TraesCS6B01G473500 chr4D 505757822 505758461 639 False 968.0 968 93.9350 991 1633 1 chr4D.!!$F1 642
5 TraesCS6B01G473500 chr2B 48284903 48285539 636 True 948.0 948 93.4580 991 1632 1 chr2B.!!$R1 641
6 TraesCS6B01G473500 chr1B 634899469 634900091 622 False 896.0 896 92.3680 991 1632 1 chr1B.!!$F2 641
7 TraesCS6B01G473500 chr1B 634830459 634831081 622 False 891.0 891 92.2120 991 1632 1 chr1B.!!$F1 641
8 TraesCS6B01G473500 chr5B 534252295 534252905 610 False 813.0 813 90.3430 991 1632 1 chr5B.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 366 0.035343 GTCCCCTACTCAAGTTGGCC 60.035 60.000 2.34 0.0 39.17 5.36 F
767 777 0.165944 CGGTTGATTGACAGTTCGCC 59.834 55.000 0.00 0.0 0.00 5.54 F
783 793 1.202486 TCGCCTTCCTACAATAAGCCG 60.202 52.381 0.00 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1649 1992 0.826715 GCAGGAGACTATGTCTGGCA 59.173 55.0 4.85 0.0 43.53 4.92 R
2104 2447 0.908198 ATCAGACCCTTGACAGCCTC 59.092 55.0 0.00 0.0 0.00 4.70 R
2775 3118 0.625849 AGCCGGACCAAATGATTCCT 59.374 50.0 5.05 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.353323 GGGTGGTTTGATTCGTAGGAC 58.647 52.381 0.00 0.00 0.00 3.85
21 22 2.027469 GGGTGGTTTGATTCGTAGGACT 60.027 50.000 0.00 0.00 0.00 3.85
32 33 3.965379 TCGTAGGACTGCAAACCATAA 57.035 42.857 10.74 0.00 0.00 1.90
33 34 4.274602 TCGTAGGACTGCAAACCATAAA 57.725 40.909 10.74 0.00 0.00 1.40
34 35 4.643463 TCGTAGGACTGCAAACCATAAAA 58.357 39.130 10.74 0.00 0.00 1.52
35 36 5.064558 TCGTAGGACTGCAAACCATAAAAA 58.935 37.500 10.74 0.00 0.00 1.94
78 80 9.499479 AGTTGCACTATATTCCATAAGAGATTG 57.501 33.333 0.00 0.00 0.00 2.67
87 89 6.813293 TTCCATAAGAGATTGTCATCCAGA 57.187 37.500 0.00 0.00 0.00 3.86
104 109 7.554118 GTCATCCAGACCATCTTTGAAAGAATA 59.446 37.037 12.10 0.00 40.15 1.75
106 111 9.565090 CATCCAGACCATCTTTGAAAGAATATA 57.435 33.333 12.10 0.00 41.63 0.86
128 133 3.641648 AGTTTTTCATGTGCACAATCGG 58.358 40.909 25.72 13.72 0.00 4.18
145 150 7.468631 GCACAATCGGTCAAACATCCTTATAAT 60.469 37.037 0.00 0.00 0.00 1.28
150 155 7.335627 TCGGTCAAACATCCTTATAATCTTGT 58.664 34.615 0.00 0.00 0.00 3.16
229 234 5.220873 GGAAATCCTGCGAATTAAAGAGGTC 60.221 44.000 0.00 0.00 0.00 3.85
243 248 4.499037 AAGAGGTCGGTAATTGTTTTGC 57.501 40.909 0.00 0.00 0.00 3.68
248 253 4.522789 AGGTCGGTAATTGTTTTGCTGAAT 59.477 37.500 0.00 0.00 0.00 2.57
250 255 6.027749 GGTCGGTAATTGTTTTGCTGAATAG 58.972 40.000 0.00 0.00 0.00 1.73
268 273 0.601576 AGCCAACATTGTACGCGTCA 60.602 50.000 18.63 11.51 0.00 4.35
276 281 1.141645 TTGTACGCGTCAATGTCACC 58.858 50.000 18.63 0.00 0.00 4.02
281 286 1.421410 CGCGTCAATGTCACCTAGGC 61.421 60.000 9.30 0.00 0.00 3.93
296 301 1.622607 TAGGCCCGTGAACCAGATGG 61.623 60.000 0.00 0.00 42.17 3.51
312 317 2.511600 GGCACGAACCATCCCTCG 60.512 66.667 0.00 0.00 40.87 4.63
317 322 0.395311 ACGAACCATCCCTCGCTCTA 60.395 55.000 0.00 0.00 38.64 2.43
325 330 3.442273 CCATCCCTCGCTCTAATCTCTAC 59.558 52.174 0.00 0.00 0.00 2.59
361 366 0.035343 GTCCCCTACTCAAGTTGGCC 60.035 60.000 2.34 0.00 39.17 5.36
377 382 4.431131 CCTGGCCCGCCATGAACT 62.431 66.667 9.27 0.00 46.15 3.01
382 387 2.046023 CCCGCCATGAACTCTGCA 60.046 61.111 0.00 0.00 0.00 4.41
399 404 1.996786 GCATTCACCCTGTGCCATCG 61.997 60.000 0.00 0.00 32.98 3.84
413 418 1.521457 CATCGTGGACACCCATCCG 60.521 63.158 0.00 0.00 45.68 4.18
432 437 1.490693 GCCACATACCATCACGCTCG 61.491 60.000 0.00 0.00 0.00 5.03
445 450 3.106407 GCTCGCACCGACACACTC 61.106 66.667 0.00 0.00 0.00 3.51
447 452 3.538028 CTCGCACCGACACACTCGT 62.538 63.158 0.00 0.00 41.18 4.18
448 453 2.657296 CGCACCGACACACTCGTT 60.657 61.111 0.00 0.00 41.18 3.85
460 466 0.892755 CACTCGTTGTAGCCCCTACA 59.107 55.000 1.18 1.18 44.00 2.74
462 468 0.892755 CTCGTTGTAGCCCCTACACA 59.107 55.000 4.68 0.00 45.13 3.72
553 559 2.186160 CCTTGCACGCCACAGTTCA 61.186 57.895 0.00 0.00 0.00 3.18
562 568 1.066143 CGCCACAGTTCACCTTCCTAT 60.066 52.381 0.00 0.00 0.00 2.57
571 577 7.011109 CACAGTTCACCTTCCTATAATAAACCG 59.989 40.741 0.00 0.00 0.00 4.44
572 578 7.046033 CAGTTCACCTTCCTATAATAAACCGT 58.954 38.462 0.00 0.00 0.00 4.83
575 585 6.576185 TCACCTTCCTATAATAAACCGTGTC 58.424 40.000 0.00 0.00 0.00 3.67
586 596 1.770294 AACCGTGTCAATGGGTTTGT 58.230 45.000 0.00 0.00 41.07 2.83
588 598 2.933573 ACCGTGTCAATGGGTTTGTTA 58.066 42.857 0.00 0.00 36.70 2.41
607 617 4.202000 TGTTAACGGTGTTTGTCGAGACTA 60.202 41.667 0.26 0.00 0.00 2.59
609 619 4.771590 AACGGTGTTTGTCGAGACTATA 57.228 40.909 4.78 0.00 0.00 1.31
610 620 4.978083 ACGGTGTTTGTCGAGACTATAT 57.022 40.909 4.78 0.00 0.00 0.86
611 621 6.441093 AACGGTGTTTGTCGAGACTATATA 57.559 37.500 4.78 0.00 0.00 0.86
615 625 5.278858 GGTGTTTGTCGAGACTATATAGGGG 60.279 48.000 14.25 0.82 0.00 4.79
616 626 4.831155 TGTTTGTCGAGACTATATAGGGGG 59.169 45.833 14.25 1.14 0.00 5.40
617 627 3.083122 TGTCGAGACTATATAGGGGGC 57.917 52.381 14.25 2.64 0.00 5.80
657 667 7.704789 ATAGTTCGGGTTTATGTAATCGAAC 57.295 36.000 15.58 15.58 45.20 3.95
658 668 4.872124 AGTTCGGGTTTATGTAATCGAACC 59.128 41.667 18.46 0.00 45.54 3.62
659 669 4.468765 TCGGGTTTATGTAATCGAACCA 57.531 40.909 6.46 0.00 41.70 3.67
683 693 2.171341 ACCTCGCCTTCTTTCAGTTC 57.829 50.000 0.00 0.00 0.00 3.01
720 730 4.859304 AAGCTTTGCAGATTGATTGACA 57.141 36.364 0.00 0.00 0.00 3.58
727 737 5.625921 TGCAGATTGATTGACATTTCGAA 57.374 34.783 0.00 0.00 0.00 3.71
729 739 6.031471 TGCAGATTGATTGACATTTCGAATG 58.969 36.000 0.00 2.35 0.00 2.67
730 740 5.457799 GCAGATTGATTGACATTTCGAATGG 59.542 40.000 0.00 0.00 0.00 3.16
731 741 6.678655 GCAGATTGATTGACATTTCGAATGGA 60.679 38.462 0.00 0.00 0.00 3.41
732 742 7.252708 CAGATTGATTGACATTTCGAATGGAA 58.747 34.615 0.00 0.00 0.00 3.53
733 743 7.431376 CAGATTGATTGACATTTCGAATGGAAG 59.569 37.037 0.00 0.00 35.70 3.46
734 744 6.816134 TTGATTGACATTTCGAATGGAAGA 57.184 33.333 0.00 0.00 35.70 2.87
735 745 6.426980 TGATTGACATTTCGAATGGAAGAG 57.573 37.500 0.00 0.00 35.70 2.85
736 746 6.172630 TGATTGACATTTCGAATGGAAGAGA 58.827 36.000 0.00 0.00 35.70 3.10
737 747 5.862924 TTGACATTTCGAATGGAAGAGAC 57.137 39.130 0.00 0.00 35.70 3.36
738 748 4.893608 TGACATTTCGAATGGAAGAGACA 58.106 39.130 0.00 0.00 35.70 3.41
739 749 5.491070 TGACATTTCGAATGGAAGAGACAT 58.509 37.500 0.00 0.00 35.70 3.06
740 750 5.352293 TGACATTTCGAATGGAAGAGACATG 59.648 40.000 0.00 0.00 35.70 3.21
741 751 5.248640 ACATTTCGAATGGAAGAGACATGT 58.751 37.500 0.00 0.00 35.70 3.21
742 752 5.352569 ACATTTCGAATGGAAGAGACATGTC 59.647 40.000 18.47 18.47 35.70 3.06
743 753 3.150848 TCGAATGGAAGAGACATGTCG 57.849 47.619 19.85 5.12 33.91 4.35
744 754 2.159240 TCGAATGGAAGAGACATGTCGG 60.159 50.000 19.85 1.68 33.68 4.79
745 755 2.159240 CGAATGGAAGAGACATGTCGGA 60.159 50.000 19.85 2.51 31.53 4.55
746 756 3.676049 CGAATGGAAGAGACATGTCGGAA 60.676 47.826 19.85 4.88 31.53 4.30
747 757 4.446371 GAATGGAAGAGACATGTCGGAAT 58.554 43.478 19.85 8.07 34.09 3.01
748 758 3.526931 TGGAAGAGACATGTCGGAATC 57.473 47.619 19.85 15.56 34.09 2.52
749 759 2.159240 TGGAAGAGACATGTCGGAATCG 60.159 50.000 19.85 0.00 37.82 3.34
750 760 2.464865 GAAGAGACATGTCGGAATCGG 58.535 52.381 19.85 0.00 36.95 4.18
751 761 1.475403 AGAGACATGTCGGAATCGGT 58.525 50.000 19.85 0.00 36.95 4.69
752 762 1.825474 AGAGACATGTCGGAATCGGTT 59.175 47.619 19.85 0.00 36.95 4.44
753 763 1.927174 GAGACATGTCGGAATCGGTTG 59.073 52.381 19.85 0.00 36.95 3.77
754 764 1.548719 AGACATGTCGGAATCGGTTGA 59.451 47.619 19.85 0.00 36.95 3.18
755 765 2.168521 AGACATGTCGGAATCGGTTGAT 59.831 45.455 19.85 0.00 36.95 2.57
756 766 3.369471 AGACATGTCGGAATCGGTTGATT 60.369 43.478 19.85 0.00 40.02 2.57
757 767 2.677836 ACATGTCGGAATCGGTTGATTG 59.322 45.455 0.00 0.00 44.79 2.67
758 768 2.753055 TGTCGGAATCGGTTGATTGA 57.247 45.000 0.00 0.00 44.79 2.57
759 769 2.343101 TGTCGGAATCGGTTGATTGAC 58.657 47.619 0.00 0.00 44.79 3.18
760 770 2.289133 TGTCGGAATCGGTTGATTGACA 60.289 45.455 6.93 6.93 44.79 3.58
761 771 2.348666 GTCGGAATCGGTTGATTGACAG 59.651 50.000 0.00 0.00 44.79 3.51
762 772 2.028476 TCGGAATCGGTTGATTGACAGT 60.028 45.455 0.00 0.00 44.79 3.55
763 773 2.742053 CGGAATCGGTTGATTGACAGTT 59.258 45.455 0.00 0.00 44.79 3.16
764 774 3.181520 CGGAATCGGTTGATTGACAGTTC 60.182 47.826 0.00 0.00 44.79 3.01
765 775 3.181520 GGAATCGGTTGATTGACAGTTCG 60.182 47.826 0.00 0.00 44.79 3.95
766 776 1.144969 TCGGTTGATTGACAGTTCGC 58.855 50.000 0.00 0.00 0.00 4.70
767 777 0.165944 CGGTTGATTGACAGTTCGCC 59.834 55.000 0.00 0.00 0.00 5.54
768 778 1.523758 GGTTGATTGACAGTTCGCCT 58.476 50.000 0.00 0.00 0.00 5.52
769 779 1.880027 GGTTGATTGACAGTTCGCCTT 59.120 47.619 0.00 0.00 0.00 4.35
770 780 2.095718 GGTTGATTGACAGTTCGCCTTC 60.096 50.000 0.00 0.00 0.00 3.46
771 781 1.808411 TGATTGACAGTTCGCCTTCC 58.192 50.000 0.00 0.00 0.00 3.46
772 782 1.347707 TGATTGACAGTTCGCCTTCCT 59.652 47.619 0.00 0.00 0.00 3.36
773 783 2.565391 TGATTGACAGTTCGCCTTCCTA 59.435 45.455 0.00 0.00 0.00 2.94
774 784 2.450609 TTGACAGTTCGCCTTCCTAC 57.549 50.000 0.00 0.00 0.00 3.18
775 785 1.334160 TGACAGTTCGCCTTCCTACA 58.666 50.000 0.00 0.00 0.00 2.74
776 786 1.689813 TGACAGTTCGCCTTCCTACAA 59.310 47.619 0.00 0.00 0.00 2.41
777 787 2.301870 TGACAGTTCGCCTTCCTACAAT 59.698 45.455 0.00 0.00 0.00 2.71
778 788 3.512329 TGACAGTTCGCCTTCCTACAATA 59.488 43.478 0.00 0.00 0.00 1.90
779 789 4.020928 TGACAGTTCGCCTTCCTACAATAA 60.021 41.667 0.00 0.00 0.00 1.40
780 790 4.504858 ACAGTTCGCCTTCCTACAATAAG 58.495 43.478 0.00 0.00 0.00 1.73
781 791 3.309954 CAGTTCGCCTTCCTACAATAAGC 59.690 47.826 0.00 0.00 0.00 3.09
782 792 2.612672 GTTCGCCTTCCTACAATAAGCC 59.387 50.000 0.00 0.00 0.00 4.35
783 793 1.202486 TCGCCTTCCTACAATAAGCCG 60.202 52.381 0.00 0.00 0.00 5.52
784 794 1.472728 CGCCTTCCTACAATAAGCCGT 60.473 52.381 0.00 0.00 0.00 5.68
785 795 1.940613 GCCTTCCTACAATAAGCCGTG 59.059 52.381 0.00 0.00 0.00 4.94
786 796 2.679930 GCCTTCCTACAATAAGCCGTGT 60.680 50.000 0.00 0.00 0.00 4.49
787 797 3.431207 GCCTTCCTACAATAAGCCGTGTA 60.431 47.826 0.00 0.00 0.00 2.90
788 798 4.761975 CCTTCCTACAATAAGCCGTGTAA 58.238 43.478 0.00 0.00 30.11 2.41
789 799 5.180271 CCTTCCTACAATAAGCCGTGTAAA 58.820 41.667 0.00 0.00 30.11 2.01
790 800 5.820947 CCTTCCTACAATAAGCCGTGTAAAT 59.179 40.000 0.00 0.00 30.11 1.40
791 801 6.987992 CCTTCCTACAATAAGCCGTGTAAATA 59.012 38.462 0.00 0.00 30.11 1.40
792 802 7.170998 CCTTCCTACAATAAGCCGTGTAAATAG 59.829 40.741 0.00 0.00 30.11 1.73
793 803 6.518493 TCCTACAATAAGCCGTGTAAATAGG 58.482 40.000 0.00 0.00 30.11 2.57
794 804 6.098695 TCCTACAATAAGCCGTGTAAATAGGT 59.901 38.462 0.00 0.00 30.11 3.08
795 805 6.764560 CCTACAATAAGCCGTGTAAATAGGTT 59.235 38.462 0.00 0.00 30.11 3.50
796 806 7.281549 CCTACAATAAGCCGTGTAAATAGGTTT 59.718 37.037 0.00 0.00 30.11 3.27
797 807 6.848451 ACAATAAGCCGTGTAAATAGGTTTG 58.152 36.000 0.00 0.00 31.12 2.93
798 808 6.431852 ACAATAAGCCGTGTAAATAGGTTTGT 59.568 34.615 0.00 0.00 31.12 2.83
799 809 7.040271 ACAATAAGCCGTGTAAATAGGTTTGTT 60.040 33.333 0.00 0.00 31.95 2.83
800 810 4.759516 AGCCGTGTAAATAGGTTTGTTG 57.240 40.909 0.00 0.00 0.00 3.33
801 811 4.391155 AGCCGTGTAAATAGGTTTGTTGA 58.609 39.130 0.00 0.00 0.00 3.18
802 812 5.007682 AGCCGTGTAAATAGGTTTGTTGAT 58.992 37.500 0.00 0.00 0.00 2.57
803 813 5.092781 GCCGTGTAAATAGGTTTGTTGATG 58.907 41.667 0.00 0.00 0.00 3.07
804 814 5.636837 CCGTGTAAATAGGTTTGTTGATGG 58.363 41.667 0.00 0.00 0.00 3.51
805 815 5.182380 CCGTGTAAATAGGTTTGTTGATGGT 59.818 40.000 0.00 0.00 0.00 3.55
806 816 6.083630 CGTGTAAATAGGTTTGTTGATGGTG 58.916 40.000 0.00 0.00 0.00 4.17
807 817 6.293735 CGTGTAAATAGGTTTGTTGATGGTGT 60.294 38.462 0.00 0.00 0.00 4.16
808 818 7.430441 GTGTAAATAGGTTTGTTGATGGTGTT 58.570 34.615 0.00 0.00 0.00 3.32
809 819 7.923878 GTGTAAATAGGTTTGTTGATGGTGTTT 59.076 33.333 0.00 0.00 0.00 2.83
810 820 7.923344 TGTAAATAGGTTTGTTGATGGTGTTTG 59.077 33.333 0.00 0.00 0.00 2.93
811 821 6.478512 AATAGGTTTGTTGATGGTGTTTGT 57.521 33.333 0.00 0.00 0.00 2.83
812 822 4.385358 AGGTTTGTTGATGGTGTTTGTC 57.615 40.909 0.00 0.00 0.00 3.18
813 823 3.112580 GGTTTGTTGATGGTGTTTGTCG 58.887 45.455 0.00 0.00 0.00 4.35
814 824 3.181495 GGTTTGTTGATGGTGTTTGTCGA 60.181 43.478 0.00 0.00 0.00 4.20
815 825 3.961477 TTGTTGATGGTGTTTGTCGAG 57.039 42.857 0.00 0.00 0.00 4.04
816 826 3.186702 TGTTGATGGTGTTTGTCGAGA 57.813 42.857 0.00 0.00 0.00 4.04
817 827 2.869801 TGTTGATGGTGTTTGTCGAGAC 59.130 45.455 0.00 0.00 0.00 3.36
818 828 3.131396 GTTGATGGTGTTTGTCGAGACT 58.869 45.455 4.78 0.00 0.00 3.24
819 829 4.202172 TGTTGATGGTGTTTGTCGAGACTA 60.202 41.667 4.78 0.00 0.00 2.59
820 830 4.801330 TGATGGTGTTTGTCGAGACTAT 57.199 40.909 4.78 0.00 0.00 2.12
821 831 5.907866 TGATGGTGTTTGTCGAGACTATA 57.092 39.130 4.78 0.00 0.00 1.31
822 832 5.891451 TGATGGTGTTTGTCGAGACTATAG 58.109 41.667 4.78 0.00 0.00 1.31
823 833 4.713824 TGGTGTTTGTCGAGACTATAGG 57.286 45.455 4.43 0.00 0.00 2.57
824 834 3.446161 TGGTGTTTGTCGAGACTATAGGG 59.554 47.826 4.43 0.00 0.00 3.53
825 835 3.181478 GGTGTTTGTCGAGACTATAGGGG 60.181 52.174 4.43 0.00 0.00 4.79
826 836 3.028850 TGTTTGTCGAGACTATAGGGGG 58.971 50.000 4.43 0.00 0.00 5.40
827 837 3.029570 GTTTGTCGAGACTATAGGGGGT 58.970 50.000 4.43 0.00 0.00 4.95
828 838 3.393426 TTGTCGAGACTATAGGGGGTT 57.607 47.619 4.43 0.00 0.00 4.11
829 839 4.524802 TTGTCGAGACTATAGGGGGTTA 57.475 45.455 4.43 0.00 0.00 2.85
830 840 4.096190 TGTCGAGACTATAGGGGGTTAG 57.904 50.000 4.43 0.00 0.00 2.34
831 841 3.718434 TGTCGAGACTATAGGGGGTTAGA 59.282 47.826 4.43 0.00 0.00 2.10
832 842 4.071423 GTCGAGACTATAGGGGGTTAGAC 58.929 52.174 4.43 1.24 0.00 2.59
833 843 3.718434 TCGAGACTATAGGGGGTTAGACA 59.282 47.826 4.43 0.00 0.00 3.41
834 844 4.353191 TCGAGACTATAGGGGGTTAGACAT 59.647 45.833 4.43 0.00 0.00 3.06
835 845 4.701171 CGAGACTATAGGGGGTTAGACATC 59.299 50.000 4.43 0.00 0.00 3.06
840 850 2.191981 AGGGGGTTAGACATCCGATT 57.808 50.000 0.00 0.00 0.00 3.34
843 853 1.202770 GGGGTTAGACATCCGATTGGG 60.203 57.143 0.00 0.00 35.24 4.12
924 934 4.079730 TCCTCTGCTCACTCCTCTTATACA 60.080 45.833 0.00 0.00 0.00 2.29
1203 1546 3.775654 CTCGCCGCCCTCTTCCTT 61.776 66.667 0.00 0.00 0.00 3.36
1705 2048 2.249139 GGTACCTCAAGACAGGTGACT 58.751 52.381 4.06 0.00 47.00 3.41
2062 2405 2.538141 TTTGTCCCTGCCCTGGAGG 61.538 63.158 0.00 0.00 39.47 4.30
2169 2512 0.963856 TGAAGCATGCCAAGGAGCTG 60.964 55.000 15.66 0.00 37.41 4.24
2275 2618 1.846782 CCGAGATGAAAGCGTAACTCG 59.153 52.381 0.00 0.00 44.05 4.18
2312 2655 0.605050 TATGTTGTCGCCTGCAAGCA 60.605 50.000 8.26 0.00 0.00 3.91
2326 2669 5.415415 CTGCAAGCAGGTGATAAGTTATC 57.585 43.478 14.10 14.86 40.17 1.75
2338 2681 8.936864 AGGTGATAAGTTATCGTTTTCTTCTTG 58.063 33.333 16.29 0.00 38.02 3.02
2356 2699 7.978982 TCTTCTTGCACTTGAAATCTATTAGC 58.021 34.615 0.00 0.00 0.00 3.09
2387 2730 2.203972 CTTCATGTGCTTGTGGCCGG 62.204 60.000 0.00 0.00 40.92 6.13
2395 2738 1.966451 CTTGTGGCCGGTTGACTCC 60.966 63.158 1.90 0.00 0.00 3.85
2406 2749 1.609320 GGTTGACTCCAGCAGTTCCTC 60.609 57.143 0.00 0.00 34.41 3.71
2416 2759 0.322008 GCAGTTCCTCTGGTTCAGGG 60.322 60.000 0.00 0.00 43.78 4.45
2531 2874 3.931578 ACTTCAGTTACCAGATGCAGTC 58.068 45.455 0.00 0.00 0.00 3.51
2548 2891 5.479306 TGCAGTCTGTACCACTTCTTTATC 58.521 41.667 0.93 0.00 0.00 1.75
2563 2906 8.180267 CACTTCTTTATCATCACAATTCACCTC 58.820 37.037 0.00 0.00 0.00 3.85
2564 2907 8.105829 ACTTCTTTATCATCACAATTCACCTCT 58.894 33.333 0.00 0.00 0.00 3.69
2565 2908 9.605275 CTTCTTTATCATCACAATTCACCTCTA 57.395 33.333 0.00 0.00 0.00 2.43
2566 2909 9.605275 TTCTTTATCATCACAATTCACCTCTAG 57.395 33.333 0.00 0.00 0.00 2.43
2611 2954 3.118038 TCTGTGTAACTTTGGGAGCAGTT 60.118 43.478 0.00 0.00 38.04 3.16
2666 3009 5.510430 TCCAAGCACTATAGAGAGAAGTCA 58.490 41.667 6.78 0.00 0.00 3.41
2720 3063 5.982890 AAAGGATTGAATCAACCGATTGT 57.017 34.783 7.56 0.00 42.06 2.71
2756 3099 0.740868 GCATGTAGGCTGCGTGAGAA 60.741 55.000 26.13 0.00 0.00 2.87
2757 3100 1.945387 CATGTAGGCTGCGTGAGAAT 58.055 50.000 18.62 0.00 0.00 2.40
2760 3103 3.819564 TGTAGGCTGCGTGAGAATAAT 57.180 42.857 4.91 0.00 0.00 1.28
2761 3104 4.137116 TGTAGGCTGCGTGAGAATAATT 57.863 40.909 4.91 0.00 0.00 1.40
2762 3105 4.513442 TGTAGGCTGCGTGAGAATAATTT 58.487 39.130 4.91 0.00 0.00 1.82
2763 3106 4.332543 TGTAGGCTGCGTGAGAATAATTTG 59.667 41.667 4.91 0.00 0.00 2.32
2765 3108 2.098117 GGCTGCGTGAGAATAATTTGCT 59.902 45.455 0.00 0.00 0.00 3.91
2766 3109 3.103738 GCTGCGTGAGAATAATTTGCTG 58.896 45.455 0.00 0.00 0.00 4.41
2768 3111 4.082274 TGCGTGAGAATAATTTGCTGTG 57.918 40.909 0.00 0.00 0.00 3.66
2773 3116 3.103738 GAGAATAATTTGCTGTGCTGCG 58.896 45.455 0.00 0.00 35.36 5.18
2775 3118 0.527113 ATAATTTGCTGTGCTGCGCA 59.473 45.000 15.86 15.86 35.60 6.09
2776 3119 0.109643 TAATTTGCTGTGCTGCGCAG 60.110 50.000 32.69 32.69 43.89 5.18
2777 3120 2.758770 AATTTGCTGTGCTGCGCAGG 62.759 55.000 35.71 21.74 41.66 4.85
2778 3121 4.933563 TTGCTGTGCTGCGCAGGA 62.934 61.111 35.71 32.80 41.66 3.86
2781 3124 2.789917 CTGTGCTGCGCAGGAATC 59.210 61.111 36.47 23.94 40.08 2.52
2782 3125 2.032376 TGTGCTGCGCAGGAATCA 59.968 55.556 36.47 26.21 40.08 2.57
2785 3128 0.171903 GTGCTGCGCAGGAATCATTT 59.828 50.000 36.47 0.00 40.08 2.32
2798 3432 3.751698 GGAATCATTTGGTCCGGCTATAC 59.248 47.826 0.00 0.00 0.00 1.47
2801 3435 2.035449 TCATTTGGTCCGGCTATACGAG 59.965 50.000 0.00 0.00 35.47 4.18
2814 3448 2.287393 ATACGAGCATGTGTACGCAA 57.713 45.000 14.03 0.00 0.00 4.85
2826 3460 2.993899 GTGTACGCAATGTAGTCTGCTT 59.006 45.455 0.39 0.00 36.38 3.91
2829 3463 2.069273 ACGCAATGTAGTCTGCTTCAC 58.931 47.619 0.00 0.00 36.38 3.18
2860 3494 9.872684 ATATGGTCTTGAATTCAGGATTATGTT 57.127 29.630 21.56 9.66 34.44 2.71
2862 3496 8.737168 TGGTCTTGAATTCAGGATTATGTTAG 57.263 34.615 21.56 6.80 34.44 2.34
2863 3497 8.328758 TGGTCTTGAATTCAGGATTATGTTAGT 58.671 33.333 21.56 0.00 34.44 2.24
2864 3498 9.178758 GGTCTTGAATTCAGGATTATGTTAGTT 57.821 33.333 21.56 0.00 34.44 2.24
3029 4042 3.343421 GTGTTGGCCACGTCGTCC 61.343 66.667 3.88 0.00 33.61 4.79
3111 4124 2.434884 CGTTCATCGCCAGCAGGT 60.435 61.111 0.00 0.00 37.19 4.00
3127 4140 1.749258 GGTTCCGCCCCATGAACTC 60.749 63.158 0.00 0.00 40.50 3.01
3128 4141 1.749258 GTTCCGCCCCATGAACTCC 60.749 63.158 0.00 0.00 38.24 3.85
3129 4142 1.923395 TTCCGCCCCATGAACTCCT 60.923 57.895 0.00 0.00 0.00 3.69
3130 4143 2.124570 CCGCCCCATGAACTCCTG 60.125 66.667 0.00 0.00 0.00 3.86
3131 4144 2.825836 CGCCCCATGAACTCCTGC 60.826 66.667 0.00 0.00 0.00 4.85
3132 4145 2.356278 GCCCCATGAACTCCTGCA 59.644 61.111 0.00 0.00 0.00 4.41
3133 4146 1.751927 GCCCCATGAACTCCTGCAG 60.752 63.158 6.78 6.78 0.00 4.41
3134 4147 1.687612 CCCCATGAACTCCTGCAGT 59.312 57.895 13.81 0.00 36.64 4.40
3136 4149 1.171308 CCCATGAACTCCTGCAGTTG 58.829 55.000 13.81 7.31 46.10 3.16
3137 4150 0.524862 CCATGAACTCCTGCAGTTGC 59.475 55.000 13.81 0.00 46.10 4.17
3138 4151 1.241165 CATGAACTCCTGCAGTTGCA 58.759 50.000 13.81 6.63 46.10 4.08
3156 4169 3.755434 GTTGCAGTGCAGCTTCCT 58.245 55.556 23.09 0.00 40.61 3.36
3157 4170 1.578423 GTTGCAGTGCAGCTTCCTC 59.422 57.895 23.09 4.29 40.61 3.71
3158 4171 1.601759 TTGCAGTGCAGCTTCCTCC 60.602 57.895 18.81 0.00 40.61 4.30
3159 4172 2.033141 GCAGTGCAGCTTCCTCCA 59.967 61.111 11.09 0.00 0.00 3.86
3160 4173 1.378250 GCAGTGCAGCTTCCTCCAT 60.378 57.895 11.09 0.00 0.00 3.41
3161 4174 0.964358 GCAGTGCAGCTTCCTCCATT 60.964 55.000 11.09 0.00 0.00 3.16
3162 4175 1.679944 GCAGTGCAGCTTCCTCCATTA 60.680 52.381 11.09 0.00 0.00 1.90
3163 4176 2.928334 CAGTGCAGCTTCCTCCATTAT 58.072 47.619 0.00 0.00 0.00 1.28
3164 4177 2.877168 CAGTGCAGCTTCCTCCATTATC 59.123 50.000 0.00 0.00 0.00 1.75
3165 4178 1.869767 GTGCAGCTTCCTCCATTATCG 59.130 52.381 0.00 0.00 0.00 2.92
3166 4179 1.486310 TGCAGCTTCCTCCATTATCGT 59.514 47.619 0.00 0.00 0.00 3.73
3167 4180 2.698274 TGCAGCTTCCTCCATTATCGTA 59.302 45.455 0.00 0.00 0.00 3.43
3168 4181 3.324846 TGCAGCTTCCTCCATTATCGTAT 59.675 43.478 0.00 0.00 0.00 3.06
3169 4182 3.681897 GCAGCTTCCTCCATTATCGTATG 59.318 47.826 0.00 0.00 0.00 2.39
3170 4183 4.800914 GCAGCTTCCTCCATTATCGTATGT 60.801 45.833 0.00 0.00 0.00 2.29
3171 4184 5.300752 CAGCTTCCTCCATTATCGTATGTT 58.699 41.667 0.00 0.00 0.00 2.71
3172 4185 5.178252 CAGCTTCCTCCATTATCGTATGTTG 59.822 44.000 0.00 0.00 0.00 3.33
3173 4186 4.083802 GCTTCCTCCATTATCGTATGTTGC 60.084 45.833 0.00 0.00 0.00 4.17
3174 4187 4.955811 TCCTCCATTATCGTATGTTGCT 57.044 40.909 0.00 0.00 0.00 3.91
3175 4188 5.290493 TCCTCCATTATCGTATGTTGCTT 57.710 39.130 0.00 0.00 0.00 3.91
3176 4189 5.297547 TCCTCCATTATCGTATGTTGCTTC 58.702 41.667 0.00 0.00 0.00 3.86
3177 4190 4.452455 CCTCCATTATCGTATGTTGCTTCC 59.548 45.833 0.00 0.00 0.00 3.46
3178 4191 5.029807 TCCATTATCGTATGTTGCTTCCA 57.970 39.130 0.00 0.00 0.00 3.53
3179 4192 5.432645 TCCATTATCGTATGTTGCTTCCAA 58.567 37.500 0.00 0.00 0.00 3.53
3180 4193 5.883115 TCCATTATCGTATGTTGCTTCCAAA 59.117 36.000 0.00 0.00 31.68 3.28
3181 4194 6.545666 TCCATTATCGTATGTTGCTTCCAAAT 59.454 34.615 0.00 0.00 31.68 2.32
3182 4195 7.068103 TCCATTATCGTATGTTGCTTCCAAATT 59.932 33.333 0.00 0.00 31.68 1.82
3183 4196 7.379529 CCATTATCGTATGTTGCTTCCAAATTC 59.620 37.037 0.00 0.00 31.68 2.17
3184 4197 4.695217 TCGTATGTTGCTTCCAAATTCC 57.305 40.909 0.00 0.00 31.68 3.01
3185 4198 4.331968 TCGTATGTTGCTTCCAAATTCCT 58.668 39.130 0.00 0.00 31.68 3.36
3186 4199 4.394920 TCGTATGTTGCTTCCAAATTCCTC 59.605 41.667 0.00 0.00 31.68 3.71
3187 4200 4.396166 CGTATGTTGCTTCCAAATTCCTCT 59.604 41.667 0.00 0.00 31.68 3.69
3188 4201 4.796038 ATGTTGCTTCCAAATTCCTCTG 57.204 40.909 0.00 0.00 31.68 3.35
3189 4202 3.565307 TGTTGCTTCCAAATTCCTCTGT 58.435 40.909 0.00 0.00 31.68 3.41
3190 4203 3.318839 TGTTGCTTCCAAATTCCTCTGTG 59.681 43.478 0.00 0.00 31.68 3.66
3191 4204 3.228188 TGCTTCCAAATTCCTCTGTGT 57.772 42.857 0.00 0.00 0.00 3.72
3192 4205 2.886523 TGCTTCCAAATTCCTCTGTGTG 59.113 45.455 0.00 0.00 0.00 3.82
3193 4206 3.149196 GCTTCCAAATTCCTCTGTGTGA 58.851 45.455 0.00 0.00 0.00 3.58
3194 4207 3.190118 GCTTCCAAATTCCTCTGTGTGAG 59.810 47.826 0.00 0.00 42.30 3.51
3195 4208 4.645535 CTTCCAAATTCCTCTGTGTGAGA 58.354 43.478 0.00 0.00 45.39 3.27
3196 4209 4.705110 TCCAAATTCCTCTGTGTGAGAA 57.295 40.909 0.00 0.00 45.39 2.87
3197 4210 5.047566 TCCAAATTCCTCTGTGTGAGAAA 57.952 39.130 0.00 0.00 45.39 2.52
3198 4211 5.065914 TCCAAATTCCTCTGTGTGAGAAAG 58.934 41.667 0.00 0.00 45.39 2.62
3199 4212 4.217118 CCAAATTCCTCTGTGTGAGAAAGG 59.783 45.833 0.00 0.00 45.39 3.11
3200 4213 4.713792 AATTCCTCTGTGTGAGAAAGGT 57.286 40.909 0.00 0.00 45.39 3.50
3201 4214 3.475566 TTCCTCTGTGTGAGAAAGGTG 57.524 47.619 0.00 0.00 45.39 4.00
3202 4215 2.398588 TCCTCTGTGTGAGAAAGGTGT 58.601 47.619 0.00 0.00 45.39 4.16
3203 4216 2.103094 TCCTCTGTGTGAGAAAGGTGTG 59.897 50.000 0.00 0.00 45.39 3.82
3204 4217 2.158900 CCTCTGTGTGAGAAAGGTGTGT 60.159 50.000 0.00 0.00 45.39 3.72
3205 4218 3.126831 CTCTGTGTGAGAAAGGTGTGTC 58.873 50.000 0.00 0.00 45.39 3.67
3206 4219 2.158957 TCTGTGTGAGAAAGGTGTGTCC 60.159 50.000 0.00 0.00 0.00 4.02
3207 4220 6.249168 CTCTGTGTGAGAAAGGTGTGTCCT 62.249 50.000 0.00 0.00 46.36 3.85
3241 4254 2.576317 GTCACGTCGTAGCTCCGC 60.576 66.667 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 64 8.370940 GTCTGGATGACAATCTCTTATGGAATA 58.629 37.037 0.00 0.00 44.73 1.75
78 80 5.248640 TCTTTCAAAGATGGTCTGGATGAC 58.751 41.667 0.00 0.00 37.51 3.06
104 109 5.863397 CCGATTGTGCACATGAAAAACTTAT 59.137 36.000 22.39 6.71 0.00 1.73
106 111 4.050553 CCGATTGTGCACATGAAAAACTT 58.949 39.130 22.39 0.00 0.00 2.66
111 116 2.225467 TGACCGATTGTGCACATGAAA 58.775 42.857 22.39 5.78 0.00 2.69
114 119 2.287487 TGTTTGACCGATTGTGCACATG 60.287 45.455 22.39 13.46 0.00 3.21
115 120 1.952990 TGTTTGACCGATTGTGCACAT 59.047 42.857 22.39 10.95 0.00 3.21
122 127 8.383318 AGATTATAAGGATGTTTGACCGATTG 57.617 34.615 0.00 0.00 0.00 2.67
126 131 7.553881 ACAAGATTATAAGGATGTTTGACCG 57.446 36.000 0.00 0.00 0.00 4.79
145 150 7.880713 TGAAATGTTACCTTGCATACTACAAGA 59.119 33.333 5.12 0.00 45.99 3.02
190 195 3.006430 GGATTTCCAAAACACGGGAACAT 59.994 43.478 0.00 0.00 42.61 2.71
206 211 5.502544 CGACCTCTTTAATTCGCAGGATTTC 60.503 44.000 0.00 0.00 0.00 2.17
243 248 3.544048 CGCGTACAATGTTGGCTATTCAG 60.544 47.826 0.00 0.00 0.00 3.02
248 253 1.336980 TGACGCGTACAATGTTGGCTA 60.337 47.619 13.97 0.00 0.00 3.93
250 255 0.236187 TTGACGCGTACAATGTTGGC 59.764 50.000 13.97 0.00 0.00 4.52
262 267 1.421410 GCCTAGGTGACATTGACGCG 61.421 60.000 11.31 3.53 0.00 6.01
268 273 0.907704 TCACGGGCCTAGGTGACATT 60.908 55.000 17.10 0.00 38.19 2.71
276 281 0.179073 CATCTGGTTCACGGGCCTAG 60.179 60.000 0.84 0.00 0.00 3.02
281 286 2.040544 GTGCCATCTGGTTCACGGG 61.041 63.158 0.00 0.00 37.57 5.28
296 301 3.195698 GCGAGGGATGGTTCGTGC 61.196 66.667 0.00 0.00 38.96 5.34
308 313 4.939509 GCTAGTAGAGATTAGAGCGAGG 57.060 50.000 0.00 0.00 0.00 4.63
312 317 3.749088 TCTGCGCTAGTAGAGATTAGAGC 59.251 47.826 9.73 1.14 39.91 4.09
317 322 3.491342 TGGATCTGCGCTAGTAGAGATT 58.509 45.455 9.73 0.00 42.23 2.40
325 330 1.495878 GACACATGGATCTGCGCTAG 58.504 55.000 9.73 4.58 0.00 3.42
368 373 1.133790 GGTGAATGCAGAGTTCATGGC 59.866 52.381 4.62 0.00 37.84 4.40
370 375 2.422479 CAGGGTGAATGCAGAGTTCATG 59.578 50.000 4.62 0.00 37.84 3.07
371 376 2.040813 ACAGGGTGAATGCAGAGTTCAT 59.959 45.455 4.62 0.00 37.84 2.57
372 377 1.421268 ACAGGGTGAATGCAGAGTTCA 59.579 47.619 0.00 0.00 33.46 3.18
373 378 1.808945 CACAGGGTGAATGCAGAGTTC 59.191 52.381 0.00 0.00 35.23 3.01
374 379 1.901591 CACAGGGTGAATGCAGAGTT 58.098 50.000 0.00 0.00 35.23 3.01
375 380 0.607489 GCACAGGGTGAATGCAGAGT 60.607 55.000 0.00 0.00 39.23 3.24
376 381 1.310933 GGCACAGGGTGAATGCAGAG 61.311 60.000 0.00 0.00 41.27 3.35
377 382 1.303561 GGCACAGGGTGAATGCAGA 60.304 57.895 0.00 0.00 41.27 4.26
413 418 1.490693 CGAGCGTGATGGTATGTGGC 61.491 60.000 0.00 0.00 0.00 5.01
445 450 2.006888 CAATGTGTAGGGGCTACAACG 58.993 52.381 0.00 0.00 46.55 4.10
447 452 2.270858 TCCAATGTGTAGGGGCTACAA 58.729 47.619 0.00 0.00 46.55 2.41
448 453 1.959710 TCCAATGTGTAGGGGCTACA 58.040 50.000 0.00 0.00 43.56 2.74
553 559 6.549433 TGACACGGTTTATTATAGGAAGGT 57.451 37.500 0.00 0.00 0.00 3.50
562 568 5.535406 ACAAACCCATTGACACGGTTTATTA 59.465 36.000 11.36 0.00 45.80 0.98
571 577 3.067040 ACCGTTAACAAACCCATTGACAC 59.933 43.478 6.39 0.00 41.85 3.67
572 578 3.066900 CACCGTTAACAAACCCATTGACA 59.933 43.478 6.39 0.00 41.85 3.58
575 585 3.719173 ACACCGTTAACAAACCCATTG 57.281 42.857 6.39 0.00 44.95 2.82
586 596 3.441496 AGTCTCGACAAACACCGTTAA 57.559 42.857 0.00 0.00 0.00 2.01
588 598 3.655276 ATAGTCTCGACAAACACCGTT 57.345 42.857 0.00 0.00 0.00 4.44
607 617 2.844348 CCGGATGTTTAGCCCCCTATAT 59.156 50.000 0.00 0.00 0.00 0.86
609 619 1.064825 CCGGATGTTTAGCCCCCTAT 58.935 55.000 0.00 0.00 0.00 2.57
610 620 0.326808 ACCGGATGTTTAGCCCCCTA 60.327 55.000 9.46 0.00 0.00 3.53
611 621 1.212250 AACCGGATGTTTAGCCCCCT 61.212 55.000 9.46 0.00 31.47 4.79
615 625 6.510638 CGAACTATAAAACCGGATGTTTAGCC 60.511 42.308 9.46 0.00 46.39 3.93
616 626 6.416514 CGAACTATAAAACCGGATGTTTAGC 58.583 40.000 9.46 0.00 46.39 3.09
617 627 6.018507 CCCGAACTATAAAACCGGATGTTTAG 60.019 42.308 9.46 2.71 46.39 1.85
639 649 3.000523 CGTGGTTCGATTACATAAACCCG 59.999 47.826 0.00 0.00 40.37 5.28
658 668 5.185157 CTGAAAGAAGGCGAGGTTTCGTG 62.185 52.174 0.00 0.00 42.80 4.35
659 669 3.123231 CTGAAAGAAGGCGAGGTTTCGT 61.123 50.000 0.00 0.00 42.80 3.85
669 679 1.131315 GGATGCGAACTGAAAGAAGGC 59.869 52.381 0.00 0.00 37.43 4.35
670 680 2.704572 AGGATGCGAACTGAAAGAAGG 58.295 47.619 0.00 0.00 37.43 3.46
713 723 6.092670 TGTCTCTTCCATTCGAAATGTCAATC 59.907 38.462 0.00 0.00 0.00 2.67
719 729 5.501413 CGACATGTCTCTTCCATTCGAAATG 60.501 44.000 22.95 0.00 31.03 2.32
720 730 4.568359 CGACATGTCTCTTCCATTCGAAAT 59.432 41.667 22.95 0.00 31.03 2.17
727 737 3.491619 CGATTCCGACATGTCTCTTCCAT 60.492 47.826 22.95 6.86 38.22 3.41
729 739 2.464865 CGATTCCGACATGTCTCTTCC 58.535 52.381 22.95 8.88 38.22 3.46
730 740 2.159226 ACCGATTCCGACATGTCTCTTC 60.159 50.000 22.95 12.95 38.22 2.87
731 741 1.825474 ACCGATTCCGACATGTCTCTT 59.175 47.619 22.95 5.79 38.22 2.85
732 742 1.475403 ACCGATTCCGACATGTCTCT 58.525 50.000 22.95 5.27 38.22 3.10
733 743 1.927174 CAACCGATTCCGACATGTCTC 59.073 52.381 22.95 12.71 38.22 3.36
734 744 1.548719 TCAACCGATTCCGACATGTCT 59.451 47.619 22.95 4.58 38.22 3.41
735 745 2.004583 TCAACCGATTCCGACATGTC 57.995 50.000 16.21 16.21 38.22 3.06
736 746 2.677836 CAATCAACCGATTCCGACATGT 59.322 45.455 0.00 0.00 39.96 3.21
737 747 2.935849 TCAATCAACCGATTCCGACATG 59.064 45.455 0.00 0.00 39.96 3.21
738 748 2.936498 GTCAATCAACCGATTCCGACAT 59.064 45.455 0.00 0.00 39.96 3.06
739 749 2.289133 TGTCAATCAACCGATTCCGACA 60.289 45.455 4.95 4.95 39.96 4.35
740 750 2.343101 TGTCAATCAACCGATTCCGAC 58.657 47.619 0.00 0.00 39.96 4.79
741 751 2.028476 ACTGTCAATCAACCGATTCCGA 60.028 45.455 0.00 0.00 39.96 4.55
742 752 2.346803 ACTGTCAATCAACCGATTCCG 58.653 47.619 0.00 0.00 39.96 4.30
743 753 3.181520 CGAACTGTCAATCAACCGATTCC 60.182 47.826 0.00 0.00 39.96 3.01
744 754 3.725010 GCGAACTGTCAATCAACCGATTC 60.725 47.826 0.00 0.00 39.96 2.52
745 755 2.159627 GCGAACTGTCAATCAACCGATT 59.840 45.455 0.00 0.00 42.81 3.34
746 756 1.732259 GCGAACTGTCAATCAACCGAT 59.268 47.619 0.00 0.00 0.00 4.18
747 757 1.144969 GCGAACTGTCAATCAACCGA 58.855 50.000 0.00 0.00 0.00 4.69
748 758 0.165944 GGCGAACTGTCAATCAACCG 59.834 55.000 0.00 0.00 0.00 4.44
749 759 1.523758 AGGCGAACTGTCAATCAACC 58.476 50.000 0.00 0.00 0.00 3.77
750 760 2.095718 GGAAGGCGAACTGTCAATCAAC 60.096 50.000 0.00 0.00 0.00 3.18
751 761 2.151202 GGAAGGCGAACTGTCAATCAA 58.849 47.619 0.00 0.00 0.00 2.57
752 762 1.347707 AGGAAGGCGAACTGTCAATCA 59.652 47.619 0.00 0.00 0.00 2.57
753 763 2.100605 AGGAAGGCGAACTGTCAATC 57.899 50.000 0.00 0.00 0.00 2.67
754 764 2.301870 TGTAGGAAGGCGAACTGTCAAT 59.698 45.455 0.00 0.00 0.00 2.57
755 765 1.689813 TGTAGGAAGGCGAACTGTCAA 59.310 47.619 0.00 0.00 0.00 3.18
756 766 1.334160 TGTAGGAAGGCGAACTGTCA 58.666 50.000 0.00 0.00 0.00 3.58
757 767 2.450609 TTGTAGGAAGGCGAACTGTC 57.549 50.000 0.00 0.00 0.00 3.51
758 768 4.504858 CTTATTGTAGGAAGGCGAACTGT 58.495 43.478 0.00 0.00 0.00 3.55
759 769 3.309954 GCTTATTGTAGGAAGGCGAACTG 59.690 47.826 0.00 0.00 0.00 3.16
760 770 3.532542 GCTTATTGTAGGAAGGCGAACT 58.467 45.455 0.00 0.00 0.00 3.01
761 771 2.612672 GGCTTATTGTAGGAAGGCGAAC 59.387 50.000 0.00 0.00 38.31 3.95
762 772 2.914059 GGCTTATTGTAGGAAGGCGAA 58.086 47.619 0.00 0.00 38.31 4.70
763 773 2.614829 GGCTTATTGTAGGAAGGCGA 57.385 50.000 0.00 0.00 38.31 5.54
765 775 1.940613 CACGGCTTATTGTAGGAAGGC 59.059 52.381 0.00 0.00 43.01 4.35
766 776 3.261981 ACACGGCTTATTGTAGGAAGG 57.738 47.619 0.00 0.00 0.00 3.46
767 777 6.920569 ATTTACACGGCTTATTGTAGGAAG 57.079 37.500 0.00 0.00 30.03 3.46
768 778 6.987992 CCTATTTACACGGCTTATTGTAGGAA 59.012 38.462 0.00 0.00 30.03 3.36
769 779 6.098695 ACCTATTTACACGGCTTATTGTAGGA 59.901 38.462 0.00 0.00 30.03 2.94
770 780 6.285990 ACCTATTTACACGGCTTATTGTAGG 58.714 40.000 0.00 0.00 30.03 3.18
771 781 7.781548 AACCTATTTACACGGCTTATTGTAG 57.218 36.000 0.00 0.00 30.03 2.74
772 782 7.607223 ACAAACCTATTTACACGGCTTATTGTA 59.393 33.333 0.00 0.00 0.00 2.41
773 783 6.431852 ACAAACCTATTTACACGGCTTATTGT 59.568 34.615 0.00 0.00 0.00 2.71
774 784 6.848451 ACAAACCTATTTACACGGCTTATTG 58.152 36.000 0.00 0.00 0.00 1.90
775 785 7.175293 TCAACAAACCTATTTACACGGCTTATT 59.825 33.333 0.00 0.00 0.00 1.40
776 786 6.655848 TCAACAAACCTATTTACACGGCTTAT 59.344 34.615 0.00 0.00 0.00 1.73
777 787 5.996513 TCAACAAACCTATTTACACGGCTTA 59.003 36.000 0.00 0.00 0.00 3.09
778 788 4.822896 TCAACAAACCTATTTACACGGCTT 59.177 37.500 0.00 0.00 0.00 4.35
779 789 4.391155 TCAACAAACCTATTTACACGGCT 58.609 39.130 0.00 0.00 0.00 5.52
780 790 4.752661 TCAACAAACCTATTTACACGGC 57.247 40.909 0.00 0.00 0.00 5.68
781 791 5.182380 ACCATCAACAAACCTATTTACACGG 59.818 40.000 0.00 0.00 0.00 4.94
782 792 6.083630 CACCATCAACAAACCTATTTACACG 58.916 40.000 0.00 0.00 0.00 4.49
783 793 6.977213 ACACCATCAACAAACCTATTTACAC 58.023 36.000 0.00 0.00 0.00 2.90
784 794 7.589958 AACACCATCAACAAACCTATTTACA 57.410 32.000 0.00 0.00 0.00 2.41
785 795 7.923878 ACAAACACCATCAACAAACCTATTTAC 59.076 33.333 0.00 0.00 0.00 2.01
786 796 8.012957 ACAAACACCATCAACAAACCTATTTA 57.987 30.769 0.00 0.00 0.00 1.40
787 797 6.883744 ACAAACACCATCAACAAACCTATTT 58.116 32.000 0.00 0.00 0.00 1.40
788 798 6.478512 ACAAACACCATCAACAAACCTATT 57.521 33.333 0.00 0.00 0.00 1.73
789 799 5.278266 CGACAAACACCATCAACAAACCTAT 60.278 40.000 0.00 0.00 0.00 2.57
790 800 4.035792 CGACAAACACCATCAACAAACCTA 59.964 41.667 0.00 0.00 0.00 3.08
791 801 3.181491 CGACAAACACCATCAACAAACCT 60.181 43.478 0.00 0.00 0.00 3.50
792 802 3.112580 CGACAAACACCATCAACAAACC 58.887 45.455 0.00 0.00 0.00 3.27
793 803 4.022464 TCGACAAACACCATCAACAAAC 57.978 40.909 0.00 0.00 0.00 2.93
794 804 3.942115 TCTCGACAAACACCATCAACAAA 59.058 39.130 0.00 0.00 0.00 2.83
795 805 3.311322 GTCTCGACAAACACCATCAACAA 59.689 43.478 0.00 0.00 0.00 2.83
796 806 2.869801 GTCTCGACAAACACCATCAACA 59.130 45.455 0.00 0.00 0.00 3.33
797 807 3.131396 AGTCTCGACAAACACCATCAAC 58.869 45.455 0.00 0.00 0.00 3.18
798 808 3.469008 AGTCTCGACAAACACCATCAA 57.531 42.857 0.00 0.00 0.00 2.57
799 809 4.801330 ATAGTCTCGACAAACACCATCA 57.199 40.909 0.00 0.00 0.00 3.07
800 810 5.282510 CCTATAGTCTCGACAAACACCATC 58.717 45.833 0.00 0.00 0.00 3.51
801 811 4.099573 CCCTATAGTCTCGACAAACACCAT 59.900 45.833 0.00 0.00 0.00 3.55
802 812 3.446161 CCCTATAGTCTCGACAAACACCA 59.554 47.826 0.00 0.00 0.00 4.17
803 813 3.181478 CCCCTATAGTCTCGACAAACACC 60.181 52.174 0.00 0.00 0.00 4.16
804 814 3.181478 CCCCCTATAGTCTCGACAAACAC 60.181 52.174 0.00 0.00 0.00 3.32
805 815 3.028850 CCCCCTATAGTCTCGACAAACA 58.971 50.000 0.00 0.00 0.00 2.83
806 816 3.029570 ACCCCCTATAGTCTCGACAAAC 58.970 50.000 0.00 0.00 0.00 2.93
807 817 3.393426 ACCCCCTATAGTCTCGACAAA 57.607 47.619 0.00 0.00 0.00 2.83
808 818 3.393426 AACCCCCTATAGTCTCGACAA 57.607 47.619 0.00 0.00 0.00 3.18
809 819 3.718434 TCTAACCCCCTATAGTCTCGACA 59.282 47.826 0.00 0.00 0.00 4.35
810 820 4.071423 GTCTAACCCCCTATAGTCTCGAC 58.929 52.174 0.00 0.00 0.00 4.20
811 821 3.718434 TGTCTAACCCCCTATAGTCTCGA 59.282 47.826 0.00 0.00 0.00 4.04
812 822 4.096190 TGTCTAACCCCCTATAGTCTCG 57.904 50.000 0.00 0.00 0.00 4.04
813 823 5.018149 GGATGTCTAACCCCCTATAGTCTC 58.982 50.000 0.00 0.00 0.00 3.36
814 824 4.508763 CGGATGTCTAACCCCCTATAGTCT 60.509 50.000 0.00 0.00 0.00 3.24
815 825 3.762823 CGGATGTCTAACCCCCTATAGTC 59.237 52.174 0.00 0.00 0.00 2.59
816 826 3.400322 TCGGATGTCTAACCCCCTATAGT 59.600 47.826 0.00 0.00 0.00 2.12
817 827 4.043608 TCGGATGTCTAACCCCCTATAG 57.956 50.000 0.00 0.00 0.00 1.31
818 828 4.687262 ATCGGATGTCTAACCCCCTATA 57.313 45.455 0.00 0.00 0.00 1.31
819 829 3.562108 ATCGGATGTCTAACCCCCTAT 57.438 47.619 0.00 0.00 0.00 2.57
820 830 2.969950 CAATCGGATGTCTAACCCCCTA 59.030 50.000 0.00 0.00 0.00 3.53
821 831 1.768870 CAATCGGATGTCTAACCCCCT 59.231 52.381 0.00 0.00 0.00 4.79
822 832 1.202770 CCAATCGGATGTCTAACCCCC 60.203 57.143 0.00 0.00 0.00 5.40
823 833 1.202770 CCCAATCGGATGTCTAACCCC 60.203 57.143 0.00 0.00 0.00 4.95
824 834 1.766496 TCCCAATCGGATGTCTAACCC 59.234 52.381 0.00 0.00 34.86 4.11
825 835 2.698797 TCTCCCAATCGGATGTCTAACC 59.301 50.000 0.00 0.00 41.00 2.85
826 836 3.637229 TCTCTCCCAATCGGATGTCTAAC 59.363 47.826 0.00 0.00 41.00 2.34
827 837 3.910989 TCTCTCCCAATCGGATGTCTAA 58.089 45.455 0.00 0.00 41.00 2.10
828 838 3.595190 TCTCTCCCAATCGGATGTCTA 57.405 47.619 0.00 0.00 41.00 2.59
829 839 2.461300 TCTCTCCCAATCGGATGTCT 57.539 50.000 0.00 0.00 41.00 3.41
830 840 3.543680 TTTCTCTCCCAATCGGATGTC 57.456 47.619 0.00 0.00 41.00 3.06
831 841 3.200825 ACATTTCTCTCCCAATCGGATGT 59.799 43.478 0.00 0.00 41.00 3.06
832 842 3.812053 GACATTTCTCTCCCAATCGGATG 59.188 47.826 0.00 0.00 41.00 3.51
833 843 3.493350 CGACATTTCTCTCCCAATCGGAT 60.493 47.826 0.00 0.00 41.00 4.18
834 844 2.159099 CGACATTTCTCTCCCAATCGGA 60.159 50.000 0.00 0.00 38.83 4.55
835 845 2.159099 TCGACATTTCTCTCCCAATCGG 60.159 50.000 0.00 0.00 0.00 4.18
840 850 3.521560 CGATTTCGACATTTCTCTCCCA 58.478 45.455 0.00 0.00 43.02 4.37
843 853 3.552294 GTCCCGATTTCGACATTTCTCTC 59.448 47.826 0.67 0.00 43.02 3.20
941 951 0.679640 CGAGCAGGGCAATGGGTTTA 60.680 55.000 0.00 0.00 0.00 2.01
982 992 4.376170 CGGGGAAGGGTTTGGGGG 62.376 72.222 0.00 0.00 0.00 5.40
1203 1546 2.274104 GGGTGCGGGATGCCTTTA 59.726 61.111 0.28 0.00 45.60 1.85
1524 1867 2.107953 GTGATGGAGAGCTCGGCC 59.892 66.667 18.43 18.43 0.00 6.13
1649 1992 0.826715 GCAGGAGACTATGTCTGGCA 59.173 55.000 4.85 0.00 43.53 4.92
1705 2048 2.202690 CAGGTCGAACGCGGCATA 60.203 61.111 12.47 0.00 45.70 3.14
2104 2447 0.908198 ATCAGACCCTTGACAGCCTC 59.092 55.000 0.00 0.00 0.00 4.70
2169 2512 1.450531 CCTTCTTCATCGCCATGCCC 61.451 60.000 0.00 0.00 0.00 5.36
2281 2624 2.778299 GACAACATACTGTCCCAAGCA 58.222 47.619 0.00 0.00 39.93 3.91
2307 2650 6.422776 AAACGATAACTTATCACCTGCTTG 57.577 37.500 9.08 0.00 34.87 4.01
2312 2655 8.936864 CAAGAAGAAAACGATAACTTATCACCT 58.063 33.333 9.08 0.00 34.87 4.00
2326 2669 5.973565 AGATTTCAAGTGCAAGAAGAAAACG 59.026 36.000 8.35 0.00 32.65 3.60
2338 2681 5.485662 AACGGCTAATAGATTTCAAGTGC 57.514 39.130 0.00 0.00 0.00 4.40
2356 2699 2.788786 GCACATGAAGAAACACAAACGG 59.211 45.455 0.00 0.00 0.00 4.44
2387 2730 1.346068 AGAGGAACTGCTGGAGTCAAC 59.654 52.381 1.22 0.00 41.55 3.18
2395 2738 1.610102 CCTGAACCAGAGGAACTGCTG 60.610 57.143 0.00 0.00 44.52 4.41
2406 2749 2.237143 TCTATCTTGTGCCCTGAACCAG 59.763 50.000 0.00 0.00 0.00 4.00
2531 2874 7.905604 TTGTGATGATAAAGAAGTGGTACAG 57.094 36.000 0.00 0.00 41.80 2.74
2548 2891 4.334759 CCAAGCTAGAGGTGAATTGTGATG 59.665 45.833 0.00 0.00 0.00 3.07
2566 2909 6.317391 AGAGAACAATATCTAAAGCACCAAGC 59.683 38.462 0.00 0.00 46.19 4.01
2611 2954 1.347707 CTACAGGTTCAGAAGGTGCCA 59.652 52.381 0.00 0.00 0.00 4.92
2666 3009 7.122650 AGCAGTACAAAGGCAACAAACATATAT 59.877 33.333 0.00 0.00 41.41 0.86
2720 3063 7.922278 GCCTACATGCTGAATTATGAAATCAAA 59.078 33.333 0.00 0.00 0.00 2.69
2773 3116 0.740737 CCGGACCAAATGATTCCTGC 59.259 55.000 0.00 0.00 0.00 4.85
2775 3118 0.625849 AGCCGGACCAAATGATTCCT 59.374 50.000 5.05 0.00 0.00 3.36
2776 3119 2.341846 TAGCCGGACCAAATGATTCC 57.658 50.000 5.05 0.00 0.00 3.01
2777 3120 3.432252 CGTATAGCCGGACCAAATGATTC 59.568 47.826 5.05 0.00 0.00 2.52
2778 3121 3.070446 TCGTATAGCCGGACCAAATGATT 59.930 43.478 5.05 0.00 0.00 2.57
2781 3124 2.404215 CTCGTATAGCCGGACCAAATG 58.596 52.381 5.05 0.00 0.00 2.32
2782 3125 1.270147 GCTCGTATAGCCGGACCAAAT 60.270 52.381 5.05 0.00 46.25 2.32
2785 3128 3.440151 GCTCGTATAGCCGGACCA 58.560 61.111 5.05 0.00 46.25 4.02
2798 3432 0.721154 ACATTGCGTACACATGCTCG 59.279 50.000 0.00 0.00 37.58 5.03
2801 3435 2.930040 AGACTACATTGCGTACACATGC 59.070 45.455 0.00 0.00 37.19 4.06
2810 3444 1.059692 CGTGAAGCAGACTACATTGCG 59.940 52.381 0.00 0.00 44.80 4.85
2826 3460 6.287525 TGAATTCAAGACCATATATGCGTGA 58.712 36.000 5.45 6.11 0.00 4.35
2829 3463 5.934043 TCCTGAATTCAAGACCATATATGCG 59.066 40.000 9.88 3.71 0.00 4.73
2860 3494 6.525578 ACGAATGGATCTACAAGTGAACTA 57.474 37.500 0.00 0.00 0.00 2.24
2862 3496 4.265556 CGACGAATGGATCTACAAGTGAAC 59.734 45.833 0.00 0.00 0.00 3.18
2863 3497 4.421058 CGACGAATGGATCTACAAGTGAA 58.579 43.478 0.00 0.00 0.00 3.18
2864 3498 3.181490 CCGACGAATGGATCTACAAGTGA 60.181 47.826 0.00 0.00 0.00 3.41
2865 3499 3.116300 CCGACGAATGGATCTACAAGTG 58.884 50.000 0.00 0.00 0.00 3.16
3029 4042 2.496817 GAGTACCTGCTCCGCCTG 59.503 66.667 0.00 0.00 0.00 4.85
3111 4124 1.923395 AGGAGTTCATGGGGCGGAA 60.923 57.895 0.00 0.00 0.00 4.30
3136 4149 1.371389 GAAGCTGCACTGCAACTGC 60.371 57.895 7.70 6.66 38.41 4.40
3137 4150 1.170919 AGGAAGCTGCACTGCAACTG 61.171 55.000 7.70 0.00 38.41 3.16
3138 4151 0.888285 GAGGAAGCTGCACTGCAACT 60.888 55.000 4.99 2.83 38.41 3.16
3139 4152 1.578423 GAGGAAGCTGCACTGCAAC 59.422 57.895 4.99 0.07 38.41 4.17
3140 4153 1.601759 GGAGGAAGCTGCACTGCAA 60.602 57.895 4.99 0.00 38.41 4.08
3141 4154 2.033141 GGAGGAAGCTGCACTGCA 59.967 61.111 3.11 3.11 36.92 4.41
3142 4155 0.964358 AATGGAGGAAGCTGCACTGC 60.964 55.000 1.02 2.99 0.00 4.40
3143 4156 2.408271 TAATGGAGGAAGCTGCACTG 57.592 50.000 1.02 0.00 0.00 3.66
3144 4157 2.484417 CGATAATGGAGGAAGCTGCACT 60.484 50.000 1.02 0.00 0.00 4.40
3145 4158 1.869767 CGATAATGGAGGAAGCTGCAC 59.130 52.381 1.02 0.00 0.00 4.57
3146 4159 1.486310 ACGATAATGGAGGAAGCTGCA 59.514 47.619 1.02 0.00 0.00 4.41
3147 4160 2.246719 ACGATAATGGAGGAAGCTGC 57.753 50.000 0.00 0.00 0.00 5.25
3148 4161 4.887748 ACATACGATAATGGAGGAAGCTG 58.112 43.478 0.00 0.00 0.00 4.24
3149 4162 5.300752 CAACATACGATAATGGAGGAAGCT 58.699 41.667 0.00 0.00 0.00 3.74
3150 4163 4.083802 GCAACATACGATAATGGAGGAAGC 60.084 45.833 0.00 0.00 0.00 3.86
3151 4164 5.300752 AGCAACATACGATAATGGAGGAAG 58.699 41.667 0.00 0.00 0.00 3.46
3152 4165 5.290493 AGCAACATACGATAATGGAGGAA 57.710 39.130 0.00 0.00 0.00 3.36
3153 4166 4.955811 AGCAACATACGATAATGGAGGA 57.044 40.909 0.00 0.00 0.00 3.71
3154 4167 4.452455 GGAAGCAACATACGATAATGGAGG 59.548 45.833 0.00 0.00 0.00 4.30
3155 4168 5.056480 TGGAAGCAACATACGATAATGGAG 58.944 41.667 0.00 0.00 0.00 3.86
3156 4169 5.029807 TGGAAGCAACATACGATAATGGA 57.970 39.130 0.00 0.00 0.00 3.41
3157 4170 5.749596 TTGGAAGCAACATACGATAATGG 57.250 39.130 0.00 0.00 0.00 3.16
3158 4171 7.379529 GGAATTTGGAAGCAACATACGATAATG 59.620 37.037 0.00 0.00 0.00 1.90
3159 4172 7.285401 AGGAATTTGGAAGCAACATACGATAAT 59.715 33.333 0.00 0.00 0.00 1.28
3160 4173 6.601613 AGGAATTTGGAAGCAACATACGATAA 59.398 34.615 0.00 0.00 0.00 1.75
3161 4174 6.119536 AGGAATTTGGAAGCAACATACGATA 58.880 36.000 0.00 0.00 0.00 2.92
3162 4175 4.949856 AGGAATTTGGAAGCAACATACGAT 59.050 37.500 0.00 0.00 0.00 3.73
3163 4176 4.331968 AGGAATTTGGAAGCAACATACGA 58.668 39.130 0.00 0.00 0.00 3.43
3164 4177 4.396166 AGAGGAATTTGGAAGCAACATACG 59.604 41.667 0.00 0.00 0.00 3.06
3165 4178 5.183904 ACAGAGGAATTTGGAAGCAACATAC 59.816 40.000 0.00 0.00 0.00 2.39
3166 4179 5.183713 CACAGAGGAATTTGGAAGCAACATA 59.816 40.000 0.00 0.00 0.00 2.29
3167 4180 4.021719 CACAGAGGAATTTGGAAGCAACAT 60.022 41.667 0.00 0.00 0.00 2.71
3168 4181 3.318839 CACAGAGGAATTTGGAAGCAACA 59.681 43.478 0.00 0.00 0.00 3.33
3169 4182 3.319122 ACACAGAGGAATTTGGAAGCAAC 59.681 43.478 0.00 0.00 0.00 4.17
3170 4183 3.318839 CACACAGAGGAATTTGGAAGCAA 59.681 43.478 0.00 0.00 0.00 3.91
3171 4184 2.886523 CACACAGAGGAATTTGGAAGCA 59.113 45.455 0.00 0.00 0.00 3.91
3172 4185 3.149196 TCACACAGAGGAATTTGGAAGC 58.851 45.455 0.00 0.00 0.00 3.86
3173 4186 4.645535 TCTCACACAGAGGAATTTGGAAG 58.354 43.478 0.00 0.00 44.81 3.46
3174 4187 4.705110 TCTCACACAGAGGAATTTGGAA 57.295 40.909 0.00 0.00 44.81 3.53
3175 4188 4.705110 TTCTCACACAGAGGAATTTGGA 57.295 40.909 0.00 0.00 44.81 3.53
3176 4189 4.217118 CCTTTCTCACACAGAGGAATTTGG 59.783 45.833 0.00 0.00 41.06 3.28
3177 4190 4.823989 ACCTTTCTCACACAGAGGAATTTG 59.176 41.667 0.00 0.00 41.06 2.32
3178 4191 4.823989 CACCTTTCTCACACAGAGGAATTT 59.176 41.667 0.00 0.00 41.06 1.82
3179 4192 4.141390 ACACCTTTCTCACACAGAGGAATT 60.141 41.667 0.00 0.00 41.06 2.17
3180 4193 3.392616 ACACCTTTCTCACACAGAGGAAT 59.607 43.478 0.00 0.00 41.06 3.01
3181 4194 2.771943 ACACCTTTCTCACACAGAGGAA 59.228 45.455 0.00 0.00 44.81 3.36
3182 4195 2.103094 CACACCTTTCTCACACAGAGGA 59.897 50.000 0.00 0.00 44.81 3.71
3183 4196 2.158900 ACACACCTTTCTCACACAGAGG 60.159 50.000 0.00 0.00 44.81 3.69
3184 4197 3.126831 GACACACCTTTCTCACACAGAG 58.873 50.000 0.00 0.00 46.14 3.35
3185 4198 2.158957 GGACACACCTTTCTCACACAGA 60.159 50.000 0.00 0.00 35.41 3.41
3186 4199 2.213499 GGACACACCTTTCTCACACAG 58.787 52.381 0.00 0.00 35.41 3.66
3187 4200 2.325583 GGACACACCTTTCTCACACA 57.674 50.000 0.00 0.00 35.41 3.72
3198 4211 1.961277 CGCAAGGTCAGGACACACC 60.961 63.158 1.41 0.00 39.35 4.16
3199 4212 3.642755 CGCAAGGTCAGGACACAC 58.357 61.111 1.41 0.00 0.00 3.82
3214 4227 3.248171 GACGTGACGCTCATCCGC 61.248 66.667 4.25 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.