AutoCloner

Multiple sequence alignment - TraesCS6B01G472600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G472600	chr6B	100.000	3053	0	0	1	3053	720232790	720235842	0.000000e+00	5638.0
1	TraesCS6B01G472600	chr6B	97.215	1221	23	5	835	2055	720197178	720198387	0.000000e+00	2056.0
2	TraesCS6B01G472600	chr6B	92.214	822	35	9	1	822	720196400	720197192	0.000000e+00	1136.0
3	TraesCS6B01G472600	chr6B	93.426	289	18	1	1792	2079	720201301	720201589	7.820000e-116	427.0
4	TraesCS6B01G472600	chr6A	94.756	1087	54	1	997	2083	615544803	615545886	0.000000e+00	1688.0
5	TraesCS6B01G472600	chr6A	89.161	775	73	7	2	774	615543514	615544279	0.000000e+00	955.0
6	TraesCS6B01G472600	chr6A	82.119	604	97	7	1	604	570490156	570490748	9.770000e-140	507.0
7	TraesCS6B01G472600	chr6A	93.377	151	4	3	835	982	615544603	615544750	5.130000e-53	219.0
8	TraesCS6B01G472600	chr6D	94.480	1087	45	2	997	2083	470665213	470666284	0.000000e+00	1661.0
9	TraesCS6B01G472600	chr6D	86.003	593	60	17	2106	2694	316321123	316320550	5.590000e-172	614.0
10	TraesCS6B01G472600	chr6D	87.895	380	25	10	2654	3029	316320676	316320314	7.820000e-116	427.0
11	TraesCS6B01G472600	chr4B	93.056	792	45	7	2263	3053	437095261	437094479	0.000000e+00	1149.0
12	TraesCS6B01G472600	chr4B	92.020	614	41	4	2109	2721	508547030	508547636	0.000000e+00	856.0
13	TraesCS6B01G472600	chr4B	92.857	448	27	5	2609	3053	508547479	508547924	0.000000e+00	645.0
14	TraesCS6B01G472600	chr7B	93.031	617	37	6	2106	2721	648278927	648279538	0.000000e+00	896.0
15	TraesCS6B01G472600	chr7B	90.848	448	27	8	2610	3053	648279383	648279820	3.390000e-164	588.0
16	TraesCS6B01G472600	chr7B	80.308	584	98	12	1	583	616494425	616494992	2.810000e-115	425.0
17	TraesCS6B01G472600	chr2A	93.031	617	35	7	2106	2721	559618710	559619319	0.000000e+00	894.0
18	TraesCS6B01G472600	chr2A	89.259	540	42	12	2106	2640	678606702	678607230	0.000000e+00	662.0
19	TraesCS6B01G472600	chr2A	90.411	438	32	7	2610	3043	559619165	559619596	4.420000e-158	568.0
20	TraesCS6B01G472600	chr2A	81.250	288	31	10	2760	3043	678607195	678607463	8.580000e-51	211.0
21	TraesCS6B01G472600	chr5D	84.264	788	69	25	2106	2886	340397557	340398296	0.000000e+00	717.0
22	TraesCS6B01G472600	chr5D	82.285	604	98	7	1	603	454726461	454725866	5.840000e-142	514.0
23	TraesCS6B01G472600	chr5D	80.885	497	82	10	3	498	489780626	489780142	2.220000e-101	379.0
24	TraesCS6B01G472600	chr2B	87.858	593	58	11	2106	2694	636760795	636761377	0.000000e+00	684.0
25	TraesCS6B01G472600	chr2B	93.492	461	28	1	2263	2721	675368616	675369076	0.000000e+00	684.0
26	TraesCS6B01G472600	chr2B	92.428	449	29	5	2607	3053	675368918	675369363	1.190000e-178	636.0
27	TraesCS6B01G472600	chr2B	84.264	394	33	10	2654	3043	711869556	711869924	1.040000e-94	357.0
28	TraesCS6B01G472600	chr2B	90.728	151	12	2	2108	2256	675368340	675368490	1.860000e-47	200.0
29	TraesCS6B01G472600	chr3D	88.025	476	42	12	2318	2784	52819633	52819164	1.600000e-152	549.0
30	TraesCS6B01G472600	chr3B	80.929	603	104	7	1	603	174452463	174453054	1.660000e-127	466.0
31	TraesCS6B01G472600	chr2D	90.517	348	28	4	2287	2631	535476637	535476982	3.590000e-124	455.0
32	TraesCS6B01G472600	chr2D	72.676	355	59	27	2478	2808	498783252	498783592	1.950000e-12	84.2
33	TraesCS6B01G472600	chr3A	78.680	591	116	6	4	593	411378643	411379224	4.780000e-103	385.0
34	TraesCS6B01G472600	chr3A	78.405	514	92	13	30	539	742381313	742381811	1.770000e-82	316.0
35	TraesCS6B01G472600	chr1B	84.518	394	32	10	2654	3043	535691857	535692225	2.240000e-96	363.0
36	TraesCS6B01G472600	chr1B	82.633	357	40	12	2689	3043	679725012	679725348	2.300000e-76	296.0
37	TraesCS6B01G472600	chr1A	75.527	237	40	15	1537	1770	570226135	570226356	1.940000e-17	100.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G472600	chr6B	720232790	720235842	3052	False	5638.000000	5638	100.000000	1	3053	1	chr6B.!!$F1	3052
1	TraesCS6B01G472600	chr6B	720196400	720201589	5189	False	1206.333333	2056	94.285000	1	2079	3	chr6B.!!$F2	2078
2	TraesCS6B01G472600	chr6A	615543514	615545886	2372	False	954.000000	1688	92.431333	2	2083	3	chr6A.!!$F2	2081
3	TraesCS6B01G472600	chr6A	570490156	570490748	592	False	507.000000	507	82.119000	1	604	1	chr6A.!!$F1	603
4	TraesCS6B01G472600	chr6D	470665213	470666284	1071	False	1661.000000	1661	94.480000	997	2083	1	chr6D.!!$F1	1086
5	TraesCS6B01G472600	chr6D	316320314	316321123	809	True	520.500000	614	86.949000	2106	3029	2	chr6D.!!$R1	923
6	TraesCS6B01G472600	chr4B	437094479	437095261	782	True	1149.000000	1149	93.056000	2263	3053	1	chr4B.!!$R1	790
7	TraesCS6B01G472600	chr4B	508547030	508547924	894	False	750.500000	856	92.438500	2109	3053	2	chr4B.!!$F1	944
8	TraesCS6B01G472600	chr7B	648278927	648279820	893	False	742.000000	896	91.939500	2106	3053	2	chr7B.!!$F2	947
9	TraesCS6B01G472600	chr7B	616494425	616494992	567	False	425.000000	425	80.308000	1	583	1	chr7B.!!$F1	582
10	TraesCS6B01G472600	chr2A	559618710	559619596	886	False	731.000000	894	91.721000	2106	3043	2	chr2A.!!$F1	937
11	TraesCS6B01G472600	chr2A	678606702	678607463	761	False	436.500000	662	85.254500	2106	3043	2	chr2A.!!$F2	937
12	TraesCS6B01G472600	chr5D	340397557	340398296	739	False	717.000000	717	84.264000	2106	2886	1	chr5D.!!$F1	780
13	TraesCS6B01G472600	chr5D	454725866	454726461	595	True	514.000000	514	82.285000	1	603	1	chr5D.!!$R1	602
14	TraesCS6B01G472600	chr2B	636760795	636761377	582	False	684.000000	684	87.858000	2106	2694	1	chr2B.!!$F1	588
15	TraesCS6B01G472600	chr2B	675368340	675369363	1023	False	506.666667	684	92.216000	2108	3053	3	chr2B.!!$F3	945
16	TraesCS6B01G472600	chr3B	174452463	174453054	591	False	466.000000	466	80.929000	1	603	1	chr3B.!!$F1	602
17	TraesCS6B01G472600	chr3A	411378643	411379224	581	False	385.000000	385	78.680000	4	593	1	chr3A.!!$F1	589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
270	271	1.152652	TGTTGCCCCGGTGTGATTT	60.153	52.632	0.0	0.0	0.00	2.17	F
1949	5462	0.249120	TTGATGGGCGTCAAGATCGT	59.751	50.000	0.0	0.0	33.41	3.73	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1978	5491	0.037303	CAGGACTTGTGGTGGAGCAT	59.963	55.000	0.0	0.0	0.00	3.79	R
2775	6542	7.759433	GTGAAACCGGTTATTTGATGAAATGAT	59.241	33.333	22.6	0.0	33.63	2.45	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
206	207	1.517257	CCTGCGGCGTCTTAGTCAG	60.517	63.158	9.37	5.05	0.00	3.51
207	208	1.517257	CTGCGGCGTCTTAGTCAGG	60.517	63.158	9.37	0.00	0.00	3.86
208	209	2.214181	CTGCGGCGTCTTAGTCAGGT	62.214	60.000	9.37	0.00	0.00	4.00
209	210	1.516603	GCGGCGTCTTAGTCAGGTC	60.517	63.158	9.37	0.00	0.00	3.85
210	211	1.880894	CGGCGTCTTAGTCAGGTCA	59.119	57.895	0.00	0.00	0.00	4.02
249	250	6.256757	GGAATAGAGTTTGATAGTGTGTCTGC	59.743	42.308	0.00	0.00	0.00	4.26
270	271	1.152652	TGTTGCCCCGGTGTGATTT	60.153	52.632	0.00	0.00	0.00	2.17
697	701	6.385176	TCTTCAAACCAGACCTCATCATCTAT	59.615	38.462	0.00	0.00	0.00	1.98
1914	5427	3.870633	GAGGACAACTCGACCATAAGT	57.129	47.619	0.00	0.00	36.29	2.24
1949	5462	0.249120	TTGATGGGCGTCAAGATCGT	59.751	50.000	0.00	0.00	33.41	3.73
1959	5472	2.590276	CGTCAAGATCGTCAAGAACTCG	59.410	50.000	0.00	0.00	30.11	4.18
2013	5526	0.108186	CCTGCATCTACGAGTTGCCA	60.108	55.000	12.36	4.19	39.53	4.92
2015	5528	0.108186	TGCATCTACGAGTTGCCAGG	60.108	55.000	12.36	0.00	39.53	4.45
2025	5538	3.318384	TTGCCAGGCCGTGCTCTA	61.318	61.111	18.51	3.92	0.00	2.43
2055	5568	3.693085	ACGCTCTTCATGCTGATTGATTT	59.307	39.130	0.00	0.00	0.00	2.17
2083	5597	7.777095	AGTAGGAGCAGTAGATTTCTTTGTAG	58.223	38.462	0.00	0.00	0.00	2.74
2084	5598	5.423886	AGGAGCAGTAGATTTCTTTGTAGC	58.576	41.667	0.00	0.00	0.00	3.58
2085	5599	4.268884	GGAGCAGTAGATTTCTTTGTAGCG	59.731	45.833	0.00	0.00	0.00	4.26
2086	5600	4.822026	AGCAGTAGATTTCTTTGTAGCGT	58.178	39.130	0.00	0.00	0.00	5.07
2087	5601	4.865365	AGCAGTAGATTTCTTTGTAGCGTC	59.135	41.667	0.00	0.00	0.00	5.19
2088	5602	4.865365	GCAGTAGATTTCTTTGTAGCGTCT	59.135	41.667	0.00	0.00	0.00	4.18
2089	5603	6.034591	GCAGTAGATTTCTTTGTAGCGTCTA	58.965	40.000	0.00	0.00	0.00	2.59
2090	5604	6.197468	GCAGTAGATTTCTTTGTAGCGTCTAG	59.803	42.308	0.00	0.00	0.00	2.43
2091	5605	6.693545	CAGTAGATTTCTTTGTAGCGTCTAGG	59.306	42.308	0.00	0.00	0.00	3.02
2092	5606	5.662674	AGATTTCTTTGTAGCGTCTAGGT	57.337	39.130	0.00	0.00	0.00	3.08
2093	5607	5.652518	AGATTTCTTTGTAGCGTCTAGGTC	58.347	41.667	0.00	0.00	0.00	3.85
2094	5608	5.419471	AGATTTCTTTGTAGCGTCTAGGTCT	59.581	40.000	0.00	0.00	0.00	3.85
2095	5609	4.698583	TTCTTTGTAGCGTCTAGGTCTC	57.301	45.455	0.00	0.00	0.00	3.36
2096	5610	2.676839	TCTTTGTAGCGTCTAGGTCTCG	59.323	50.000	0.00	0.00	0.00	4.04
2097	5611	1.376543	TTGTAGCGTCTAGGTCTCGG	58.623	55.000	0.00	0.00	0.00	4.63
2098	5612	0.251354	TGTAGCGTCTAGGTCTCGGT	59.749	55.000	0.00	0.00	38.72	4.69
2099	5613	0.936600	GTAGCGTCTAGGTCTCGGTC	59.063	60.000	0.00	0.00	36.70	4.79
2100	5614	0.179062	TAGCGTCTAGGTCTCGGTCC	60.179	60.000	0.00	0.00	36.70	4.46
2101	5615	1.748122	GCGTCTAGGTCTCGGTCCA	60.748	63.158	0.00	0.00	0.00	4.02
2102	5616	1.991099	GCGTCTAGGTCTCGGTCCAC	61.991	65.000	0.00	0.00	0.00	4.02
2103	5617	1.375098	CGTCTAGGTCTCGGTCCACC	61.375	65.000	0.00	0.00	0.00	4.61
2251	5769	4.201940	TGTGTCAGACAATGTCAGCTTTTG	60.202	41.667	16.38	4.02	34.60	2.44
2267	5909	0.179073	TTTGCATAGCGGAGGAGAGC	60.179	55.000	0.00	0.00	0.00	4.09
2285	5929	0.391793	GCTAGGGGTGCAGAGAACAC	60.392	60.000	0.00	0.00	37.31	3.32
2644	6321	7.330262	TCATTTTCAAAAGATGGATTTAGGCC	58.670	34.615	0.00	0.00	0.00	5.19
2645	6322	5.675684	TTTCAAAAGATGGATTTAGGCCC	57.324	39.130	0.00	0.00	0.00	5.80
2646	6323	4.329638	TCAAAAGATGGATTTAGGCCCA	57.670	40.909	0.00	0.00	36.79	5.36
2647	6324	4.882559	TCAAAAGATGGATTTAGGCCCAT	58.117	39.130	0.00	0.00	45.22	4.00
2648	6325	5.279685	TCAAAAGATGGATTTAGGCCCATT	58.720	37.500	0.00	0.00	42.80	3.16
2649	6326	5.363580	TCAAAAGATGGATTTAGGCCCATTC	59.636	40.000	0.00	0.00	42.80	2.67
2650	6327	4.541250	AAGATGGATTTAGGCCCATTCA	57.459	40.909	0.00	0.00	42.80	2.57
2651	6328	4.541250	AGATGGATTTAGGCCCATTCAA	57.459	40.909	0.00	0.00	42.80	2.69
2652	6329	4.882559	AGATGGATTTAGGCCCATTCAAA	58.117	39.130	0.00	0.00	42.80	2.69
2653	6330	5.279685	AGATGGATTTAGGCCCATTCAAAA	58.720	37.500	0.00	0.00	42.80	2.44
2654	6331	5.907079	AGATGGATTTAGGCCCATTCAAAAT	59.093	36.000	0.00	0.00	42.80	1.82
2655	6332	6.387807	AGATGGATTTAGGCCCATTCAAAATT	59.612	34.615	0.00	0.00	42.80	1.82
2656	6333	6.385766	TGGATTTAGGCCCATTCAAAATTT	57.614	33.333	0.00	0.00	0.00	1.82
2657	6334	7.502060	TGGATTTAGGCCCATTCAAAATTTA	57.498	32.000	0.00	0.00	0.00	1.40
2658	6335	8.100135	TGGATTTAGGCCCATTCAAAATTTAT	57.900	30.769	0.00	0.00	0.00	1.40
2659	6336	8.555729	TGGATTTAGGCCCATTCAAAATTTATT	58.444	29.630	0.00	0.00	0.00	1.40
2660	6337	9.407380	GGATTTAGGCCCATTCAAAATTTATTT	57.593	29.630	0.00	0.00	0.00	1.40
2662	6339	9.972106	ATTTAGGCCCATTCAAAATTTATTTCA	57.028	25.926	0.00	0.00	0.00	2.69
2663	6340	8.785329	TTAGGCCCATTCAAAATTTATTTCAC	57.215	30.769	0.00	0.00	0.00	3.18
2664	6341	7.019656	AGGCCCATTCAAAATTTATTTCACT	57.980	32.000	0.00	0.00	0.00	3.41
2665	6342	7.105588	AGGCCCATTCAAAATTTATTTCACTC	58.894	34.615	0.00	0.00	0.00	3.51
2666	6343	6.878389	GGCCCATTCAAAATTTATTTCACTCA	59.122	34.615	0.00	0.00	0.00	3.41
2667	6344	7.553760	GGCCCATTCAAAATTTATTTCACTCAT	59.446	33.333	0.00	0.00	0.00	2.90
2668	6345	8.949177	GCCCATTCAAAATTTATTTCACTCATT	58.051	29.630	0.00	0.00	0.00	2.57
2684	6361	9.835389	TTTCACTCATTTTCAAAAGATGGATTT	57.165	25.926	0.00	0.00	0.00	2.17
2686	6363	9.912634	TCACTCATTTTCAAAAGATGGATTTAC	57.087	29.630	0.00	0.00	0.00	2.01
2687	6364	8.853345	CACTCATTTTCAAAAGATGGATTTACG	58.147	33.333	0.00	0.00	0.00	3.18
2688	6365	7.542130	ACTCATTTTCAAAAGATGGATTTACGC	59.458	33.333	0.00	0.00	0.00	4.42
2795	6563	8.700722	TTTCAATCATTTCATCAAATAACCGG	57.299	30.769	0.00	0.00	30.51	5.28
2902	6670	8.997621	AGCTAATTTCGTTTAGTTGATACTCA	57.002	30.769	0.00	0.00	35.78	3.41
2930	6698	8.366401	TGCCAAGAACTGATTTCAATTATTTCA	58.634	29.630	0.00	0.00	36.57	2.69
2996	6766	5.949233	AAAAACAATTTCACTCGCTTCAC	57.051	34.783	0.00	0.00	0.00	3.18
2999	6769	4.836125	ACAATTTCACTCGCTTCACAAT	57.164	36.364	0.00	0.00	0.00	2.71

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
206	207	1.296715	CTAGCACCACCACCTGACC	59.703	63.158	0.00	0.00	0.00	4.02
207	208	1.192146	TCCTAGCACCACCACCTGAC	61.192	60.000	0.00	0.00	0.00	3.51
208	209	0.472925	TTCCTAGCACCACCACCTGA	60.473	55.000	0.00	0.00	0.00	3.86
209	210	0.620556	ATTCCTAGCACCACCACCTG	59.379	55.000	0.00	0.00	0.00	4.00
210	211	2.119495	CTATTCCTAGCACCACCACCT	58.881	52.381	0.00	0.00	0.00	4.00
270	271	4.704540	AGGCGAAACCATTATCATTGAACA	59.295	37.500	0.00	0.00	43.14	3.18
383	384	2.890311	CACCACAATAGCCACCAAAGAA	59.110	45.455	0.00	0.00	0.00	2.52
435	436	3.366396	ACCGAAGAATCCTCTCTGCTTA	58.634	45.455	0.00	0.00	0.00	3.09
759	763	6.030228	CGACTTTTTGAAATATCCCTTCAGC	58.970	40.000	0.00	0.00	34.41	4.26
865	1160	0.109723	CAGGTCCTTTCCCCGTTCAA	59.890	55.000	0.00	0.00	0.00	2.69
1949	5462	2.257371	CCGACGGCGAGTTCTTGA	59.743	61.111	15.16	0.00	40.82	3.02
1978	5491	0.037303	CAGGACTTGTGGTGGAGCAT	59.963	55.000	0.00	0.00	0.00	3.79
2013	5526	2.190578	GCCATTAGAGCACGGCCT	59.809	61.111	0.00	0.00	38.67	5.19
2015	5528	0.880718	GTAGGCCATTAGAGCACGGC	60.881	60.000	5.01	0.00	44.10	5.68
2025	5538	1.959042	CATGAAGAGCGTAGGCCATT	58.041	50.000	5.01	0.00	41.24	3.16
2055	5568	7.178628	ACAAAGAAATCTACTGCTCCTACTACA	59.821	37.037	0.00	0.00	0.00	2.74
2083	5597	1.748122	TGGACCGAGACCTAGACGC	60.748	63.158	0.00	0.00	0.00	5.19
2084	5598	1.375098	GGTGGACCGAGACCTAGACG	61.375	65.000	0.00	0.00	0.00	4.18
2085	5599	2.491291	GGTGGACCGAGACCTAGAC	58.509	63.158	0.00	0.00	0.00	2.59
2251	5769	0.525761	CTAGCTCTCCTCCGCTATGC	59.474	60.000	0.00	0.00	38.01	3.14
2258	5898	2.137528	GCACCCCTAGCTCTCCTCC	61.138	68.421	0.00	0.00	0.00	4.30
2267	5909	1.066573	CAGTGTTCTCTGCACCCCTAG	60.067	57.143	0.00	0.00	37.56	3.02
2425	6071	9.559732	TCTTGTCATCACGATTCCAAATATATT	57.440	29.630	0.00	0.00	0.00	1.28
2658	6335	9.835389	AAATCCATCTTTTGAAAATGAGTGAAA	57.165	25.926	0.00	0.00	0.00	2.69
2660	6337	9.912634	GTAAATCCATCTTTTGAAAATGAGTGA	57.087	29.630	0.00	0.00	0.00	3.41
2661	6338	8.853345	CGTAAATCCATCTTTTGAAAATGAGTG	58.147	33.333	0.00	0.00	0.00	3.51
2662	6339	7.542130	GCGTAAATCCATCTTTTGAAAATGAGT	59.458	33.333	0.00	0.00	0.00	3.41
2663	6340	7.756722	AGCGTAAATCCATCTTTTGAAAATGAG	59.243	33.333	0.00	0.00	0.00	2.90
2664	6341	7.601856	AGCGTAAATCCATCTTTTGAAAATGA	58.398	30.769	0.00	0.00	0.00	2.57
2665	6342	7.541783	TGAGCGTAAATCCATCTTTTGAAAATG	59.458	33.333	0.00	0.00	0.00	2.32
2666	6343	7.601856	TGAGCGTAAATCCATCTTTTGAAAAT	58.398	30.769	0.00	0.00	0.00	1.82
2667	6344	6.976088	TGAGCGTAAATCCATCTTTTGAAAA	58.024	32.000	0.00	0.00	0.00	2.29
2668	6345	6.567687	TGAGCGTAAATCCATCTTTTGAAA	57.432	33.333	0.00	0.00	0.00	2.69
2669	6346	6.757897	ATGAGCGTAAATCCATCTTTTGAA	57.242	33.333	0.00	0.00	0.00	2.69
2670	6347	6.374053	TGAATGAGCGTAAATCCATCTTTTGA	59.626	34.615	0.00	0.00	0.00	2.69
2671	6348	6.554419	TGAATGAGCGTAAATCCATCTTTTG	58.446	36.000	0.00	0.00	0.00	2.44
2672	6349	6.757897	TGAATGAGCGTAAATCCATCTTTT	57.242	33.333	0.00	0.00	0.00	2.27
2673	6350	6.757897	TTGAATGAGCGTAAATCCATCTTT	57.242	33.333	0.00	0.00	0.00	2.52
2674	6351	6.757897	TTTGAATGAGCGTAAATCCATCTT	57.242	33.333	0.00	0.00	0.00	2.40
2675	6352	6.757897	TTTTGAATGAGCGTAAATCCATCT	57.242	33.333	0.00	0.00	0.00	2.90
2676	6353	7.992180	AATTTTGAATGAGCGTAAATCCATC	57.008	32.000	0.00	0.00	0.00	3.51
2678	6355	9.868277	AATAAATTTTGAATGAGCGTAAATCCA	57.132	25.926	0.00	0.00	0.00	3.41
2683	6360	9.684448	TGTGAAATAAATTTTGAATGAGCGTAA	57.316	25.926	0.00	0.00	0.00	3.18
2684	6361	9.123709	GTGTGAAATAAATTTTGAATGAGCGTA	57.876	29.630	0.00	0.00	0.00	4.42
2685	6362	7.651304	TGTGTGAAATAAATTTTGAATGAGCGT	59.349	29.630	0.00	0.00	0.00	5.07
2686	6363	8.005662	TGTGTGAAATAAATTTTGAATGAGCG	57.994	30.769	0.00	0.00	0.00	5.03
2775	6542	7.759433	GTGAAACCGGTTATTTGATGAAATGAT	59.241	33.333	22.60	0.00	33.63	2.45
2789	6557	8.885722	GTTATATCAAATGAGTGAAACCGGTTA	58.114	33.333	22.60	2.14	37.80	2.85
2902	6670	9.729281	AAATAATTGAAATCAGTTCTTGGCATT	57.271	25.926	0.00	0.00	37.13	3.56

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.