Multiple sequence alignment - TraesCS6B01G469700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G469700 chr6B 100.000 5262 0 0 602 5863 718348266 718343005 0.000000e+00 9718.0
1 TraesCS6B01G469700 chr6B 100.000 266 0 0 1 266 718348867 718348602 5.280000e-135 492.0
2 TraesCS6B01G469700 chr6B 92.500 40 1 2 66 104 718349155 718349193 8.210000e-04 56.5
3 TraesCS6B01G469700 chr6A 91.466 1992 100 35 3399 5343 616831854 616833822 0.000000e+00 2673.0
4 TraesCS6B01G469700 chr6A 84.040 1109 87 37 2325 3381 616830799 616831869 0.000000e+00 985.0
5 TraesCS6B01G469700 chr6A 82.438 689 66 31 1310 1959 616829869 616830541 8.590000e-153 551.0
6 TraesCS6B01G469700 chr6A 86.466 266 13 9 2056 2302 616830542 616830803 2.690000e-68 270.0
7 TraesCS6B01G469700 chr6A 82.555 321 24 13 838 1158 616829562 616829850 2.710000e-63 254.0
8 TraesCS6B01G469700 chr6A 87.838 148 7 6 700 841 616829294 616829436 4.700000e-36 163.0
9 TraesCS6B01G469700 chr6A 82.759 145 12 6 2564 2698 280114709 280114850 3.710000e-22 117.0
10 TraesCS6B01G469700 chr6A 97.619 42 0 1 633 674 616829203 616829243 2.930000e-08 71.3
11 TraesCS6B01G469700 chr5D 93.622 1568 85 9 3399 4959 546303051 546304610 0.000000e+00 2327.0
12 TraesCS6B01G469700 chr5D 87.086 875 66 31 2533 3381 546302213 546303066 0.000000e+00 946.0
13 TraesCS6B01G469700 chr5D 94.584 517 26 1 5343 5859 546311633 546312147 0.000000e+00 798.0
14 TraesCS6B01G469700 chr5D 92.381 210 10 2 2293 2502 546302011 546302214 1.600000e-75 294.0
15 TraesCS6B01G469700 chr5D 82.770 296 24 8 4997 5291 546306436 546306705 7.590000e-59 239.0
16 TraesCS6B01G469700 chr6D 93.819 1440 66 9 3538 4971 472978561 472977139 0.000000e+00 2145.0
17 TraesCS6B01G469700 chr6D 87.151 1183 68 36 2054 3186 472979965 472978817 0.000000e+00 1266.0
18 TraesCS6B01G469700 chr6D 95.010 521 23 2 5343 5863 472972663 472972146 0.000000e+00 815.0
19 TraesCS6B01G469700 chr6D 85.526 684 66 20 1307 1960 472980644 472979964 0.000000e+00 684.0
20 TraesCS6B01G469700 chr6D 81.790 648 57 33 687 1304 472981322 472980706 2.460000e-133 486.0
21 TraesCS6B01G469700 chr6D 85.835 473 26 16 2458 2903 472973753 472973295 1.150000e-126 464.0
22 TraesCS6B01G469700 chr6D 90.000 270 22 2 5074 5343 472977031 472976767 1.560000e-90 344.0
23 TraesCS6B01G469700 chr6D 89.333 150 12 3 10 155 472981622 472981473 1.000000e-42 185.0
24 TraesCS6B01G469700 chr6D 82.394 142 18 7 2562 2698 326121572 326121711 3.710000e-22 117.0
25 TraesCS6B01G469700 chr6D 96.491 57 0 1 617 673 472981422 472981368 6.260000e-15 93.5
26 TraesCS6B01G469700 chr7A 82.250 1200 189 14 3664 4840 209403163 209401965 0.000000e+00 1014.0
27 TraesCS6B01G469700 chr7A 85.465 172 17 5 5511 5682 744403 744566 7.810000e-39 172.0
28 TraesCS6B01G469700 chr7D 82.167 1172 189 12 3688 4840 199478446 199477276 0.000000e+00 989.0
29 TraesCS6B01G469700 chr7D 81.690 142 16 8 2566 2698 593979486 593979346 6.210000e-20 110.0
30 TraesCS6B01G469700 chr7B 81.640 1171 197 10 3688 4840 164076086 164074916 0.000000e+00 955.0
31 TraesCS6B01G469700 chr7B 96.396 111 3 1 1947 2056 41171718 41171608 1.300000e-41 182.0
32 TraesCS6B01G469700 chr7B 83.523 176 22 2 5511 5686 547264723 547264891 2.190000e-34 158.0
33 TraesCS6B01G469700 chr7B 85.593 118 12 5 2585 2698 58188548 58188664 1.030000e-22 119.0
34 TraesCS6B01G469700 chr4B 80.586 1195 209 12 3662 4840 615251123 615252310 0.000000e+00 900.0
35 TraesCS6B01G469700 chr4B 78.683 1215 234 17 3661 4858 615253259 615254465 0.000000e+00 785.0
36 TraesCS6B01G469700 chr4D 79.685 1206 225 12 3667 4858 484046772 484047971 0.000000e+00 852.0
37 TraesCS6B01G469700 chr5A 79.604 1211 228 8 3662 4858 664266272 664267477 0.000000e+00 850.0
38 TraesCS6B01G469700 chr3B 99.038 104 1 0 1956 2059 560117400 560117297 2.790000e-43 187.0
39 TraesCS6B01G469700 chr3B 99.029 103 1 0 1955 2057 490924658 490924556 1.000000e-42 185.0
40 TraesCS6B01G469700 chr3B 85.380 171 17 3 5517 5686 743112578 743112415 2.810000e-38 171.0
41 TraesCS6B01G469700 chr1B 98.113 106 2 0 1953 2058 415223386 415223281 1.000000e-42 185.0
42 TraesCS6B01G469700 chr1B 79.545 220 21 12 5468 5686 611692423 611692619 1.020000e-27 135.0
43 TraesCS6B01G469700 chr2B 99.020 102 1 0 1959 2060 506212546 506212445 3.610000e-42 183.0
44 TraesCS6B01G469700 chr2B 93.600 125 5 3 1949 2071 764831166 764831289 3.610000e-42 183.0
45 TraesCS6B01G469700 chr2B 96.364 110 4 0 1950 2059 12876174 12876065 1.300000e-41 182.0
46 TraesCS6B01G469700 chr2B 83.616 177 21 4 5511 5686 35380693 35380862 6.080000e-35 159.0
47 TraesCS6B01G469700 chr2B 83.051 177 22 3 5511 5686 34575630 34575799 2.830000e-33 154.0
48 TraesCS6B01G469700 chr2A 100.000 99 0 0 1958 2056 92494523 92494425 3.610000e-42 183.0
49 TraesCS6B01G469700 chr4A 95.536 112 4 1 1947 2058 715457017 715457127 1.680000e-40 178.0
50 TraesCS6B01G469700 chr3D 82.353 221 21 7 5466 5686 380257752 380257550 6.040000e-40 176.0
51 TraesCS6B01G469700 chr3D 86.066 122 8 6 2585 2698 199216413 199216293 7.980000e-24 122.0
52 TraesCS6B01G469700 chr3D 92.647 68 5 0 4488 4555 7229207 7229274 1.340000e-16 99.0
53 TraesCS6B01G469700 chr3D 84.058 69 11 0 4487 4555 590524707 590524639 3.790000e-07 67.6
54 TraesCS6B01G469700 chr3D 94.872 39 2 0 4490 4528 360589894 360589932 1.760000e-05 62.1
55 TraesCS6B01G469700 chr1D 84.028 144 13 8 2564 2698 137147319 137147461 4.770000e-26 130.0
56 TraesCS6B01G469700 chr2D 82.639 144 15 8 2564 2698 581016268 581016126 1.030000e-22 119.0
57 TraesCS6B01G469700 chr2D 81.250 144 17 7 2564 2698 159381212 159381070 2.230000e-19 108.0
58 TraesCS6B01G469700 chr3A 87.879 99 10 2 2564 2661 743023272 743023175 1.340000e-21 115.0
59 TraesCS6B01G469700 chr3A 89.706 68 7 0 4488 4555 13034021 13033954 2.910000e-13 87.9
60 TraesCS6B01G469700 chr5B 92.000 50 4 0 2701 2750 578813816 578813865 2.930000e-08 71.3
61 TraesCS6B01G469700 chrUn 100.000 29 0 0 2896 2924 469692343 469692315 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G469700 chr6B 718343005 718348867 5862 True 5105.000000 9718 100.000000 1 5863 2 chr6B.!!$R1 5862
1 TraesCS6B01G469700 chr6A 616829203 616833822 4619 False 709.614286 2673 87.488857 633 5343 7 chr6A.!!$F2 4710
2 TraesCS6B01G469700 chr5D 546302011 546306705 4694 False 951.500000 2327 88.964750 2293 5291 4 chr5D.!!$F2 2998
3 TraesCS6B01G469700 chr5D 546311633 546312147 514 False 798.000000 798 94.584000 5343 5859 1 chr5D.!!$F1 516
4 TraesCS6B01G469700 chr6D 472972146 472981622 9476 True 720.277778 2145 89.439444 10 5863 9 chr6D.!!$R1 5853
5 TraesCS6B01G469700 chr7A 209401965 209403163 1198 True 1014.000000 1014 82.250000 3664 4840 1 chr7A.!!$R1 1176
6 TraesCS6B01G469700 chr7D 199477276 199478446 1170 True 989.000000 989 82.167000 3688 4840 1 chr7D.!!$R1 1152
7 TraesCS6B01G469700 chr7B 164074916 164076086 1170 True 955.000000 955 81.640000 3688 4840 1 chr7B.!!$R2 1152
8 TraesCS6B01G469700 chr4B 615251123 615254465 3342 False 842.500000 900 79.634500 3661 4858 2 chr4B.!!$F1 1197
9 TraesCS6B01G469700 chr4D 484046772 484047971 1199 False 852.000000 852 79.685000 3667 4858 1 chr4D.!!$F1 1191
10 TraesCS6B01G469700 chr5A 664266272 664267477 1205 False 850.000000 850 79.604000 3662 4858 1 chr5A.!!$F1 1196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 1140 0.322008 ACTGGAGCAAGCAAGCTACC 60.322 55.0 9.80 9.93 45.15 3.18 F
1805 2126 0.250381 GATGGGATGGAGCAGAGCAG 60.250 60.0 0.00 0.00 0.00 4.24 F
2061 2382 0.529992 GACGGAGGGAGTATTTGCGG 60.530 60.0 0.00 0.00 0.00 5.69 F
3299 3749 0.845102 AATGGGAAGGGGTTCCTCGT 60.845 55.0 4.23 0.00 44.07 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 2361 0.179054 GCAAATACTCCCTCCGTCCC 60.179 60.0 0.00 0.0 0.00 4.46 R
2762 3113 0.250727 TGTTAGACTGCCCAAGTGCC 60.251 55.0 0.00 0.0 40.07 5.01 R
3424 3875 0.463620 GCTGAGTGGCCCAAACAAAA 59.536 50.0 0.00 0.0 0.00 2.44 R
4989 7633 0.172803 AAGTGTCATCTCCGGCGTAC 59.827 55.0 6.01 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.651704 ACAAAACCTCCAATAAAGTTGAAATCG 59.348 33.333 0.00 0.00 0.00 3.34
27 28 5.310720 ACCTCCAATAAAGTTGAAATCGC 57.689 39.130 0.00 0.00 0.00 4.58
28 29 4.764823 ACCTCCAATAAAGTTGAAATCGCA 59.235 37.500 0.00 0.00 0.00 5.10
102 107 9.983431 CGGAAACAAATAAAATTTTACTCGAAC 57.017 29.630 12.74 3.34 0.00 3.95
113 118 2.093306 TACTCGAACTTCGTACGGGA 57.907 50.000 16.52 3.70 41.35 5.14
151 156 9.431887 TGGATCACTGTACTGTTTAAAAGATAC 57.568 33.333 2.16 3.75 0.00 2.24
158 163 9.286946 CTGTACTGTTTAAAAGATACTACTCCG 57.713 37.037 0.00 0.00 0.00 4.63
159 164 9.013229 TGTACTGTTTAAAAGATACTACTCCGA 57.987 33.333 0.00 0.00 0.00 4.55
177 182 9.522804 CTACTCCGATATTTATATGGAAGAAGC 57.477 37.037 0.00 0.00 0.00 3.86
178 183 7.036220 ACTCCGATATTTATATGGAAGAAGCG 58.964 38.462 0.00 0.00 0.00 4.68
179 184 6.931838 TCCGATATTTATATGGAAGAAGCGT 58.068 36.000 0.00 0.00 0.00 5.07
180 185 7.383687 TCCGATATTTATATGGAAGAAGCGTT 58.616 34.615 0.00 0.00 0.00 4.84
181 186 7.330946 TCCGATATTTATATGGAAGAAGCGTTG 59.669 37.037 0.00 0.00 0.00 4.10
182 187 7.413000 CCGATATTTATATGGAAGAAGCGTTGG 60.413 40.741 0.00 0.00 0.00 3.77
194 199 5.607119 AGAAGCGTTGGTTATAACAAGTG 57.393 39.130 17.16 3.90 0.00 3.16
195 200 5.302360 AGAAGCGTTGGTTATAACAAGTGA 58.698 37.500 17.16 0.00 0.00 3.41
196 201 5.761234 AGAAGCGTTGGTTATAACAAGTGAA 59.239 36.000 17.16 0.00 0.00 3.18
197 202 6.430000 AGAAGCGTTGGTTATAACAAGTGAAT 59.570 34.615 17.16 0.00 0.00 2.57
198 203 7.604927 AGAAGCGTTGGTTATAACAAGTGAATA 59.395 33.333 17.16 0.00 0.00 1.75
199 204 7.859325 AGCGTTGGTTATAACAAGTGAATAT 57.141 32.000 17.16 0.00 0.00 1.28
200 205 8.276252 AGCGTTGGTTATAACAAGTGAATATT 57.724 30.769 17.16 0.00 0.00 1.28
201 206 8.181573 AGCGTTGGTTATAACAAGTGAATATTG 58.818 33.333 17.16 0.00 0.00 1.90
202 207 7.044314 GCGTTGGTTATAACAAGTGAATATTGC 60.044 37.037 17.16 2.48 0.00 3.56
203 208 7.965655 CGTTGGTTATAACAAGTGAATATTGCA 59.034 33.333 17.16 0.00 0.00 4.08
204 209 9.289303 GTTGGTTATAACAAGTGAATATTGCAG 57.711 33.333 17.16 0.00 0.00 4.41
205 210 7.479980 TGGTTATAACAAGTGAATATTGCAGC 58.520 34.615 17.16 0.00 0.00 5.25
206 211 7.121907 TGGTTATAACAAGTGAATATTGCAGCA 59.878 33.333 17.16 0.00 0.00 4.41
207 212 7.432252 GGTTATAACAAGTGAATATTGCAGCAC 59.568 37.037 17.16 0.00 0.00 4.40
214 219 1.314534 AATATTGCAGCACGCCAGCA 61.315 50.000 0.00 2.97 41.33 4.41
220 225 4.074526 AGCACGCCAGCACGATCT 62.075 61.111 0.00 0.00 36.85 2.75
249 254 2.594536 TGGTGCTGCCACAGTTGA 59.405 55.556 0.00 0.00 43.61 3.18
250 255 1.151221 TGGTGCTGCCACAGTTGAT 59.849 52.632 0.00 0.00 43.61 2.57
251 256 0.399833 TGGTGCTGCCACAGTTGATA 59.600 50.000 0.00 0.00 43.61 2.15
252 257 1.004628 TGGTGCTGCCACAGTTGATAT 59.995 47.619 0.00 0.00 43.61 1.63
253 258 1.672881 GGTGCTGCCACAGTTGATATC 59.327 52.381 0.00 0.00 43.88 1.63
254 259 2.358957 GTGCTGCCACAGTTGATATCA 58.641 47.619 0.00 0.00 41.67 2.15
255 260 2.749076 GTGCTGCCACAGTTGATATCAA 59.251 45.455 14.23 14.23 41.67 2.57
256 261 3.426695 GTGCTGCCACAGTTGATATCAAC 60.427 47.826 32.38 32.38 43.67 3.18
633 638 0.583438 CAACGCTGAGAAGGTGTGTG 59.417 55.000 0.00 0.00 0.00 3.82
634 639 0.464036 AACGCTGAGAAGGTGTGTGA 59.536 50.000 0.00 0.00 0.00 3.58
674 679 1.517832 GTAGTCCATGGCGCTCTGT 59.482 57.895 6.96 0.00 0.00 3.41
676 681 1.676678 TAGTCCATGGCGCTCTGTCC 61.677 60.000 6.96 0.00 0.00 4.02
678 683 2.191375 CCATGGCGCTCTGTCCAT 59.809 61.111 7.64 0.00 43.45 3.41
680 685 2.191375 ATGGCGCTCTGTCCATGG 59.809 61.111 7.64 4.97 41.26 3.66
684 689 0.882042 GGCGCTCTGTCCATGGTATG 60.882 60.000 12.58 3.00 0.00 2.39
730 784 3.885724 TCGATGTTCACCATTAGAGCA 57.114 42.857 0.00 0.00 32.56 4.26
731 785 4.200838 TCGATGTTCACCATTAGAGCAA 57.799 40.909 0.00 0.00 32.56 3.91
768 827 2.881074 CATGGGAGTTAGTGACTGACG 58.119 52.381 1.68 0.00 39.19 4.35
775 834 2.228343 AGTTAGTGACTGACGGTACTGC 59.772 50.000 0.23 0.00 37.17 4.40
776 835 2.195741 TAGTGACTGACGGTACTGCT 57.804 50.000 0.23 0.00 0.00 4.24
777 836 0.598562 AGTGACTGACGGTACTGCTG 59.401 55.000 0.23 1.92 0.00 4.41
778 837 0.388649 GTGACTGACGGTACTGCTGG 60.389 60.000 0.23 0.00 0.00 4.85
779 838 0.538746 TGACTGACGGTACTGCTGGA 60.539 55.000 0.23 0.00 0.00 3.86
850 1038 3.423645 GCGTTTGACAGTATGCTTCACTC 60.424 47.826 0.00 0.00 42.53 3.51
885 1081 6.198639 CCCATAAGTAGGAGGAGTATGCTAT 58.801 44.000 0.00 0.00 36.27 2.97
886 1082 7.036059 ACCCATAAGTAGGAGGAGTATGCTATA 60.036 40.741 0.00 0.00 36.27 1.31
888 1084 8.056400 CCATAAGTAGGAGGAGTATGCTATACT 58.944 40.741 8.09 8.09 36.27 2.12
891 1087 7.817910 AGTAGGAGGAGTATGCTATACTACT 57.182 40.000 16.39 16.39 40.83 2.57
892 1088 8.914213 AGTAGGAGGAGTATGCTATACTACTA 57.086 38.462 14.98 7.67 42.42 1.82
893 1089 8.761689 AGTAGGAGGAGTATGCTATACTACTAC 58.238 40.741 16.98 16.98 42.42 2.73
894 1090 7.817910 AGGAGGAGTATGCTATACTACTACT 57.182 40.000 19.74 19.74 43.26 2.57
895 1091 8.914213 AGGAGGAGTATGCTATACTACTACTA 57.086 38.462 22.21 0.00 45.54 1.82
896 1092 8.984855 AGGAGGAGTATGCTATACTACTACTAG 58.015 40.741 22.21 0.00 45.54 2.57
897 1093 7.712205 GGAGGAGTATGCTATACTACTACTAGC 59.288 44.444 17.24 8.46 38.89 3.42
933 1129 2.357050 CCCACCATTATTCACTGGAGCA 60.357 50.000 0.00 0.00 36.35 4.26
937 1133 3.018856 CCATTATTCACTGGAGCAAGCA 58.981 45.455 0.00 0.00 34.24 3.91
944 1140 0.322008 ACTGGAGCAAGCAAGCTACC 60.322 55.000 9.80 9.93 45.15 3.18
962 1158 3.340814 ACCAAGTGATCAAGCCAGTAG 57.659 47.619 0.00 0.00 0.00 2.57
969 1165 2.165641 TGATCAAGCCAGTAGGTACGTG 59.834 50.000 0.00 0.00 37.19 4.49
992 1188 3.847709 GCACAAGAGCGAGCGAGC 61.848 66.667 0.00 0.00 37.41 5.03
993 1189 3.540014 CACAAGAGCGAGCGAGCG 61.540 66.667 0.00 0.00 43.00 5.03
994 1190 3.738246 ACAAGAGCGAGCGAGCGA 61.738 61.111 1.41 0.00 43.00 4.93
995 1191 2.948648 CAAGAGCGAGCGAGCGAG 60.949 66.667 1.41 0.00 43.00 5.03
996 1192 4.845705 AAGAGCGAGCGAGCGAGC 62.846 66.667 9.12 9.12 43.00 5.03
1056 1268 3.844090 GTGAGCGGAGGAGGAGCC 61.844 72.222 0.00 0.00 0.00 4.70
1087 1299 0.534873 GTGTCTCCTGCTTCCTCTCC 59.465 60.000 0.00 0.00 0.00 3.71
1101 1313 3.878519 CTCCTCGTCCTCGCCGTC 61.879 72.222 0.00 0.00 36.96 4.79
1161 1373 7.489757 CACAGTAAGTGCTCTCTCTAAATTACC 59.510 40.741 0.00 0.00 42.15 2.85
1162 1374 7.178628 ACAGTAAGTGCTCTCTCTAAATTACCA 59.821 37.037 0.00 0.00 0.00 3.25
1165 1377 4.113354 GTGCTCTCTCTAAATTACCACCG 58.887 47.826 0.00 0.00 0.00 4.94
1168 1380 4.599047 CTCTCTCTAAATTACCACCGACG 58.401 47.826 0.00 0.00 0.00 5.12
1185 1401 1.798813 GACGACTCGCCAACAAGAAAT 59.201 47.619 0.00 0.00 0.00 2.17
1191 1407 3.758554 ACTCGCCAACAAGAAATATGCTT 59.241 39.130 0.00 0.00 0.00 3.91
1198 1414 6.625740 GCCAACAAGAAATATGCTTGAGCTTA 60.626 38.462 19.73 2.95 44.16 3.09
1199 1415 7.315142 CCAACAAGAAATATGCTTGAGCTTAA 58.685 34.615 19.73 0.00 44.16 1.85
1200 1416 7.977853 CCAACAAGAAATATGCTTGAGCTTAAT 59.022 33.333 19.73 0.00 44.16 1.40
1201 1417 9.362539 CAACAAGAAATATGCTTGAGCTTAATT 57.637 29.630 19.73 2.18 44.16 1.40
1214 1430 3.747193 AGCTTAATTTTGTCGCATCACG 58.253 40.909 0.00 0.00 45.62 4.35
1274 1490 9.794719 TGATATATAGTAGAATCCGGTCCATAG 57.205 37.037 0.00 0.00 0.00 2.23
1299 1515 8.778358 AGATCGTTTTTATGGAGAAGATAATGC 58.222 33.333 0.00 0.00 0.00 3.56
1304 1520 9.508567 GTTTTTATGGAGAAGATAATGCTTGAC 57.491 33.333 0.00 0.00 0.00 3.18
1305 1521 8.806429 TTTTATGGAGAAGATAATGCTTGACA 57.194 30.769 0.00 0.00 0.00 3.58
1324 1599 2.840651 ACAAGATCGATCCCTCACCTTT 59.159 45.455 21.66 4.19 0.00 3.11
1345 1626 1.137086 AGATTGACAAGATCGACCCGG 59.863 52.381 0.00 0.00 0.00 5.73
1384 1665 4.060205 TGTTACCTTGAGCGTACCTTTTC 58.940 43.478 0.00 0.00 0.00 2.29
1403 1684 6.640907 CCTTTTCGAGAAATCAATCGGTTTTT 59.359 34.615 0.00 0.00 39.38 1.94
1408 1689 7.812648 TCGAGAAATCAATCGGTTTTTATGTT 58.187 30.769 0.00 0.00 39.38 2.71
1427 1708 4.348656 TGTTAGTAGTATTCTTGAGCGCG 58.651 43.478 0.00 0.00 0.00 6.86
1444 1730 2.469826 CGCGTATTGCTGGTTCATCTA 58.530 47.619 0.00 0.00 43.27 1.98
1454 1740 1.206132 TGGTTCATCTATTGCGACCGT 59.794 47.619 0.00 0.00 35.31 4.83
1458 1744 1.002792 TCATCTATTGCGACCGTCGAG 60.003 52.381 24.78 12.49 43.74 4.04
1488 1774 9.113876 GTATATATTTGTGGTTTTGCTAATCGC 57.886 33.333 0.00 0.00 39.77 4.58
1517 1803 3.868077 CCTGAAATTTTTGTTGGCGTCAA 59.132 39.130 0.00 0.00 0.00 3.18
1561 1847 0.393077 AGGTGTGGGAAACGTGAGAG 59.607 55.000 0.00 0.00 0.00 3.20
1642 1928 3.488090 GGTGCAAGCTACGGCGTC 61.488 66.667 19.21 2.33 44.37 5.19
1672 1958 2.743636 CTAAGGAAGCAGGTTCACGA 57.256 50.000 14.26 0.00 36.82 4.35
1677 1963 1.891060 GAAGCAGGTTCACGAGTGCG 61.891 60.000 7.51 0.00 40.97 5.34
1682 1968 1.173444 AGGTTCACGAGTGCGAGTCT 61.173 55.000 0.00 0.00 41.64 3.24
1686 1973 2.282251 ACGAGTGCGAGTCTGGGA 60.282 61.111 0.00 0.00 41.64 4.37
1691 1978 4.056125 TGCGAGTCTGGGAGTGCG 62.056 66.667 0.00 0.00 0.00 5.34
1694 1981 2.680352 GAGTCTGGGAGTGCGGGA 60.680 66.667 0.00 0.00 0.00 5.14
1710 1998 2.280592 GAGCCGTCGGTGTTGGTT 60.281 61.111 13.94 0.00 0.00 3.67
1740 2028 1.069935 GGCTTAGAGGGATGGTCGC 59.930 63.158 0.00 0.00 0.00 5.19
1756 2044 2.376538 CGCGGCGACAACATGTACA 61.377 57.895 19.16 0.00 0.00 2.90
1757 2045 1.692148 CGCGGCGACAACATGTACAT 61.692 55.000 19.16 1.41 0.00 2.29
1759 2047 1.355005 CGGCGACAACATGTACATCA 58.645 50.000 5.07 0.00 0.00 3.07
1760 2048 1.729517 CGGCGACAACATGTACATCAA 59.270 47.619 5.07 0.00 0.00 2.57
1761 2049 2.351418 CGGCGACAACATGTACATCAAT 59.649 45.455 5.07 0.00 0.00 2.57
1763 2051 3.100817 GCGACAACATGTACATCAATGC 58.899 45.455 5.07 2.18 0.00 3.56
1764 2052 3.426025 GCGACAACATGTACATCAATGCA 60.426 43.478 5.07 0.00 0.00 3.96
1765 2053 4.731483 GCGACAACATGTACATCAATGCAT 60.731 41.667 5.07 0.00 0.00 3.96
1766 2054 4.731480 CGACAACATGTACATCAATGCATG 59.269 41.667 5.07 2.61 42.93 4.06
1767 2055 5.001237 ACAACATGTACATCAATGCATGG 57.999 39.130 5.07 0.00 41.94 3.66
1793 2114 1.690219 GAGAGGCACACGGATGGGAT 61.690 60.000 0.00 0.00 0.00 3.85
1801 2122 1.383109 ACGGATGGGATGGAGCAGA 60.383 57.895 0.00 0.00 0.00 4.26
1802 2123 1.370437 CGGATGGGATGGAGCAGAG 59.630 63.158 0.00 0.00 0.00 3.35
1803 2124 1.072852 GGATGGGATGGAGCAGAGC 59.927 63.158 0.00 0.00 0.00 4.09
1804 2125 1.703014 GGATGGGATGGAGCAGAGCA 61.703 60.000 0.00 0.00 0.00 4.26
1805 2126 0.250381 GATGGGATGGAGCAGAGCAG 60.250 60.000 0.00 0.00 0.00 4.24
1817 2138 2.282040 GAGCAGGCAGGCAGTTGT 60.282 61.111 0.00 0.00 35.83 3.32
1818 2139 2.596631 AGCAGGCAGGCAGTTGTG 60.597 61.111 0.00 0.00 35.83 3.33
1827 2148 3.443045 GCAGTTGTGCGGGATGGG 61.443 66.667 0.00 0.00 40.71 4.00
1835 2156 1.032114 GTGCGGGATGGGGAAGAAAG 61.032 60.000 0.00 0.00 0.00 2.62
1862 2183 4.574674 TTCAAGATGAACAGTATGGCCT 57.425 40.909 3.32 0.00 43.62 5.19
1903 2224 3.199677 CGATCCAACCGCCTAACAATTA 58.800 45.455 0.00 0.00 0.00 1.40
1953 2274 4.286032 ACTGATAAATAGGCGCTCCCATAA 59.714 41.667 7.64 0.00 35.39 1.90
1959 2280 5.950544 AATAGGCGCTCCCATAACATATA 57.049 39.130 7.64 0.00 35.39 0.86
1960 2281 3.611766 AGGCGCTCCCATAACATATAC 57.388 47.619 7.64 0.00 35.39 1.47
1961 2282 3.173965 AGGCGCTCCCATAACATATACT 58.826 45.455 7.64 0.00 35.39 2.12
1962 2283 3.195825 AGGCGCTCCCATAACATATACTC 59.804 47.826 7.64 0.00 35.39 2.59
1963 2284 3.522553 GCGCTCCCATAACATATACTCC 58.477 50.000 0.00 0.00 0.00 3.85
1964 2285 3.679083 GCGCTCCCATAACATATACTCCC 60.679 52.174 0.00 0.00 0.00 4.30
1965 2286 3.769844 CGCTCCCATAACATATACTCCCT 59.230 47.826 0.00 0.00 0.00 4.20
1966 2287 4.142138 CGCTCCCATAACATATACTCCCTC 60.142 50.000 0.00 0.00 0.00 4.30
1967 2288 4.162509 GCTCCCATAACATATACTCCCTCC 59.837 50.000 0.00 0.00 0.00 4.30
1968 2289 4.350245 TCCCATAACATATACTCCCTCCG 58.650 47.826 0.00 0.00 0.00 4.63
1969 2290 4.094476 CCCATAACATATACTCCCTCCGT 58.906 47.826 0.00 0.00 0.00 4.69
1970 2291 4.159879 CCCATAACATATACTCCCTCCGTC 59.840 50.000 0.00 0.00 0.00 4.79
1971 2292 4.159879 CCATAACATATACTCCCTCCGTCC 59.840 50.000 0.00 0.00 0.00 4.79
1972 2293 2.305858 ACATATACTCCCTCCGTCCC 57.694 55.000 0.00 0.00 0.00 4.46
1973 2294 1.502039 ACATATACTCCCTCCGTCCCA 59.498 52.381 0.00 0.00 0.00 4.37
1974 2295 2.090943 ACATATACTCCCTCCGTCCCAA 60.091 50.000 0.00 0.00 0.00 4.12
1975 2296 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
1976 2297 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
1977 2298 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1978 2299 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1979 2300 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1980 2301 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1981 2302 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1982 2303 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1983 2304 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1984 2305 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1985 2306 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1986 2307 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
1987 2308 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
1988 2309 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
1989 2310 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
1990 2311 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
1991 2312 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
1992 2313 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
1993 2314 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
1994 2315 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
1995 2316 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
1996 2317 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
1997 2318 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
1998 2319 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
1999 2320 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
2000 2321 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
2001 2322 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
2002 2323 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
2003 2324 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
2004 2325 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
2005 2326 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
2006 2327 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
2030 2351 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
2031 2352 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
2032 2353 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
2033 2354 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
2034 2355 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
2035 2356 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
2036 2357 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
2037 2358 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
2038 2359 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
2041 2362 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2042 2363 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2043 2364 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2044 2365 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2045 2366 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2046 2367 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2047 2368 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2048 2369 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2049 2370 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2050 2371 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2051 2372 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2052 2373 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2053 2374 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2061 2382 0.529992 GACGGAGGGAGTATTTGCGG 60.530 60.000 0.00 0.00 0.00 5.69
2073 2394 1.160989 ATTTGCGGTCACAATGCGTA 58.839 45.000 0.00 0.00 0.00 4.42
2074 2395 1.160989 TTTGCGGTCACAATGCGTAT 58.839 45.000 0.00 0.00 0.00 3.06
2082 2403 4.377533 CGGTCACAATGCGTATGTAAAACA 60.378 41.667 0.00 0.00 0.00 2.83
2092 2413 4.092968 GCGTATGTAAAACAAGAGGTGGAG 59.907 45.833 0.00 0.00 0.00 3.86
2115 2436 4.116747 TGACTTGCGTTCCATTGTTTTT 57.883 36.364 0.00 0.00 0.00 1.94
2161 2482 2.125512 GCTGGTGTAGAGGGTGCG 60.126 66.667 0.00 0.00 0.00 5.34
2231 2552 3.067461 TGGTATGCCACAAAACACACTTC 59.933 43.478 0.00 0.00 40.46 3.01
2237 2558 5.971763 TGCCACAAAACACACTTCTTTAAT 58.028 33.333 0.00 0.00 0.00 1.40
2238 2559 6.402222 TGCCACAAAACACACTTCTTTAATT 58.598 32.000 0.00 0.00 0.00 1.40
2239 2560 7.548097 TGCCACAAAACACACTTCTTTAATTA 58.452 30.769 0.00 0.00 0.00 1.40
2240 2561 8.035394 TGCCACAAAACACACTTCTTTAATTAA 58.965 29.630 0.00 0.00 0.00 1.40
2268 2608 6.183360 CCTCGATTTGGCACTAACAACAATAT 60.183 38.462 0.00 0.00 0.00 1.28
2317 2657 4.754667 GGTCGTCGAAGCACCCCC 62.755 72.222 0.00 0.00 0.00 5.40
2318 2658 3.692406 GTCGTCGAAGCACCCCCT 61.692 66.667 0.00 0.00 0.00 4.79
2319 2659 2.920912 TCGTCGAAGCACCCCCTT 60.921 61.111 0.00 0.00 0.00 3.95
2409 2749 2.108952 ACCTTTCTCTTCCCTGCACAAT 59.891 45.455 0.00 0.00 0.00 2.71
2416 2762 4.100653 TCTCTTCCCTGCACAATAGATCTG 59.899 45.833 5.18 0.00 0.00 2.90
2417 2763 4.033009 TCTTCCCTGCACAATAGATCTGA 58.967 43.478 5.18 0.00 0.00 3.27
2418 2764 4.100653 TCTTCCCTGCACAATAGATCTGAG 59.899 45.833 5.18 0.00 0.00 3.35
2490 2836 7.343316 ACTTCTGGATTTAGTATGTGCTACTCT 59.657 37.037 0.00 0.00 41.10 3.24
2502 2848 5.781210 TGTGCTACTCTCTCTAATCCATG 57.219 43.478 0.00 0.00 0.00 3.66
2583 2933 0.962489 AAGACTAGGCATAGCGCGAT 59.038 50.000 12.10 5.99 43.84 4.58
2649 2999 8.276477 GCTACTATCTCTATAGTGGGGAGTAAT 58.724 40.741 8.04 0.00 46.28 1.89
2765 3116 6.808321 AGTAAATTACTCAGACTATGGGCA 57.192 37.500 0.00 0.00 32.47 5.36
2766 3117 6.583562 AGTAAATTACTCAGACTATGGGCAC 58.416 40.000 0.00 0.00 32.47 5.01
2792 3168 3.495001 GGCAGTCTAACAAACTGAGTCAC 59.505 47.826 7.42 0.00 45.64 3.67
2821 3198 6.043358 CCCCTACCCTAGAAAATTCCTTAGAG 59.957 46.154 0.00 0.00 0.00 2.43
2898 3279 5.610398 CAATTAAGTTGTCTTTTTGGCCCT 58.390 37.500 0.00 0.00 35.36 5.19
2910 3310 2.978156 TTGGCCCTTCAACAATCTCT 57.022 45.000 0.00 0.00 0.00 3.10
2924 3324 0.908198 ATCTCTGTCAAGCTCCACCC 59.092 55.000 0.00 0.00 0.00 4.61
2928 3328 3.319198 GTCAAGCTCCACCCCCGA 61.319 66.667 0.00 0.00 0.00 5.14
2950 3350 9.383519 CCCGAGTATAGCATATGAAAATGTATT 57.616 33.333 6.97 0.00 0.00 1.89
3105 3515 5.116180 GGCCAAACAATAGGGAATTTTAGC 58.884 41.667 0.00 0.00 0.00 3.09
3139 3549 6.870439 AGCTTGAACTTCATTTAATTTGGAGC 59.130 34.615 0.00 0.00 0.00 4.70
3186 3596 9.452287 GTGGTAAACCCTTACAGTATGATTTAA 57.548 33.333 0.00 0.00 39.43 1.52
3187 3597 9.675464 TGGTAAACCCTTACAGTATGATTTAAG 57.325 33.333 0.00 0.00 39.43 1.85
3188 3598 9.676861 GGTAAACCCTTACAGTATGATTTAAGT 57.323 33.333 0.00 0.00 39.69 2.24
3193 3603 9.582648 ACCCTTACAGTATGATTTAAGTTTTGT 57.417 29.630 0.00 0.00 39.69 2.83
3194 3604 9.840427 CCCTTACAGTATGATTTAAGTTTTGTG 57.160 33.333 0.00 0.00 39.69 3.33
3195 3605 9.840427 CCTTACAGTATGATTTAAGTTTTGTGG 57.160 33.333 0.00 0.00 39.69 4.17
3200 3610 9.787532 CAGTATGATTTAAGTTTTGTGGTATGG 57.212 33.333 0.00 0.00 39.69 2.74
3201 3611 9.528489 AGTATGATTTAAGTTTTGTGGTATGGT 57.472 29.630 0.00 0.00 0.00 3.55
3254 3692 7.147915 GCTTTGGGAAAACTGGTATTGATGATA 60.148 37.037 0.00 0.00 0.00 2.15
3255 3693 7.880160 TTGGGAAAACTGGTATTGATGATAG 57.120 36.000 0.00 0.00 0.00 2.08
3297 3747 2.567169 CAAAAATGGGAAGGGGTTCCTC 59.433 50.000 4.23 0.00 44.07 3.71
3299 3749 0.845102 AATGGGAAGGGGTTCCTCGT 60.845 55.000 4.23 0.00 44.07 4.18
3449 3900 0.698238 TTGGGCCACTCAGCTAACAT 59.302 50.000 5.23 0.00 0.00 2.71
3516 3967 7.338800 AGCAAACCAAACTAATGATATCAGG 57.661 36.000 11.78 7.40 0.00 3.86
3521 3972 7.961326 ACCAAACTAATGATATCAGGCTTTT 57.039 32.000 11.78 2.80 0.00 2.27
3626 4081 9.635404 TTAATTCCTCCAAGAGTTACAGAAAAA 57.365 29.630 0.00 0.00 0.00 1.94
3627 4082 8.712228 AATTCCTCCAAGAGTTACAGAAAAAT 57.288 30.769 0.00 0.00 0.00 1.82
3628 4083 7.510549 TTCCTCCAAGAGTTACAGAAAAATG 57.489 36.000 0.00 0.00 0.00 2.32
3629 4084 6.601332 TCCTCCAAGAGTTACAGAAAAATGT 58.399 36.000 0.00 0.00 37.19 2.71
3731 4199 3.045688 GTTAAGTTGCAACTTCAGCAGC 58.954 45.455 40.27 24.51 45.65 5.25
3800 6405 0.319297 AAACCGCCACTGTCTACGTC 60.319 55.000 0.00 0.00 0.00 4.34
3821 6429 0.881796 TCTCAGCGTCTGACGACAAT 59.118 50.000 32.07 12.37 46.05 2.71
4718 7341 2.357034 CCGAGGAACCACACCGTG 60.357 66.667 0.00 0.00 0.00 4.94
4724 7347 1.639534 GAACCACACCGTGTTCACG 59.360 57.895 16.87 16.87 0.00 4.35
4858 7481 1.209128 CGCTCCGTTACCATCACATC 58.791 55.000 0.00 0.00 0.00 3.06
4963 7607 4.751431 GCTCTGGCCCTCACAAAT 57.249 55.556 0.00 0.00 0.00 2.32
4964 7608 2.187073 GCTCTGGCCCTCACAAATG 58.813 57.895 0.00 0.00 0.00 2.32
4965 7609 1.941999 GCTCTGGCCCTCACAAATGC 61.942 60.000 0.00 0.00 0.00 3.56
4966 7610 0.609957 CTCTGGCCCTCACAAATGCA 60.610 55.000 0.00 0.00 0.00 3.96
4967 7611 0.040058 TCTGGCCCTCACAAATGCAT 59.960 50.000 0.00 0.00 0.00 3.96
4968 7612 0.899720 CTGGCCCTCACAAATGCATT 59.100 50.000 5.99 5.99 0.00 3.56
4969 7613 0.896923 TGGCCCTCACAAATGCATTC 59.103 50.000 13.38 0.00 0.00 2.67
4970 7614 0.896923 GGCCCTCACAAATGCATTCA 59.103 50.000 13.38 0.00 0.00 2.57
4971 7615 1.483415 GGCCCTCACAAATGCATTCAT 59.517 47.619 13.38 0.51 33.53 2.57
4972 7616 2.093341 GGCCCTCACAAATGCATTCATT 60.093 45.455 13.38 0.00 44.32 2.57
4973 7617 2.933906 GCCCTCACAAATGCATTCATTG 59.066 45.455 13.38 10.18 41.77 2.82
4974 7618 3.618019 GCCCTCACAAATGCATTCATTGT 60.618 43.478 13.38 10.87 41.77 2.71
4975 7619 4.381825 GCCCTCACAAATGCATTCATTGTA 60.382 41.667 13.38 2.86 41.77 2.41
4976 7620 5.104374 CCCTCACAAATGCATTCATTGTAC 58.896 41.667 13.38 0.00 41.77 2.90
4977 7621 5.336610 CCCTCACAAATGCATTCATTGTACA 60.337 40.000 13.38 3.36 41.77 2.90
4979 7623 6.474427 CCTCACAAATGCATTCATTGTACATC 59.526 38.462 13.38 0.00 41.77 3.06
4980 7624 6.028987 TCACAAATGCATTCATTGTACATCG 58.971 36.000 13.38 2.01 41.77 3.84
4981 7625 5.801444 CACAAATGCATTCATTGTACATCGT 59.199 36.000 13.38 0.00 41.77 3.73
4983 7627 5.816449 AATGCATTCATTGTACATCGTGA 57.184 34.783 5.99 0.00 41.12 4.35
4985 7629 5.159399 TGCATTCATTGTACATCGTGATG 57.841 39.130 8.27 8.27 44.15 3.07
4987 7631 8.151658 AATGCATTCATTGTACATCGTGATGTG 61.152 37.037 22.39 8.10 44.54 3.21
5001 9441 0.669077 GATGTGAGTACGCCGGAGAT 59.331 55.000 13.83 0.00 0.00 2.75
5002 9442 0.385751 ATGTGAGTACGCCGGAGATG 59.614 55.000 13.83 0.00 0.00 2.90
5067 9507 2.187946 CCTCTCCATCCACACGCC 59.812 66.667 0.00 0.00 0.00 5.68
5069 9509 4.451150 TCTCCATCCACACGCCGC 62.451 66.667 0.00 0.00 0.00 6.53
5187 9629 4.778534 TTGTTTCTACTACCTCCGTCTG 57.221 45.455 0.00 0.00 0.00 3.51
5188 9630 3.759581 TGTTTCTACTACCTCCGTCTGT 58.240 45.455 0.00 0.00 0.00 3.41
5189 9631 3.755378 TGTTTCTACTACCTCCGTCTGTC 59.245 47.826 0.00 0.00 0.00 3.51
5190 9632 3.996921 TTCTACTACCTCCGTCTGTCT 57.003 47.619 0.00 0.00 0.00 3.41
5228 9673 7.807433 TCGTAGAAATGAAAACAAATGGATGTG 59.193 33.333 0.00 0.00 32.81 3.21
5236 9681 8.408043 TGAAAACAAATGGATGTGTCTAGAAT 57.592 30.769 0.00 0.00 32.81 2.40
5267 9719 6.636454 AGGTTTAGATACACCATTTCTCCA 57.364 37.500 0.00 0.00 35.25 3.86
5271 9723 4.553330 AGATACACCATTTCTCCAACGT 57.447 40.909 0.00 0.00 0.00 3.99
5291 9743 1.829222 TGTAAATCTGGACGGAGGGAC 59.171 52.381 0.00 0.00 0.00 4.46
5350 13906 7.476540 TTATTAGCTGTGAGAGGTTTGTCTA 57.523 36.000 0.00 0.00 33.31 2.59
5351 13907 5.801531 TTAGCTGTGAGAGGTTTGTCTAA 57.198 39.130 0.00 0.00 33.31 2.10
5447 14003 2.551459 GTGAGGTGATGGCTATTCATGC 59.449 50.000 0.00 0.00 0.00 4.06
5462 14018 6.203530 GCTATTCATGCAGTTACAATAGCAGA 59.796 38.462 20.03 3.98 45.96 4.26
5522 14078 1.500474 TGAGTTATGGCTCTCCCTGG 58.500 55.000 0.00 0.00 36.51 4.45
5527 14083 1.635817 TATGGCTCTCCCTGGTTGGC 61.636 60.000 0.00 0.00 0.00 4.52
5557 14113 2.285834 GCTTTGACCGAATACTGCATCG 60.286 50.000 0.42 0.42 38.74 3.84
5602 14158 0.543749 ACTCCTTCTGCTATGGCCAC 59.456 55.000 8.16 0.00 37.74 5.01
5748 14304 8.324306 ACATATATATATGCTTCAACTGCCAGT 58.676 33.333 26.04 0.00 42.98 4.00
5798 14354 2.802816 GTGCAATTAGACCGGCTGATAG 59.197 50.000 0.00 0.00 0.00 2.08
5803 14359 2.750141 TAGACCGGCTGATAGGAAGT 57.250 50.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.359181 GCGATTTCAACTTTATTGGAGGTTTTG 60.359 37.037 0.00 0.00 0.00 2.44
6 7 5.309323 TGCGATTTCAACTTTATTGGAGG 57.691 39.130 0.00 0.00 0.00 4.30
7 8 5.287035 GCTTGCGATTTCAACTTTATTGGAG 59.713 40.000 0.00 0.00 0.00 3.86
8 9 5.160641 GCTTGCGATTTCAACTTTATTGGA 58.839 37.500 0.00 0.00 0.00 3.53
15 16 2.545742 GGTTGGCTTGCGATTTCAACTT 60.546 45.455 11.47 0.00 38.13 2.66
26 27 0.667184 CGAATGGTTGGTTGGCTTGC 60.667 55.000 0.00 0.00 0.00 4.01
27 28 0.673437 ACGAATGGTTGGTTGGCTTG 59.327 50.000 0.00 0.00 0.00 4.01
28 29 0.958822 GACGAATGGTTGGTTGGCTT 59.041 50.000 0.00 0.00 0.00 4.35
71 73 8.970293 AGTAAAATTTTATTTGTTTCCGTTCCG 58.030 29.630 13.54 0.00 0.00 4.30
151 156 9.522804 GCTTCTTCCATATAAATATCGGAGTAG 57.477 37.037 0.00 0.00 0.00 2.57
155 160 6.931838 ACGCTTCTTCCATATAAATATCGGA 58.068 36.000 0.00 0.00 0.00 4.55
156 161 7.413000 CCAACGCTTCTTCCATATAAATATCGG 60.413 40.741 0.00 0.00 0.00 4.18
157 162 7.117812 ACCAACGCTTCTTCCATATAAATATCG 59.882 37.037 0.00 0.00 0.00 2.92
158 163 8.324163 ACCAACGCTTCTTCCATATAAATATC 57.676 34.615 0.00 0.00 0.00 1.63
159 164 8.691661 AACCAACGCTTCTTCCATATAAATAT 57.308 30.769 0.00 0.00 0.00 1.28
160 165 9.787435 ATAACCAACGCTTCTTCCATATAAATA 57.213 29.630 0.00 0.00 0.00 1.40
161 166 8.691661 ATAACCAACGCTTCTTCCATATAAAT 57.308 30.769 0.00 0.00 0.00 1.40
162 167 9.616156 TTATAACCAACGCTTCTTCCATATAAA 57.384 29.630 0.00 0.00 0.00 1.40
163 168 9.048446 GTTATAACCAACGCTTCTTCCATATAA 57.952 33.333 4.11 0.00 0.00 0.98
164 169 8.205512 TGTTATAACCAACGCTTCTTCCATATA 58.794 33.333 13.01 0.00 0.00 0.86
165 170 7.051623 TGTTATAACCAACGCTTCTTCCATAT 58.948 34.615 13.01 0.00 0.00 1.78
166 171 6.408035 TGTTATAACCAACGCTTCTTCCATA 58.592 36.000 13.01 0.00 0.00 2.74
167 172 5.250200 TGTTATAACCAACGCTTCTTCCAT 58.750 37.500 13.01 0.00 0.00 3.41
168 173 4.643463 TGTTATAACCAACGCTTCTTCCA 58.357 39.130 13.01 0.00 0.00 3.53
169 174 5.180680 ACTTGTTATAACCAACGCTTCTTCC 59.819 40.000 13.01 0.00 0.00 3.46
170 175 6.073440 TCACTTGTTATAACCAACGCTTCTTC 60.073 38.462 13.01 0.00 0.00 2.87
171 176 5.761234 TCACTTGTTATAACCAACGCTTCTT 59.239 36.000 13.01 0.00 0.00 2.52
172 177 5.302360 TCACTTGTTATAACCAACGCTTCT 58.698 37.500 13.01 0.00 0.00 2.85
173 178 5.600908 TCACTTGTTATAACCAACGCTTC 57.399 39.130 13.01 0.00 0.00 3.86
174 179 6.569179 ATTCACTTGTTATAACCAACGCTT 57.431 33.333 13.01 0.00 0.00 4.68
175 180 7.859325 ATATTCACTTGTTATAACCAACGCT 57.141 32.000 13.01 0.00 0.00 5.07
176 181 7.044314 GCAATATTCACTTGTTATAACCAACGC 60.044 37.037 13.01 0.00 0.00 4.84
177 182 7.965655 TGCAATATTCACTTGTTATAACCAACG 59.034 33.333 13.01 1.81 0.00 4.10
178 183 9.289303 CTGCAATATTCACTTGTTATAACCAAC 57.711 33.333 13.01 0.00 0.00 3.77
179 184 7.973388 GCTGCAATATTCACTTGTTATAACCAA 59.027 33.333 13.01 6.71 0.00 3.67
180 185 7.121907 TGCTGCAATATTCACTTGTTATAACCA 59.878 33.333 13.01 1.05 0.00 3.67
181 186 7.432252 GTGCTGCAATATTCACTTGTTATAACC 59.568 37.037 13.01 0.00 0.00 2.85
182 187 7.164171 CGTGCTGCAATATTCACTTGTTATAAC 59.836 37.037 2.77 8.75 0.00 1.89
202 207 3.857854 GATCGTGCTGGCGTGCTG 61.858 66.667 4.08 0.00 0.00 4.41
203 208 4.074526 AGATCGTGCTGGCGTGCT 62.075 61.111 4.08 0.00 0.00 4.40
204 209 3.857854 CAGATCGTGCTGGCGTGC 61.858 66.667 0.00 0.00 32.26 5.34
214 219 1.252175 CATCTCCGGATCCAGATCGT 58.748 55.000 13.41 0.00 38.69 3.73
220 225 1.383109 AGCACCATCTCCGGATCCA 60.383 57.895 13.41 0.00 0.00 3.41
607 612 4.183865 CACCTTCTCAGCGTTGATATCAA 58.816 43.478 14.23 14.23 31.68 2.57
608 613 3.195610 ACACCTTCTCAGCGTTGATATCA 59.804 43.478 1.26 0.00 31.68 2.15
609 614 3.553511 CACACCTTCTCAGCGTTGATATC 59.446 47.826 1.26 0.00 31.68 1.63
610 615 3.055819 ACACACCTTCTCAGCGTTGATAT 60.056 43.478 1.26 0.00 31.68 1.63
611 616 2.299013 ACACACCTTCTCAGCGTTGATA 59.701 45.455 1.26 0.00 31.68 2.15
612 617 1.070758 ACACACCTTCTCAGCGTTGAT 59.929 47.619 1.26 0.00 31.68 2.57
613 618 0.464036 ACACACCTTCTCAGCGTTGA 59.536 50.000 0.88 0.88 0.00 3.18
614 619 0.583438 CACACACCTTCTCAGCGTTG 59.417 55.000 0.00 0.00 0.00 4.10
615 620 0.464036 TCACACACCTTCTCAGCGTT 59.536 50.000 0.00 0.00 0.00 4.84
633 638 2.279120 CGTGCATCGGCTCCTCTC 60.279 66.667 0.00 0.00 41.91 3.20
634 639 4.521062 GCGTGCATCGGCTCCTCT 62.521 66.667 10.02 0.00 41.91 3.69
696 749 1.625818 ACATCGAACAGAGAGCCCTTT 59.374 47.619 0.00 0.00 0.00 3.11
768 827 1.610886 GGTTGACCTTCCAGCAGTACC 60.611 57.143 0.00 0.00 0.00 3.34
796 855 4.578601 CGCGAGCTTAGTTTAATCCAAAG 58.421 43.478 0.00 0.00 0.00 2.77
850 1038 4.523173 TCCTACTTATGGGTATCTCTTGCG 59.477 45.833 0.00 0.00 0.00 4.85
885 1081 7.496263 CACTGATCTTCACTGCTAGTAGTAGTA 59.504 40.741 19.04 5.91 39.17 1.82
886 1082 6.317642 CACTGATCTTCACTGCTAGTAGTAGT 59.682 42.308 13.52 14.50 41.96 2.73
888 1084 5.066634 GCACTGATCTTCACTGCTAGTAGTA 59.933 44.000 13.52 0.00 34.68 1.82
889 1085 4.142271 GCACTGATCTTCACTGCTAGTAGT 60.142 45.833 7.78 7.78 34.68 2.73
890 1086 4.358851 GCACTGATCTTCACTGCTAGTAG 58.641 47.826 6.26 6.26 34.68 2.57
891 1087 3.131223 GGCACTGATCTTCACTGCTAGTA 59.869 47.826 8.38 0.00 36.74 1.82
892 1088 2.093764 GGCACTGATCTTCACTGCTAGT 60.094 50.000 8.38 0.00 36.74 2.57
893 1089 2.548875 GGCACTGATCTTCACTGCTAG 58.451 52.381 8.38 0.00 36.74 3.42
894 1090 1.208052 GGGCACTGATCTTCACTGCTA 59.792 52.381 8.38 0.00 36.74 3.49
895 1091 0.035630 GGGCACTGATCTTCACTGCT 60.036 55.000 8.38 0.00 36.74 4.24
896 1092 0.321919 TGGGCACTGATCTTCACTGC 60.322 55.000 0.00 1.87 36.09 4.40
897 1093 1.446907 GTGGGCACTGATCTTCACTG 58.553 55.000 0.00 0.00 0.00 3.66
898 1094 0.326264 GGTGGGCACTGATCTTCACT 59.674 55.000 0.00 0.00 0.00 3.41
899 1095 0.036732 TGGTGGGCACTGATCTTCAC 59.963 55.000 0.00 0.00 0.00 3.18
900 1096 0.994247 ATGGTGGGCACTGATCTTCA 59.006 50.000 0.00 0.00 0.00 3.02
912 1108 2.301346 GCTCCAGTGAATAATGGTGGG 58.699 52.381 0.00 0.00 42.55 4.61
933 1129 3.423539 TGATCACTTGGTAGCTTGCTT 57.576 42.857 0.00 0.00 0.00 3.91
937 1133 2.040278 TGGCTTGATCACTTGGTAGCTT 59.960 45.455 13.10 0.00 0.00 3.74
944 1140 3.340814 ACCTACTGGCTTGATCACTTG 57.659 47.619 0.00 0.00 36.63 3.16
976 1172 3.540014 CGCTCGCTCGCTCTTGTG 61.540 66.667 0.00 0.00 0.00 3.33
984 1180 4.306471 ATCTCGCTCGCTCGCTCG 62.306 66.667 0.00 0.00 0.00 5.03
985 1181 2.654421 TTCATCTCGCTCGCTCGCTC 62.654 60.000 0.00 0.00 0.00 5.03
986 1182 2.271607 TTTCATCTCGCTCGCTCGCT 62.272 55.000 0.00 0.00 0.00 4.93
987 1183 1.413767 TTTTCATCTCGCTCGCTCGC 61.414 55.000 0.00 0.00 0.00 5.03
988 1184 0.569810 CTTTTCATCTCGCTCGCTCG 59.430 55.000 0.00 0.00 0.00 5.03
989 1185 0.926846 CCTTTTCATCTCGCTCGCTC 59.073 55.000 0.00 0.00 0.00 5.03
990 1186 0.460987 CCCTTTTCATCTCGCTCGCT 60.461 55.000 0.00 0.00 0.00 4.93
991 1187 1.432270 CCCCTTTTCATCTCGCTCGC 61.432 60.000 0.00 0.00 0.00 5.03
992 1188 1.432270 GCCCCTTTTCATCTCGCTCG 61.432 60.000 0.00 0.00 0.00 5.03
993 1189 1.432270 CGCCCCTTTTCATCTCGCTC 61.432 60.000 0.00 0.00 0.00 5.03
994 1190 1.450312 CGCCCCTTTTCATCTCGCT 60.450 57.895 0.00 0.00 0.00 4.93
995 1191 2.472909 CCGCCCCTTTTCATCTCGC 61.473 63.158 0.00 0.00 0.00 5.03
996 1192 1.819632 CCCGCCCCTTTTCATCTCG 60.820 63.158 0.00 0.00 0.00 4.04
1074 1286 1.671901 GGACGAGGAGAGGAAGCAGG 61.672 65.000 0.00 0.00 0.00 4.85
1087 1299 3.878519 GAGGACGGCGAGGACGAG 61.879 72.222 16.62 0.00 42.66 4.18
1101 1313 1.363744 GCATGAAGTCGGACTTGAGG 58.636 55.000 26.87 21.10 38.80 3.86
1161 1373 3.103911 GTTGGCGAGTCGTCGGTG 61.104 66.667 13.20 0.00 46.91 4.94
1162 1374 3.141522 TTGTTGGCGAGTCGTCGGT 62.142 57.895 13.20 0.00 46.91 4.69
1165 1377 1.214367 TTTCTTGTTGGCGAGTCGTC 58.786 50.000 10.93 10.93 0.00 4.20
1168 1380 3.375299 AGCATATTTCTTGTTGGCGAGTC 59.625 43.478 0.00 0.00 0.00 3.36
1185 1401 5.106357 TGCGACAAAATTAAGCTCAAGCATA 60.106 36.000 4.59 0.00 45.16 3.14
1191 1407 4.668941 CGTGATGCGACAAAATTAAGCTCA 60.669 41.667 0.00 0.00 44.77 4.26
1253 1469 6.990939 CGATCTATGGACCGGATTCTACTATA 59.009 42.308 9.46 0.00 0.00 1.31
1260 1476 3.662247 AACGATCTATGGACCGGATTC 57.338 47.619 9.46 0.00 0.00 2.52
1263 1479 3.899052 AAAAACGATCTATGGACCGGA 57.101 42.857 9.46 0.00 0.00 5.14
1273 1489 8.778358 GCATTATCTTCTCCATAAAAACGATCT 58.222 33.333 0.00 0.00 0.00 2.75
1274 1490 8.778358 AGCATTATCTTCTCCATAAAAACGATC 58.222 33.333 0.00 0.00 0.00 3.69
1297 1513 1.833630 AGGGATCGATCTTGTCAAGCA 59.166 47.619 23.96 0.00 0.00 3.91
1299 1515 3.452474 GTGAGGGATCGATCTTGTCAAG 58.548 50.000 23.96 6.21 0.00 3.02
1304 1520 3.550437 AAAGGTGAGGGATCGATCTTG 57.450 47.619 23.96 0.00 0.00 3.02
1305 1521 4.547671 TCTAAAGGTGAGGGATCGATCTT 58.452 43.478 23.96 13.25 0.00 2.40
1324 1599 2.361119 CCGGGTCGATCTTGTCAATCTA 59.639 50.000 0.00 0.00 0.00 1.98
1345 1626 1.530323 ACACTAAATGTTGACCCGGC 58.470 50.000 0.00 0.00 38.98 6.13
1384 1665 9.210426 CTAACATAAAAACCGATTGATTTCTCG 57.790 33.333 0.00 0.00 34.73 4.04
1403 1684 6.140786 CGCGCTCAAGAATACTACTAACATA 58.859 40.000 5.56 0.00 0.00 2.29
1408 1689 5.936686 ATACGCGCTCAAGAATACTACTA 57.063 39.130 5.73 0.00 0.00 1.82
1427 1708 4.511454 TCGCAATAGATGAACCAGCAATAC 59.489 41.667 0.00 0.00 0.00 1.89
1444 1730 0.599204 ACAAACTCGACGGTCGCAAT 60.599 50.000 24.76 10.09 40.21 3.56
1485 1771 0.539438 AAATTTCAGGCACCTGGCGA 60.539 50.000 16.52 3.76 46.16 5.54
1488 1774 3.473923 ACAAAAATTTCAGGCACCTGG 57.526 42.857 16.52 0.00 43.75 4.45
1517 1803 5.411361 TCGGTCTTGTTTGAATTCGATTGAT 59.589 36.000 0.04 0.00 0.00 2.57
1549 1835 2.357034 TGCGCCTCTCACGTTTCC 60.357 61.111 4.18 0.00 0.00 3.13
1642 1928 1.467920 CTTCCTTAGCTTTGCCTGGG 58.532 55.000 0.00 0.00 0.00 4.45
1668 1954 2.126307 CCCAGACTCGCACTCGTG 60.126 66.667 0.00 0.00 36.96 4.35
1672 1958 2.936912 GCACTCCCAGACTCGCACT 61.937 63.158 0.00 0.00 0.00 4.40
1677 1963 2.680352 TCCCGCACTCCCAGACTC 60.680 66.667 0.00 0.00 0.00 3.36
1694 1981 2.280592 GAACCAACACCGACGGCT 60.281 61.111 15.39 0.00 0.00 5.52
1696 1983 2.018542 ATATGAACCAACACCGACGG 57.981 50.000 13.61 13.61 0.00 4.79
1708 1996 3.817647 CTCTAAGCCCTGCCAATATGAAC 59.182 47.826 0.00 0.00 0.00 3.18
1710 1998 2.373169 CCTCTAAGCCCTGCCAATATGA 59.627 50.000 0.00 0.00 0.00 2.15
1740 2028 1.355005 TGATGTACATGTTGTCGCCG 58.645 50.000 14.43 0.00 0.00 6.46
1767 2055 3.403558 GTGTGCCTCTCCTCCCCC 61.404 72.222 0.00 0.00 0.00 5.40
1772 2093 2.362369 CCATCCGTGTGCCTCTCCT 61.362 63.158 0.00 0.00 0.00 3.69
1774 2095 1.690219 ATCCCATCCGTGTGCCTCTC 61.690 60.000 0.00 0.00 0.00 3.20
1775 2096 1.690633 ATCCCATCCGTGTGCCTCT 60.691 57.895 0.00 0.00 0.00 3.69
1782 2103 1.227764 CTGCTCCATCCCATCCGTG 60.228 63.158 0.00 0.00 0.00 4.94
1793 2114 3.714001 CCTGCCTGCTCTGCTCCA 61.714 66.667 0.00 0.00 0.00 3.86
1801 2122 2.596631 CACAACTGCCTGCCTGCT 60.597 61.111 0.00 0.00 0.00 4.24
1802 2123 4.353437 GCACAACTGCCTGCCTGC 62.353 66.667 0.00 0.00 37.45 4.85
1803 2124 4.034258 CGCACAACTGCCTGCCTG 62.034 66.667 0.00 0.00 40.73 4.85
1817 2138 1.204786 TCTTTCTTCCCCATCCCGCA 61.205 55.000 0.00 0.00 0.00 5.69
1818 2139 0.464554 CTCTTTCTTCCCCATCCCGC 60.465 60.000 0.00 0.00 0.00 6.13
1824 2145 2.701551 TGAACCTCTCTTTCTTCCCCA 58.298 47.619 0.00 0.00 0.00 4.96
1827 2148 5.799213 TCATCTTGAACCTCTCTTTCTTCC 58.201 41.667 0.00 0.00 0.00 3.46
1861 2182 1.586422 CATCCAACGGCCAGTATCAG 58.414 55.000 2.24 0.00 0.00 2.90
1862 2183 0.180171 CCATCCAACGGCCAGTATCA 59.820 55.000 2.24 0.00 0.00 2.15
1882 2203 1.663695 ATTGTTAGGCGGTTGGATCG 58.336 50.000 0.00 0.00 0.00 3.69
1944 2265 4.162509 GGAGGGAGTATATGTTATGGGAGC 59.837 50.000 0.00 0.00 0.00 4.70
1953 2274 1.502039 TGGGACGGAGGGAGTATATGT 59.498 52.381 0.00 0.00 0.00 2.29
1959 2280 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1960 2281 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1961 2282 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1962 2283 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1963 2284 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1964 2285 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
1965 2286 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
1966 2287 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
1967 2288 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
1968 2289 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
1969 2290 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
1970 2291 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
1971 2292 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
1972 2293 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
1973 2294 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
1974 2295 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
1975 2296 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
1976 2297 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
1977 2298 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
1978 2299 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
1979 2300 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
1980 2301 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
1981 2302 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
2005 2326 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
2007 2328 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
2008 2329 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
2009 2330 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
2010 2331 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
2011 2332 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
2012 2333 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
2015 2336 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2016 2337 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2017 2338 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2018 2339 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2019 2340 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2020 2341 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2021 2342 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2022 2343 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2023 2344 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2024 2345 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2025 2346 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2026 2347 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2027 2348 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2028 2349 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2029 2350 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2030 2351 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2031 2352 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2032 2353 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2033 2354 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2034 2355 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2035 2356 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2036 2357 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2037 2358 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2038 2359 1.557832 CAAATACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
2039 2360 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
2040 2361 0.179054 GCAAATACTCCCTCCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
2041 2362 0.529992 CGCAAATACTCCCTCCGTCC 60.530 60.000 0.00 0.00 0.00 4.79
2042 2363 0.529992 CCGCAAATACTCCCTCCGTC 60.530 60.000 0.00 0.00 0.00 4.79
2043 2364 1.262640 ACCGCAAATACTCCCTCCGT 61.263 55.000 0.00 0.00 0.00 4.69
2044 2365 0.529992 GACCGCAAATACTCCCTCCG 60.530 60.000 0.00 0.00 0.00 4.63
2045 2366 0.539986 TGACCGCAAATACTCCCTCC 59.460 55.000 0.00 0.00 0.00 4.30
2046 2367 1.066430 TGTGACCGCAAATACTCCCTC 60.066 52.381 0.00 0.00 0.00 4.30
2047 2368 0.981183 TGTGACCGCAAATACTCCCT 59.019 50.000 0.00 0.00 0.00 4.20
2048 2369 1.816074 TTGTGACCGCAAATACTCCC 58.184 50.000 0.00 0.00 0.00 4.30
2049 2370 2.477863 GCATTGTGACCGCAAATACTCC 60.478 50.000 0.00 0.00 31.63 3.85
2050 2371 2.785679 GCATTGTGACCGCAAATACTC 58.214 47.619 0.00 0.00 31.63 2.59
2051 2372 1.130373 CGCATTGTGACCGCAAATACT 59.870 47.619 0.00 0.00 31.63 2.12
2052 2373 1.135803 ACGCATTGTGACCGCAAATAC 60.136 47.619 3.82 0.00 31.63 1.89
2053 2374 1.160989 ACGCATTGTGACCGCAAATA 58.839 45.000 3.82 0.00 31.63 1.40
2061 2382 6.367421 TCTTGTTTTACATACGCATTGTGAC 58.633 36.000 3.82 0.00 0.00 3.67
2073 2394 5.940470 GTCATCTCCACCTCTTGTTTTACAT 59.060 40.000 0.00 0.00 0.00 2.29
2074 2395 5.071788 AGTCATCTCCACCTCTTGTTTTACA 59.928 40.000 0.00 0.00 0.00 2.41
2082 2403 1.066573 CGCAAGTCATCTCCACCTCTT 60.067 52.381 0.00 0.00 0.00 2.85
2231 2552 8.190784 AGTGCCAAATCGAGGATTTAATTAAAG 58.809 33.333 15.45 2.88 39.82 1.85
2237 2558 5.941058 TGTTAGTGCCAAATCGAGGATTTAA 59.059 36.000 3.49 0.00 39.82 1.52
2238 2559 5.492895 TGTTAGTGCCAAATCGAGGATTTA 58.507 37.500 3.49 0.00 39.82 1.40
2239 2560 4.331968 TGTTAGTGCCAAATCGAGGATTT 58.668 39.130 0.00 0.00 42.14 2.17
2240 2561 3.950397 TGTTAGTGCCAAATCGAGGATT 58.050 40.909 0.00 0.00 33.25 3.01
2246 2567 9.515020 AATAATATTGTTGTTAGTGCCAAATCG 57.485 29.630 0.00 0.00 0.00 3.34
2268 2608 2.026729 TCATCGACCACAGGGCAAATAA 60.027 45.455 0.00 0.00 37.90 1.40
2400 2740 3.387374 AGTCCTCAGATCTATTGTGCAGG 59.613 47.826 0.00 0.00 0.00 4.85
2409 2749 5.068329 CACTGCACATTAGTCCTCAGATCTA 59.932 44.000 0.00 0.00 0.00 1.98
2416 2762 2.099141 TGCACTGCACATTAGTCCTC 57.901 50.000 0.00 0.00 31.71 3.71
2477 2823 6.885952 TGGATTAGAGAGAGTAGCACATAC 57.114 41.667 0.00 0.00 34.30 2.39
2490 2836 4.321008 GCGACGATTACCATGGATTAGAGA 60.321 45.833 21.47 0.00 0.00 3.10
2502 2848 5.276270 TGTACTAAATCAGCGACGATTACC 58.724 41.667 0.00 0.00 34.49 2.85
2616 2966 7.723616 CCCACTATAGAGATAGTAGCATATGCT 59.276 40.741 31.60 31.60 45.42 3.79
2617 2967 7.040062 CCCCACTATAGAGATAGTAGCATATGC 60.040 44.444 20.36 20.36 45.42 3.14
2618 2968 8.221251 TCCCCACTATAGAGATAGTAGCATATG 58.779 40.741 6.78 0.00 45.42 1.78
2619 2969 8.351493 TCCCCACTATAGAGATAGTAGCATAT 57.649 38.462 6.78 0.00 45.42 1.78
2620 2970 7.406445 ACTCCCCACTATAGAGATAGTAGCATA 59.594 40.741 6.78 0.00 45.42 3.14
2621 2971 6.218730 ACTCCCCACTATAGAGATAGTAGCAT 59.781 42.308 6.78 0.00 45.42 3.79
2622 2972 5.552371 ACTCCCCACTATAGAGATAGTAGCA 59.448 44.000 6.78 0.00 45.42 3.49
2623 2973 6.069705 ACTCCCCACTATAGAGATAGTAGC 57.930 45.833 6.78 0.00 45.42 3.58
2750 3101 1.556911 CCAAGTGCCCATAGTCTGAGT 59.443 52.381 0.00 0.00 0.00 3.41
2751 3102 1.134280 CCCAAGTGCCCATAGTCTGAG 60.134 57.143 0.00 0.00 0.00 3.35
2752 3103 0.911769 CCCAAGTGCCCATAGTCTGA 59.088 55.000 0.00 0.00 0.00 3.27
2753 3104 0.749454 GCCCAAGTGCCCATAGTCTG 60.749 60.000 0.00 0.00 0.00 3.51
2754 3105 1.207488 TGCCCAAGTGCCCATAGTCT 61.207 55.000 0.00 0.00 0.00 3.24
2756 3107 1.304282 CTGCCCAAGTGCCCATAGT 59.696 57.895 0.00 0.00 0.00 2.12
2757 3108 0.749454 GACTGCCCAAGTGCCCATAG 60.749 60.000 0.00 0.00 40.07 2.23
2759 3110 1.207488 TAGACTGCCCAAGTGCCCAT 61.207 55.000 0.00 0.00 40.07 4.00
2760 3111 1.422977 TTAGACTGCCCAAGTGCCCA 61.423 55.000 0.00 0.00 40.07 5.36
2761 3112 0.960861 GTTAGACTGCCCAAGTGCCC 60.961 60.000 0.00 0.00 40.07 5.36
2762 3113 0.250727 TGTTAGACTGCCCAAGTGCC 60.251 55.000 0.00 0.00 40.07 5.01
2763 3114 1.604604 TTGTTAGACTGCCCAAGTGC 58.395 50.000 0.00 0.00 40.07 4.40
2765 3116 3.118038 TCAGTTTGTTAGACTGCCCAAGT 60.118 43.478 0.00 0.00 43.23 3.16
2766 3117 3.476552 TCAGTTTGTTAGACTGCCCAAG 58.523 45.455 0.00 0.00 43.23 3.61
2821 3198 7.683437 AAGCCTAAGTAACAATTCAACCTAC 57.317 36.000 0.00 0.00 0.00 3.18
2898 3279 4.067896 GGAGCTTGACAGAGATTGTTGAA 58.932 43.478 0.00 0.00 41.05 2.69
2910 3310 3.636231 CGGGGGTGGAGCTTGACA 61.636 66.667 0.00 0.00 0.00 3.58
2924 3324 8.948631 ATACATTTTCATATGCTATACTCGGG 57.051 34.615 0.00 0.00 0.00 5.14
3127 3537 4.335416 CACTCCCTCAGCTCCAAATTAAA 58.665 43.478 0.00 0.00 0.00 1.52
3139 3549 1.833630 TGAATGGTAGCACTCCCTCAG 59.166 52.381 0.32 0.00 0.00 3.35
3269 3719 4.544152 ACCCCTTCCCATTTTTGAGATCTA 59.456 41.667 0.00 0.00 0.00 1.98
3299 3749 0.611200 ATCCATTCCCACGTTCGTGA 59.389 50.000 23.84 7.22 38.30 4.35
3424 3875 0.463620 GCTGAGTGGCCCAAACAAAA 59.536 50.000 0.00 0.00 0.00 2.44
3449 3900 6.867816 CCAGCAAATTAAATGTACTCTTTGCA 59.132 34.615 16.77 0.00 46.61 4.08
3508 3959 4.156008 ACAACCAACGAAAAGCCTGATATC 59.844 41.667 0.00 0.00 0.00 1.63
3516 3967 3.685836 ACTGTACAACCAACGAAAAGC 57.314 42.857 0.00 0.00 0.00 3.51
3571 4022 4.520492 CCACTGAATTCTACCATTATGGGC 59.480 45.833 16.35 0.00 43.37 5.36
3731 4199 2.811902 CACACATGTTGGTGCGATAG 57.188 50.000 0.00 0.00 42.55 2.08
3821 6429 2.668632 GTCCCATTGTCTGGCCGA 59.331 61.111 0.00 0.00 44.46 5.54
3941 6555 4.367023 TAGGTCACCGTGCACCGC 62.367 66.667 12.15 0.00 37.79 5.68
4724 7347 2.764128 TGCAGGGAGACGGGATCC 60.764 66.667 1.92 1.92 35.99 3.36
4739 7362 0.961019 TGTTGAATCCCTGCTTGTGC 59.039 50.000 0.00 0.00 40.20 4.57
4874 7497 8.764524 TTTGAAAAGAAAATCAAAAACCTCGA 57.235 26.923 0.00 0.00 41.26 4.04
4959 7603 6.028987 TCACGATGTACAATGAATGCATTTG 58.971 36.000 14.33 10.62 41.87 2.32
4963 7607 5.159399 CATCACGATGTACAATGAATGCA 57.841 39.130 0.00 0.00 34.23 3.96
4976 7620 1.200483 GGCGTACTCACATCACGATG 58.800 55.000 5.48 5.48 44.15 3.84
4977 7621 0.248498 CGGCGTACTCACATCACGAT 60.248 55.000 0.00 0.00 37.89 3.73
4979 7623 1.872234 CCGGCGTACTCACATCACG 60.872 63.158 6.01 0.00 38.66 4.35
4980 7624 0.525668 CTCCGGCGTACTCACATCAC 60.526 60.000 6.01 0.00 0.00 3.06
4981 7625 0.678684 TCTCCGGCGTACTCACATCA 60.679 55.000 6.01 0.00 0.00 3.07
4983 7627 0.385751 CATCTCCGGCGTACTCACAT 59.614 55.000 6.01 0.00 0.00 3.21
4985 7629 0.248539 GTCATCTCCGGCGTACTCAC 60.249 60.000 6.01 0.00 0.00 3.51
4987 7631 0.248539 GTGTCATCTCCGGCGTACTC 60.249 60.000 6.01 0.00 0.00 2.59
4988 7632 0.680280 AGTGTCATCTCCGGCGTACT 60.680 55.000 6.01 0.00 0.00 2.73
4989 7633 0.172803 AAGTGTCATCTCCGGCGTAC 59.827 55.000 6.01 0.00 0.00 3.67
4991 7635 1.215647 GAAGTGTCATCTCCGGCGT 59.784 57.895 6.01 0.00 0.00 5.68
4992 7636 0.803768 CTGAAGTGTCATCTCCGGCG 60.804 60.000 0.00 0.00 31.85 6.46
4994 7638 1.134965 GTCCTGAAGTGTCATCTCCGG 60.135 57.143 0.00 0.00 31.85 5.14
5001 9441 3.693807 AGGTATACGTCCTGAAGTGTCA 58.306 45.455 0.00 0.00 33.62 3.58
5067 9507 0.739462 TAGCATGTCGAACCTTGGCG 60.739 55.000 0.00 0.00 0.00 5.69
5069 9509 2.352651 CACATAGCATGTCGAACCTTGG 59.647 50.000 0.00 0.00 42.70 3.61
5070 9510 2.223112 GCACATAGCATGTCGAACCTTG 60.223 50.000 0.00 0.00 42.70 3.61
5071 9511 2.009774 GCACATAGCATGTCGAACCTT 58.990 47.619 0.00 0.00 42.70 3.50
5072 9512 1.656652 GCACATAGCATGTCGAACCT 58.343 50.000 0.00 0.00 42.70 3.50
5089 9529 4.473643 CCGTTGAGGAAGGTTGCA 57.526 55.556 0.00 0.00 45.00 4.08
5257 9709 5.391950 CCAGATTTACACGTTGGAGAAATGG 60.392 44.000 0.00 0.00 0.00 3.16
5264 9716 2.610976 CCGTCCAGATTTACACGTTGGA 60.611 50.000 0.00 0.00 35.67 3.53
5267 9719 2.353406 CCTCCGTCCAGATTTACACGTT 60.353 50.000 0.00 0.00 0.00 3.99
5271 9723 1.829222 GTCCCTCCGTCCAGATTTACA 59.171 52.381 0.00 0.00 0.00 2.41
5319 9771 5.059833 CCTCTCACAGCTAATAAATGTCCC 58.940 45.833 0.00 0.00 0.00 4.46
5350 13906 2.158475 TGGGATCAAAGCTTGGTGAGTT 60.158 45.455 0.00 0.00 0.00 3.01
5351 13907 1.425066 TGGGATCAAAGCTTGGTGAGT 59.575 47.619 0.00 0.00 0.00 3.41
5447 14003 3.055094 ACCCCTGTCTGCTATTGTAACTG 60.055 47.826 0.00 0.00 0.00 3.16
5462 14018 1.371467 TCACATTCATCCACCCCTGT 58.629 50.000 0.00 0.00 0.00 4.00
5522 14078 1.333619 TCAAAGCTTTCTGTCGCCAAC 59.666 47.619 9.23 0.00 0.00 3.77
5527 14083 1.497991 TCGGTCAAAGCTTTCTGTCG 58.502 50.000 9.23 10.97 0.00 4.35
5557 14113 7.434897 TGCTGAACACTGAACAAAAACATTATC 59.565 33.333 0.00 0.00 0.00 1.75
5584 14140 0.835941 AGTGGCCATAGCAGAAGGAG 59.164 55.000 9.72 0.00 42.56 3.69
5602 14158 6.762187 ACAGATATCTTGATGAACTGAAGCAG 59.238 38.462 1.33 0.00 37.52 4.24
5653 14209 1.830477 TGGGCATCCAAGGTTTTATGC 59.170 47.619 0.00 0.00 43.13 3.14
5748 14304 0.528901 CACGACGAACTCACACCCAA 60.529 55.000 0.00 0.00 0.00 4.12
5798 14354 2.474410 AATCTGTCGGGACAACTTCC 57.526 50.000 2.81 0.00 45.00 3.46
5803 14359 6.657117 TGAATGAATAAAATCTGTCGGGACAA 59.343 34.615 2.81 0.00 41.33 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.