Multiple sequence alignment - TraesCS6B01G469100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G469100 chr6B 100.000 3167 0 0 1 3167 718230025 718233191 0.000000e+00 5849.0
1 TraesCS6B01G469100 chr6B 83.203 1024 160 4 986 2000 718294212 718295232 0.000000e+00 928.0
2 TraesCS6B01G469100 chr6B 73.842 799 166 35 1083 1854 718597787 718597005 8.650000e-71 278.0
3 TraesCS6B01G469100 chr6B 72.712 590 100 41 1300 1861 718591339 718590783 1.180000e-29 141.0
4 TraesCS6B01G469100 chr6B 89.899 99 2 5 2750 2840 718282023 718282121 1.540000e-23 121.0
5 TraesCS6B01G469100 chr7D 79.183 1542 247 41 987 2481 602291837 602293351 0.000000e+00 1002.0
6 TraesCS6B01G469100 chr7D 77.122 1661 263 72 973 2573 602286736 602288339 0.000000e+00 854.0
7 TraesCS6B01G469100 chrUn 79.091 1540 254 42 987 2481 87219808 87221324 0.000000e+00 998.0
8 TraesCS6B01G469100 chrUn 75.812 1662 280 68 974 2575 87052781 87051182 0.000000e+00 730.0
9 TraesCS6B01G469100 chrUn 75.527 1234 228 51 1089 2281 330579578 330578378 3.590000e-149 538.0
10 TraesCS6B01G469100 chrUn 77.169 219 31 12 2739 2947 87221797 87222006 3.340000e-20 110.0
11 TraesCS6B01G469100 chr5D 79.498 1395 225 40 978 2337 423535326 423533958 0.000000e+00 935.0
12 TraesCS6B01G469100 chr5B 79.197 1394 228 35 978 2337 511372897 511371532 0.000000e+00 911.0
13 TraesCS6B01G469100 chr5A 78.369 1447 241 41 932 2337 537125017 537123602 0.000000e+00 872.0
14 TraesCS6B01G469100 chr7A 76.216 1665 276 71 961 2573 694044388 694045984 0.000000e+00 771.0
15 TraesCS6B01G469100 chr7A 77.425 1072 160 60 1551 2566 712466989 712465944 5.930000e-157 564.0
16 TraesCS6B01G469100 chr6A 87.714 643 41 27 2122 2752 616909705 616909089 0.000000e+00 715.0
17 TraesCS6B01G469100 chr6A 79.875 1123 87 40 439 1500 616910874 616909830 0.000000e+00 693.0
18 TraesCS6B01G469100 chr6A 75.442 1189 238 39 1000 2146 17947370 17946194 2.160000e-146 529.0
19 TraesCS6B01G469100 chr6A 75.704 1066 185 45 1300 2337 616890749 616889730 1.720000e-127 466.0
20 TraesCS6B01G469100 chr6A 76.200 521 86 28 1294 1788 616794322 616794830 1.140000e-59 241.0
21 TraesCS6B01G469100 chr6A 82.967 182 12 5 2791 2965 616908966 616908797 2.550000e-31 147.0
22 TraesCS6B01G469100 chr6A 94.737 76 1 2 178 252 616911081 616911008 7.180000e-22 115.0
23 TraesCS6B01G469100 chr6A 76.351 148 26 4 1203 1350 616901400 616901262 1.580000e-08 71.3
24 TraesCS6B01G469100 chr6A 96.875 32 1 0 2740 2771 616908992 616908961 2.000000e-03 54.7
25 TraesCS6B01G469100 chr6D 85.640 578 64 14 1301 1862 472909747 472910321 9.780000e-165 590.0
26 TraesCS6B01G469100 chr6D 78.893 289 38 17 2075 2356 472910329 472910601 1.170000e-39 174.0
27 TraesCS6B01G469100 chr6D 79.323 266 39 10 2426 2686 472910730 472910984 4.200000e-39 172.0
28 TraesCS6B01G469100 chr7B 75.527 1234 230 50 1089 2281 726363148 726361946 9.990000e-150 540.0
29 TraesCS6B01G469100 chr1B 84.677 124 13 5 2410 2532 630821658 630821776 5.550000e-23 119.0
30 TraesCS6B01G469100 chr1D 82.569 109 12 4 2410 2514 458877361 458877466 4.350000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G469100 chr6B 718230025 718233191 3166 False 5849.00 5849 100.000000 1 3167 1 chr6B.!!$F1 3166
1 TraesCS6B01G469100 chr6B 718294212 718295232 1020 False 928.00 928 83.203000 986 2000 1 chr6B.!!$F3 1014
2 TraesCS6B01G469100 chr6B 718597005 718597787 782 True 278.00 278 73.842000 1083 1854 1 chr6B.!!$R2 771
3 TraesCS6B01G469100 chr7D 602286736 602293351 6615 False 928.00 1002 78.152500 973 2573 2 chr7D.!!$F1 1600
4 TraesCS6B01G469100 chrUn 87051182 87052781 1599 True 730.00 730 75.812000 974 2575 1 chrUn.!!$R1 1601
5 TraesCS6B01G469100 chrUn 87219808 87222006 2198 False 554.00 998 78.130000 987 2947 2 chrUn.!!$F1 1960
6 TraesCS6B01G469100 chrUn 330578378 330579578 1200 True 538.00 538 75.527000 1089 2281 1 chrUn.!!$R2 1192
7 TraesCS6B01G469100 chr5D 423533958 423535326 1368 True 935.00 935 79.498000 978 2337 1 chr5D.!!$R1 1359
8 TraesCS6B01G469100 chr5B 511371532 511372897 1365 True 911.00 911 79.197000 978 2337 1 chr5B.!!$R1 1359
9 TraesCS6B01G469100 chr5A 537123602 537125017 1415 True 872.00 872 78.369000 932 2337 1 chr5A.!!$R1 1405
10 TraesCS6B01G469100 chr7A 694044388 694045984 1596 False 771.00 771 76.216000 961 2573 1 chr7A.!!$F1 1612
11 TraesCS6B01G469100 chr7A 712465944 712466989 1045 True 564.00 564 77.425000 1551 2566 1 chr7A.!!$R1 1015
12 TraesCS6B01G469100 chr6A 17946194 17947370 1176 True 529.00 529 75.442000 1000 2146 1 chr6A.!!$R1 1146
13 TraesCS6B01G469100 chr6A 616889730 616890749 1019 True 466.00 466 75.704000 1300 2337 1 chr6A.!!$R2 1037
14 TraesCS6B01G469100 chr6A 616908797 616911081 2284 True 344.94 715 88.433600 178 2965 5 chr6A.!!$R4 2787
15 TraesCS6B01G469100 chr6A 616794322 616794830 508 False 241.00 241 76.200000 1294 1788 1 chr6A.!!$F1 494
16 TraesCS6B01G469100 chr6D 472909747 472910984 1237 False 312.00 590 81.285333 1301 2686 3 chr6D.!!$F1 1385
17 TraesCS6B01G469100 chr7B 726361946 726363148 1202 True 540.00 540 75.527000 1089 2281 1 chr7B.!!$R1 1192

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.035598 TTCGATTTTCACCTGGCCGA 59.964 50.0 0.0 0.0 0.00 5.54 F
248 249 0.105913 ACCCTAGCTCTAGTCAGGCC 60.106 60.0 0.0 0.0 0.00 5.19 F
250 251 0.105964 CCTAGCTCTAGTCAGGCCCA 60.106 60.0 0.0 0.0 0.00 5.36 F
715 765 0.320421 GCCTCAACTTACGGCACTGA 60.320 55.0 0.0 0.0 43.25 3.41 F
1584 1752 0.324738 TTCAAACCAAGGTGGGTGCA 60.325 50.0 0.0 0.0 35.52 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1121 1216 0.394938 TAACTCCTCTTTGGTGCGCA 59.605 50.000 5.66 5.66 37.07 6.09 R
2004 2236 0.554792 CCTCCTTCAATCCCTGGCAT 59.445 55.000 0.00 0.00 0.00 4.40 R
2040 2272 2.671682 GAGGGGGACTGGACTTGC 59.328 66.667 0.00 0.00 0.00 4.01 R
2088 2320 3.118738 AGGTCGAAACTACATGATCCCAC 60.119 47.826 0.00 0.00 0.00 4.61 R
2966 4541 0.106769 TGAAGGCTCAAGGTGCAACA 60.107 50.000 3.64 0.00 39.98 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.731348 GAGGCGGTCGATGCGATC 60.731 66.667 6.53 0.00 38.42 3.69
19 20 4.286320 AGGCGGTCGATGCGATCC 62.286 66.667 6.53 0.00 38.42 3.36
21 22 4.624117 GCGGTCGATGCGATCCGA 62.624 66.667 24.04 2.63 45.55 4.55
22 23 2.255554 CGGTCGATGCGATCCGAT 59.744 61.111 18.77 0.00 45.55 4.18
23 24 1.371758 CGGTCGATGCGATCCGATT 60.372 57.895 18.77 0.00 45.55 3.34
24 25 0.939577 CGGTCGATGCGATCCGATTT 60.940 55.000 18.77 0.00 45.55 2.17
25 26 1.217882 GGTCGATGCGATCCGATTTT 58.782 50.000 0.00 0.00 38.42 1.82
26 27 1.597663 GGTCGATGCGATCCGATTTTT 59.402 47.619 0.00 0.00 38.42 1.94
44 45 3.378911 TTTTTCGATTTTCACCTGGCC 57.621 42.857 0.00 0.00 0.00 5.36
45 46 0.878416 TTTCGATTTTCACCTGGCCG 59.122 50.000 0.00 0.00 0.00 6.13
46 47 0.035598 TTCGATTTTCACCTGGCCGA 59.964 50.000 0.00 0.00 0.00 5.54
47 48 0.672401 TCGATTTTCACCTGGCCGAC 60.672 55.000 0.00 0.00 0.00 4.79
48 49 1.794222 GATTTTCACCTGGCCGACG 59.206 57.895 0.00 0.00 0.00 5.12
49 50 2.253414 GATTTTCACCTGGCCGACGC 62.253 60.000 0.00 0.00 0.00 5.19
74 75 8.630278 CGTAGCGTAGGCATAATATTATCTTT 57.370 34.615 10.48 0.00 43.41 2.52
75 76 8.532341 CGTAGCGTAGGCATAATATTATCTTTG 58.468 37.037 10.48 0.00 43.41 2.77
76 77 9.367444 GTAGCGTAGGCATAATATTATCTTTGT 57.633 33.333 10.48 0.00 43.41 2.83
77 78 8.480643 AGCGTAGGCATAATATTATCTTTGTC 57.519 34.615 10.48 0.00 43.41 3.18
78 79 7.549488 AGCGTAGGCATAATATTATCTTTGTCC 59.451 37.037 10.48 3.05 43.41 4.02
79 80 7.333423 GCGTAGGCATAATATTATCTTTGTCCA 59.667 37.037 4.93 0.00 39.62 4.02
80 81 8.873830 CGTAGGCATAATATTATCTTTGTCCAG 58.126 37.037 4.93 0.00 0.00 3.86
81 82 9.726438 GTAGGCATAATATTATCTTTGTCCAGT 57.274 33.333 4.93 0.00 0.00 4.00
83 84 9.289782 AGGCATAATATTATCTTTGTCCAGTTC 57.710 33.333 4.93 0.00 0.00 3.01
84 85 9.289782 GGCATAATATTATCTTTGTCCAGTTCT 57.710 33.333 4.93 0.00 0.00 3.01
94 95 8.753497 ATCTTTGTCCAGTTCTTCTTTTTAGT 57.247 30.769 0.00 0.00 0.00 2.24
95 96 8.209917 TCTTTGTCCAGTTCTTCTTTTTAGTC 57.790 34.615 0.00 0.00 0.00 2.59
96 97 8.047310 TCTTTGTCCAGTTCTTCTTTTTAGTCT 58.953 33.333 0.00 0.00 0.00 3.24
97 98 9.326413 CTTTGTCCAGTTCTTCTTTTTAGTCTA 57.674 33.333 0.00 0.00 0.00 2.59
98 99 9.847224 TTTGTCCAGTTCTTCTTTTTAGTCTAT 57.153 29.630 0.00 0.00 0.00 1.98
99 100 9.847224 TTGTCCAGTTCTTCTTTTTAGTCTATT 57.153 29.630 0.00 0.00 0.00 1.73
100 101 9.847224 TGTCCAGTTCTTCTTTTTAGTCTATTT 57.153 29.630 0.00 0.00 0.00 1.40
141 142 4.569719 TTTTTGAGAGGGGTAGGCTTAG 57.430 45.455 0.00 0.00 0.00 2.18
142 143 1.497161 TTGAGAGGGGTAGGCTTAGC 58.503 55.000 0.00 0.00 0.00 3.09
152 153 2.671070 GGCTTAGCCCAGCTGTGA 59.329 61.111 13.12 0.00 44.06 3.58
153 154 1.451028 GGCTTAGCCCAGCTGTGAG 60.451 63.158 13.12 1.46 44.06 3.51
154 155 1.599047 GCTTAGCCCAGCTGTGAGA 59.401 57.895 13.81 0.00 40.10 3.27
155 156 0.461693 GCTTAGCCCAGCTGTGAGAG 60.462 60.000 13.81 5.09 40.10 3.20
163 164 2.433318 GCTGTGAGAGCGGTGGAC 60.433 66.667 0.00 0.00 38.15 4.02
165 166 3.633094 CTGTGAGAGCGGTGGACGG 62.633 68.421 0.00 0.00 44.51 4.79
166 167 4.436998 GTGAGAGCGGTGGACGGG 62.437 72.222 0.00 0.00 44.51 5.28
209 210 1.482182 GGCCCTAAAATGAAAGCCCAG 59.518 52.381 0.00 0.00 34.23 4.45
247 248 1.410882 CAACCCTAGCTCTAGTCAGGC 59.589 57.143 0.00 0.00 0.00 4.85
248 249 0.105913 ACCCTAGCTCTAGTCAGGCC 60.106 60.000 0.00 0.00 0.00 5.19
249 250 0.830023 CCCTAGCTCTAGTCAGGCCC 60.830 65.000 0.00 0.00 0.00 5.80
250 251 0.105964 CCTAGCTCTAGTCAGGCCCA 60.106 60.000 0.00 0.00 0.00 5.36
251 252 1.689575 CCTAGCTCTAGTCAGGCCCAA 60.690 57.143 0.00 0.00 0.00 4.12
252 253 1.686052 CTAGCTCTAGTCAGGCCCAAG 59.314 57.143 0.00 0.00 0.00 3.61
253 254 1.153269 GCTCTAGTCAGGCCCAAGC 60.153 63.158 0.00 0.00 38.76 4.01
286 287 4.803426 GAGGCCGCGAGTGGAGTG 62.803 72.222 8.23 0.00 0.00 3.51
338 357 2.815647 CGGTGCGGCTCTCTTTCC 60.816 66.667 0.00 0.00 0.00 3.13
352 376 3.635869 TTTCCGGGGAGGGGAGGAG 62.636 68.421 0.00 0.00 41.52 3.69
399 423 2.962569 CGAGGAGCAACGTCAGGA 59.037 61.111 0.00 0.00 33.59 3.86
400 424 1.513158 CGAGGAGCAACGTCAGGAT 59.487 57.895 0.00 0.00 33.59 3.24
432 456 3.508840 CGGCGCAATCCCAGGTTC 61.509 66.667 10.83 0.00 0.00 3.62
433 457 3.508840 GGCGCAATCCCAGGTTCG 61.509 66.667 10.83 0.00 0.00 3.95
434 458 4.179579 GCGCAATCCCAGGTTCGC 62.180 66.667 0.30 0.00 35.82 4.70
435 459 3.508840 CGCAATCCCAGGTTCGCC 61.509 66.667 0.00 0.00 37.60 5.54
436 460 3.140814 GCAATCCCAGGTTCGCCC 61.141 66.667 0.00 0.00 38.27 6.13
437 461 2.440247 CAATCCCAGGTTCGCCCC 60.440 66.667 0.00 0.00 38.27 5.80
438 462 3.739613 AATCCCAGGTTCGCCCCC 61.740 66.667 0.00 0.00 38.27 5.40
441 465 4.060667 CCCAGGTTCGCCCCCAAT 62.061 66.667 0.00 0.00 38.27 3.16
454 478 2.371841 GCCCCCAATTCTGAAACCTTTT 59.628 45.455 0.00 0.00 0.00 2.27
455 479 3.580895 GCCCCCAATTCTGAAACCTTTTA 59.419 43.478 0.00 0.00 0.00 1.52
491 515 3.068165 CGAATTAAGGAGCCCCAATTTCC 59.932 47.826 0.00 0.00 33.88 3.13
497 525 2.158173 AGGAGCCCCAATTTCCTTCAAA 60.158 45.455 0.00 0.00 38.13 2.69
511 539 5.287674 TCCTTCAAACATGAAAATGGCAA 57.712 34.783 0.00 0.00 0.00 4.52
551 597 1.895131 ACTGATGAGCGCCCAAAATTT 59.105 42.857 2.29 0.00 0.00 1.82
561 607 3.064958 GCGCCCAAAATTTACTAGAGACC 59.935 47.826 0.00 0.00 0.00 3.85
574 620 5.654901 ACTAGAGACCTGTCCTGATGATA 57.345 43.478 0.00 0.00 0.00 2.15
588 634 6.041409 GTCCTGATGATACTGGAAATCAGAGA 59.959 42.308 14.41 8.99 45.81 3.10
590 636 6.166984 TGATGATACTGGAAATCAGAGACC 57.833 41.667 0.00 0.00 46.18 3.85
592 638 5.604758 TGATACTGGAAATCAGAGACCTG 57.395 43.478 0.00 0.00 46.18 4.00
594 640 3.971245 ACTGGAAATCAGAGACCTGTC 57.029 47.619 0.00 0.00 46.18 3.51
597 643 2.978978 TGGAAATCAGAGACCTGTCCAA 59.021 45.455 0.00 0.00 39.02 3.53
598 644 3.394274 TGGAAATCAGAGACCTGTCCAAA 59.606 43.478 0.00 0.00 39.02 3.28
599 645 4.141274 TGGAAATCAGAGACCTGTCCAAAA 60.141 41.667 0.00 0.00 39.02 2.44
601 647 5.478332 GGAAATCAGAGACCTGTCCAAAATT 59.522 40.000 0.00 0.00 41.16 1.82
602 648 6.015095 GGAAATCAGAGACCTGTCCAAAATTT 60.015 38.462 0.00 0.00 41.16 1.82
603 649 6.983906 AATCAGAGACCTGTCCAAAATTTT 57.016 33.333 0.00 0.00 41.16 1.82
604 650 6.581171 ATCAGAGACCTGTCCAAAATTTTC 57.419 37.500 0.00 0.00 41.16 2.29
605 651 5.445069 TCAGAGACCTGTCCAAAATTTTCA 58.555 37.500 0.00 0.00 41.16 2.69
607 653 5.300286 CAGAGACCTGTCCAAAATTTTCACT 59.700 40.000 0.00 0.00 35.70 3.41
608 654 6.486657 CAGAGACCTGTCCAAAATTTTCACTA 59.513 38.462 0.00 0.00 35.70 2.74
610 656 7.559897 AGAGACCTGTCCAAAATTTTCACTAAA 59.440 33.333 0.00 0.00 0.00 1.85
611 657 8.073467 AGACCTGTCCAAAATTTTCACTAAAA 57.927 30.769 0.00 0.00 38.87 1.52
612 658 8.704668 AGACCTGTCCAAAATTTTCACTAAAAT 58.295 29.630 0.00 0.00 45.20 1.82
666 716 5.061920 CAGTAGACTGAGAACTTGGGTAC 57.938 47.826 3.45 0.00 46.59 3.34
667 717 4.523173 CAGTAGACTGAGAACTTGGGTACA 59.477 45.833 3.45 0.00 46.59 2.90
668 718 5.186021 CAGTAGACTGAGAACTTGGGTACAT 59.814 44.000 3.45 0.00 46.59 2.29
669 719 4.543590 AGACTGAGAACTTGGGTACATG 57.456 45.455 0.00 0.00 0.00 3.21
670 720 3.904339 AGACTGAGAACTTGGGTACATGT 59.096 43.478 2.69 2.69 36.64 3.21
671 721 4.021016 AGACTGAGAACTTGGGTACATGTC 60.021 45.833 0.00 0.00 34.27 3.06
672 722 3.008049 ACTGAGAACTTGGGTACATGTCC 59.992 47.826 0.00 3.51 34.27 4.02
673 723 2.304761 TGAGAACTTGGGTACATGTCCC 59.695 50.000 20.48 20.48 44.81 4.46
674 724 1.633945 AGAACTTGGGTACATGTCCCC 59.366 52.381 19.41 19.41 44.00 4.81
675 725 1.633945 GAACTTGGGTACATGTCCCCT 59.366 52.381 25.45 6.86 44.00 4.79
676 726 0.991920 ACTTGGGTACATGTCCCCTG 59.008 55.000 25.45 19.62 44.00 4.45
677 727 0.394352 CTTGGGTACATGTCCCCTGC 60.394 60.000 25.45 1.81 44.00 4.85
678 728 1.858739 TTGGGTACATGTCCCCTGCC 61.859 60.000 25.45 8.99 44.00 4.85
679 729 2.001269 GGGTACATGTCCCCTGCCT 61.001 63.158 18.99 0.00 39.08 4.75
703 753 5.586243 TGCACTCTAAATTATCTGCCTCAAC 59.414 40.000 0.00 0.00 0.00 3.18
704 754 5.819901 GCACTCTAAATTATCTGCCTCAACT 59.180 40.000 0.00 0.00 0.00 3.16
705 755 6.317391 GCACTCTAAATTATCTGCCTCAACTT 59.683 38.462 0.00 0.00 0.00 2.66
706 756 7.495934 GCACTCTAAATTATCTGCCTCAACTTA 59.504 37.037 0.00 0.00 0.00 2.24
707 757 8.821894 CACTCTAAATTATCTGCCTCAACTTAC 58.178 37.037 0.00 0.00 0.00 2.34
708 758 7.707035 ACTCTAAATTATCTGCCTCAACTTACG 59.293 37.037 0.00 0.00 0.00 3.18
709 759 6.984474 TCTAAATTATCTGCCTCAACTTACGG 59.016 38.462 0.00 0.00 0.00 4.02
710 760 2.596904 TATCTGCCTCAACTTACGGC 57.403 50.000 0.00 0.00 44.02 5.68
713 763 4.695560 GCCTCAACTTACGGCACT 57.304 55.556 0.00 0.00 43.25 4.40
714 764 2.162716 GCCTCAACTTACGGCACTG 58.837 57.895 0.00 0.00 43.25 3.66
715 765 0.320421 GCCTCAACTTACGGCACTGA 60.320 55.000 0.00 0.00 43.25 3.41
716 766 1.876416 GCCTCAACTTACGGCACTGAA 60.876 52.381 0.00 0.00 43.25 3.02
733 783 6.145535 GCACTGAATAAACTGGAACTGAAAG 58.854 40.000 0.00 0.00 42.29 2.62
769 819 5.940192 TGAGATACAAACAAATTCGCACT 57.060 34.783 0.00 0.00 0.00 4.40
792 842 4.660168 AGAGAGATTCTTGTTTGCCATGT 58.340 39.130 0.00 0.00 29.61 3.21
793 843 5.809001 AGAGAGATTCTTGTTTGCCATGTA 58.191 37.500 0.00 0.00 29.61 2.29
795 845 6.716628 AGAGAGATTCTTGTTTGCCATGTAAA 59.283 34.615 0.00 0.00 29.61 2.01
796 846 7.231317 AGAGAGATTCTTGTTTGCCATGTAAAA 59.769 33.333 0.00 0.00 29.61 1.52
797 847 7.899973 AGAGATTCTTGTTTGCCATGTAAAAT 58.100 30.769 0.00 0.00 0.00 1.82
804 871 8.821894 TCTTGTTTGCCATGTAAAATTGTAAAC 58.178 29.630 0.00 0.00 0.00 2.01
812 879 7.095397 GCCATGTAAAATTGTAAACAGGTTTCC 60.095 37.037 0.00 0.00 34.23 3.13
829 896 1.904287 TCCTGGTGCGCAAATAGTTT 58.096 45.000 14.00 0.00 0.00 2.66
833 900 1.068610 TGGTGCGCAAATAGTTTCAGC 60.069 47.619 14.00 0.00 0.00 4.26
834 901 1.068610 GGTGCGCAAATAGTTTCAGCA 60.069 47.619 14.00 0.00 32.14 4.41
835 902 2.415893 GGTGCGCAAATAGTTTCAGCAT 60.416 45.455 14.00 0.00 35.51 3.79
836 903 3.181501 GGTGCGCAAATAGTTTCAGCATA 60.182 43.478 14.00 0.00 35.51 3.14
837 904 4.498009 GGTGCGCAAATAGTTTCAGCATAT 60.498 41.667 14.00 0.00 35.51 1.78
838 905 5.277779 GGTGCGCAAATAGTTTCAGCATATA 60.278 40.000 14.00 0.00 35.51 0.86
839 906 6.198687 GTGCGCAAATAGTTTCAGCATATAA 58.801 36.000 14.00 0.00 35.51 0.98
840 907 6.857964 GTGCGCAAATAGTTTCAGCATATAAT 59.142 34.615 14.00 0.00 35.51 1.28
841 908 8.015087 GTGCGCAAATAGTTTCAGCATATAATA 58.985 33.333 14.00 0.00 35.51 0.98
842 909 8.563732 TGCGCAAATAGTTTCAGCATATAATAA 58.436 29.630 8.16 0.00 30.41 1.40
843 910 9.055248 GCGCAAATAGTTTCAGCATATAATAAG 57.945 33.333 0.30 0.00 0.00 1.73
878 945 3.832490 GGTTTAGCTTTCATCAACCCCTT 59.168 43.478 0.00 0.00 32.20 3.95
882 949 3.690460 AGCTTTCATCAACCCCTTACAG 58.310 45.455 0.00 0.00 0.00 2.74
884 951 3.691609 GCTTTCATCAACCCCTTACAGAG 59.308 47.826 0.00 0.00 0.00 3.35
976 1050 5.185668 TGGTTTCAATTGTGACTGACATG 57.814 39.130 5.13 0.00 33.40 3.21
1006 1080 1.191489 TGGCAGGTTCCTCATGTCGA 61.191 55.000 0.00 0.00 35.03 4.20
1032 1113 1.138883 CGGTGTGTCCATCGTCGAT 59.861 57.895 0.75 0.75 40.35 3.59
1080 1170 1.447643 GGCCATCTACGCTGGTGAT 59.552 57.895 0.00 0.00 36.10 3.06
1121 1216 1.306654 TCATGGTCCGGGGCTACTT 60.307 57.895 0.00 0.00 0.00 2.24
1251 1356 1.547820 TGCGCTGACTTCATCTCTCTT 59.452 47.619 9.73 0.00 0.00 2.85
1284 1401 2.418976 TCTCTTTGATGACGACGACGAT 59.581 45.455 15.32 0.00 42.66 3.73
1352 1472 2.641815 ACCAGGTTGAGAAGCAGAATCT 59.358 45.455 0.00 0.00 0.00 2.40
1370 1490 7.361542 GCAGAATCTGATGTACATTTGTCAAGT 60.362 37.037 15.38 0.00 32.44 3.16
1374 1497 9.725019 AATCTGATGTACATTTGTCAAGTTAGA 57.275 29.630 10.30 0.00 0.00 2.10
1381 1504 7.771361 TGTACATTTGTCAAGTTAGAAAGACCA 59.229 33.333 0.00 0.00 0.00 4.02
1392 1515 2.050144 AGAAAGACCAGCACCTTCTCA 58.950 47.619 0.00 0.00 0.00 3.27
1414 1537 1.549203 CAGTGCTATTTGCTGGGGTT 58.451 50.000 0.00 0.00 43.37 4.11
1434 1557 4.438744 GGTTGTGACAAGTTTGTGAGAAGG 60.439 45.833 0.00 0.00 42.43 3.46
1455 1578 1.360551 CGCCCTCGAACGATCATCT 59.639 57.895 0.00 0.00 38.10 2.90
1584 1752 0.324738 TTCAAACCAAGGTGGGTGCA 60.325 50.000 0.00 0.00 35.52 4.57
1587 1755 0.755327 AAACCAAGGTGGGTGCAGAC 60.755 55.000 0.00 0.00 35.52 3.51
1617 1785 1.122019 AGGTCAGCGGTGAGAGGTTT 61.122 55.000 19.24 0.00 31.53 3.27
1641 1809 4.312231 CACCGGTGTGTGCTTGCG 62.312 66.667 26.95 0.00 37.72 4.85
1727 1907 4.217118 ACAGATCAAAGACATGGAAGCAAC 59.783 41.667 0.00 0.00 0.00 4.17
1773 1963 8.956446 TCTTCATCTACACAGATATATTCCCA 57.044 34.615 0.00 0.00 39.62 4.37
1788 1993 2.948889 TCCCATTGAGAGAGGAGGAA 57.051 50.000 0.00 0.00 0.00 3.36
1839 2071 3.990959 ATGGAAGAGGGACAAGAAGAC 57.009 47.619 0.00 0.00 0.00 3.01
1840 2072 2.689658 TGGAAGAGGGACAAGAAGACA 58.310 47.619 0.00 0.00 0.00 3.41
1841 2073 3.045634 TGGAAGAGGGACAAGAAGACAA 58.954 45.455 0.00 0.00 0.00 3.18
1843 2075 2.849294 AGAGGGACAAGAAGACAAGC 57.151 50.000 0.00 0.00 0.00 4.01
1849 2081 1.949525 GACAAGAAGACAAGCCAGCAA 59.050 47.619 0.00 0.00 0.00 3.91
1862 2094 2.494870 AGCCAGCAAAGGATGAAATGAC 59.505 45.455 0.00 0.00 30.05 3.06
1863 2095 2.231964 GCCAGCAAAGGATGAAATGACA 59.768 45.455 0.00 0.00 30.05 3.58
1871 2103 6.623486 CAAAGGATGAAATGACACTGCAATA 58.377 36.000 0.00 0.00 0.00 1.90
1904 2136 0.395586 TTTGTGGCAGCAGACAGGTT 60.396 50.000 0.00 0.00 29.33 3.50
1940 2172 4.461405 CTCAAGTTCATCTGTGAAAAGCG 58.539 43.478 0.00 0.00 45.38 4.68
1941 2173 2.975851 CAAGTTCATCTGTGAAAAGCGC 59.024 45.455 0.00 0.00 45.38 5.92
1976 2208 0.530744 GGTGTGAGCTCGGTGATGTA 59.469 55.000 9.64 0.00 0.00 2.29
2004 2236 2.230994 CTCTAGCCGAGCAGCACCAA 62.231 60.000 0.00 0.00 31.99 3.67
2040 2272 2.159517 GGAGGCGTGCTTGAAGTTTATG 60.160 50.000 0.00 0.00 0.00 1.90
2088 2320 5.410067 CAACAAGTAATGGCAACTAATGGG 58.590 41.667 0.00 0.00 37.61 4.00
2290 2611 4.330944 TTGTTCTCGTCAGGTAATGTGT 57.669 40.909 0.00 0.00 0.00 3.72
2339 2666 4.460382 ACTTATGGCCAAATTGTCTCTGTG 59.540 41.667 10.96 0.00 0.00 3.66
2407 2823 5.523916 CGCTGTACTATGCAAGTTCCTTAAT 59.476 40.000 6.82 0.00 39.80 1.40
2428 2844 8.792831 TTAATTAGCTAGTCGTTTAATCCTCG 57.207 34.615 0.00 0.00 0.00 4.63
2456 2883 4.871933 TCTCTGTGCATTAGTTGTCTCA 57.128 40.909 0.00 0.00 0.00 3.27
2457 2884 5.411831 TCTCTGTGCATTAGTTGTCTCAT 57.588 39.130 0.00 0.00 0.00 2.90
2458 2885 6.530019 TCTCTGTGCATTAGTTGTCTCATA 57.470 37.500 0.00 0.00 0.00 2.15
2654 3326 5.542779 AGTGTCAAATCTTGGTCTCTGTAC 58.457 41.667 0.00 0.00 0.00 2.90
2696 3368 5.600908 TTCTGGTGTATTTTGAAGCGTAC 57.399 39.130 0.00 0.00 0.00 3.67
2718 3390 4.992319 ACATGGTTGATTGCTGTCATTTTG 59.008 37.500 0.00 0.00 0.00 2.44
2742 3415 2.746142 CGATGAAAAGCTGGGGATAGCA 60.746 50.000 0.00 0.00 46.07 3.49
2783 4330 5.569059 CGATTAATGTCAGTTTGCAGGAAAC 59.431 40.000 9.45 9.45 43.89 2.78
2792 4339 0.251742 TTGCAGGAAACCAGGGGATG 60.252 55.000 0.00 0.00 0.00 3.51
2795 4342 0.698238 CAGGAAACCAGGGGATGTGA 59.302 55.000 0.00 0.00 0.00 3.58
2843 4402 4.323868 GTCAGACTCAGTACAAACATACGC 59.676 45.833 0.00 0.00 0.00 4.42
2844 4403 4.022676 TCAGACTCAGTACAAACATACGCA 60.023 41.667 0.00 0.00 0.00 5.24
2845 4404 4.684242 CAGACTCAGTACAAACATACGCAA 59.316 41.667 0.00 0.00 0.00 4.85
2846 4405 5.176774 CAGACTCAGTACAAACATACGCAAA 59.823 40.000 0.00 0.00 0.00 3.68
2847 4406 5.932303 AGACTCAGTACAAACATACGCAAAT 59.068 36.000 0.00 0.00 0.00 2.32
2848 4407 6.426937 AGACTCAGTACAAACATACGCAAATT 59.573 34.615 0.00 0.00 0.00 1.82
2849 4408 6.370593 ACTCAGTACAAACATACGCAAATTG 58.629 36.000 0.00 0.00 0.00 2.32
2965 4540 4.339748 TGTTCAAAGGCAGTGGCAATATA 58.660 39.130 20.04 0.00 43.71 0.86
2966 4541 4.955450 TGTTCAAAGGCAGTGGCAATATAT 59.045 37.500 20.04 0.00 43.71 0.86
2967 4542 5.163530 TGTTCAAAGGCAGTGGCAATATATG 60.164 40.000 20.04 8.04 43.71 1.78
2968 4543 4.535781 TCAAAGGCAGTGGCAATATATGT 58.464 39.130 20.04 0.00 43.71 2.29
2969 4544 4.955450 TCAAAGGCAGTGGCAATATATGTT 59.045 37.500 20.04 0.00 43.71 2.71
2970 4545 4.924305 AAGGCAGTGGCAATATATGTTG 57.076 40.909 20.04 7.77 43.71 3.33
2982 4557 2.814805 ATATGTTGCACCTTGAGCCT 57.185 45.000 0.00 0.00 0.00 4.58
2983 4558 2.584835 TATGTTGCACCTTGAGCCTT 57.415 45.000 0.00 0.00 0.00 4.35
2984 4559 1.251251 ATGTTGCACCTTGAGCCTTC 58.749 50.000 0.00 0.00 0.00 3.46
2985 4560 0.106769 TGTTGCACCTTGAGCCTTCA 60.107 50.000 0.00 0.00 0.00 3.02
2986 4561 1.251251 GTTGCACCTTGAGCCTTCAT 58.749 50.000 0.00 0.00 32.27 2.57
2987 4562 1.200948 GTTGCACCTTGAGCCTTCATC 59.799 52.381 0.00 0.00 32.27 2.92
2988 4563 0.401356 TGCACCTTGAGCCTTCATCA 59.599 50.000 0.00 0.00 32.27 3.07
2989 4564 1.202915 TGCACCTTGAGCCTTCATCAA 60.203 47.619 0.00 0.00 35.45 2.57
2994 4569 3.826236 CTTGAGCCTTCATCAAGTGTG 57.174 47.619 7.39 0.00 45.58 3.82
2995 4570 3.405831 CTTGAGCCTTCATCAAGTGTGA 58.594 45.455 7.39 0.00 45.58 3.58
2996 4571 3.049708 TGAGCCTTCATCAAGTGTGAG 57.950 47.619 0.00 0.00 37.14 3.51
2997 4572 2.289882 TGAGCCTTCATCAAGTGTGAGG 60.290 50.000 0.00 0.00 37.14 3.86
2998 4573 1.004044 AGCCTTCATCAAGTGTGAGGG 59.996 52.381 0.43 0.43 43.53 4.30
2999 4574 1.271597 GCCTTCATCAAGTGTGAGGGT 60.272 52.381 6.22 0.00 42.86 4.34
3000 4575 2.430465 CCTTCATCAAGTGTGAGGGTG 58.570 52.381 0.00 0.00 37.87 4.61
3001 4576 2.430465 CTTCATCAAGTGTGAGGGTGG 58.570 52.381 0.00 0.00 37.14 4.61
3007 4582 1.426251 AAGTGTGAGGGTGGGCATGA 61.426 55.000 0.00 0.00 0.00 3.07
3008 4583 1.210204 AGTGTGAGGGTGGGCATGAT 61.210 55.000 0.00 0.00 0.00 2.45
3014 4589 4.106179 TGTGAGGGTGGGCATGATTATTAT 59.894 41.667 0.00 0.00 0.00 1.28
3019 4594 4.396166 GGGTGGGCATGATTATTATTCTCG 59.604 45.833 0.00 0.00 0.00 4.04
3023 4598 6.820656 GTGGGCATGATTATTATTCTCGAGAT 59.179 38.462 17.44 9.12 0.00 2.75
3027 4602 9.809096 GGCATGATTATTATTCTCGAGATTAGA 57.191 33.333 17.44 0.62 0.00 2.10
3041 4616 6.499172 TCGAGATTAGATTACTGCTTGTGAG 58.501 40.000 0.00 0.00 0.00 3.51
3043 4618 5.923204 AGATTAGATTACTGCTTGTGAGGG 58.077 41.667 0.00 0.00 0.00 4.30
3050 4625 0.321122 CTGCTTGTGAGGGTGTCTCC 60.321 60.000 0.00 0.00 41.76 3.71
3054 4629 1.816863 TTGTGAGGGTGTCTCCGAGC 61.817 60.000 0.00 0.00 41.76 5.03
3057 4632 0.394488 TGAGGGTGTCTCCGAGCTAG 60.394 60.000 0.00 0.00 41.76 3.42
3063 4736 1.067495 GTGTCTCCGAGCTAGCTTGTT 60.067 52.381 26.83 2.29 0.00 2.83
3070 4743 3.119291 CCGAGCTAGCTTGTTGATACTG 58.881 50.000 26.83 8.42 0.00 2.74
3071 4744 3.119291 CGAGCTAGCTTGTTGATACTGG 58.881 50.000 20.42 0.00 0.00 4.00
3073 4746 4.678044 CGAGCTAGCTTGTTGATACTGGAA 60.678 45.833 20.42 0.00 0.00 3.53
3074 4747 5.363939 GAGCTAGCTTGTTGATACTGGAAT 58.636 41.667 20.42 0.00 0.00 3.01
3075 4748 5.749462 AGCTAGCTTGTTGATACTGGAATT 58.251 37.500 12.68 0.00 0.00 2.17
3076 4749 6.889198 AGCTAGCTTGTTGATACTGGAATTA 58.111 36.000 12.68 0.00 0.00 1.40
3077 4750 6.763610 AGCTAGCTTGTTGATACTGGAATTAC 59.236 38.462 12.68 0.00 0.00 1.89
3079 4752 5.193679 AGCTTGTTGATACTGGAATTACCC 58.806 41.667 0.00 0.00 38.00 3.69
3080 4753 4.947388 GCTTGTTGATACTGGAATTACCCA 59.053 41.667 0.00 0.00 38.00 4.51
3097 4800 7.691993 ATTACCCAGTTGTATAGGTGAAGAT 57.308 36.000 0.00 0.00 33.70 2.40
3098 4801 5.359194 ACCCAGTTGTATAGGTGAAGATG 57.641 43.478 0.00 0.00 0.00 2.90
3100 4803 4.164221 CCCAGTTGTATAGGTGAAGATGGT 59.836 45.833 0.00 0.00 0.00 3.55
3101 4804 5.118990 CCAGTTGTATAGGTGAAGATGGTG 58.881 45.833 0.00 0.00 0.00 4.17
3102 4805 5.104941 CCAGTTGTATAGGTGAAGATGGTGA 60.105 44.000 0.00 0.00 0.00 4.02
3103 4806 6.408548 CCAGTTGTATAGGTGAAGATGGTGAT 60.409 42.308 0.00 0.00 0.00 3.06
3104 4807 6.481313 CAGTTGTATAGGTGAAGATGGTGATG 59.519 42.308 0.00 0.00 0.00 3.07
3105 4808 6.384015 AGTTGTATAGGTGAAGATGGTGATGA 59.616 38.462 0.00 0.00 0.00 2.92
3106 4809 7.071698 AGTTGTATAGGTGAAGATGGTGATGAT 59.928 37.037 0.00 0.00 0.00 2.45
3107 4810 8.367911 GTTGTATAGGTGAAGATGGTGATGATA 58.632 37.037 0.00 0.00 0.00 2.15
3108 4811 8.491045 TGTATAGGTGAAGATGGTGATGATAA 57.509 34.615 0.00 0.00 0.00 1.75
3109 4812 9.104713 TGTATAGGTGAAGATGGTGATGATAAT 57.895 33.333 0.00 0.00 0.00 1.28
3111 4814 6.505048 AGGTGAAGATGGTGATGATAATCA 57.495 37.500 0.00 0.00 0.00 2.57
3112 4815 6.531923 AGGTGAAGATGGTGATGATAATCAG 58.468 40.000 0.00 0.00 0.00 2.90
3117 4976 9.281371 TGAAGATGGTGATGATAATCAGAATTC 57.719 33.333 0.00 0.00 0.00 2.17
3131 4990 0.455005 GAATTCTTGGAGCTGCCTGC 59.545 55.000 1.53 0.00 43.29 4.85
3141 5000 3.488048 GCTGCCTGCTATCTACTCG 57.512 57.895 0.00 0.00 38.95 4.18
3142 5001 0.671251 GCTGCCTGCTATCTACTCGT 59.329 55.000 0.00 0.00 38.95 4.18
3143 5002 1.601663 GCTGCCTGCTATCTACTCGTG 60.602 57.143 0.00 0.00 38.95 4.35
3144 5003 0.385751 TGCCTGCTATCTACTCGTGC 59.614 55.000 0.00 0.00 0.00 5.34
3145 5004 0.671251 GCCTGCTATCTACTCGTGCT 59.329 55.000 0.00 0.00 0.00 4.40
3147 5006 2.095466 GCCTGCTATCTACTCGTGCTAG 60.095 54.545 0.00 0.00 0.00 3.42
3148 5007 3.142951 CCTGCTATCTACTCGTGCTAGT 58.857 50.000 0.00 0.00 0.00 2.57
3149 5008 3.058570 CCTGCTATCTACTCGTGCTAGTG 60.059 52.174 0.00 0.00 0.00 2.74
3152 5011 4.750598 TGCTATCTACTCGTGCTAGTGTAG 59.249 45.833 12.02 12.02 38.71 2.74
3153 5012 4.152759 GCTATCTACTCGTGCTAGTGTAGG 59.847 50.000 15.70 6.54 38.22 3.18
3154 5013 3.900966 TCTACTCGTGCTAGTGTAGGA 57.099 47.619 15.70 5.84 38.22 2.94
3155 5014 4.212143 TCTACTCGTGCTAGTGTAGGAA 57.788 45.455 15.70 2.22 38.22 3.36
3156 5015 4.778579 TCTACTCGTGCTAGTGTAGGAAT 58.221 43.478 15.70 0.00 38.22 3.01
3157 5016 5.191426 TCTACTCGTGCTAGTGTAGGAATT 58.809 41.667 15.70 0.00 38.22 2.17
3159 5018 5.148651 ACTCGTGCTAGTGTAGGAATTTT 57.851 39.130 0.00 0.00 0.00 1.82
3160 5019 4.929808 ACTCGTGCTAGTGTAGGAATTTTG 59.070 41.667 0.00 0.00 0.00 2.44
3161 5020 5.142061 TCGTGCTAGTGTAGGAATTTTGA 57.858 39.130 0.00 0.00 0.00 2.69
3163 5022 6.170506 TCGTGCTAGTGTAGGAATTTTGAAT 58.829 36.000 0.00 0.00 0.00 2.57
3164 5023 6.312918 TCGTGCTAGTGTAGGAATTTTGAATC 59.687 38.462 0.00 0.00 0.00 2.52
3165 5024 6.313905 CGTGCTAGTGTAGGAATTTTGAATCT 59.686 38.462 0.00 0.00 0.00 2.40
3166 5025 7.148407 CGTGCTAGTGTAGGAATTTTGAATCTT 60.148 37.037 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.731348 GATCGCATCGACCGCCTC 60.731 66.667 3.24 0.00 39.18 4.70
24 25 2.287909 CGGCCAGGTGAAAATCGAAAAA 60.288 45.455 2.24 0.00 0.00 1.94
25 26 1.268352 CGGCCAGGTGAAAATCGAAAA 59.732 47.619 2.24 0.00 0.00 2.29
26 27 0.878416 CGGCCAGGTGAAAATCGAAA 59.122 50.000 2.24 0.00 0.00 3.46
27 28 0.035598 TCGGCCAGGTGAAAATCGAA 59.964 50.000 2.24 0.00 0.00 3.71
28 29 0.672401 GTCGGCCAGGTGAAAATCGA 60.672 55.000 2.24 0.00 0.00 3.59
29 30 1.794222 GTCGGCCAGGTGAAAATCG 59.206 57.895 2.24 0.00 0.00 3.34
30 31 1.794222 CGTCGGCCAGGTGAAAATC 59.206 57.895 2.24 0.00 0.00 2.17
31 32 2.332654 GCGTCGGCCAGGTGAAAAT 61.333 57.895 2.24 0.00 0.00 1.82
32 33 2.975799 GCGTCGGCCAGGTGAAAA 60.976 61.111 2.24 0.00 0.00 2.29
48 49 6.207213 AGATAATATTATGCCTACGCTACGC 58.793 40.000 12.74 0.00 35.36 4.42
49 50 8.532341 CAAAGATAATATTATGCCTACGCTACG 58.468 37.037 12.74 0.00 35.36 3.51
50 51 9.367444 ACAAAGATAATATTATGCCTACGCTAC 57.633 33.333 12.74 0.00 35.36 3.58
51 52 9.582431 GACAAAGATAATATTATGCCTACGCTA 57.418 33.333 12.74 0.00 35.36 4.26
52 53 7.549488 GGACAAAGATAATATTATGCCTACGCT 59.451 37.037 12.74 0.00 35.36 5.07
53 54 7.333423 TGGACAAAGATAATATTATGCCTACGC 59.667 37.037 12.74 0.00 0.00 4.42
54 55 8.771920 TGGACAAAGATAATATTATGCCTACG 57.228 34.615 12.74 2.97 0.00 3.51
55 56 9.726438 ACTGGACAAAGATAATATTATGCCTAC 57.274 33.333 12.74 0.00 0.00 3.18
57 58 9.289782 GAACTGGACAAAGATAATATTATGCCT 57.710 33.333 12.74 2.12 0.00 4.75
58 59 9.289782 AGAACTGGACAAAGATAATATTATGCC 57.710 33.333 12.74 6.53 0.00 4.40
68 69 9.847224 ACTAAAAAGAAGAACTGGACAAAGATA 57.153 29.630 0.00 0.00 0.00 1.98
69 70 8.753497 ACTAAAAAGAAGAACTGGACAAAGAT 57.247 30.769 0.00 0.00 0.00 2.40
70 71 8.047310 AGACTAAAAAGAAGAACTGGACAAAGA 58.953 33.333 0.00 0.00 0.00 2.52
71 72 8.214721 AGACTAAAAAGAAGAACTGGACAAAG 57.785 34.615 0.00 0.00 0.00 2.77
72 73 9.847224 ATAGACTAAAAAGAAGAACTGGACAAA 57.153 29.630 0.00 0.00 0.00 2.83
73 74 9.847224 AATAGACTAAAAAGAAGAACTGGACAA 57.153 29.630 0.00 0.00 0.00 3.18
74 75 9.847224 AAATAGACTAAAAAGAAGAACTGGACA 57.153 29.630 0.00 0.00 0.00 4.02
120 121 3.308188 GCTAAGCCTACCCCTCTCAAAAA 60.308 47.826 0.00 0.00 0.00 1.94
121 122 2.238898 GCTAAGCCTACCCCTCTCAAAA 59.761 50.000 0.00 0.00 0.00 2.44
122 123 1.838077 GCTAAGCCTACCCCTCTCAAA 59.162 52.381 0.00 0.00 0.00 2.69
123 124 1.497161 GCTAAGCCTACCCCTCTCAA 58.503 55.000 0.00 0.00 0.00 3.02
124 125 0.398664 GGCTAAGCCTACCCCTCTCA 60.399 60.000 0.00 0.00 46.69 3.27
125 126 2.443168 GGCTAAGCCTACCCCTCTC 58.557 63.158 0.00 0.00 46.69 3.20
126 127 4.730917 GGCTAAGCCTACCCCTCT 57.269 61.111 0.00 0.00 46.69 3.69
136 137 0.461693 CTCTCACAGCTGGGCTAAGC 60.462 60.000 19.93 4.80 43.88 3.09
137 138 0.461693 GCTCTCACAGCTGGGCTAAG 60.462 60.000 19.93 12.68 45.83 2.18
138 139 1.599047 GCTCTCACAGCTGGGCTAA 59.401 57.895 19.93 1.41 45.83 3.09
139 140 3.303189 GCTCTCACAGCTGGGCTA 58.697 61.111 19.93 4.15 45.83 3.93
146 147 2.433318 GTCCACCGCTCTCACAGC 60.433 66.667 0.00 0.00 45.85 4.40
147 148 2.126307 CGTCCACCGCTCTCACAG 60.126 66.667 0.00 0.00 0.00 3.66
148 149 3.680786 CCGTCCACCGCTCTCACA 61.681 66.667 0.00 0.00 34.38 3.58
149 150 4.436998 CCCGTCCACCGCTCTCAC 62.437 72.222 0.00 0.00 34.38 3.51
181 182 2.446435 TCATTTTAGGGCCTTCACAGC 58.554 47.619 13.45 0.00 0.00 4.40
182 183 4.619160 GCTTTCATTTTAGGGCCTTCACAG 60.619 45.833 13.45 0.00 0.00 3.66
183 184 3.258123 GCTTTCATTTTAGGGCCTTCACA 59.742 43.478 13.45 0.00 0.00 3.58
184 185 3.368427 GGCTTTCATTTTAGGGCCTTCAC 60.368 47.826 13.45 0.00 36.96 3.18
269 270 4.803426 CACTCCACTCGCGGCCTC 62.803 72.222 6.13 0.00 0.00 4.70
424 448 3.600410 AATTGGGGGCGAACCTGGG 62.600 63.158 0.00 0.00 40.03 4.45
425 449 2.037208 AATTGGGGGCGAACCTGG 59.963 61.111 0.00 0.00 40.03 4.45
426 450 1.000896 AGAATTGGGGGCGAACCTG 60.001 57.895 0.00 0.00 40.03 4.00
427 451 1.000896 CAGAATTGGGGGCGAACCT 60.001 57.895 0.00 0.00 40.03 3.50
428 452 0.610785 TTCAGAATTGGGGGCGAACC 60.611 55.000 0.00 0.00 39.11 3.62
429 453 1.067846 GTTTCAGAATTGGGGGCGAAC 60.068 52.381 0.00 0.00 0.00 3.95
430 454 1.253100 GTTTCAGAATTGGGGGCGAA 58.747 50.000 0.00 0.00 0.00 4.70
431 455 0.610785 GGTTTCAGAATTGGGGGCGA 60.611 55.000 0.00 0.00 0.00 5.54
432 456 0.611896 AGGTTTCAGAATTGGGGGCG 60.612 55.000 0.00 0.00 0.00 6.13
433 457 1.644509 AAGGTTTCAGAATTGGGGGC 58.355 50.000 0.00 0.00 0.00 5.80
434 458 6.373005 AATAAAAGGTTTCAGAATTGGGGG 57.627 37.500 0.00 0.00 0.00 5.40
435 459 8.593679 AGTAAATAAAAGGTTTCAGAATTGGGG 58.406 33.333 0.00 0.00 0.00 4.96
436 460 9.639601 GAGTAAATAAAAGGTTTCAGAATTGGG 57.360 33.333 0.00 0.00 0.00 4.12
437 461 9.639601 GGAGTAAATAAAAGGTTTCAGAATTGG 57.360 33.333 0.00 0.00 0.00 3.16
455 479 8.406297 GCTCCTTAATTCGAAATTGGAGTAAAT 58.594 33.333 25.98 0.00 40.99 1.40
468 492 3.662759 AATTGGGGCTCCTTAATTCGA 57.337 42.857 3.07 0.00 0.00 3.71
480 504 3.007831 TCATGTTTGAAGGAAATTGGGGC 59.992 43.478 0.00 0.00 0.00 5.80
491 515 5.556758 CGTGTTGCCATTTTCATGTTTGAAG 60.557 40.000 0.00 0.00 42.60 3.02
493 517 3.801050 CGTGTTGCCATTTTCATGTTTGA 59.199 39.130 0.00 0.00 0.00 2.69
497 525 1.605202 GCCGTGTTGCCATTTTCATGT 60.605 47.619 0.00 0.00 0.00 3.21
511 539 3.055094 AGTCATAGAATTCAAGGCCGTGT 60.055 43.478 18.61 0.00 0.00 4.49
514 542 3.797039 TCAGTCATAGAATTCAAGGCCG 58.203 45.455 8.44 0.00 0.00 6.13
515 543 5.371526 TCATCAGTCATAGAATTCAAGGCC 58.628 41.667 8.44 0.00 0.00 5.19
516 544 5.049543 GCTCATCAGTCATAGAATTCAAGGC 60.050 44.000 8.44 0.00 0.00 4.35
517 545 5.177142 CGCTCATCAGTCATAGAATTCAAGG 59.823 44.000 8.44 0.00 0.00 3.61
518 546 5.333187 GCGCTCATCAGTCATAGAATTCAAG 60.333 44.000 8.44 0.00 0.00 3.02
519 547 4.509230 GCGCTCATCAGTCATAGAATTCAA 59.491 41.667 8.44 0.00 0.00 2.69
520 548 4.053983 GCGCTCATCAGTCATAGAATTCA 58.946 43.478 8.44 0.00 0.00 2.57
521 549 3.431572 GGCGCTCATCAGTCATAGAATTC 59.568 47.826 7.64 0.00 0.00 2.17
551 597 5.654901 ATCATCAGGACAGGTCTCTAGTA 57.345 43.478 0.00 0.00 0.00 1.82
561 607 5.922053 TGATTTCCAGTATCATCAGGACAG 58.078 41.667 0.00 0.00 0.00 3.51
574 620 2.569404 GGACAGGTCTCTGATTTCCAGT 59.431 50.000 0.00 0.00 43.49 4.00
588 634 9.981114 CTATTTTAGTGAAAATTTTGGACAGGT 57.019 29.630 8.47 0.00 41.53 4.00
663 713 1.452108 GCAGGCAGGGGACATGTAC 60.452 63.158 0.00 0.00 0.00 2.90
664 714 1.922881 TGCAGGCAGGGGACATGTA 60.923 57.895 0.00 0.00 0.00 2.29
665 715 3.259314 TGCAGGCAGGGGACATGT 61.259 61.111 0.00 0.00 0.00 3.21
666 716 2.753043 GTGCAGGCAGGGGACATG 60.753 66.667 0.00 0.00 0.00 3.21
667 717 2.937689 AGTGCAGGCAGGGGACAT 60.938 61.111 0.00 0.00 0.00 3.06
668 718 2.746947 TAGAGTGCAGGCAGGGGACA 62.747 60.000 0.00 0.00 0.00 4.02
669 719 1.553690 TTAGAGTGCAGGCAGGGGAC 61.554 60.000 0.00 0.00 0.00 4.46
670 720 0.840288 TTTAGAGTGCAGGCAGGGGA 60.840 55.000 0.00 0.00 0.00 4.81
671 721 0.257039 ATTTAGAGTGCAGGCAGGGG 59.743 55.000 0.00 0.00 0.00 4.79
672 722 2.134789 AATTTAGAGTGCAGGCAGGG 57.865 50.000 0.00 0.00 0.00 4.45
673 723 4.514441 CAGATAATTTAGAGTGCAGGCAGG 59.486 45.833 0.00 0.00 0.00 4.85
674 724 4.024218 GCAGATAATTTAGAGTGCAGGCAG 60.024 45.833 0.00 0.00 0.00 4.85
675 725 3.879295 GCAGATAATTTAGAGTGCAGGCA 59.121 43.478 0.00 0.00 0.00 4.75
676 726 3.251972 GGCAGATAATTTAGAGTGCAGGC 59.748 47.826 0.00 0.00 32.42 4.85
677 727 4.712476 AGGCAGATAATTTAGAGTGCAGG 58.288 43.478 0.00 0.00 32.42 4.85
678 728 5.363101 TGAGGCAGATAATTTAGAGTGCAG 58.637 41.667 0.00 0.00 32.42 4.41
679 729 5.357742 TGAGGCAGATAATTTAGAGTGCA 57.642 39.130 8.73 0.00 32.42 4.57
703 753 4.250464 TCCAGTTTATTCAGTGCCGTAAG 58.750 43.478 0.00 0.00 0.00 2.34
704 754 4.274602 TCCAGTTTATTCAGTGCCGTAA 57.725 40.909 0.00 0.00 0.00 3.18
705 755 3.965379 TCCAGTTTATTCAGTGCCGTA 57.035 42.857 0.00 0.00 0.00 4.02
706 756 2.812011 GTTCCAGTTTATTCAGTGCCGT 59.188 45.455 0.00 0.00 0.00 5.68
707 757 3.074412 AGTTCCAGTTTATTCAGTGCCG 58.926 45.455 0.00 0.00 0.00 5.69
708 758 4.072131 TCAGTTCCAGTTTATTCAGTGCC 58.928 43.478 0.00 0.00 0.00 5.01
709 759 5.689383 TTCAGTTCCAGTTTATTCAGTGC 57.311 39.130 0.00 0.00 0.00 4.40
710 760 7.264373 ACTTTCAGTTCCAGTTTATTCAGTG 57.736 36.000 0.00 0.00 0.00 3.66
711 761 8.211629 ACTACTTTCAGTTCCAGTTTATTCAGT 58.788 33.333 0.00 0.00 0.00 3.41
712 762 8.608844 ACTACTTTCAGTTCCAGTTTATTCAG 57.391 34.615 0.00 0.00 0.00 3.02
713 763 8.974060 AACTACTTTCAGTTCCAGTTTATTCA 57.026 30.769 0.00 0.00 33.41 2.57
769 819 5.809001 ACATGGCAAACAAGAATCTCTCTA 58.191 37.500 0.00 0.00 32.46 2.43
812 879 2.855180 CTGAAACTATTTGCGCACCAG 58.145 47.619 11.12 10.28 0.00 4.00
841 908 9.967346 GAAAGCTAAACCTTTCTTTATGAACTT 57.033 29.630 7.25 0.00 44.51 2.66
842 909 9.131791 TGAAAGCTAAACCTTTCTTTATGAACT 57.868 29.630 13.72 0.00 46.78 3.01
843 910 9.914131 ATGAAAGCTAAACCTTTCTTTATGAAC 57.086 29.630 13.72 0.00 46.78 3.18
845 912 9.295825 TGATGAAAGCTAAACCTTTCTTTATGA 57.704 29.630 13.72 0.00 46.78 2.15
878 945 6.692849 AGCCCAATCAATCATATCTCTGTA 57.307 37.500 0.00 0.00 0.00 2.74
882 949 6.705302 TCTGTAGCCCAATCAATCATATCTC 58.295 40.000 0.00 0.00 0.00 2.75
884 951 7.574592 GCTTTCTGTAGCCCAATCAATCATATC 60.575 40.741 0.00 0.00 35.06 1.63
912 979 5.883673 TGGGGTATTTGAAAAGGATTAGTCG 59.116 40.000 0.00 0.00 0.00 4.18
916 983 7.396055 CAGAGTTGGGGTATTTGAAAAGGATTA 59.604 37.037 0.00 0.00 0.00 1.75
976 1050 1.604278 GAACCTGCCAGTTCACTGAAC 59.396 52.381 13.25 13.25 46.59 3.18
1032 1113 2.047844 GAGCTCTGCTTGTCGCCA 60.048 61.111 6.43 0.00 39.88 5.69
1121 1216 0.394938 TAACTCCTCTTTGGTGCGCA 59.605 50.000 5.66 5.66 37.07 6.09
1159 1254 0.591170 ATTGTGAAAAGACCGGTGCG 59.409 50.000 14.63 0.00 0.00 5.34
1251 1356 6.173339 GTCATCAAAGAGAAGGGTAACATCA 58.827 40.000 0.00 0.00 39.74 3.07
1284 1401 1.418264 TCCACAACCATGTCGAAAGGA 59.582 47.619 6.10 0.00 37.82 3.36
1352 1472 9.554395 TCTTTCTAACTTGACAAATGTACATCA 57.446 29.630 9.23 0.22 0.00 3.07
1370 1490 3.646162 TGAGAAGGTGCTGGTCTTTCTAA 59.354 43.478 0.00 0.00 0.00 2.10
1374 1497 2.856222 CTTGAGAAGGTGCTGGTCTTT 58.144 47.619 0.00 0.00 0.00 2.52
1381 1504 0.888285 GCACTGCTTGAGAAGGTGCT 60.888 55.000 8.79 0.00 46.39 4.40
1392 1515 1.180029 CCCAGCAAATAGCACTGCTT 58.820 50.000 9.30 0.00 46.71 3.91
1414 1537 3.054728 TCCCTTCTCACAAACTTGTCACA 60.055 43.478 0.00 0.00 39.91 3.58
1434 1557 2.278661 GATCGTTCGAGGGCGTCC 60.279 66.667 0.00 0.00 38.98 4.79
1584 1752 1.200252 CTGACCTCGAATGTCACGTCT 59.800 52.381 12.13 0.00 37.80 4.18
1587 1755 1.406219 CGCTGACCTCGAATGTCACG 61.406 60.000 12.13 14.98 37.80 4.35
1641 1809 1.276622 TGAAGACCTTAGACCTGGCC 58.723 55.000 0.00 0.00 0.00 5.36
1701 1881 6.888105 TGCTTCCATGTCTTTGATCTGTATA 58.112 36.000 0.00 0.00 0.00 1.47
1727 1907 1.455383 AAGCAAAGCCCTGAACACCG 61.455 55.000 0.00 0.00 0.00 4.94
1773 1963 4.973856 TCCATGATTTCCTCCTCTCTCAAT 59.026 41.667 0.00 0.00 0.00 2.57
1788 1993 5.103813 TGACATTTCATCCTCCTCCATGATT 60.104 40.000 0.00 0.00 0.00 2.57
1839 2071 3.056393 TCATTTCATCCTTTGCTGGCTTG 60.056 43.478 0.00 0.00 0.00 4.01
1840 2072 3.056322 GTCATTTCATCCTTTGCTGGCTT 60.056 43.478 0.00 0.00 0.00 4.35
1841 2073 2.494870 GTCATTTCATCCTTTGCTGGCT 59.505 45.455 0.00 0.00 0.00 4.75
1843 2075 3.508793 AGTGTCATTTCATCCTTTGCTGG 59.491 43.478 0.00 0.00 0.00 4.85
1849 2081 6.832384 AGATATTGCAGTGTCATTTCATCCTT 59.168 34.615 8.62 0.00 0.00 3.36
1871 2103 3.132925 GCCACAAACATGTTTTGCAGAT 58.867 40.909 21.10 0.00 32.93 2.90
1882 2114 0.956633 CTGTCTGCTGCCACAAACAT 59.043 50.000 0.00 0.00 0.00 2.71
1904 2136 2.009424 CTTGAGCCGCTGGAGATCGA 62.009 60.000 0.00 0.00 0.00 3.59
1976 2208 0.814457 CTCGGCTAGAGCAAGAGTGT 59.186 55.000 14.43 0.00 44.36 3.55
2004 2236 0.554792 CCTCCTTCAATCCCTGGCAT 59.445 55.000 0.00 0.00 0.00 4.40
2040 2272 2.671682 GAGGGGGACTGGACTTGC 59.328 66.667 0.00 0.00 0.00 4.01
2088 2320 3.118738 AGGTCGAAACTACATGATCCCAC 60.119 47.826 0.00 0.00 0.00 4.61
2176 2473 7.093992 GTCTAAGGAAGATGCATACCAGATAC 58.906 42.308 15.98 7.74 36.36 2.24
2290 2611 5.415701 GGATTTTTCTGGTTCAGCATACAGA 59.584 40.000 0.00 0.00 38.12 3.41
2339 2666 4.839121 TGTACATACAGACCACCCATTTC 58.161 43.478 0.00 0.00 0.00 2.17
2407 2823 5.824904 ACGAGGATTAAACGACTAGCTAA 57.175 39.130 0.00 0.00 0.00 3.09
2428 2844 9.319143 AGACAACTAATGCACAGAGAAATATAC 57.681 33.333 4.22 0.00 0.00 1.47
2537 2976 8.739972 ACAGGTTCATAAAATGTCTTTCCATAC 58.260 33.333 0.00 0.00 0.00 2.39
2539 2978 7.781324 ACAGGTTCATAAAATGTCTTTCCAT 57.219 32.000 0.00 0.00 0.00 3.41
2547 2986 9.762381 TCCCTAAAATACAGGTTCATAAAATGT 57.238 29.630 0.00 0.00 0.00 2.71
2569 3008 4.911390 CTTGTCTACCAAGTTCATTCCCT 58.089 43.478 0.00 0.00 44.64 4.20
2598 3040 4.298103 AGACAACAAGAATCCTGATGCT 57.702 40.909 0.00 0.00 0.00 3.79
2599 3042 4.456911 TCAAGACAACAAGAATCCTGATGC 59.543 41.667 0.00 0.00 0.00 3.91
2696 3368 4.992319 ACAAAATGACAGCAATCAACCATG 59.008 37.500 0.00 0.00 30.82 3.66
2718 3390 0.960364 TCCCCAGCTTTTCATCGCAC 60.960 55.000 0.00 0.00 0.00 5.34
2742 3415 4.771590 AATCGACAACAATGTGCTCAAT 57.228 36.364 0.00 0.00 40.74 2.57
2783 4330 4.596643 AGATAAGAGATTCACATCCCCTGG 59.403 45.833 0.00 0.00 0.00 4.45
2792 4339 7.081526 ACATGCAAACAGATAAGAGATTCAC 57.918 36.000 0.00 0.00 0.00 3.18
2795 4342 7.392673 ACAGAACATGCAAACAGATAAGAGATT 59.607 33.333 0.00 0.00 0.00 2.40
2864 4423 8.120465 CACAAAGACTAACAAAAAGATGTACGT 58.880 33.333 0.00 0.00 32.02 3.57
2865 4424 8.120465 ACACAAAGACTAACAAAAAGATGTACG 58.880 33.333 0.00 0.00 32.02 3.67
2867 4426 9.781834 CAACACAAAGACTAACAAAAAGATGTA 57.218 29.630 0.00 0.00 32.02 2.29
2880 4439 4.502604 GGGTGAGTAGCAACACAAAGACTA 60.503 45.833 0.00 0.00 38.57 2.59
2965 4540 1.251251 GAAGGCTCAAGGTGCAACAT 58.749 50.000 3.64 0.00 39.98 2.71
2966 4541 0.106769 TGAAGGCTCAAGGTGCAACA 60.107 50.000 3.64 0.00 39.98 3.33
2967 4542 1.200948 GATGAAGGCTCAAGGTGCAAC 59.799 52.381 0.00 0.00 34.49 4.17
2968 4543 1.202915 TGATGAAGGCTCAAGGTGCAA 60.203 47.619 0.00 0.00 34.49 4.08
2969 4544 0.401356 TGATGAAGGCTCAAGGTGCA 59.599 50.000 0.00 0.00 34.49 4.57
2970 4545 1.471684 CTTGATGAAGGCTCAAGGTGC 59.528 52.381 6.37 0.00 43.76 5.01
2975 4550 3.405831 CTCACACTTGATGAAGGCTCAA 58.594 45.455 0.00 0.00 34.49 3.02
2977 4552 2.354259 CCTCACACTTGATGAAGGCTC 58.646 52.381 0.00 0.00 32.95 4.70
2978 4553 1.004044 CCCTCACACTTGATGAAGGCT 59.996 52.381 0.00 0.00 35.00 4.58
2979 4554 1.271597 ACCCTCACACTTGATGAAGGC 60.272 52.381 0.00 0.00 35.00 4.35
2980 4555 2.430465 CACCCTCACACTTGATGAAGG 58.570 52.381 0.00 0.00 34.35 3.46
2982 4557 1.073763 CCCACCCTCACACTTGATGAA 59.926 52.381 0.00 0.00 0.00 2.57
2983 4558 0.692476 CCCACCCTCACACTTGATGA 59.308 55.000 0.00 0.00 0.00 2.92
2984 4559 0.962356 GCCCACCCTCACACTTGATG 60.962 60.000 0.00 0.00 0.00 3.07
2985 4560 1.380302 GCCCACCCTCACACTTGAT 59.620 57.895 0.00 0.00 0.00 2.57
2986 4561 1.426251 ATGCCCACCCTCACACTTGA 61.426 55.000 0.00 0.00 0.00 3.02
2987 4562 1.075482 ATGCCCACCCTCACACTTG 59.925 57.895 0.00 0.00 0.00 3.16
2988 4563 1.075482 CATGCCCACCCTCACACTT 59.925 57.895 0.00 0.00 0.00 3.16
2989 4564 1.210204 ATCATGCCCACCCTCACACT 61.210 55.000 0.00 0.00 0.00 3.55
2990 4565 0.323725 AATCATGCCCACCCTCACAC 60.324 55.000 0.00 0.00 0.00 3.82
2991 4566 1.294041 TAATCATGCCCACCCTCACA 58.706 50.000 0.00 0.00 0.00 3.58
2992 4567 2.664402 ATAATCATGCCCACCCTCAC 57.336 50.000 0.00 0.00 0.00 3.51
2994 4569 5.574188 AGAATAATAATCATGCCCACCCTC 58.426 41.667 0.00 0.00 0.00 4.30
2995 4570 5.574188 GAGAATAATAATCATGCCCACCCT 58.426 41.667 0.00 0.00 0.00 4.34
2996 4571 4.396166 CGAGAATAATAATCATGCCCACCC 59.604 45.833 0.00 0.00 0.00 4.61
2997 4572 5.245531 TCGAGAATAATAATCATGCCCACC 58.754 41.667 0.00 0.00 0.00 4.61
2998 4573 6.166279 TCTCGAGAATAATAATCATGCCCAC 58.834 40.000 14.01 0.00 0.00 4.61
2999 4574 6.358974 TCTCGAGAATAATAATCATGCCCA 57.641 37.500 14.01 0.00 0.00 5.36
3000 4575 7.856145 AATCTCGAGAATAATAATCATGCCC 57.144 36.000 20.91 0.00 0.00 5.36
3001 4576 9.809096 TCTAATCTCGAGAATAATAATCATGCC 57.191 33.333 20.91 0.00 0.00 4.40
3014 4589 6.975197 CACAAGCAGTAATCTAATCTCGAGAA 59.025 38.462 20.91 2.56 0.00 2.87
3019 4594 5.988561 CCCTCACAAGCAGTAATCTAATCTC 59.011 44.000 0.00 0.00 0.00 2.75
3023 4598 4.286032 ACACCCTCACAAGCAGTAATCTAA 59.714 41.667 0.00 0.00 0.00 2.10
3027 4602 2.639839 AGACACCCTCACAAGCAGTAAT 59.360 45.455 0.00 0.00 0.00 1.89
3028 4603 2.037251 GAGACACCCTCACAAGCAGTAA 59.963 50.000 0.00 0.00 41.58 2.24
3031 4606 0.321122 GGAGACACCCTCACAAGCAG 60.321 60.000 0.00 0.00 43.76 4.24
3041 4616 1.324005 AAGCTAGCTCGGAGACACCC 61.324 60.000 19.65 0.00 34.64 4.61
3043 4618 0.528470 ACAAGCTAGCTCGGAGACAC 59.472 55.000 19.65 0.00 0.00 3.67
3050 4625 3.119291 CCAGTATCAACAAGCTAGCTCG 58.881 50.000 19.65 10.01 0.00 5.03
3054 4629 6.483640 GGGTAATTCCAGTATCAACAAGCTAG 59.516 42.308 0.00 0.00 38.11 3.42
3057 4632 4.947388 TGGGTAATTCCAGTATCAACAAGC 59.053 41.667 0.00 0.00 38.11 4.01
3070 4743 6.243216 TCACCTATACAACTGGGTAATTCC 57.757 41.667 0.00 0.00 0.00 3.01
3071 4744 7.562135 TCTTCACCTATACAACTGGGTAATTC 58.438 38.462 0.00 0.00 0.00 2.17
3073 4746 7.420214 CCATCTTCACCTATACAACTGGGTAAT 60.420 40.741 0.00 0.00 0.00 1.89
3074 4747 6.126883 CCATCTTCACCTATACAACTGGGTAA 60.127 42.308 0.00 0.00 0.00 2.85
3075 4748 5.365605 CCATCTTCACCTATACAACTGGGTA 59.634 44.000 0.00 0.00 0.00 3.69
3076 4749 4.164221 CCATCTTCACCTATACAACTGGGT 59.836 45.833 0.00 0.00 0.00 4.51
3077 4750 4.164221 ACCATCTTCACCTATACAACTGGG 59.836 45.833 0.00 0.00 0.00 4.45
3079 4752 5.977635 TCACCATCTTCACCTATACAACTG 58.022 41.667 0.00 0.00 0.00 3.16
3080 4753 6.384015 TCATCACCATCTTCACCTATACAACT 59.616 38.462 0.00 0.00 0.00 3.16
3082 4755 6.806668 TCATCACCATCTTCACCTATACAA 57.193 37.500 0.00 0.00 0.00 2.41
3097 4800 7.576403 TCCAAGAATTCTGATTATCATCACCA 58.424 34.615 9.17 0.00 34.22 4.17
3098 4801 7.308469 GCTCCAAGAATTCTGATTATCATCACC 60.308 40.741 9.17 0.00 34.22 4.02
3100 4803 7.444487 CAGCTCCAAGAATTCTGATTATCATCA 59.556 37.037 9.17 0.00 37.05 3.07
3101 4804 7.573469 GCAGCTCCAAGAATTCTGATTATCATC 60.573 40.741 9.17 0.00 0.00 2.92
3102 4805 6.207025 GCAGCTCCAAGAATTCTGATTATCAT 59.793 38.462 9.17 0.00 0.00 2.45
3103 4806 5.530171 GCAGCTCCAAGAATTCTGATTATCA 59.470 40.000 9.17 0.00 0.00 2.15
3104 4807 5.048852 GGCAGCTCCAAGAATTCTGATTATC 60.049 44.000 9.17 0.00 34.01 1.75
3105 4808 4.826183 GGCAGCTCCAAGAATTCTGATTAT 59.174 41.667 9.17 0.00 34.01 1.28
3106 4809 4.080129 AGGCAGCTCCAAGAATTCTGATTA 60.080 41.667 9.17 0.00 37.29 1.75
3107 4810 3.022406 GGCAGCTCCAAGAATTCTGATT 58.978 45.455 9.17 0.00 34.01 2.57
3108 4811 2.241685 AGGCAGCTCCAAGAATTCTGAT 59.758 45.455 9.17 0.00 37.29 2.90
3109 4812 1.632409 AGGCAGCTCCAAGAATTCTGA 59.368 47.619 9.17 1.88 37.29 3.27
3111 4814 1.954258 GCAGGCAGCTCCAAGAATTCT 60.954 52.381 0.88 0.88 41.15 2.40
3112 4815 0.455005 GCAGGCAGCTCCAAGAATTC 59.545 55.000 0.00 0.00 41.15 2.17
3131 4990 5.539979 TCCTACACTAGCACGAGTAGATAG 58.460 45.833 10.07 0.00 36.86 2.08
3134 4993 3.900966 TCCTACACTAGCACGAGTAGA 57.099 47.619 10.07 0.00 36.86 2.59
3135 4994 5.502153 AATTCCTACACTAGCACGAGTAG 57.498 43.478 0.00 0.00 35.03 2.57
3136 4995 5.909621 AAATTCCTACACTAGCACGAGTA 57.090 39.130 0.00 0.00 0.00 2.59
3137 4996 4.803098 AAATTCCTACACTAGCACGAGT 57.197 40.909 0.00 0.00 0.00 4.18
3141 5000 7.617041 AGATTCAAAATTCCTACACTAGCAC 57.383 36.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.