Multiple sequence alignment - TraesCS6B01G466700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G466700 chr6B 100.000 7850 0 0 1 7850 716629625 716621776 0.000000e+00 14497.0
1 TraesCS6B01G466700 chr6D 91.437 2756 167 33 4339 7062 471924721 471922003 0.000000e+00 3718.0
2 TraesCS6B01G466700 chr6D 90.699 1989 98 35 2392 4347 471927094 471925160 0.000000e+00 2567.0
3 TraesCS6B01G466700 chr6D 84.699 1013 100 33 1378 2361 471928074 471927088 0.000000e+00 961.0
4 TraesCS6B01G466700 chr6D 90.135 669 36 9 7205 7848 471921998 471921335 0.000000e+00 843.0
5 TraesCS6B01G466700 chr6D 86.719 128 9 8 1249 1371 471928259 471928135 1.370000e-27 135.0
6 TraesCS6B01G466700 chr6D 80.864 162 13 7 897 1045 471928515 471928359 2.320000e-20 111.0
7 TraesCS6B01G466700 chr6D 86.170 94 4 3 794 886 471928757 471928672 8.390000e-15 93.5
8 TraesCS6B01G466700 chr4A 91.908 2595 139 23 4329 6908 741567614 741565076 0.000000e+00 3563.0
9 TraesCS6B01G466700 chr4A 94.003 617 33 4 3127 3741 741568217 741567603 0.000000e+00 931.0
10 TraesCS6B01G466700 chr4A 87.973 582 39 13 7267 7848 741549768 741549218 0.000000e+00 658.0
11 TraesCS6B01G466700 chr4A 93.868 212 6 3 2921 3131 741573621 741573416 5.910000e-81 313.0
12 TraesCS6B01G466700 chr4A 89.172 157 15 2 6907 7062 741549944 741549789 2.240000e-45 195.0
13 TraesCS6B01G466700 chrUn 89.991 2328 171 38 4867 7177 74814874 74817156 0.000000e+00 2952.0
14 TraesCS6B01G466700 chrUn 91.848 1975 115 26 1601 3558 74811537 74813482 0.000000e+00 2713.0
15 TraesCS6B01G466700 chrUn 91.220 1344 55 26 3556 4863 74813523 74814839 0.000000e+00 1770.0
16 TraesCS6B01G466700 chrUn 88.520 662 36 14 7225 7848 74817247 74817906 0.000000e+00 765.0
17 TraesCS6B01G466700 chrUn 96.237 372 14 0 1 372 414802841 414803212 1.870000e-170 610.0
18 TraesCS6B01G466700 chrUn 96.237 372 14 0 1 372 472737131 472737502 1.870000e-170 610.0
19 TraesCS6B01G466700 chrUn 97.101 207 6 0 381 587 337091309 337091515 4.510000e-92 350.0
20 TraesCS6B01G466700 chrUn 97.436 195 5 0 393 587 475845924 475845730 4.540000e-87 333.0
21 TraesCS6B01G466700 chrUn 89.773 88 3 1 1000 1087 74810999 74811080 3.000000e-19 108.0
22 TraesCS6B01G466700 chr7B 98.139 591 11 0 1 591 640462882 640462292 0.000000e+00 1031.0
23 TraesCS6B01G466700 chr7B 91.987 599 47 1 1 598 568008897 568008299 0.000000e+00 839.0
24 TraesCS6B01G466700 chr2B 93.537 588 36 2 1 587 611310231 611310817 0.000000e+00 874.0
25 TraesCS6B01G466700 chr2B 77.885 104 21 2 6317 6419 172678668 172678770 6.580000e-06 63.9
26 TraesCS6B01G466700 chr4B 87.925 588 70 1 1 587 106960006 106959419 0.000000e+00 691.0
27 TraesCS6B01G466700 chr4B 86.993 592 66 8 1 591 139390216 139390797 0.000000e+00 656.0
28 TraesCS6B01G466700 chr5B 83.192 589 92 7 1 585 464349539 464350124 4.170000e-147 532.0
29 TraesCS6B01G466700 chr3B 82.833 600 89 13 1 592 680309569 680308976 6.980000e-145 525.0
30 TraesCS6B01G466700 chr1D 80.344 697 72 37 4960 5643 482912798 482913442 1.190000e-127 468.0
31 TraesCS6B01G466700 chr1A 80.143 559 84 18 1701 2245 425075130 425074585 7.380000e-105 392.0
32 TraesCS6B01G466700 chr1A 79.643 560 84 21 1701 2245 406653312 406653856 7.440000e-100 375.0
33 TraesCS6B01G466700 chr1A 82.112 464 55 18 5189 5643 579220334 579219890 9.620000e-99 372.0
34 TraesCS6B01G466700 chr1B 82.479 468 55 17 5189 5651 671243595 671244040 1.240000e-102 385.0
35 TraesCS6B01G466700 chr5D 77.778 567 109 15 1 557 444077446 444078005 4.540000e-87 333.0
36 TraesCS6B01G466700 chr4D 82.390 318 40 6 2598 2906 223215808 223216118 6.040000e-66 263.0
37 TraesCS6B01G466700 chr5A 83.019 159 21 5 1386 1541 680360286 680360131 1.060000e-28 139.0
38 TraesCS6B01G466700 chr7D 87.719 114 14 0 6305 6418 635844811 635844698 4.940000e-27 134.0
39 TraesCS6B01G466700 chr7D 83.846 130 19 2 6305 6433 635677355 635677227 1.070000e-23 122.0
40 TraesCS6B01G466700 chr7D 84.677 124 17 2 6297 6418 636330421 636330544 1.070000e-23 122.0
41 TraesCS6B01G466700 chr7A 89.744 78 8 0 6151 6228 18877691 18877614 5.010000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G466700 chr6B 716621776 716629625 7849 True 14497.000000 14497 100.000000 1 7850 1 chr6B.!!$R1 7849
1 TraesCS6B01G466700 chr6D 471921335 471928757 7422 True 1204.071429 3718 87.246143 794 7848 7 chr6D.!!$R1 7054
2 TraesCS6B01G466700 chr4A 741565076 741568217 3141 True 2247.000000 3563 92.955500 3127 6908 2 chr4A.!!$R3 3781
3 TraesCS6B01G466700 chr4A 741549218 741549944 726 True 426.500000 658 88.572500 6907 7848 2 chr4A.!!$R2 941
4 TraesCS6B01G466700 chrUn 74810999 74817906 6907 False 1661.600000 2952 90.270400 1000 7848 5 chrUn.!!$F4 6848
5 TraesCS6B01G466700 chr7B 640462292 640462882 590 True 1031.000000 1031 98.139000 1 591 1 chr7B.!!$R2 590
6 TraesCS6B01G466700 chr7B 568008299 568008897 598 True 839.000000 839 91.987000 1 598 1 chr7B.!!$R1 597
7 TraesCS6B01G466700 chr2B 611310231 611310817 586 False 874.000000 874 93.537000 1 587 1 chr2B.!!$F2 586
8 TraesCS6B01G466700 chr4B 106959419 106960006 587 True 691.000000 691 87.925000 1 587 1 chr4B.!!$R1 586
9 TraesCS6B01G466700 chr4B 139390216 139390797 581 False 656.000000 656 86.993000 1 591 1 chr4B.!!$F1 590
10 TraesCS6B01G466700 chr5B 464349539 464350124 585 False 532.000000 532 83.192000 1 585 1 chr5B.!!$F1 584
11 TraesCS6B01G466700 chr3B 680308976 680309569 593 True 525.000000 525 82.833000 1 592 1 chr3B.!!$R1 591
12 TraesCS6B01G466700 chr1D 482912798 482913442 644 False 468.000000 468 80.344000 4960 5643 1 chr1D.!!$F1 683
13 TraesCS6B01G466700 chr1A 425074585 425075130 545 True 392.000000 392 80.143000 1701 2245 1 chr1A.!!$R1 544
14 TraesCS6B01G466700 chr1A 406653312 406653856 544 False 375.000000 375 79.643000 1701 2245 1 chr1A.!!$F1 544
15 TraesCS6B01G466700 chr5D 444077446 444078005 559 False 333.000000 333 77.778000 1 557 1 chr5D.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 796 0.104672 TCCTCTTTCTCCCACCACCA 60.105 55.000 0.0 0.0 0.00 4.17 F
1522 1738 0.038166 CCACCACTACCATGTGCCTT 59.962 55.000 0.0 0.0 36.68 4.35 F
3016 3299 0.317160 GGTAAGCCAAGTGCCCAAAC 59.683 55.000 0.0 0.0 42.71 2.93 F
4471 5272 0.874390 TTGCTCGTGATTTCTGCCAC 59.126 50.000 0.0 0.0 0.00 5.01 F
5231 6087 1.273781 TGTGACCCATCCTCATCCTGA 60.274 52.381 0.0 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 1840 0.108615 CGGAGTGATCGAAACCTGCT 60.109 55.000 0.00 0.00 0.00 4.24 R
3058 3341 1.068588 CTCAACTCCGGTCAGAACACA 59.931 52.381 0.00 0.00 0.00 3.72 R
4907 5754 0.382158 CGCGCTTCAGATCACCTAGA 59.618 55.000 5.56 0.00 0.00 2.43 R
5679 6569 0.464373 ACAGCACAAGACCTGGTGTG 60.464 55.000 2.82 7.88 46.09 3.82 R
6890 7814 0.038166 ACAATGACAAGGGGCGACAT 59.962 50.000 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.422803 CCGAACAGAGATCTCTCCTCCT 60.423 54.545 22.69 5.36 43.88 3.69
82 83 2.222289 CGTACATCTCGCGTTTGTTCAG 60.222 50.000 5.77 0.00 0.00 3.02
254 257 0.105964 TGTGGAAACGTCTGACCTGG 59.894 55.000 1.55 0.00 0.00 4.45
591 598 1.225475 CGCAGCGTGTCGAAACATC 60.225 57.895 6.65 0.00 37.81 3.06
595 602 0.670546 AGCGTGTCGAAACATCTGGG 60.671 55.000 6.53 0.00 37.81 4.45
598 605 1.067846 CGTGTCGAAACATCTGGGAGA 60.068 52.381 6.53 0.00 37.81 3.71
599 606 2.417379 CGTGTCGAAACATCTGGGAGAT 60.417 50.000 6.53 0.00 37.81 2.75
600 607 3.181490 CGTGTCGAAACATCTGGGAGATA 60.181 47.826 6.53 0.00 37.81 1.98
601 608 4.363999 GTGTCGAAACATCTGGGAGATAG 58.636 47.826 0.00 0.00 37.81 2.08
602 609 4.023980 TGTCGAAACATCTGGGAGATAGT 58.976 43.478 0.00 0.00 32.12 2.12
603 610 4.098044 TGTCGAAACATCTGGGAGATAGTC 59.902 45.833 0.00 0.00 32.12 2.59
604 611 4.339814 GTCGAAACATCTGGGAGATAGTCT 59.660 45.833 0.00 0.00 32.12 3.24
605 612 5.531659 GTCGAAACATCTGGGAGATAGTCTA 59.468 44.000 0.00 0.00 32.12 2.59
606 613 5.765677 TCGAAACATCTGGGAGATAGTCTAG 59.234 44.000 0.00 0.00 32.12 2.43
607 614 5.533154 CGAAACATCTGGGAGATAGTCTAGT 59.467 44.000 0.00 0.00 32.12 2.57
608 615 6.514212 CGAAACATCTGGGAGATAGTCTAGTG 60.514 46.154 0.00 0.00 32.12 2.74
609 616 5.396057 ACATCTGGGAGATAGTCTAGTGT 57.604 43.478 0.00 0.00 32.12 3.55
610 617 5.136828 ACATCTGGGAGATAGTCTAGTGTG 58.863 45.833 0.00 0.00 32.12 3.82
611 618 4.171878 TCTGGGAGATAGTCTAGTGTGG 57.828 50.000 0.00 0.00 0.00 4.17
612 619 3.117474 TCTGGGAGATAGTCTAGTGTGGG 60.117 52.174 0.00 0.00 0.00 4.61
613 620 2.856864 TGGGAGATAGTCTAGTGTGGGA 59.143 50.000 0.00 0.00 0.00 4.37
614 621 3.271225 TGGGAGATAGTCTAGTGTGGGAA 59.729 47.826 0.00 0.00 0.00 3.97
615 622 4.078571 TGGGAGATAGTCTAGTGTGGGAAT 60.079 45.833 0.00 0.00 0.00 3.01
616 623 4.282195 GGGAGATAGTCTAGTGTGGGAATG 59.718 50.000 0.00 0.00 0.00 2.67
617 624 4.282195 GGAGATAGTCTAGTGTGGGAATGG 59.718 50.000 0.00 0.00 0.00 3.16
618 625 5.141182 GAGATAGTCTAGTGTGGGAATGGA 58.859 45.833 0.00 0.00 0.00 3.41
619 626 5.721225 AGATAGTCTAGTGTGGGAATGGAT 58.279 41.667 0.00 0.00 0.00 3.41
620 627 6.864421 AGATAGTCTAGTGTGGGAATGGATA 58.136 40.000 0.00 0.00 0.00 2.59
621 628 7.483018 AGATAGTCTAGTGTGGGAATGGATAT 58.517 38.462 0.00 0.00 0.00 1.63
622 629 5.815233 AGTCTAGTGTGGGAATGGATATG 57.185 43.478 0.00 0.00 0.00 1.78
623 630 4.594920 AGTCTAGTGTGGGAATGGATATGG 59.405 45.833 0.00 0.00 0.00 2.74
624 631 4.593206 GTCTAGTGTGGGAATGGATATGGA 59.407 45.833 0.00 0.00 0.00 3.41
625 632 5.249393 GTCTAGTGTGGGAATGGATATGGAT 59.751 44.000 0.00 0.00 0.00 3.41
626 633 4.377762 AGTGTGGGAATGGATATGGATG 57.622 45.455 0.00 0.00 0.00 3.51
627 634 2.821969 GTGTGGGAATGGATATGGATGC 59.178 50.000 0.00 0.00 0.00 3.91
628 635 2.225091 TGTGGGAATGGATATGGATGCC 60.225 50.000 0.00 0.00 0.00 4.40
629 636 2.072172 TGGGAATGGATATGGATGCCA 58.928 47.619 0.00 0.00 38.19 4.92
630 637 2.042026 TGGGAATGGATATGGATGCCAG 59.958 50.000 0.00 0.00 36.75 4.85
631 638 2.622452 GGGAATGGATATGGATGCCAGG 60.622 54.545 0.00 0.00 36.75 4.45
632 639 2.097825 GAATGGATATGGATGCCAGGC 58.902 52.381 3.66 3.66 36.75 4.85
633 640 1.379776 ATGGATATGGATGCCAGGCT 58.620 50.000 14.15 0.00 36.75 4.58
634 641 0.402887 TGGATATGGATGCCAGGCTG 59.597 55.000 14.15 7.75 36.75 4.85
635 642 0.323178 GGATATGGATGCCAGGCTGG 60.323 60.000 29.44 29.44 41.55 4.85
636 643 0.694771 GATATGGATGCCAGGCTGGA 59.305 55.000 37.07 21.45 40.96 3.86
637 644 0.697079 ATATGGATGCCAGGCTGGAG 59.303 55.000 37.07 12.28 40.96 3.86
638 645 2.060567 TATGGATGCCAGGCTGGAGC 62.061 60.000 37.07 22.23 40.96 4.70
640 647 4.166888 GATGCCAGGCTGGAGCGA 62.167 66.667 37.07 16.80 40.96 4.93
641 648 4.172512 ATGCCAGGCTGGAGCGAG 62.173 66.667 37.07 9.87 40.96 5.03
645 652 3.393970 CAGGCTGGAGCGAGGGAA 61.394 66.667 6.61 0.00 43.26 3.97
646 653 2.366167 AGGCTGGAGCGAGGGAAT 60.366 61.111 0.00 0.00 43.26 3.01
647 654 2.203126 GGCTGGAGCGAGGGAATG 60.203 66.667 0.00 0.00 43.26 2.67
648 655 2.203126 GCTGGAGCGAGGGAATGG 60.203 66.667 0.00 0.00 0.00 3.16
649 656 3.036429 GCTGGAGCGAGGGAATGGT 62.036 63.158 0.00 0.00 0.00 3.55
650 657 1.153289 CTGGAGCGAGGGAATGGTG 60.153 63.158 0.00 0.00 0.00 4.17
651 658 2.190578 GGAGCGAGGGAATGGTGG 59.809 66.667 0.00 0.00 0.00 4.61
652 659 2.367202 GGAGCGAGGGAATGGTGGA 61.367 63.158 0.00 0.00 0.00 4.02
653 660 1.144936 GAGCGAGGGAATGGTGGAG 59.855 63.158 0.00 0.00 0.00 3.86
654 661 2.190578 GCGAGGGAATGGTGGAGG 59.809 66.667 0.00 0.00 0.00 4.30
655 662 2.367202 GCGAGGGAATGGTGGAGGA 61.367 63.158 0.00 0.00 0.00 3.71
656 663 1.826024 CGAGGGAATGGTGGAGGAG 59.174 63.158 0.00 0.00 0.00 3.69
657 664 0.687757 CGAGGGAATGGTGGAGGAGA 60.688 60.000 0.00 0.00 0.00 3.71
658 665 1.584724 GAGGGAATGGTGGAGGAGAA 58.415 55.000 0.00 0.00 0.00 2.87
659 666 1.488393 GAGGGAATGGTGGAGGAGAAG 59.512 57.143 0.00 0.00 0.00 2.85
660 667 0.106967 GGGAATGGTGGAGGAGAAGC 60.107 60.000 0.00 0.00 0.00 3.86
661 668 0.462759 GGAATGGTGGAGGAGAAGCG 60.463 60.000 0.00 0.00 0.00 4.68
662 669 0.462759 GAATGGTGGAGGAGAAGCGG 60.463 60.000 0.00 0.00 0.00 5.52
663 670 0.909610 AATGGTGGAGGAGAAGCGGA 60.910 55.000 0.00 0.00 0.00 5.54
664 671 1.333636 ATGGTGGAGGAGAAGCGGAG 61.334 60.000 0.00 0.00 0.00 4.63
665 672 2.726351 GGTGGAGGAGAAGCGGAGG 61.726 68.421 0.00 0.00 0.00 4.30
666 673 1.682684 GTGGAGGAGAAGCGGAGGA 60.683 63.158 0.00 0.00 0.00 3.71
667 674 1.380515 TGGAGGAGAAGCGGAGGAG 60.381 63.158 0.00 0.00 0.00 3.69
668 675 2.131067 GGAGGAGAAGCGGAGGAGG 61.131 68.421 0.00 0.00 0.00 4.30
669 676 1.380650 GAGGAGAAGCGGAGGAGGT 60.381 63.158 0.00 0.00 0.00 3.85
670 677 1.671901 GAGGAGAAGCGGAGGAGGTG 61.672 65.000 0.00 0.00 0.00 4.00
671 678 1.682684 GGAGAAGCGGAGGAGGTGA 60.683 63.158 0.00 0.00 0.00 4.02
672 679 1.513622 GAGAAGCGGAGGAGGTGAC 59.486 63.158 0.00 0.00 0.00 3.67
673 680 1.228894 AGAAGCGGAGGAGGTGACA 60.229 57.895 0.00 0.00 0.00 3.58
674 681 1.079750 GAAGCGGAGGAGGTGACAC 60.080 63.158 0.00 0.00 0.00 3.67
675 682 2.820767 GAAGCGGAGGAGGTGACACG 62.821 65.000 0.00 0.00 0.00 4.49
676 683 3.681835 GCGGAGGAGGTGACACGT 61.682 66.667 0.00 0.00 0.00 4.49
677 684 2.258591 CGGAGGAGGTGACACGTG 59.741 66.667 15.48 15.48 0.00 4.49
678 685 2.048127 GGAGGAGGTGACACGTGC 60.048 66.667 17.22 11.37 0.00 5.34
679 686 2.430921 GAGGAGGTGACACGTGCG 60.431 66.667 17.22 0.00 29.52 5.34
680 687 4.664677 AGGAGGTGACACGTGCGC 62.665 66.667 17.22 14.64 29.52 6.09
698 705 4.511246 CCCGCCCCATGTCAGCAT 62.511 66.667 0.00 0.00 35.32 3.79
699 706 2.510411 CCGCCCCATGTCAGCATA 59.490 61.111 0.00 0.00 33.30 3.14
700 707 1.073722 CCGCCCCATGTCAGCATAT 59.926 57.895 0.00 0.00 33.30 1.78
701 708 0.957395 CCGCCCCATGTCAGCATATC 60.957 60.000 0.00 0.00 33.30 1.63
702 709 0.957395 CGCCCCATGTCAGCATATCC 60.957 60.000 0.00 0.00 33.30 2.59
703 710 0.610232 GCCCCATGTCAGCATATCCC 60.610 60.000 0.00 0.00 33.30 3.85
704 711 0.773014 CCCCATGTCAGCATATCCCA 59.227 55.000 0.00 0.00 33.30 4.37
705 712 1.356738 CCCCATGTCAGCATATCCCAT 59.643 52.381 0.00 0.00 33.30 4.00
706 713 2.619849 CCCCATGTCAGCATATCCCATC 60.620 54.545 0.00 0.00 33.30 3.51
707 714 2.040679 CCCATGTCAGCATATCCCATCA 59.959 50.000 0.00 0.00 33.30 3.07
708 715 3.079578 CCATGTCAGCATATCCCATCAC 58.920 50.000 0.00 0.00 33.30 3.06
709 716 3.497227 CCATGTCAGCATATCCCATCACA 60.497 47.826 0.00 0.00 33.30 3.58
710 717 4.332828 CATGTCAGCATATCCCATCACAT 58.667 43.478 0.00 0.00 33.30 3.21
711 718 3.746940 TGTCAGCATATCCCATCACATG 58.253 45.455 0.00 0.00 0.00 3.21
712 719 3.391955 TGTCAGCATATCCCATCACATGA 59.608 43.478 0.00 0.00 0.00 3.07
713 720 4.001652 GTCAGCATATCCCATCACATGAG 58.998 47.826 0.00 0.00 0.00 2.90
714 721 2.747989 CAGCATATCCCATCACATGAGC 59.252 50.000 0.00 0.00 0.00 4.26
715 722 2.374170 AGCATATCCCATCACATGAGCA 59.626 45.455 0.00 0.00 0.00 4.26
716 723 3.010250 AGCATATCCCATCACATGAGCAT 59.990 43.478 0.00 0.00 0.00 3.79
717 724 3.128764 GCATATCCCATCACATGAGCATG 59.871 47.826 8.82 8.82 44.15 4.06
718 725 1.617322 ATCCCATCACATGAGCATGC 58.383 50.000 10.51 10.51 42.39 4.06
719 726 0.256464 TCCCATCACATGAGCATGCA 59.744 50.000 21.98 0.00 42.39 3.96
720 727 0.668535 CCCATCACATGAGCATGCAG 59.331 55.000 21.98 9.13 42.39 4.41
721 728 1.675552 CCATCACATGAGCATGCAGA 58.324 50.000 21.98 5.70 42.39 4.26
722 729 1.333931 CCATCACATGAGCATGCAGAC 59.666 52.381 21.98 11.31 42.39 3.51
723 730 2.014128 CATCACATGAGCATGCAGACA 58.986 47.619 21.98 16.66 42.39 3.41
724 731 2.188062 TCACATGAGCATGCAGACAA 57.812 45.000 21.98 0.00 42.39 3.18
725 732 2.081462 TCACATGAGCATGCAGACAAG 58.919 47.619 21.98 15.32 42.39 3.16
726 733 0.809385 ACATGAGCATGCAGACAAGC 59.191 50.000 21.98 0.40 42.39 4.01
733 740 2.831043 TGCAGACAAGCAGCTCCA 59.169 55.556 0.00 0.00 40.11 3.86
734 741 1.598962 TGCAGACAAGCAGCTCCAC 60.599 57.895 0.00 0.00 40.11 4.02
735 742 1.302351 GCAGACAAGCAGCTCCACT 60.302 57.895 0.00 0.00 0.00 4.00
736 743 1.297456 GCAGACAAGCAGCTCCACTC 61.297 60.000 0.00 0.00 0.00 3.51
737 744 0.673022 CAGACAAGCAGCTCCACTCC 60.673 60.000 0.00 0.00 0.00 3.85
738 745 1.123861 AGACAAGCAGCTCCACTCCA 61.124 55.000 0.00 0.00 0.00 3.86
739 746 0.952984 GACAAGCAGCTCCACTCCAC 60.953 60.000 0.00 0.00 0.00 4.02
740 747 1.374190 CAAGCAGCTCCACTCCACT 59.626 57.895 0.00 0.00 0.00 4.00
741 748 0.673022 CAAGCAGCTCCACTCCACTC 60.673 60.000 0.00 0.00 0.00 3.51
742 749 1.123861 AAGCAGCTCCACTCCACTCA 61.124 55.000 0.00 0.00 0.00 3.41
743 750 1.079266 GCAGCTCCACTCCACTCAG 60.079 63.158 0.00 0.00 0.00 3.35
744 751 1.825281 GCAGCTCCACTCCACTCAGT 61.825 60.000 0.00 0.00 0.00 3.41
745 752 0.246086 CAGCTCCACTCCACTCAGTC 59.754 60.000 0.00 0.00 0.00 3.51
746 753 0.114168 AGCTCCACTCCACTCAGTCT 59.886 55.000 0.00 0.00 0.00 3.24
747 754 0.530288 GCTCCACTCCACTCAGTCTC 59.470 60.000 0.00 0.00 0.00 3.36
748 755 1.890573 GCTCCACTCCACTCAGTCTCT 60.891 57.143 0.00 0.00 0.00 3.10
749 756 2.091541 CTCCACTCCACTCAGTCTCTC 58.908 57.143 0.00 0.00 0.00 3.20
750 757 1.707989 TCCACTCCACTCAGTCTCTCT 59.292 52.381 0.00 0.00 0.00 3.10
751 758 1.818060 CCACTCCACTCAGTCTCTCTG 59.182 57.143 0.00 0.00 44.85 3.35
752 759 2.513753 CACTCCACTCAGTCTCTCTGT 58.486 52.381 0.00 0.00 43.97 3.41
753 760 2.487762 CACTCCACTCAGTCTCTCTGTC 59.512 54.545 0.00 0.00 43.97 3.51
754 761 2.375174 ACTCCACTCAGTCTCTCTGTCT 59.625 50.000 0.00 0.00 43.97 3.41
755 762 2.749076 CTCCACTCAGTCTCTCTGTCTG 59.251 54.545 0.00 0.00 43.97 3.51
756 763 2.373502 TCCACTCAGTCTCTCTGTCTGA 59.626 50.000 0.00 0.00 43.97 3.27
760 767 3.673902 CTCAGTCTCTCTGTCTGAGTCA 58.326 50.000 11.68 0.00 46.49 3.41
761 768 3.673902 TCAGTCTCTCTGTCTGAGTCAG 58.326 50.000 14.36 14.36 43.97 3.51
762 769 3.072330 TCAGTCTCTCTGTCTGAGTCAGT 59.928 47.826 19.53 0.00 43.97 3.41
763 770 3.436704 CAGTCTCTCTGTCTGAGTCAGTC 59.563 52.174 19.53 14.67 43.13 3.51
764 771 2.747446 GTCTCTCTGTCTGAGTCAGTCC 59.253 54.545 19.53 11.93 43.13 3.85
765 772 2.642311 TCTCTCTGTCTGAGTCAGTCCT 59.358 50.000 19.53 0.00 43.13 3.85
766 773 3.841255 TCTCTCTGTCTGAGTCAGTCCTA 59.159 47.826 19.53 4.61 43.13 2.94
767 774 3.938963 CTCTCTGTCTGAGTCAGTCCTAC 59.061 52.174 19.53 10.92 43.13 3.18
768 775 3.585289 TCTCTGTCTGAGTCAGTCCTACT 59.415 47.826 19.53 0.00 43.13 2.57
769 776 4.042311 TCTCTGTCTGAGTCAGTCCTACTT 59.958 45.833 19.53 0.00 43.13 2.24
770 777 4.730966 TCTGTCTGAGTCAGTCCTACTTT 58.269 43.478 19.53 0.00 34.86 2.66
771 778 4.762765 TCTGTCTGAGTCAGTCCTACTTTC 59.237 45.833 19.53 2.27 34.86 2.62
772 779 3.827302 TGTCTGAGTCAGTCCTACTTTCC 59.173 47.826 19.53 0.00 32.61 3.13
773 780 4.083565 GTCTGAGTCAGTCCTACTTTCCT 58.916 47.826 19.53 0.00 32.61 3.36
774 781 4.157105 GTCTGAGTCAGTCCTACTTTCCTC 59.843 50.000 19.53 0.00 32.61 3.71
775 782 4.043561 TCTGAGTCAGTCCTACTTTCCTCT 59.956 45.833 19.53 0.00 32.61 3.69
776 783 4.742012 TGAGTCAGTCCTACTTTCCTCTT 58.258 43.478 0.00 0.00 0.00 2.85
777 784 5.148502 TGAGTCAGTCCTACTTTCCTCTTT 58.851 41.667 0.00 0.00 0.00 2.52
778 785 5.244178 TGAGTCAGTCCTACTTTCCTCTTTC 59.756 44.000 0.00 0.00 0.00 2.62
779 786 5.399113 AGTCAGTCCTACTTTCCTCTTTCT 58.601 41.667 0.00 0.00 0.00 2.52
780 787 5.479027 AGTCAGTCCTACTTTCCTCTTTCTC 59.521 44.000 0.00 0.00 0.00 2.87
781 788 4.773149 TCAGTCCTACTTTCCTCTTTCTCC 59.227 45.833 0.00 0.00 0.00 3.71
782 789 4.081365 CAGTCCTACTTTCCTCTTTCTCCC 60.081 50.000 0.00 0.00 0.00 4.30
783 790 3.838903 GTCCTACTTTCCTCTTTCTCCCA 59.161 47.826 0.00 0.00 0.00 4.37
784 791 3.838903 TCCTACTTTCCTCTTTCTCCCAC 59.161 47.826 0.00 0.00 0.00 4.61
785 792 3.055021 CCTACTTTCCTCTTTCTCCCACC 60.055 52.174 0.00 0.00 0.00 4.61
786 793 2.418669 ACTTTCCTCTTTCTCCCACCA 58.581 47.619 0.00 0.00 0.00 4.17
787 794 2.106684 ACTTTCCTCTTTCTCCCACCAC 59.893 50.000 0.00 0.00 0.00 4.16
788 795 1.064825 TTCCTCTTTCTCCCACCACC 58.935 55.000 0.00 0.00 0.00 4.61
789 796 0.104672 TCCTCTTTCTCCCACCACCA 60.105 55.000 0.00 0.00 0.00 4.17
790 797 0.995024 CCTCTTTCTCCCACCACCAT 59.005 55.000 0.00 0.00 0.00 3.55
791 798 1.355720 CCTCTTTCTCCCACCACCATT 59.644 52.381 0.00 0.00 0.00 3.16
792 799 2.576191 CCTCTTTCTCCCACCACCATTA 59.424 50.000 0.00 0.00 0.00 1.90
793 800 3.203040 CCTCTTTCTCCCACCACCATTAT 59.797 47.826 0.00 0.00 0.00 1.28
794 801 4.455606 CTCTTTCTCCCACCACCATTATC 58.544 47.826 0.00 0.00 0.00 1.75
795 802 3.202151 TCTTTCTCCCACCACCATTATCC 59.798 47.826 0.00 0.00 0.00 2.59
796 803 2.587060 TCTCCCACCACCATTATCCT 57.413 50.000 0.00 0.00 0.00 3.24
797 804 2.408565 TCTCCCACCACCATTATCCTC 58.591 52.381 0.00 0.00 0.00 3.71
798 805 1.421646 CTCCCACCACCATTATCCTCC 59.578 57.143 0.00 0.00 0.00 4.30
799 806 1.010793 TCCCACCACCATTATCCTCCT 59.989 52.381 0.00 0.00 0.00 3.69
800 807 1.421646 CCCACCACCATTATCCTCCTC 59.578 57.143 0.00 0.00 0.00 3.71
801 808 1.421646 CCACCACCATTATCCTCCTCC 59.578 57.143 0.00 0.00 0.00 4.30
802 809 2.412591 CACCACCATTATCCTCCTCCT 58.587 52.381 0.00 0.00 0.00 3.69
803 810 2.370189 CACCACCATTATCCTCCTCCTC 59.630 54.545 0.00 0.00 0.00 3.71
804 811 1.981495 CCACCATTATCCTCCTCCTCC 59.019 57.143 0.00 0.00 0.00 4.30
805 812 2.428484 CCACCATTATCCTCCTCCTCCT 60.428 54.545 0.00 0.00 0.00 3.69
806 813 2.903135 CACCATTATCCTCCTCCTCCTC 59.097 54.545 0.00 0.00 0.00 3.71
840 847 3.665173 GATCACAATCGGAAGCAGTTC 57.335 47.619 0.00 0.00 0.00 3.01
890 897 2.653702 GAGGCGAGGCGAGCATAT 59.346 61.111 9.24 0.00 36.08 1.78
891 898 1.005630 GAGGCGAGGCGAGCATATT 60.006 57.895 9.24 0.00 36.08 1.28
892 899 0.601311 GAGGCGAGGCGAGCATATTT 60.601 55.000 9.24 0.00 36.08 1.40
893 900 0.882042 AGGCGAGGCGAGCATATTTG 60.882 55.000 9.24 0.00 36.08 2.32
908 915 5.535333 GCATATTTGCTCATATTTGCCTGT 58.465 37.500 0.35 0.00 45.77 4.00
909 916 5.632347 GCATATTTGCTCATATTTGCCTGTC 59.368 40.000 0.35 0.00 45.77 3.51
910 917 6.736519 GCATATTTGCTCATATTTGCCTGTCA 60.737 38.462 0.35 0.00 45.77 3.58
919 1071 0.893270 TTTGCCTGTCACGGATTGGG 60.893 55.000 0.00 0.00 0.00 4.12
928 1080 2.614057 GTCACGGATTGGGTCATTGATC 59.386 50.000 0.00 0.00 0.00 2.92
946 1098 3.447586 TGATCCTCTCCAGTTTTACTCCG 59.552 47.826 0.00 0.00 0.00 4.63
950 1102 3.195825 CCTCTCCAGTTTTACTCCGATGT 59.804 47.826 0.00 0.00 0.00 3.06
951 1103 4.401519 CCTCTCCAGTTTTACTCCGATGTA 59.598 45.833 0.00 0.00 0.00 2.29
953 1105 6.407074 CCTCTCCAGTTTTACTCCGATGTATT 60.407 42.308 0.00 0.00 0.00 1.89
954 1106 6.570692 TCTCCAGTTTTACTCCGATGTATTC 58.429 40.000 0.00 0.00 0.00 1.75
955 1107 6.153851 TCTCCAGTTTTACTCCGATGTATTCA 59.846 38.462 0.00 0.00 0.00 2.57
957 1109 6.984474 TCCAGTTTTACTCCGATGTATTCATC 59.016 38.462 2.37 2.37 44.84 2.92
958 1110 6.202954 CCAGTTTTACTCCGATGTATTCATCC 59.797 42.308 6.73 0.00 45.32 3.51
960 1112 7.495934 CAGTTTTACTCCGATGTATTCATCCTT 59.504 37.037 6.73 0.00 45.32 3.36
961 1113 7.711339 AGTTTTACTCCGATGTATTCATCCTTC 59.289 37.037 6.73 0.00 45.32 3.46
964 1116 5.848406 ACTCCGATGTATTCATCCTTCTTC 58.152 41.667 6.73 0.00 45.32 2.87
979 1141 3.501445 CCTTCTTCTCTTTGCAGTTCCAG 59.499 47.826 0.00 0.00 0.00 3.86
980 1142 3.845781 TCTTCTCTTTGCAGTTCCAGT 57.154 42.857 0.00 0.00 0.00 4.00
981 1143 4.156455 TCTTCTCTTTGCAGTTCCAGTT 57.844 40.909 0.00 0.00 0.00 3.16
982 1144 4.526970 TCTTCTCTTTGCAGTTCCAGTTT 58.473 39.130 0.00 0.00 0.00 2.66
1126 1288 1.453379 CCATTCCCTCAGCAGCAGG 60.453 63.158 0.00 0.00 0.00 4.85
1127 1289 1.302285 CATTCCCTCAGCAGCAGGT 59.698 57.895 0.00 0.00 0.00 4.00
1166 1328 2.046285 GCAACCAGGGATTCACCGG 61.046 63.158 0.00 0.00 40.11 5.28
1310 1472 4.748798 CTCCTCCCCTGCCCCTGT 62.749 72.222 0.00 0.00 0.00 4.00
1311 1473 3.289211 TCCTCCCCTGCCCCTGTA 61.289 66.667 0.00 0.00 0.00 2.74
1372 1534 4.170292 CAAGCAATGGAAGAACCTTCAG 57.830 45.455 8.70 0.00 39.86 3.02
1375 1543 2.163211 GCAATGGAAGAACCTTCAGAGC 59.837 50.000 8.70 3.83 39.86 4.09
1382 1598 1.151810 AACCTTCAGAGCCCCAGGA 60.152 57.895 0.00 0.00 0.00 3.86
1383 1599 0.772124 AACCTTCAGAGCCCCAGGAA 60.772 55.000 0.00 0.00 0.00 3.36
1488 1704 0.749454 ACCATTTCATCGCCCAGCTC 60.749 55.000 0.00 0.00 0.00 4.09
1491 1707 1.925285 ATTTCATCGCCCAGCTCCCA 61.925 55.000 0.00 0.00 0.00 4.37
1520 1736 0.392998 CTCCACCACTACCATGTGCC 60.393 60.000 0.00 0.00 36.68 5.01
1522 1738 0.038166 CCACCACTACCATGTGCCTT 59.962 55.000 0.00 0.00 36.68 4.35
1523 1739 1.453155 CACCACTACCATGTGCCTTC 58.547 55.000 0.00 0.00 36.68 3.46
1529 1745 3.191371 CACTACCATGTGCCTTCCTTTTC 59.809 47.826 0.00 0.00 0.00 2.29
1535 1751 2.863809 TGTGCCTTCCTTTTCCTCTTC 58.136 47.619 0.00 0.00 0.00 2.87
1587 1828 3.485463 TTTTTGTCACGGTCCTGATCT 57.515 42.857 0.00 0.00 0.00 2.75
1588 1829 2.455674 TTTGTCACGGTCCTGATCTG 57.544 50.000 0.00 0.00 0.00 2.90
1590 1831 1.627864 TGTCACGGTCCTGATCTGAA 58.372 50.000 0.38 0.00 0.00 3.02
1592 1833 2.567169 TGTCACGGTCCTGATCTGAATT 59.433 45.455 0.38 0.00 0.00 2.17
1593 1834 3.007940 TGTCACGGTCCTGATCTGAATTT 59.992 43.478 0.38 0.00 0.00 1.82
1594 1835 3.372206 GTCACGGTCCTGATCTGAATTTG 59.628 47.826 0.38 0.00 0.00 2.32
1595 1836 2.679837 CACGGTCCTGATCTGAATTTGG 59.320 50.000 0.38 0.00 0.00 3.28
1596 1837 2.292267 CGGTCCTGATCTGAATTTGGG 58.708 52.381 0.38 0.00 0.00 4.12
1598 1839 3.549794 GGTCCTGATCTGAATTTGGGAG 58.450 50.000 0.38 0.00 0.00 4.30
1599 1840 3.200825 GGTCCTGATCTGAATTTGGGAGA 59.799 47.826 0.38 0.00 0.00 3.71
1615 1867 1.205893 GGAGAGCAGGTTTCGATCACT 59.794 52.381 0.00 0.00 0.00 3.41
1793 2045 0.317854 CACTCTGCTTGACGACGACA 60.318 55.000 0.00 0.00 0.00 4.35
1805 2057 3.665675 GACGACAATGGCTCCGGCT 62.666 63.158 0.00 0.00 38.73 5.52
1806 2058 2.892425 CGACAATGGCTCCGGCTC 60.892 66.667 0.00 0.00 38.73 4.70
1809 2061 3.207669 CAATGGCTCCGGCTCTGC 61.208 66.667 0.00 0.00 38.73 4.26
1826 2078 2.040278 CCTCCCAGAGGTCAGGCT 59.960 66.667 2.28 0.00 44.25 4.58
1827 2079 2.063378 CCTCCCAGAGGTCAGGCTC 61.063 68.421 2.28 0.00 44.25 4.70
1830 2082 2.040278 CCAGAGGTCAGGCTCCCT 59.960 66.667 1.91 1.91 0.00 4.20
1854 2106 7.917505 CCTTTTCACAGTCCATATTTATTCTGC 59.082 37.037 0.00 0.00 0.00 4.26
1863 2118 2.755952 ATTTATTCTGCCCCCTGGTC 57.244 50.000 0.00 0.00 0.00 4.02
1865 2120 1.213296 TTATTCTGCCCCCTGGTCTC 58.787 55.000 0.00 0.00 0.00 3.36
1904 2159 7.576861 TTCTGAACTTAAATTTTCGTTCCCT 57.423 32.000 20.38 0.00 35.97 4.20
1906 2161 7.645402 TCTGAACTTAAATTTTCGTTCCCTTC 58.355 34.615 20.38 5.91 35.97 3.46
1910 2166 8.587952 AACTTAAATTTTCGTTCCCTTCAATG 57.412 30.769 0.00 0.00 0.00 2.82
2046 2302 1.443194 CCTTGACATTGTGCTGCGC 60.443 57.895 6.19 6.19 0.00 6.09
2098 2361 4.666655 GCAGACGCGCCAGTTATATATTTG 60.667 45.833 5.73 0.00 0.00 2.32
2103 2366 4.447724 CGCGCCAGTTATATATTTGACAGT 59.552 41.667 0.00 0.00 0.00 3.55
2106 2369 5.758296 CGCCAGTTATATATTTGACAGTGGT 59.242 40.000 0.00 0.00 0.00 4.16
2183 2456 1.463444 CCATTTGGACGGTCGTTCTTC 59.537 52.381 1.43 0.00 37.39 2.87
2276 2549 1.751563 GCCTACTCAGATGGGCCTC 59.248 63.158 4.53 0.00 38.77 4.70
2303 2576 9.098355 TCACTCAATATTGGTAAAAGAATCTCG 57.902 33.333 15.36 0.00 0.00 4.04
2313 2586 5.577554 GGTAAAAGAATCTCGACCTCTCAAC 59.422 44.000 2.11 0.00 0.00 3.18
2370 2645 9.762381 ATTACTTTGGATTTATTACCTGTTCCA 57.238 29.630 0.00 0.00 0.00 3.53
2450 2727 2.159462 GCTACAGCTTTCATTGAGCCAC 60.159 50.000 0.00 0.00 41.03 5.01
2541 2818 1.078637 GTGTTAAGGTCTCCCCGCC 60.079 63.158 0.00 0.00 38.74 6.13
2561 2838 6.274579 CCGCCAAACTAACTTTTCCTTTTAA 58.725 36.000 0.00 0.00 0.00 1.52
2562 2839 6.419710 CCGCCAAACTAACTTTTCCTTTTAAG 59.580 38.462 0.00 0.00 0.00 1.85
2563 2840 7.197703 CGCCAAACTAACTTTTCCTTTTAAGA 58.802 34.615 0.00 0.00 0.00 2.10
2564 2841 7.378728 CGCCAAACTAACTTTTCCTTTTAAGAG 59.621 37.037 0.00 0.00 0.00 2.85
2603 2884 4.202243 TGGGTTTCTTGAGCTGAAATTTGG 60.202 41.667 0.00 0.00 36.10 3.28
2614 2895 4.159135 AGCTGAAATTTGGTCAATGCCTAG 59.841 41.667 0.00 0.00 0.00 3.02
2669 2951 6.782494 TGATACCATAGATCAAGAAGGCACTA 59.218 38.462 0.00 0.00 31.07 2.74
2826 3108 4.778213 TGAACCCTGCTTGCTATATTCT 57.222 40.909 0.00 0.00 0.00 2.40
2836 3118 6.732154 TGCTTGCTATATTCTCTGAAAATGC 58.268 36.000 0.00 0.00 0.00 3.56
3016 3299 0.317160 GGTAAGCCAAGTGCCCAAAC 59.683 55.000 0.00 0.00 42.71 2.93
3070 3353 6.918892 TTATTTGGATATGTGTTCTGACCG 57.081 37.500 0.00 0.00 0.00 4.79
3150 3433 8.922237 AGACTAAATCAGAATCAGATAAGAGCA 58.078 33.333 5.39 0.00 0.00 4.26
3281 3564 6.765989 TGTGCAACTTCAGTATGTAACTCTTT 59.234 34.615 0.00 0.00 34.68 2.52
3291 3575 3.418684 TGTAACTCTTTGCCCCTCTTC 57.581 47.619 0.00 0.00 0.00 2.87
3416 3700 4.081365 TCAGTAGATGCACGGATTTTACCA 60.081 41.667 0.00 0.00 0.00 3.25
3501 3786 1.142748 CATCTCCCGGAGTGCAGTC 59.857 63.158 13.44 13.44 0.00 3.51
3502 3787 1.305297 ATCTCCCGGAGTGCAGTCA 60.305 57.895 22.68 1.58 0.00 3.41
3530 3815 1.697284 GAATGGGGCATCCTTCCTTC 58.303 55.000 0.00 0.00 36.20 3.46
3558 3844 4.350368 TTGGCTGTACAGAAAGTGATGA 57.650 40.909 27.08 0.00 0.00 2.92
3624 3952 6.937392 AGACTGGTAGAGAAAAGGATTGTAC 58.063 40.000 0.00 0.00 0.00 2.90
3640 3968 5.279809 GGATTGTACACCTAGAGTTGGTCAA 60.280 44.000 0.00 0.00 35.28 3.18
3696 4024 3.194861 TCTTCTGGTCACAAAGTTCACG 58.805 45.455 0.00 0.00 0.00 4.35
3774 4102 9.998106 TTATTTGCTGACTAAACTCTAAAGTCT 57.002 29.630 3.65 0.00 40.25 3.24
3775 4103 7.948278 TTTGCTGACTAAACTCTAAAGTCTC 57.052 36.000 3.65 0.00 40.25 3.36
3776 4104 6.902771 TGCTGACTAAACTCTAAAGTCTCT 57.097 37.500 3.65 0.00 40.25 3.10
3777 4105 7.997773 TGCTGACTAAACTCTAAAGTCTCTA 57.002 36.000 3.65 0.00 40.25 2.43
3778 4106 8.405418 TGCTGACTAAACTCTAAAGTCTCTAA 57.595 34.615 3.65 0.00 40.25 2.10
3859 4187 8.871686 AACCAACTGAAGATTGAAACAAATAC 57.128 30.769 0.00 0.00 0.00 1.89
3860 4188 8.006298 ACCAACTGAAGATTGAAACAAATACA 57.994 30.769 0.00 0.00 0.00 2.29
3861 4189 8.474025 ACCAACTGAAGATTGAAACAAATACAA 58.526 29.630 0.00 0.00 0.00 2.41
3862 4190 8.755018 CCAACTGAAGATTGAAACAAATACAAC 58.245 33.333 0.00 0.00 0.00 3.32
3863 4191 8.755018 CAACTGAAGATTGAAACAAATACAACC 58.245 33.333 0.00 0.00 0.00 3.77
3867 4195 5.783111 AGATTGAAACAAATACAACCTGCC 58.217 37.500 0.00 0.00 0.00 4.85
3960 4288 3.699067 CAACTTGCTTCAGAAACACTGG 58.301 45.455 0.00 0.00 45.76 4.00
3962 4290 3.620488 ACTTGCTTCAGAAACACTGGAA 58.380 40.909 0.00 0.00 45.76 3.53
4041 4370 3.552604 TTAATGTTGGCAAGCTTCGTC 57.447 42.857 0.00 0.00 0.00 4.20
4074 4403 4.273148 TCCAGCTAGAAAGTTTGACCTC 57.727 45.455 0.00 0.00 0.00 3.85
4079 4408 3.815401 GCTAGAAAGTTTGACCTCAGCAA 59.185 43.478 0.00 0.00 0.00 3.91
4156 4508 3.931468 CAGACTGTGCCTTATCTGTTGAG 59.069 47.826 0.00 0.00 35.00 3.02
4165 4517 4.787598 CCTTATCTGTTGAGTTGCACAAC 58.212 43.478 10.81 10.81 45.07 3.32
4265 4619 6.146184 TCAATCAGTCGATGTCAGACTTTTTC 59.854 38.462 1.31 0.00 45.74 2.29
4277 4631 3.960755 CAGACTTTTTCCCCCTGAAAGTT 59.039 43.478 2.68 0.00 43.57 2.66
4405 5206 3.959535 ATGGTAAATGGTGGCAAAGTG 57.040 42.857 0.00 0.00 0.00 3.16
4450 5251 0.881159 CCCGTAACGTGCCAGACAAA 60.881 55.000 0.00 0.00 0.00 2.83
4471 5272 0.874390 TTGCTCGTGATTTCTGCCAC 59.126 50.000 0.00 0.00 0.00 5.01
4566 5379 7.050377 TGAAGAAATCTCACCAAGATCCATAC 58.950 38.462 0.00 0.00 44.26 2.39
4763 5577 2.827322 TGAGGCAATGAACATTCTTGGG 59.173 45.455 0.00 0.00 0.00 4.12
4836 5651 3.321497 GGCTCGCTTTATGGTATCTGAG 58.679 50.000 0.00 0.00 0.00 3.35
4844 5659 6.565435 CGCTTTATGGTATCTGAGAAATGCAG 60.565 42.308 0.00 0.00 34.71 4.41
4863 5679 3.437049 GCAGCCTTCCTAAGTTTACTGTG 59.563 47.826 0.00 0.00 0.00 3.66
4864 5680 3.437049 CAGCCTTCCTAAGTTTACTGTGC 59.563 47.826 0.00 0.00 0.00 4.57
4876 5723 4.821260 AGTTTACTGTGCACATGATGTTCA 59.179 37.500 22.00 0.00 0.00 3.18
4885 5732 5.343058 GTGCACATGATGTTCATTGTTACAC 59.657 40.000 13.17 0.00 34.28 2.90
4894 5741 8.556194 TGATGTTCATTGTTACACTTACTTGTC 58.444 33.333 0.00 0.00 0.00 3.18
4907 5754 8.184304 ACACTTACTTGTCTCTTTATCTGAGT 57.816 34.615 0.00 0.00 33.59 3.41
4958 5805 3.971150 AGATCTCGGAATAGTTTCGCAG 58.029 45.455 0.00 0.00 32.28 5.18
5041 5888 8.362639 ACTGAAGATAAACGTCAAGGTTAGTTA 58.637 33.333 0.00 0.00 35.15 2.24
5042 5889 8.752766 TGAAGATAAACGTCAAGGTTAGTTAG 57.247 34.615 0.00 0.00 35.15 2.34
5043 5890 8.362639 TGAAGATAAACGTCAAGGTTAGTTAGT 58.637 33.333 0.00 0.00 35.15 2.24
5044 5891 8.530269 AAGATAAACGTCAAGGTTAGTTAGTG 57.470 34.615 0.00 0.00 35.15 2.74
5051 5898 3.007614 TCAAGGTTAGTTAGTGTGCCCTC 59.992 47.826 0.00 0.00 0.00 4.30
5055 5902 3.307480 GGTTAGTTAGTGTGCCCTCATGT 60.307 47.826 0.00 0.00 0.00 3.21
5058 5905 2.106511 AGTTAGTGTGCCCTCATGTTGT 59.893 45.455 0.00 0.00 0.00 3.32
5071 5918 6.705825 GCCCTCATGTTGTTTTTCTTTACAAT 59.294 34.615 0.00 0.00 36.72 2.71
5154 6010 1.303074 CACTGTGCTGGTGGATGCT 60.303 57.895 0.00 0.00 0.00 3.79
5231 6087 1.273781 TGTGACCCATCCTCATCCTGA 60.274 52.381 0.00 0.00 0.00 3.86
5276 6132 5.414454 TCGCTGCTGTAAGTTGGAAAATATT 59.586 36.000 0.00 0.00 35.30 1.28
5277 6133 6.596106 TCGCTGCTGTAAGTTGGAAAATATTA 59.404 34.615 0.00 0.00 35.30 0.98
5413 6279 1.647545 CCGAGGTTACGAGGTACGCA 61.648 60.000 0.00 0.00 46.94 5.24
5518 6393 5.303078 AGTCAGTAGTGGCATGATTAGGTAG 59.697 44.000 4.71 0.00 0.00 3.18
5519 6394 4.588951 TCAGTAGTGGCATGATTAGGTAGG 59.411 45.833 0.00 0.00 0.00 3.18
5520 6395 4.345257 CAGTAGTGGCATGATTAGGTAGGT 59.655 45.833 0.00 0.00 0.00 3.08
5521 6396 5.538813 CAGTAGTGGCATGATTAGGTAGGTA 59.461 44.000 0.00 0.00 0.00 3.08
5613 6499 6.439636 AAATGCAGGGAGCTACTTATATCA 57.560 37.500 0.00 0.00 45.94 2.15
5679 6569 0.244721 GGTTTGTGCCCAATCAGAGC 59.755 55.000 0.00 0.00 0.00 4.09
5690 6580 1.002888 CAATCAGAGCACACCAGGTCT 59.997 52.381 0.00 0.00 46.48 3.85
5705 6595 0.871057 GGTCTTGTGCTGTCTGCTTC 59.129 55.000 3.20 0.00 43.37 3.86
5717 6607 1.751927 CTGCTTCCACTGATGCCCC 60.752 63.158 0.00 0.00 40.09 5.80
5822 6716 9.813446 CGAAAAGTAAGTACCTACTTTATCCAT 57.187 33.333 23.53 12.07 46.53 3.41
5825 6719 8.849543 AAGTAAGTACCTACTTTATCCATCCA 57.150 34.615 10.53 0.00 43.57 3.41
5883 6777 5.802465 AGATTCTGATCTCATTGTGTGTGT 58.198 37.500 0.00 0.00 38.21 3.72
5884 6778 5.873712 AGATTCTGATCTCATTGTGTGTGTC 59.126 40.000 0.00 0.00 38.21 3.67
5893 6787 0.251634 TTGTGTGTGTCACTCAGGCA 59.748 50.000 7.96 1.68 46.27 4.75
5980 6874 1.459592 ACGAGACTATTTGCGCACAAC 59.540 47.619 11.12 0.00 34.87 3.32
6293 7203 4.939439 ACGGGTCCAACAAACAATCTATAC 59.061 41.667 0.00 0.00 0.00 1.47
6294 7204 4.938832 CGGGTCCAACAAACAATCTATACA 59.061 41.667 0.00 0.00 0.00 2.29
6295 7205 5.413213 CGGGTCCAACAAACAATCTATACAA 59.587 40.000 0.00 0.00 0.00 2.41
6296 7206 6.094881 CGGGTCCAACAAACAATCTATACAAT 59.905 38.462 0.00 0.00 0.00 2.71
6297 7207 7.257722 GGGTCCAACAAACAATCTATACAATG 58.742 38.462 0.00 0.00 0.00 2.82
6420 7338 0.818296 CCTCTGCTACACGTAAGCCT 59.182 55.000 16.84 0.00 45.62 4.58
6432 7350 0.747852 GTAAGCCTCCCTCTCCTTCG 59.252 60.000 0.00 0.00 0.00 3.79
6573 7493 2.099098 ACTGCCTTGTTTCGGTGAAAAG 59.901 45.455 0.00 0.00 33.14 2.27
6591 7511 6.198966 GTGAAAAGTATTTCCACTGCTTTGTG 59.801 38.462 0.00 0.00 43.54 3.33
6611 7535 3.935828 GTGTCCTTACTGAAGCCATCTTC 59.064 47.826 0.00 0.00 46.85 2.87
6771 7695 4.041917 TCGGCGTCACGTGGTACC 62.042 66.667 17.00 13.12 34.94 3.34
6840 7764 5.499139 ACAATGTGAAGAACGTCATGTTT 57.501 34.783 0.00 0.00 42.09 2.83
6890 7814 6.886459 AGATTAAAATGCTCCTTAAGTCAGCA 59.114 34.615 22.18 22.18 46.87 4.41
6944 7868 5.986135 AGAAAGTAGTAATAATCTGCCAGCG 59.014 40.000 0.00 0.00 0.00 5.18
6979 7903 2.354203 GCCCTACTATGCTGGTCTATGC 60.354 54.545 0.00 0.00 0.00 3.14
7012 7936 7.321153 AGTACCATCTATGTGTGTACTTTGTC 58.679 38.462 0.00 0.00 39.11 3.18
7016 7940 6.457392 CCATCTATGTGTGTACTTTGTCATGC 60.457 42.308 0.00 0.00 0.00 4.06
7023 7947 5.907391 GTGTGTACTTTGTCATGCTGTAAAC 59.093 40.000 0.00 0.00 0.00 2.01
7044 7968 3.800506 ACGTTGAACCTCGAGTACTTTTG 59.199 43.478 12.31 0.00 0.00 2.44
7065 7991 1.494721 AGGTCTGGAGCTTGAAAACCA 59.505 47.619 8.38 0.00 35.28 3.67
7082 8008 1.136147 CAGAGCATTCAAGCCACGC 59.864 57.895 0.00 0.00 34.23 5.34
7098 8024 3.660621 GCCTTGCGCTGTTCTTCT 58.339 55.556 9.73 0.00 0.00 2.85
7099 8025 1.952263 GCCTTGCGCTGTTCTTCTT 59.048 52.632 9.73 0.00 0.00 2.52
7100 8026 0.110010 GCCTTGCGCTGTTCTTCTTC 60.110 55.000 9.73 0.00 0.00 2.87
7103 8029 2.096019 CCTTGCGCTGTTCTTCTTCTTC 60.096 50.000 9.73 0.00 0.00 2.87
7119 8045 9.454859 TCTTCTTCTTCTTCTTCTTCTTTTTGT 57.545 29.630 0.00 0.00 0.00 2.83
7122 8048 9.014297 TCTTCTTCTTCTTCTTCTTTTTGTTGT 57.986 29.630 0.00 0.00 0.00 3.32
7148 8074 9.561069 TTTTATTAAGATCACTTGGCTCTATCC 57.439 33.333 0.00 0.00 37.53 2.59
7152 8078 2.254152 TCACTTGGCTCTATCCTGGT 57.746 50.000 0.00 0.00 0.00 4.00
7164 8090 1.313812 ATCCTGGTGACGTCGAGGAC 61.314 60.000 25.03 12.73 43.12 3.85
7195 8143 5.575019 CGGTGTAAGTTTGCAAGTTAGTTT 58.425 37.500 0.00 0.00 0.00 2.66
7199 8147 6.196538 GTGTAAGTTTGCAAGTTAGTTTCTGC 59.803 38.462 0.00 0.00 0.00 4.26
7201 8149 5.323371 AGTTTGCAAGTTAGTTTCTGCAA 57.677 34.783 0.00 4.32 39.96 4.08
7221 8188 4.498009 GCAACTGTTTCTGAAGCTTTGCTA 60.498 41.667 23.50 0.37 38.25 3.49
7416 8405 6.409524 ACTTTCCAAATCAATGACACACAT 57.590 33.333 0.00 0.00 41.45 3.21
7572 8585 7.496920 CAGAGATTCATCAGTTTTATGCCAGTA 59.503 37.037 0.00 0.00 0.00 2.74
7582 8595 6.319658 CAGTTTTATGCCAGTATGACCTGATT 59.680 38.462 0.00 0.00 39.69 2.57
7835 8850 1.764571 TTGGGACGGTCTTCACCTGG 61.765 60.000 8.23 0.00 41.17 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.365472 TCATGGAGAATCTGACGGAGAA 58.635 45.455 0.00 0.00 33.12 2.87
82 83 3.148031 GAGATCGGGGCGTGGTACC 62.148 68.421 4.43 4.43 0.00 3.34
254 257 4.648762 TGGAGAGAGGATTCAGATTGAGAC 59.351 45.833 0.00 0.00 0.00 3.36
591 598 3.117474 TCCCACACTAGACTATCTCCCAG 60.117 52.174 0.00 0.00 0.00 4.45
595 602 5.141182 TCCATTCCCACACTAGACTATCTC 58.859 45.833 0.00 0.00 0.00 2.75
598 605 6.441924 CCATATCCATTCCCACACTAGACTAT 59.558 42.308 0.00 0.00 0.00 2.12
599 606 5.780282 CCATATCCATTCCCACACTAGACTA 59.220 44.000 0.00 0.00 0.00 2.59
600 607 4.594920 CCATATCCATTCCCACACTAGACT 59.405 45.833 0.00 0.00 0.00 3.24
601 608 4.593206 TCCATATCCATTCCCACACTAGAC 59.407 45.833 0.00 0.00 0.00 2.59
602 609 4.826616 TCCATATCCATTCCCACACTAGA 58.173 43.478 0.00 0.00 0.00 2.43
603 610 5.494724 CATCCATATCCATTCCCACACTAG 58.505 45.833 0.00 0.00 0.00 2.57
604 611 4.263462 GCATCCATATCCATTCCCACACTA 60.263 45.833 0.00 0.00 0.00 2.74
605 612 3.499202 GCATCCATATCCATTCCCACACT 60.499 47.826 0.00 0.00 0.00 3.55
606 613 2.821969 GCATCCATATCCATTCCCACAC 59.178 50.000 0.00 0.00 0.00 3.82
607 614 2.225091 GGCATCCATATCCATTCCCACA 60.225 50.000 0.00 0.00 0.00 4.17
608 615 2.225091 TGGCATCCATATCCATTCCCAC 60.225 50.000 0.00 0.00 0.00 4.61
609 616 2.042026 CTGGCATCCATATCCATTCCCA 59.958 50.000 0.00 0.00 30.82 4.37
610 617 2.622452 CCTGGCATCCATATCCATTCCC 60.622 54.545 0.00 0.00 30.82 3.97
611 618 2.731572 CCTGGCATCCATATCCATTCC 58.268 52.381 0.00 0.00 30.82 3.01
612 619 2.097825 GCCTGGCATCCATATCCATTC 58.902 52.381 15.17 0.00 30.82 2.67
613 620 1.714787 AGCCTGGCATCCATATCCATT 59.285 47.619 22.65 0.00 30.82 3.16
614 621 1.005569 CAGCCTGGCATCCATATCCAT 59.994 52.381 22.65 0.00 30.82 3.41
615 622 0.402887 CAGCCTGGCATCCATATCCA 59.597 55.000 22.65 0.00 30.82 3.41
616 623 0.323178 CCAGCCTGGCATCCATATCC 60.323 60.000 22.65 0.00 30.82 2.59
617 624 0.694771 TCCAGCCTGGCATCCATATC 59.305 55.000 22.65 0.00 37.47 1.63
618 625 0.697079 CTCCAGCCTGGCATCCATAT 59.303 55.000 22.65 0.00 37.47 1.78
619 626 2.060567 GCTCCAGCCTGGCATCCATA 62.061 60.000 22.65 0.00 37.47 2.74
620 627 2.924640 CTCCAGCCTGGCATCCAT 59.075 61.111 22.65 0.00 37.47 3.41
621 628 4.119363 GCTCCAGCCTGGCATCCA 62.119 66.667 22.65 0.20 37.47 3.41
623 630 4.166888 TCGCTCCAGCCTGGCATC 62.167 66.667 22.65 3.65 37.47 3.91
624 631 4.172512 CTCGCTCCAGCCTGGCAT 62.173 66.667 22.65 2.87 37.47 4.40
628 635 2.739996 ATTCCCTCGCTCCAGCCTG 61.740 63.158 0.00 0.00 37.91 4.85
629 636 2.366167 ATTCCCTCGCTCCAGCCT 60.366 61.111 0.00 0.00 37.91 4.58
630 637 2.203126 CATTCCCTCGCTCCAGCC 60.203 66.667 0.00 0.00 37.91 4.85
631 638 2.203126 CCATTCCCTCGCTCCAGC 60.203 66.667 0.00 0.00 37.78 4.85
632 639 1.153289 CACCATTCCCTCGCTCCAG 60.153 63.158 0.00 0.00 0.00 3.86
633 640 2.669133 CCACCATTCCCTCGCTCCA 61.669 63.158 0.00 0.00 0.00 3.86
634 641 2.190578 CCACCATTCCCTCGCTCC 59.809 66.667 0.00 0.00 0.00 4.70
635 642 1.144936 CTCCACCATTCCCTCGCTC 59.855 63.158 0.00 0.00 0.00 5.03
636 643 2.370445 CCTCCACCATTCCCTCGCT 61.370 63.158 0.00 0.00 0.00 4.93
637 644 2.190578 CCTCCACCATTCCCTCGC 59.809 66.667 0.00 0.00 0.00 5.03
638 645 0.687757 TCTCCTCCACCATTCCCTCG 60.688 60.000 0.00 0.00 0.00 4.63
639 646 1.488393 CTTCTCCTCCACCATTCCCTC 59.512 57.143 0.00 0.00 0.00 4.30
640 647 1.589414 CTTCTCCTCCACCATTCCCT 58.411 55.000 0.00 0.00 0.00 4.20
641 648 0.106967 GCTTCTCCTCCACCATTCCC 60.107 60.000 0.00 0.00 0.00 3.97
642 649 0.462759 CGCTTCTCCTCCACCATTCC 60.463 60.000 0.00 0.00 0.00 3.01
643 650 0.462759 CCGCTTCTCCTCCACCATTC 60.463 60.000 0.00 0.00 0.00 2.67
644 651 0.909610 TCCGCTTCTCCTCCACCATT 60.910 55.000 0.00 0.00 0.00 3.16
645 652 1.306141 TCCGCTTCTCCTCCACCAT 60.306 57.895 0.00 0.00 0.00 3.55
646 653 1.984570 CTCCGCTTCTCCTCCACCA 60.985 63.158 0.00 0.00 0.00 4.17
647 654 2.726351 CCTCCGCTTCTCCTCCACC 61.726 68.421 0.00 0.00 0.00 4.61
648 655 1.671901 CTCCTCCGCTTCTCCTCCAC 61.672 65.000 0.00 0.00 0.00 4.02
649 656 1.380515 CTCCTCCGCTTCTCCTCCA 60.381 63.158 0.00 0.00 0.00 3.86
650 657 2.131067 CCTCCTCCGCTTCTCCTCC 61.131 68.421 0.00 0.00 0.00 4.30
651 658 1.380650 ACCTCCTCCGCTTCTCCTC 60.381 63.158 0.00 0.00 0.00 3.71
652 659 1.684049 CACCTCCTCCGCTTCTCCT 60.684 63.158 0.00 0.00 0.00 3.69
653 660 1.682684 TCACCTCCTCCGCTTCTCC 60.683 63.158 0.00 0.00 0.00 3.71
654 661 1.251527 TGTCACCTCCTCCGCTTCTC 61.252 60.000 0.00 0.00 0.00 2.87
655 662 1.228894 TGTCACCTCCTCCGCTTCT 60.229 57.895 0.00 0.00 0.00 2.85
656 663 1.079750 GTGTCACCTCCTCCGCTTC 60.080 63.158 0.00 0.00 0.00 3.86
657 664 2.932234 CGTGTCACCTCCTCCGCTT 61.932 63.158 0.00 0.00 0.00 4.68
658 665 3.374402 CGTGTCACCTCCTCCGCT 61.374 66.667 0.00 0.00 0.00 5.52
659 666 3.681835 ACGTGTCACCTCCTCCGC 61.682 66.667 0.00 0.00 0.00 5.54
660 667 2.258591 CACGTGTCACCTCCTCCG 59.741 66.667 7.58 0.00 0.00 4.63
661 668 2.048127 GCACGTGTCACCTCCTCC 60.048 66.667 18.38 0.00 0.00 4.30
662 669 2.430921 CGCACGTGTCACCTCCTC 60.431 66.667 18.38 0.00 0.00 3.71
663 670 4.664677 GCGCACGTGTCACCTCCT 62.665 66.667 18.38 0.00 0.00 3.69
681 688 2.416107 ATATGCTGACATGGGGCGGG 62.416 60.000 0.00 0.00 37.04 6.13
682 689 0.957395 GATATGCTGACATGGGGCGG 60.957 60.000 0.00 0.00 37.04 6.13
683 690 0.957395 GGATATGCTGACATGGGGCG 60.957 60.000 0.00 0.00 37.04 6.13
684 691 0.610232 GGGATATGCTGACATGGGGC 60.610 60.000 0.00 0.00 37.04 5.80
685 692 0.773014 TGGGATATGCTGACATGGGG 59.227 55.000 0.00 0.00 37.04 4.96
686 693 2.040679 TGATGGGATATGCTGACATGGG 59.959 50.000 0.00 0.00 37.04 4.00
687 694 3.079578 GTGATGGGATATGCTGACATGG 58.920 50.000 0.00 0.00 37.04 3.66
688 695 3.746940 TGTGATGGGATATGCTGACATG 58.253 45.455 0.00 0.00 37.04 3.21
689 696 4.042435 TCATGTGATGGGATATGCTGACAT 59.958 41.667 0.00 0.00 40.49 3.06
690 697 3.391955 TCATGTGATGGGATATGCTGACA 59.608 43.478 0.00 0.00 0.00 3.58
691 698 4.001652 CTCATGTGATGGGATATGCTGAC 58.998 47.826 0.00 0.00 30.24 3.51
692 699 3.558533 GCTCATGTGATGGGATATGCTGA 60.559 47.826 0.00 0.00 30.24 4.26
693 700 2.747989 GCTCATGTGATGGGATATGCTG 59.252 50.000 0.00 0.00 30.24 4.41
694 701 2.374170 TGCTCATGTGATGGGATATGCT 59.626 45.455 0.00 0.00 30.24 3.79
695 702 2.786777 TGCTCATGTGATGGGATATGC 58.213 47.619 0.00 0.00 30.24 3.14
696 703 3.128764 GCATGCTCATGTGATGGGATATG 59.871 47.826 11.37 0.00 40.80 1.78
697 704 3.245122 TGCATGCTCATGTGATGGGATAT 60.245 43.478 20.33 0.00 40.80 1.63
698 705 2.106857 TGCATGCTCATGTGATGGGATA 59.893 45.455 20.33 0.00 40.80 2.59
699 706 1.133606 TGCATGCTCATGTGATGGGAT 60.134 47.619 20.33 0.00 40.80 3.85
700 707 0.256464 TGCATGCTCATGTGATGGGA 59.744 50.000 20.33 0.00 40.80 4.37
701 708 0.668535 CTGCATGCTCATGTGATGGG 59.331 55.000 20.33 0.00 40.80 4.00
702 709 1.333931 GTCTGCATGCTCATGTGATGG 59.666 52.381 20.33 0.00 40.80 3.51
703 710 2.014128 TGTCTGCATGCTCATGTGATG 58.986 47.619 20.33 1.64 40.80 3.07
704 711 2.413310 TGTCTGCATGCTCATGTGAT 57.587 45.000 20.33 0.00 40.80 3.06
705 712 2.081462 CTTGTCTGCATGCTCATGTGA 58.919 47.619 20.33 4.79 40.80 3.58
706 713 1.467543 GCTTGTCTGCATGCTCATGTG 60.468 52.381 20.33 6.58 41.05 3.21
707 714 0.809385 GCTTGTCTGCATGCTCATGT 59.191 50.000 20.33 0.00 41.05 3.21
708 715 0.808755 TGCTTGTCTGCATGCTCATG 59.191 50.000 20.33 16.52 43.58 3.07
709 716 1.095600 CTGCTTGTCTGCATGCTCAT 58.904 50.000 20.33 0.00 43.58 2.90
710 717 1.583495 GCTGCTTGTCTGCATGCTCA 61.583 55.000 20.33 12.45 43.58 4.26
711 718 1.136984 GCTGCTTGTCTGCATGCTC 59.863 57.895 20.33 9.94 43.58 4.26
712 719 1.303398 AGCTGCTTGTCTGCATGCT 60.303 52.632 20.33 0.00 43.58 3.79
713 720 1.136984 GAGCTGCTTGTCTGCATGC 59.863 57.895 11.82 11.82 42.48 4.06
714 721 0.958876 TGGAGCTGCTTGTCTGCATG 60.959 55.000 6.82 0.00 42.48 4.06
715 722 0.959372 GTGGAGCTGCTTGTCTGCAT 60.959 55.000 6.82 0.00 42.48 3.96
716 723 1.598962 GTGGAGCTGCTTGTCTGCA 60.599 57.895 6.82 0.00 41.48 4.41
717 724 1.297456 GAGTGGAGCTGCTTGTCTGC 61.297 60.000 6.82 0.00 39.61 4.26
718 725 0.673022 GGAGTGGAGCTGCTTGTCTG 60.673 60.000 6.82 0.00 32.34 3.51
719 726 1.123861 TGGAGTGGAGCTGCTTGTCT 61.124 55.000 6.82 2.31 36.43 3.41
720 727 0.952984 GTGGAGTGGAGCTGCTTGTC 60.953 60.000 6.82 0.03 36.43 3.18
721 728 1.072159 GTGGAGTGGAGCTGCTTGT 59.928 57.895 6.82 0.00 36.43 3.16
722 729 0.673022 GAGTGGAGTGGAGCTGCTTG 60.673 60.000 6.82 0.00 36.43 4.01
723 730 1.123861 TGAGTGGAGTGGAGCTGCTT 61.124 55.000 6.82 0.00 36.43 3.91
724 731 1.534959 TGAGTGGAGTGGAGCTGCT 60.535 57.895 6.82 0.00 36.43 4.24
725 732 1.079266 CTGAGTGGAGTGGAGCTGC 60.079 63.158 0.00 0.00 35.97 5.25
726 733 0.246086 GACTGAGTGGAGTGGAGCTG 59.754 60.000 0.00 0.00 0.00 4.24
727 734 0.114168 AGACTGAGTGGAGTGGAGCT 59.886 55.000 0.00 0.00 0.00 4.09
728 735 0.530288 GAGACTGAGTGGAGTGGAGC 59.470 60.000 0.00 0.00 0.00 4.70
729 736 2.091541 GAGAGACTGAGTGGAGTGGAG 58.908 57.143 0.00 0.00 0.00 3.86
730 737 1.707989 AGAGAGACTGAGTGGAGTGGA 59.292 52.381 0.00 0.00 0.00 4.02
731 738 2.214376 AGAGAGACTGAGTGGAGTGG 57.786 55.000 0.00 0.00 0.00 4.00
748 755 4.374689 AAGTAGGACTGACTCAGACAGA 57.625 45.455 11.36 0.00 38.55 3.41
749 756 4.082463 GGAAAGTAGGACTGACTCAGACAG 60.082 50.000 13.25 2.26 40.68 3.51
750 757 3.827302 GGAAAGTAGGACTGACTCAGACA 59.173 47.826 13.25 0.00 35.18 3.41
751 758 4.083565 AGGAAAGTAGGACTGACTCAGAC 58.916 47.826 13.25 6.51 35.18 3.51
752 759 4.043561 AGAGGAAAGTAGGACTGACTCAGA 59.956 45.833 13.25 0.00 35.18 3.27
753 760 4.340617 AGAGGAAAGTAGGACTGACTCAG 58.659 47.826 4.36 4.36 37.52 3.35
754 761 4.390129 AGAGGAAAGTAGGACTGACTCA 57.610 45.455 0.00 0.00 30.38 3.41
755 762 5.479027 AGAAAGAGGAAAGTAGGACTGACTC 59.521 44.000 0.00 0.00 0.00 3.36
756 763 5.399113 AGAAAGAGGAAAGTAGGACTGACT 58.601 41.667 0.00 0.00 0.00 3.41
757 764 5.336929 GGAGAAAGAGGAAAGTAGGACTGAC 60.337 48.000 0.00 0.00 0.00 3.51
758 765 4.773149 GGAGAAAGAGGAAAGTAGGACTGA 59.227 45.833 0.00 0.00 0.00 3.41
759 766 4.081365 GGGAGAAAGAGGAAAGTAGGACTG 60.081 50.000 0.00 0.00 0.00 3.51
760 767 4.098155 GGGAGAAAGAGGAAAGTAGGACT 58.902 47.826 0.00 0.00 0.00 3.85
761 768 3.838903 TGGGAGAAAGAGGAAAGTAGGAC 59.161 47.826 0.00 0.00 0.00 3.85
762 769 3.838903 GTGGGAGAAAGAGGAAAGTAGGA 59.161 47.826 0.00 0.00 0.00 2.94
763 770 3.055021 GGTGGGAGAAAGAGGAAAGTAGG 60.055 52.174 0.00 0.00 0.00 3.18
764 771 3.583086 TGGTGGGAGAAAGAGGAAAGTAG 59.417 47.826 0.00 0.00 0.00 2.57
765 772 3.326880 GTGGTGGGAGAAAGAGGAAAGTA 59.673 47.826 0.00 0.00 0.00 2.24
766 773 2.106684 GTGGTGGGAGAAAGAGGAAAGT 59.893 50.000 0.00 0.00 0.00 2.66
767 774 2.553247 GGTGGTGGGAGAAAGAGGAAAG 60.553 54.545 0.00 0.00 0.00 2.62
768 775 1.423921 GGTGGTGGGAGAAAGAGGAAA 59.576 52.381 0.00 0.00 0.00 3.13
769 776 1.064825 GGTGGTGGGAGAAAGAGGAA 58.935 55.000 0.00 0.00 0.00 3.36
770 777 0.104672 TGGTGGTGGGAGAAAGAGGA 60.105 55.000 0.00 0.00 0.00 3.71
771 778 0.995024 ATGGTGGTGGGAGAAAGAGG 59.005 55.000 0.00 0.00 0.00 3.69
772 779 2.887151 AATGGTGGTGGGAGAAAGAG 57.113 50.000 0.00 0.00 0.00 2.85
773 780 3.202151 GGATAATGGTGGTGGGAGAAAGA 59.798 47.826 0.00 0.00 0.00 2.52
774 781 3.203040 AGGATAATGGTGGTGGGAGAAAG 59.797 47.826 0.00 0.00 0.00 2.62
775 782 3.197983 AGGATAATGGTGGTGGGAGAAA 58.802 45.455 0.00 0.00 0.00 2.52
776 783 2.777692 GAGGATAATGGTGGTGGGAGAA 59.222 50.000 0.00 0.00 0.00 2.87
777 784 2.408565 GAGGATAATGGTGGTGGGAGA 58.591 52.381 0.00 0.00 0.00 3.71
778 785 1.421646 GGAGGATAATGGTGGTGGGAG 59.578 57.143 0.00 0.00 0.00 4.30
779 786 1.010793 AGGAGGATAATGGTGGTGGGA 59.989 52.381 0.00 0.00 0.00 4.37
780 787 1.421646 GAGGAGGATAATGGTGGTGGG 59.578 57.143 0.00 0.00 0.00 4.61
781 788 1.421646 GGAGGAGGATAATGGTGGTGG 59.578 57.143 0.00 0.00 0.00 4.61
782 789 2.370189 GAGGAGGAGGATAATGGTGGTG 59.630 54.545 0.00 0.00 0.00 4.17
783 790 2.695585 GAGGAGGAGGATAATGGTGGT 58.304 52.381 0.00 0.00 0.00 4.16
784 791 1.981495 GGAGGAGGAGGATAATGGTGG 59.019 57.143 0.00 0.00 0.00 4.61
785 792 2.903135 GAGGAGGAGGAGGATAATGGTG 59.097 54.545 0.00 0.00 0.00 4.17
786 793 2.158081 GGAGGAGGAGGAGGATAATGGT 60.158 54.545 0.00 0.00 0.00 3.55
787 794 2.545810 GGAGGAGGAGGAGGATAATGG 58.454 57.143 0.00 0.00 0.00 3.16
788 795 2.158097 TGGGAGGAGGAGGAGGATAATG 60.158 54.545 0.00 0.00 0.00 1.90
789 796 2.165112 TGGGAGGAGGAGGAGGATAAT 58.835 52.381 0.00 0.00 0.00 1.28
790 797 1.632769 TGGGAGGAGGAGGAGGATAA 58.367 55.000 0.00 0.00 0.00 1.75
791 798 1.632769 TTGGGAGGAGGAGGAGGATA 58.367 55.000 0.00 0.00 0.00 2.59
792 799 0.725133 TTTGGGAGGAGGAGGAGGAT 59.275 55.000 0.00 0.00 0.00 3.24
793 800 0.043334 CTTTGGGAGGAGGAGGAGGA 59.957 60.000 0.00 0.00 0.00 3.71
794 801 1.631071 GCTTTGGGAGGAGGAGGAGG 61.631 65.000 0.00 0.00 0.00 4.30
795 802 0.911525 TGCTTTGGGAGGAGGAGGAG 60.912 60.000 0.00 0.00 0.00 3.69
796 803 0.475632 TTGCTTTGGGAGGAGGAGGA 60.476 55.000 0.00 0.00 0.00 3.71
797 804 0.627986 ATTGCTTTGGGAGGAGGAGG 59.372 55.000 0.00 0.00 0.00 4.30
798 805 1.283029 TGATTGCTTTGGGAGGAGGAG 59.717 52.381 0.00 0.00 0.00 3.69
799 806 1.004745 GTGATTGCTTTGGGAGGAGGA 59.995 52.381 0.00 0.00 0.00 3.71
800 807 1.467920 GTGATTGCTTTGGGAGGAGG 58.532 55.000 0.00 0.00 0.00 4.30
801 808 1.089920 CGTGATTGCTTTGGGAGGAG 58.910 55.000 0.00 0.00 0.00 3.69
802 809 0.690192 TCGTGATTGCTTTGGGAGGA 59.310 50.000 0.00 0.00 0.00 3.71
803 810 1.672881 GATCGTGATTGCTTTGGGAGG 59.327 52.381 0.00 0.00 0.00 4.30
804 811 2.096496 GTGATCGTGATTGCTTTGGGAG 59.904 50.000 0.00 0.00 0.00 4.30
805 812 2.083774 GTGATCGTGATTGCTTTGGGA 58.916 47.619 0.00 0.00 0.00 4.37
806 813 1.811965 TGTGATCGTGATTGCTTTGGG 59.188 47.619 0.00 0.00 0.00 4.12
856 863 2.732468 CGCTGCTGGATCGATCGG 60.732 66.667 18.81 14.55 0.00 4.18
860 867 4.212913 GCCTCGCTGCTGGATCGA 62.213 66.667 11.77 0.00 0.00 3.59
886 893 6.639686 GTGACAGGCAAATATGAGCAAATATG 59.360 38.462 2.54 0.00 0.00 1.78
887 894 6.513884 CGTGACAGGCAAATATGAGCAAATAT 60.514 38.462 2.54 0.00 0.00 1.28
888 895 5.220835 CGTGACAGGCAAATATGAGCAAATA 60.221 40.000 2.54 0.00 0.00 1.40
890 897 3.119884 CGTGACAGGCAAATATGAGCAAA 60.120 43.478 2.54 0.00 0.00 3.68
891 898 2.419673 CGTGACAGGCAAATATGAGCAA 59.580 45.455 2.54 0.00 0.00 3.91
892 899 2.009051 CGTGACAGGCAAATATGAGCA 58.991 47.619 2.54 0.00 0.00 4.26
893 900 1.331756 CCGTGACAGGCAAATATGAGC 59.668 52.381 0.00 0.00 0.00 4.26
895 902 3.558931 ATCCGTGACAGGCAAATATGA 57.441 42.857 0.00 0.00 0.00 2.15
896 903 3.243168 CCAATCCGTGACAGGCAAATATG 60.243 47.826 0.00 0.00 0.00 1.78
897 904 2.951642 CCAATCCGTGACAGGCAAATAT 59.048 45.455 0.00 0.00 0.00 1.28
898 905 2.364632 CCAATCCGTGACAGGCAAATA 58.635 47.619 0.00 0.00 0.00 1.40
899 906 1.176527 CCAATCCGTGACAGGCAAAT 58.823 50.000 0.00 0.00 0.00 2.32
900 907 0.893270 CCCAATCCGTGACAGGCAAA 60.893 55.000 0.00 0.00 0.00 3.68
903 910 1.745489 GACCCAATCCGTGACAGGC 60.745 63.158 0.00 0.00 0.00 4.85
904 911 0.253044 ATGACCCAATCCGTGACAGG 59.747 55.000 0.00 0.00 0.00 4.00
905 912 1.739466 CAATGACCCAATCCGTGACAG 59.261 52.381 0.00 0.00 0.00 3.51
906 913 1.349357 TCAATGACCCAATCCGTGACA 59.651 47.619 0.00 0.00 0.00 3.58
907 914 2.107950 TCAATGACCCAATCCGTGAC 57.892 50.000 0.00 0.00 0.00 3.67
908 915 2.421388 GGATCAATGACCCAATCCGTGA 60.421 50.000 0.00 0.00 0.00 4.35
909 916 1.949525 GGATCAATGACCCAATCCGTG 59.050 52.381 0.00 0.00 0.00 4.94
910 917 1.846439 AGGATCAATGACCCAATCCGT 59.154 47.619 0.00 0.00 42.09 4.69
919 1071 6.410540 AGTAAAACTGGAGAGGATCAATGAC 58.589 40.000 0.00 0.00 37.82 3.06
928 1080 3.195825 ACATCGGAGTAAAACTGGAGAGG 59.804 47.826 0.00 0.00 0.00 3.69
950 1102 6.715280 ACTGCAAAGAGAAGAAGGATGAATA 58.285 36.000 0.00 0.00 0.00 1.75
951 1103 5.568392 ACTGCAAAGAGAAGAAGGATGAAT 58.432 37.500 0.00 0.00 0.00 2.57
953 1105 4.630644 ACTGCAAAGAGAAGAAGGATGA 57.369 40.909 0.00 0.00 0.00 2.92
954 1106 4.155644 GGAACTGCAAAGAGAAGAAGGATG 59.844 45.833 0.00 0.00 0.00 3.51
955 1107 4.202503 TGGAACTGCAAAGAGAAGAAGGAT 60.203 41.667 0.00 0.00 0.00 3.24
957 1109 3.480470 TGGAACTGCAAAGAGAAGAAGG 58.520 45.455 0.00 0.00 0.00 3.46
958 1110 4.133078 ACTGGAACTGCAAAGAGAAGAAG 58.867 43.478 0.00 0.00 0.00 2.85
960 1112 3.845781 ACTGGAACTGCAAAGAGAAGA 57.154 42.857 0.00 0.00 0.00 2.87
961 1113 4.096984 ACAAACTGGAACTGCAAAGAGAAG 59.903 41.667 0.00 0.00 0.00 2.85
964 1116 3.243201 GGACAAACTGGAACTGCAAAGAG 60.243 47.826 0.00 0.00 0.00 2.85
996 1158 4.489771 CTCCGTGACCCCATGCCC 62.490 72.222 0.00 0.00 0.00 5.36
1151 1313 4.096003 CGCCGGTGAATCCCTGGT 62.096 66.667 10.20 0.00 0.00 4.00
1184 1346 3.197790 CATCGTCCCTTGGCTGCG 61.198 66.667 0.00 0.00 0.00 5.18
1371 1533 2.366167 ATCGCTTCCTGGGGCTCT 60.366 61.111 9.93 0.00 0.00 4.09
1372 1534 2.110006 GATCGCTTCCTGGGGCTC 59.890 66.667 9.93 0.00 0.00 4.70
1375 1543 4.241555 CGGGATCGCTTCCTGGGG 62.242 72.222 8.28 0.00 45.94 4.96
1448 1664 2.674380 CCTTCACCAGGCACCTGC 60.674 66.667 11.39 0.00 42.35 4.85
1461 1677 1.469767 GCGATGAAATGGTTGGCCTTC 60.470 52.381 3.32 0.00 35.27 3.46
1488 1704 1.679898 GTGGAGGTCCTTGTCTGGG 59.320 63.158 0.00 0.00 36.82 4.45
1491 1707 0.104934 AGTGGTGGAGGTCCTTGTCT 60.105 55.000 0.00 0.00 36.82 3.41
1574 1815 2.679837 CCAAATTCAGATCAGGACCGTG 59.320 50.000 0.00 0.00 0.00 4.94
1577 1818 3.200825 TCTCCCAAATTCAGATCAGGACC 59.799 47.826 0.00 0.00 0.00 4.46
1584 1825 2.579860 ACCTGCTCTCCCAAATTCAGAT 59.420 45.455 0.00 0.00 0.00 2.90
1585 1826 1.988107 ACCTGCTCTCCCAAATTCAGA 59.012 47.619 0.00 0.00 0.00 3.27
1586 1827 2.503895 ACCTGCTCTCCCAAATTCAG 57.496 50.000 0.00 0.00 0.00 3.02
1587 1828 2.978156 AACCTGCTCTCCCAAATTCA 57.022 45.000 0.00 0.00 0.00 2.57
1588 1829 2.162408 CGAAACCTGCTCTCCCAAATTC 59.838 50.000 0.00 0.00 0.00 2.17
1590 1831 1.351017 TCGAAACCTGCTCTCCCAAAT 59.649 47.619 0.00 0.00 0.00 2.32
1592 1833 0.984230 ATCGAAACCTGCTCTCCCAA 59.016 50.000 0.00 0.00 0.00 4.12
1593 1834 0.537188 GATCGAAACCTGCTCTCCCA 59.463 55.000 0.00 0.00 0.00 4.37
1594 1835 0.537188 TGATCGAAACCTGCTCTCCC 59.463 55.000 0.00 0.00 0.00 4.30
1595 1836 1.205893 AGTGATCGAAACCTGCTCTCC 59.794 52.381 0.00 0.00 0.00 3.71
1596 1837 2.535331 GAGTGATCGAAACCTGCTCTC 58.465 52.381 0.00 0.00 0.00 3.20
1598 1839 1.646189 GGAGTGATCGAAACCTGCTC 58.354 55.000 0.00 0.00 0.00 4.26
1599 1840 0.108615 CGGAGTGATCGAAACCTGCT 60.109 55.000 0.00 0.00 0.00 4.24
1824 2076 2.206576 ATGGACTGTGAAAAGGGAGC 57.793 50.000 0.00 0.00 0.00 4.70
1825 2077 8.525290 AATAAATATGGACTGTGAAAAGGGAG 57.475 34.615 0.00 0.00 0.00 4.30
1826 2078 8.336235 AGAATAAATATGGACTGTGAAAAGGGA 58.664 33.333 0.00 0.00 0.00 4.20
1827 2079 8.408601 CAGAATAAATATGGACTGTGAAAAGGG 58.591 37.037 0.00 0.00 0.00 3.95
1830 2082 7.147915 GGGCAGAATAAATATGGACTGTGAAAA 60.148 37.037 0.00 0.00 0.00 2.29
1854 2106 0.692419 AGCACATAGAGACCAGGGGG 60.692 60.000 0.00 0.00 41.29 5.40
1892 2147 3.056607 CCTGCATTGAAGGGAACGAAAAT 60.057 43.478 2.24 0.00 0.00 1.82
1896 2151 0.960364 GCCTGCATTGAAGGGAACGA 60.960 55.000 12.87 0.00 35.17 3.85
1897 2152 1.508088 GCCTGCATTGAAGGGAACG 59.492 57.895 12.87 0.00 35.17 3.95
1898 2153 1.508088 CGCCTGCATTGAAGGGAAC 59.492 57.895 12.87 0.00 35.17 3.62
1910 2166 1.997928 GAAATTCCTCTGCCGCCTGC 61.998 60.000 0.00 0.00 41.77 4.85
2098 2361 3.807622 TCATTTCTGAAACGACCACTGTC 59.192 43.478 4.73 0.00 38.18 3.51
2103 2366 4.066646 TCAGTCATTTCTGAAACGACCA 57.933 40.909 21.52 9.39 40.82 4.02
2141 2414 3.785505 GCGCATATCTGACAGAAAAACCG 60.786 47.826 9.70 9.82 0.00 4.44
2152 2425 2.221169 GTCCAAATGGCGCATATCTGA 58.779 47.619 10.83 0.00 34.44 3.27
2303 2576 3.385111 ACGATATGAAGGGTTGAGAGGTC 59.615 47.826 0.00 0.00 0.00 3.85
2313 2586 5.056480 TGCAGAACAATACGATATGAAGGG 58.944 41.667 0.00 0.00 0.00 3.95
2344 2619 9.762381 TGGAACAGGTAATAAATCCAAAGTAAT 57.238 29.630 0.00 0.00 34.21 1.89
2365 2640 8.424274 AAACACATTTTTCTCTCAAATGGAAC 57.576 30.769 9.54 0.00 43.27 3.62
2408 2685 3.677601 CTGACATATCTGCAAAAGCACG 58.322 45.455 0.00 0.00 0.00 5.34
2431 2708 3.076621 CAGTGGCTCAATGAAAGCTGTA 58.923 45.455 0.00 0.00 39.75 2.74
2450 2727 2.998670 CGGCATAATCTATCACAGGCAG 59.001 50.000 0.00 0.00 0.00 4.85
2479 2756 1.667724 GAATGGATGTCAGAACGCAGG 59.332 52.381 0.00 0.00 0.00 4.85
2561 2838 4.042187 ACCCACACTTTATTTGCTCTCTCT 59.958 41.667 0.00 0.00 0.00 3.10
2562 2839 4.327680 ACCCACACTTTATTTGCTCTCTC 58.672 43.478 0.00 0.00 0.00 3.20
2563 2840 4.373156 ACCCACACTTTATTTGCTCTCT 57.627 40.909 0.00 0.00 0.00 3.10
2564 2841 5.241728 AGAAACCCACACTTTATTTGCTCTC 59.758 40.000 0.00 0.00 0.00 3.20
2577 2858 1.967319 TCAGCTCAAGAAACCCACAC 58.033 50.000 0.00 0.00 0.00 3.82
2603 2884 5.687285 CAGTTTTTGAACACTAGGCATTGAC 59.313 40.000 0.00 0.00 0.00 3.18
2614 2895 5.807011 AGCACAGAAATCAGTTTTTGAACAC 59.193 36.000 0.00 0.00 39.77 3.32
2669 2951 5.845065 AGTAACTTCCACCTTTACTCCTCTT 59.155 40.000 0.00 0.00 31.75 2.85
2714 2996 4.341520 GTCAGACCAGATATCCGGTACTTT 59.658 45.833 10.72 0.00 34.99 2.66
2801 3083 6.608808 AGAATATAGCAAGCAGGGTTCATTTT 59.391 34.615 0.00 0.00 0.00 1.82
2826 3108 7.099266 TGAAGAAAAACAGAGCATTTTCAGA 57.901 32.000 12.01 0.00 44.24 3.27
2836 3118 2.030893 TGCGGCATGAAGAAAAACAGAG 60.031 45.455 0.00 0.00 0.00 3.35
3045 3328 7.355017 CGGTCAGAACACATATCCAAATAATG 58.645 38.462 0.00 0.00 0.00 1.90
3046 3329 6.486657 CCGGTCAGAACACATATCCAAATAAT 59.513 38.462 0.00 0.00 0.00 1.28
3047 3330 5.820423 CCGGTCAGAACACATATCCAAATAA 59.180 40.000 0.00 0.00 0.00 1.40
3050 3333 3.262151 TCCGGTCAGAACACATATCCAAA 59.738 43.478 0.00 0.00 0.00 3.28
3051 3334 2.835156 TCCGGTCAGAACACATATCCAA 59.165 45.455 0.00 0.00 0.00 3.53
3052 3335 2.430694 CTCCGGTCAGAACACATATCCA 59.569 50.000 0.00 0.00 0.00 3.41
3053 3336 2.431057 ACTCCGGTCAGAACACATATCC 59.569 50.000 0.00 0.00 0.00 2.59
3054 3337 3.802948 ACTCCGGTCAGAACACATATC 57.197 47.619 0.00 0.00 0.00 1.63
3055 3338 3.513912 TCAACTCCGGTCAGAACACATAT 59.486 43.478 0.00 0.00 0.00 1.78
3056 3339 2.894765 TCAACTCCGGTCAGAACACATA 59.105 45.455 0.00 0.00 0.00 2.29
3057 3340 1.691976 TCAACTCCGGTCAGAACACAT 59.308 47.619 0.00 0.00 0.00 3.21
3058 3341 1.068588 CTCAACTCCGGTCAGAACACA 59.931 52.381 0.00 0.00 0.00 3.72
3059 3342 1.784525 CTCAACTCCGGTCAGAACAC 58.215 55.000 0.00 0.00 0.00 3.32
3070 3353 2.147150 GACCTGAACAAGCTCAACTCC 58.853 52.381 0.00 0.00 0.00 3.85
3150 3433 3.837146 ACTGACATGTCTCATCCAAGAGT 59.163 43.478 25.55 14.35 36.97 3.24
3281 3564 2.091885 ACAGAACAAAAGAAGAGGGGCA 60.092 45.455 0.00 0.00 0.00 5.36
3291 3575 8.472683 TGTGTTTCCAATAAACAGAACAAAAG 57.527 30.769 3.67 0.00 40.38 2.27
3323 3607 4.943705 TCCTCCTGATAAGCATTGTGTTTC 59.056 41.667 0.00 0.00 0.00 2.78
3530 3815 0.108186 TCTGTACAGCCAATGAGCCG 60.108 55.000 18.45 0.00 0.00 5.52
3558 3844 4.462483 TCAAGAGAAAAAGGCGGCATAAAT 59.538 37.500 13.08 0.00 0.00 1.40
3624 3952 3.981071 TCCATTGACCAACTCTAGGTG 57.019 47.619 0.00 0.00 40.09 4.00
3640 3968 9.071276 GTGATTACCTTGTTCATCATATTCCAT 57.929 33.333 0.00 0.00 0.00 3.41
3682 4010 3.609103 AAGATGCGTGAACTTTGTGAC 57.391 42.857 0.00 0.00 0.00 3.67
3696 4024 1.269448 TGCTCCCGAAACAAAAGATGC 59.731 47.619 0.00 0.00 0.00 3.91
3761 4089 8.425237 AGGCTACTTTAGAGACTTTAGAGTTT 57.575 34.615 2.07 0.00 35.88 2.66
3770 4098 5.827797 CAGAGATGAGGCTACTTTAGAGACT 59.172 44.000 0.00 0.00 33.85 3.24
3771 4099 5.825679 TCAGAGATGAGGCTACTTTAGAGAC 59.174 44.000 0.00 0.00 0.00 3.36
3772 4100 6.007485 TCAGAGATGAGGCTACTTTAGAGA 57.993 41.667 0.00 0.00 0.00 3.10
3773 4101 6.899393 ATCAGAGATGAGGCTACTTTAGAG 57.101 41.667 0.00 0.00 0.00 2.43
3774 4102 7.750655 TCTATCAGAGATGAGGCTACTTTAGA 58.249 38.462 0.00 0.00 0.00 2.10
3775 4103 7.994425 TCTATCAGAGATGAGGCTACTTTAG 57.006 40.000 0.00 0.00 0.00 1.85
3826 4154 6.805713 TCAATCTTCAGTTGGTTTCCTTTTC 58.194 36.000 0.00 0.00 0.00 2.29
3830 4158 5.656416 TGTTTCAATCTTCAGTTGGTTTCCT 59.344 36.000 0.00 0.00 0.00 3.36
3833 4161 9.313118 GTATTTGTTTCAATCTTCAGTTGGTTT 57.687 29.630 0.00 0.00 0.00 3.27
3859 4187 3.003689 CACAAAGTCTAACTGGCAGGTTG 59.996 47.826 20.34 14.02 0.00 3.77
3860 4188 3.214328 CACAAAGTCTAACTGGCAGGTT 58.786 45.455 20.34 12.77 0.00 3.50
3861 4189 2.851195 CACAAAGTCTAACTGGCAGGT 58.149 47.619 20.34 16.10 0.00 4.00
3862 4190 1.537202 GCACAAAGTCTAACTGGCAGG 59.463 52.381 20.34 0.62 0.00 4.85
3863 4191 1.537202 GGCACAAAGTCTAACTGGCAG 59.463 52.381 14.16 14.16 0.00 4.85
3867 4195 2.293399 GGTTGGGCACAAAGTCTAACTG 59.707 50.000 1.02 0.00 42.31 3.16
3960 4288 3.559655 TGTTGACATGCACAGTACTGTTC 59.440 43.478 25.89 21.44 42.83 3.18
3962 4290 3.133691 CTGTTGACATGCACAGTACTGT 58.866 45.455 22.95 22.95 46.17 3.55
4023 4352 1.317613 TGACGAAGCTTGCCAACATT 58.682 45.000 2.10 0.00 0.00 2.71
4041 4370 1.863454 CTAGCTGGAAAGCTGCGTATG 59.137 52.381 10.43 0.00 45.81 2.39
4074 4403 3.152341 AGATCAAAACCAGGAGTTGCTG 58.848 45.455 0.00 0.00 39.19 4.41
4079 4408 5.241728 GCAAAAGTAGATCAAAACCAGGAGT 59.758 40.000 0.00 0.00 0.00 3.85
4127 4468 1.428869 AAGGCACAGTCTGACTTCCT 58.571 50.000 7.77 11.71 46.40 3.36
4138 4479 3.120060 GCAACTCAACAGATAAGGCACAG 60.120 47.826 0.00 0.00 0.00 3.66
4139 4480 2.813754 GCAACTCAACAGATAAGGCACA 59.186 45.455 0.00 0.00 0.00 4.57
4140 4481 2.813754 TGCAACTCAACAGATAAGGCAC 59.186 45.455 0.00 0.00 0.00 5.01
4156 4508 5.107143 ACTCATTTGTTTTGTGTTGTGCAAC 60.107 36.000 8.01 8.01 41.50 4.17
4190 4544 7.535489 AGAACTGTCAGTTACAAAACACTAC 57.465 36.000 18.17 1.80 38.80 2.73
4259 4613 5.299949 CAATCAACTTTCAGGGGGAAAAAG 58.700 41.667 0.00 0.00 44.52 2.27
4265 4619 2.309136 ACCAATCAACTTTCAGGGGG 57.691 50.000 0.00 0.00 0.00 5.40
4277 4631 2.622942 GGTCAGTGCTGAAAACCAATCA 59.377 45.455 3.19 0.00 41.85 2.57
4405 5206 0.390340 TGACGCACATCCAGCTTCTC 60.390 55.000 0.00 0.00 32.17 2.87
4450 5251 1.160137 GGCAGAAATCACGAGCAAGT 58.840 50.000 0.00 0.00 0.00 3.16
4471 5272 0.524862 GGCACATCTGAGCAAGTTGG 59.475 55.000 4.75 0.00 33.19 3.77
4590 5403 6.031751 AGAAGACTCAAGTACAAAGCCTAG 57.968 41.667 0.00 0.00 0.00 3.02
4836 5651 4.790765 AAACTTAGGAAGGCTGCATTTC 57.209 40.909 0.00 0.00 0.00 2.17
4844 5659 3.188667 GTGCACAGTAAACTTAGGAAGGC 59.811 47.826 13.17 0.00 0.00 4.35
4863 5679 5.702865 AGTGTAACAATGAACATCATGTGC 58.297 37.500 0.00 0.00 41.43 4.57
4864 5680 8.506437 AGTAAGTGTAACAATGAACATCATGTG 58.494 33.333 0.00 0.00 41.43 3.21
4894 5741 7.719193 TCAGATCACCTAGACTCAGATAAAGAG 59.281 40.741 0.00 0.00 39.04 2.85
4906 5753 1.846541 GCGCTTCAGATCACCTAGAC 58.153 55.000 0.00 0.00 0.00 2.59
4907 5754 0.382158 CGCGCTTCAGATCACCTAGA 59.618 55.000 5.56 0.00 0.00 2.43
4958 5805 0.512952 CCTGCTTCGTACAACAGCAC 59.487 55.000 6.54 0.00 38.65 4.40
5041 5888 2.071778 AAACAACATGAGGGCACACT 57.928 45.000 0.00 0.00 0.00 3.55
5042 5889 2.888834 AAAACAACATGAGGGCACAC 57.111 45.000 0.00 0.00 0.00 3.82
5043 5890 3.030291 AGAAAAACAACATGAGGGCACA 58.970 40.909 0.00 0.00 0.00 4.57
5044 5891 3.733443 AGAAAAACAACATGAGGGCAC 57.267 42.857 0.00 0.00 0.00 5.01
5154 6010 2.509786 GGGATACGCCGCGACAAA 60.510 61.111 21.79 1.93 37.63 2.83
5276 6132 6.633325 AGAACAGGTAGTCAGGTACTAGTA 57.367 41.667 0.00 0.00 41.42 1.82
5277 6133 5.517620 AGAACAGGTAGTCAGGTACTAGT 57.482 43.478 0.00 0.00 41.42 2.57
5413 6279 1.003696 GCCTGAGCAGAAACTAACCCT 59.996 52.381 0.00 0.00 39.53 4.34
5679 6569 0.464373 ACAGCACAAGACCTGGTGTG 60.464 55.000 2.82 7.88 46.09 3.82
5705 6595 1.450312 GAAGACGGGGCATCAGTGG 60.450 63.158 0.00 0.00 0.00 4.00
5717 6607 3.318017 CCTGACAAAGGTGTAGAAGACG 58.682 50.000 0.00 0.00 41.74 4.18
5822 6716 8.070034 TGAGTACGGATAAATAAAGAACTGGA 57.930 34.615 0.00 0.00 0.00 3.86
5823 6717 8.195436 TCTGAGTACGGATAAATAAAGAACTGG 58.805 37.037 0.00 0.00 0.00 4.00
5824 6718 9.751542 ATCTGAGTACGGATAAATAAAGAACTG 57.248 33.333 0.00 0.00 39.97 3.16
5825 6719 9.751542 CATCTGAGTACGGATAAATAAAGAACT 57.248 33.333 0.00 0.00 39.79 3.01
5914 6808 2.949177 AAGTCACATGTGGCTGGTAA 57.051 45.000 32.34 5.32 46.11 2.85
5926 6820 3.130633 CTGAACCACGATGAAAGTCACA 58.869 45.455 0.00 0.00 0.00 3.58
5980 6874 5.235186 GTCCATCGAGTTCTTATCATTGTGG 59.765 44.000 0.00 0.00 0.00 4.17
6295 7205 9.326489 TGCCCTAGAGACAATAGAATATTACAT 57.674 33.333 0.00 0.00 0.00 2.29
6296 7206 8.585881 GTGCCCTAGAGACAATAGAATATTACA 58.414 37.037 0.00 0.00 0.00 2.41
6297 7207 8.035984 GGTGCCCTAGAGACAATAGAATATTAC 58.964 40.741 0.00 0.00 0.00 1.89
6304 7214 3.300388 CTGGTGCCCTAGAGACAATAGA 58.700 50.000 0.00 0.00 0.00 1.98
6307 7222 0.543749 GCTGGTGCCCTAGAGACAAT 59.456 55.000 0.00 0.00 0.00 2.71
6456 7376 6.261033 GCAGAAGCAACAAAAGTTAGAAAC 57.739 37.500 0.00 0.00 41.58 2.78
6527 7447 2.304180 ACTTTGACAGTGATCCCTGGAG 59.696 50.000 10.11 4.77 36.75 3.86
6573 7493 3.821033 AGGACACAAAGCAGTGGAAATAC 59.179 43.478 8.50 0.00 43.72 1.89
6840 7764 0.394938 TTCACGGGCTTCAGCAGTAA 59.605 50.000 0.30 0.00 44.36 2.24
6890 7814 0.038166 ACAATGACAAGGGGCGACAT 59.962 50.000 0.00 0.00 0.00 3.06
6951 7875 2.247437 GCATAGTAGGGCGCACTGC 61.247 63.158 25.64 23.29 45.38 4.40
6953 7877 1.443407 CAGCATAGTAGGGCGCACT 59.557 57.895 20.09 20.09 34.54 4.40
6954 7878 1.595382 CCAGCATAGTAGGGCGCAC 60.595 63.158 10.83 5.15 34.54 5.34
6955 7879 2.028125 GACCAGCATAGTAGGGCGCA 62.028 60.000 10.83 0.00 34.54 6.09
6956 7880 1.301009 GACCAGCATAGTAGGGCGC 60.301 63.158 0.00 0.00 34.54 6.53
6957 7881 1.617322 TAGACCAGCATAGTAGGGCG 58.383 55.000 0.00 0.00 34.90 6.13
6958 7882 2.354203 GCATAGACCAGCATAGTAGGGC 60.354 54.545 0.00 0.00 0.00 5.19
6960 7884 4.564041 CAAGCATAGACCAGCATAGTAGG 58.436 47.826 0.00 0.00 0.00 3.18
6961 7885 3.993081 GCAAGCATAGACCAGCATAGTAG 59.007 47.826 0.00 0.00 0.00 2.57
6979 7903 6.818644 ACACACATAGATGGTACTTAAGCAAG 59.181 38.462 1.29 0.00 39.48 4.01
7012 7936 3.664276 CGAGGTTCAACGTTTACAGCATG 60.664 47.826 0.00 0.00 46.00 4.06
7016 7940 3.378339 ACTCGAGGTTCAACGTTTACAG 58.622 45.455 18.41 0.00 0.00 2.74
7023 7947 4.046462 TCAAAAGTACTCGAGGTTCAACG 58.954 43.478 18.41 0.24 0.00 4.10
7044 7968 2.155279 GGTTTTCAAGCTCCAGACCTC 58.845 52.381 0.00 0.00 0.00 3.85
7065 7991 2.042831 GGCGTGGCTTGAATGCTCT 61.043 57.895 0.00 0.00 0.00 4.09
7082 8008 1.517242 AGAAGAAGAACAGCGCAAGG 58.483 50.000 11.47 0.14 38.28 3.61
7093 8019 9.454859 ACAAAAAGAAGAAGAAGAAGAAGAAGA 57.545 29.630 0.00 0.00 0.00 2.87
7095 8021 9.846248 CAACAAAAAGAAGAAGAAGAAGAAGAA 57.154 29.630 0.00 0.00 0.00 2.52
7096 8022 9.014297 ACAACAAAAAGAAGAAGAAGAAGAAGA 57.986 29.630 0.00 0.00 0.00 2.87
7097 8023 9.631452 AACAACAAAAAGAAGAAGAAGAAGAAG 57.369 29.630 0.00 0.00 0.00 2.85
7098 8024 9.981114 AAACAACAAAAAGAAGAAGAAGAAGAA 57.019 25.926 0.00 0.00 0.00 2.52
7099 8025 9.981114 AAAACAACAAAAAGAAGAAGAAGAAGA 57.019 25.926 0.00 0.00 0.00 2.87
7119 8045 8.635765 AGAGCCAAGTGATCTTAATAAAACAA 57.364 30.769 0.00 0.00 32.07 2.83
7122 8048 9.561069 GGATAGAGCCAAGTGATCTTAATAAAA 57.439 33.333 0.00 0.00 32.07 1.52
7127 8053 5.070981 CCAGGATAGAGCCAAGTGATCTTAA 59.929 44.000 0.00 0.00 32.07 1.85
7131 8057 2.703007 ACCAGGATAGAGCCAAGTGATC 59.297 50.000 0.00 0.00 0.00 2.92
7164 8090 2.570169 CAAACTTACACCGCACATTCG 58.430 47.619 0.00 0.00 0.00 3.34
7195 8143 2.923121 AGCTTCAGAAACAGTTGCAGA 58.077 42.857 0.00 0.00 0.00 4.26
7199 8147 4.037858 AGCAAAGCTTCAGAAACAGTTG 57.962 40.909 0.00 0.00 33.89 3.16
7201 8149 4.455606 ACTAGCAAAGCTTCAGAAACAGT 58.544 39.130 0.00 0.00 40.44 3.55
7203 8151 6.055588 AGTAACTAGCAAAGCTTCAGAAACA 58.944 36.000 0.00 0.00 40.44 2.83
7221 8188 7.095695 ACACAACAACATAAAGCAAGTAACT 57.904 32.000 0.00 0.00 0.00 2.24
7306 8295 1.065926 TGTGAGCCCTGCACTCATTAG 60.066 52.381 8.57 0.00 45.40 1.73
7409 8398 2.224523 CCCTGTGTTCCTGTATGTGTGT 60.225 50.000 0.00 0.00 0.00 3.72
7416 8405 1.064003 ATGTGCCCTGTGTTCCTGTA 58.936 50.000 0.00 0.00 0.00 2.74
7572 8585 5.075493 ACAGCAAAAGAAGAATCAGGTCAT 58.925 37.500 0.00 0.00 0.00 3.06
7823 8838 2.640316 ACTGTTTCCAGGTGAAGACC 57.360 50.000 0.00 0.00 43.36 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.