Multiple sequence alignment - TraesCS6B01G466600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G466600 chr6B 100.000 6017 0 0 1 6017 716617145 716623161 0.000000e+00 11112.0
1 TraesCS6B01G466600 chr6B 86.429 140 18 1 136 274 515066210 515066071 1.040000e-32 152.0
2 TraesCS6B01G466600 chrUn 89.896 4731 307 73 635 5257 74821914 74817247 0.000000e+00 5930.0
3 TraesCS6B01G466600 chrUn 91.926 706 45 7 5305 6008 74817156 74816461 0.000000e+00 977.0
4 TraesCS6B01G466600 chr6D 89.067 4930 296 105 439 5277 471917221 471921998 0.000000e+00 5893.0
5 TraesCS6B01G466600 chr6D 92.724 591 40 3 5420 6008 471922003 471922592 0.000000e+00 850.0
6 TraesCS6B01G466600 chr4A 91.207 1956 128 24 2089 4032 741545960 741547883 0.000000e+00 2619.0
7 TraesCS6B01G466600 chr4A 89.883 1196 77 19 4024 5215 741548613 741549768 0.000000e+00 1498.0
8 TraesCS6B01G466600 chr4A 94.023 435 23 1 5574 6005 741565076 741565510 0.000000e+00 656.0
9 TraesCS6B01G466600 chr4A 89.172 157 15 2 5420 5575 741549789 741549944 1.710000e-45 195.0
10 TraesCS6B01G466600 chr7D 74.811 2243 427 98 2130 4328 635586234 635588382 0.000000e+00 885.0
11 TraesCS6B01G466600 chr1D 81.735 876 100 31 3149 4013 482925465 482924639 0.000000e+00 676.0
12 TraesCS6B01G466600 chr1D 84.838 277 33 4 2181 2457 482927316 482927049 2.760000e-68 270.0
13 TraesCS6B01G466600 chr1D 93.252 163 10 1 2771 2933 490938505 490938344 7.790000e-59 239.0
14 TraesCS6B01G466600 chr1D 90.361 166 16 0 1924 2089 490938894 490938729 1.020000e-52 219.0
15 TraesCS6B01G466600 chr1D 84.236 203 21 6 1322 1524 490939462 490939271 2.860000e-43 187.0
16 TraesCS6B01G466600 chr1D 81.481 216 25 5 2465 2680 490938708 490938508 4.830000e-36 163.0
17 TraesCS6B01G466600 chr1D 90.698 43 3 1 1341 1382 482927497 482927455 8.420000e-04 56.5
18 TraesCS6B01G466600 chr1A 82.865 712 88 16 2901 3602 579216374 579217061 5.160000e-170 608.0
19 TraesCS6B01G466600 chr1A 81.340 418 51 13 1384 1797 588912708 588912314 1.260000e-81 315.0
20 TraesCS6B01G466600 chr1A 84.345 313 34 10 3679 3982 579217109 579217415 5.900000e-75 292.0
21 TraesCS6B01G466600 chr1A 84.834 211 15 9 967 1162 588913053 588912845 4.760000e-46 196.0
22 TraesCS6B01G466600 chr2D 74.598 1492 303 55 2132 3596 518266517 518267959 2.420000e-163 586.0
23 TraesCS6B01G466600 chr2D 84.646 254 39 0 4075 4328 518268495 518268748 2.780000e-63 254.0
24 TraesCS6B01G466600 chr2D 85.161 155 23 0 4415 4569 518268818 518268972 6.240000e-35 159.0
25 TraesCS6B01G466600 chr2D 87.970 133 13 2 136 266 348192788 348192919 2.900000e-33 154.0
26 TraesCS6B01G466600 chr2D 86.429 140 15 3 136 271 336511266 336511127 3.760000e-32 150.0
27 TraesCS6B01G466600 chr1B 82.219 703 96 17 2903 3602 671247382 671246706 4.040000e-161 579.0
28 TraesCS6B01G466600 chr1B 88.112 143 13 2 1704 1846 683414401 683414263 3.730000e-37 167.0
29 TraesCS6B01G466600 chr2B 74.249 1499 299 61 2132 3596 610417030 610418475 3.170000e-152 549.0
30 TraesCS6B01G466600 chr2B 84.646 254 39 0 4075 4328 610419010 610419263 2.780000e-63 254.0
31 TraesCS6B01G466600 chr2B 88.816 152 17 0 4418 4569 610419336 610419487 2.860000e-43 187.0
32 TraesCS6B01G466600 chr7B 75.904 996 175 44 2631 3596 740035199 740034239 3.310000e-122 449.0
33 TraesCS6B01G466600 chr7B 83.260 227 38 0 2130 2356 740035669 740035443 6.110000e-50 209.0
34 TraesCS6B01G466600 chr7B 87.143 140 15 2 138 275 20046757 20046895 8.070000e-34 156.0
35 TraesCS6B01G466600 chr7B 87.786 131 14 1 138 266 2509072 2509202 1.040000e-32 152.0
36 TraesCS6B01G466600 chr7A 77.708 480 90 13 4096 4568 730298658 730298189 1.650000e-70 278.0
37 TraesCS6B01G466600 chr7A 77.570 428 70 19 2131 2555 730428564 730428160 1.010000e-57 235.0
38 TraesCS6B01G466600 chr2A 83.465 254 42 0 4075 4328 662341717 662341970 2.800000e-58 237.0
39 TraesCS6B01G466600 chr2A 76.066 422 70 24 4415 4818 662342047 662342455 2.210000e-44 191.0
40 TraesCS6B01G466600 chr3D 87.943 141 13 3 136 272 305314312 305314452 4.830000e-36 163.0
41 TraesCS6B01G466600 chr4D 87.970 133 14 1 136 266 496301612 496301744 8.070000e-34 156.0
42 TraesCS6B01G466600 chr5A 86.525 141 17 1 136 274 21421078 21421218 2.900000e-33 154.0
43 TraesCS6B01G466600 chr5D 85.235 149 15 5 136 277 232832372 232832224 4.860000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G466600 chr6B 716617145 716623161 6016 False 11112.000000 11112 100.000000 1 6017 1 chr6B.!!$F1 6016
1 TraesCS6B01G466600 chrUn 74816461 74821914 5453 True 3453.500000 5930 90.911000 635 6008 2 chrUn.!!$R1 5373
2 TraesCS6B01G466600 chr6D 471917221 471922592 5371 False 3371.500000 5893 90.895500 439 6008 2 chr6D.!!$F1 5569
3 TraesCS6B01G466600 chr4A 741545960 741549944 3984 False 1437.333333 2619 90.087333 2089 5575 3 chr4A.!!$F2 3486
4 TraesCS6B01G466600 chr7D 635586234 635588382 2148 False 885.000000 885 74.811000 2130 4328 1 chr7D.!!$F1 2198
5 TraesCS6B01G466600 chr1D 482924639 482927497 2858 True 334.166667 676 85.757000 1341 4013 3 chr1D.!!$R1 2672
6 TraesCS6B01G466600 chr1D 490938344 490939462 1118 True 202.000000 239 87.332500 1322 2933 4 chr1D.!!$R2 1611
7 TraesCS6B01G466600 chr1A 579216374 579217415 1041 False 450.000000 608 83.605000 2901 3982 2 chr1A.!!$F1 1081
8 TraesCS6B01G466600 chr1A 588912314 588913053 739 True 255.500000 315 83.087000 967 1797 2 chr1A.!!$R1 830
9 TraesCS6B01G466600 chr2D 518266517 518268972 2455 False 333.000000 586 81.468333 2132 4569 3 chr2D.!!$F2 2437
10 TraesCS6B01G466600 chr1B 671246706 671247382 676 True 579.000000 579 82.219000 2903 3602 1 chr1B.!!$R1 699
11 TraesCS6B01G466600 chr2B 610417030 610419487 2457 False 330.000000 549 82.570333 2132 4569 3 chr2B.!!$F1 2437
12 TraesCS6B01G466600 chr7B 740034239 740035669 1430 True 329.000000 449 79.582000 2130 3596 2 chr7B.!!$R1 1466
13 TraesCS6B01G466600 chr2A 662341717 662342455 738 False 214.000000 237 79.765500 4075 4818 2 chr2A.!!$F1 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 916 1.135717 CAGACAGCAGAGACAGAGACG 60.136 57.143 0.00 0.0 0.00 4.18 F
1106 1167 0.461961 AGCCGCTACCAGATGAAGAC 59.538 55.000 0.00 0.0 0.00 3.01 F
2154 2454 0.178961 GGTTTCAGGAGTGGGGCTTT 60.179 55.000 0.00 0.0 0.00 3.51 F
2538 2926 1.076265 GGGCCTGAATGTTACCCCC 60.076 63.158 0.84 0.0 34.23 5.40 F
3399 4693 1.757118 GCCAGTATGAGAGCCACTACA 59.243 52.381 0.00 0.0 39.69 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2451 0.251341 CACCCCACCCCTTCTCAAAG 60.251 60.0 0.00 0.00 0.00 2.77 R
2558 2946 1.084289 AGTTTAATGAAGGCGGTCGC 58.916 50.0 6.83 6.83 41.06 5.19 R
4046 6163 0.035317 TCAGTCACATGGTCAGTGCC 59.965 55.0 0.00 0.00 36.93 5.01 R
4202 6319 0.254462 TGCCATTGAGCGGGTTGATA 59.746 50.0 0.00 0.00 34.65 2.15 R
5380 7648 0.110010 GCCTTGCGCTGTTCTTCTTC 60.110 55.0 9.73 0.00 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.793259 ATATGGGAAACGATCAAAGTTATATGT 57.207 29.630 0.00 0.00 0.00 2.29
35 36 7.931578 TGGGAAACGATCAAAGTTATATGTT 57.068 32.000 0.00 0.00 0.00 2.71
36 37 9.621629 ATGGGAAACGATCAAAGTTATATGTTA 57.378 29.630 0.00 0.00 0.00 2.41
37 38 9.104965 TGGGAAACGATCAAAGTTATATGTTAG 57.895 33.333 0.00 0.00 0.00 2.34
38 39 9.321562 GGGAAACGATCAAAGTTATATGTTAGA 57.678 33.333 0.00 0.00 0.00 2.10
56 57 8.948401 ATGTTAGACAGATACTCATCCTACAT 57.052 34.615 0.00 0.00 0.00 2.29
57 58 8.397575 TGTTAGACAGATACTCATCCTACATC 57.602 38.462 0.00 0.00 0.00 3.06
58 59 7.173390 TGTTAGACAGATACTCATCCTACATCG 59.827 40.741 0.00 0.00 0.00 3.84
59 60 5.870706 AGACAGATACTCATCCTACATCGA 58.129 41.667 0.00 0.00 0.00 3.59
60 61 6.299922 AGACAGATACTCATCCTACATCGAA 58.700 40.000 0.00 0.00 0.00 3.71
61 62 6.773200 AGACAGATACTCATCCTACATCGAAA 59.227 38.462 0.00 0.00 0.00 3.46
62 63 6.976088 ACAGATACTCATCCTACATCGAAAG 58.024 40.000 0.00 0.00 0.00 2.62
63 64 5.861251 CAGATACTCATCCTACATCGAAAGC 59.139 44.000 0.00 0.00 0.00 3.51
64 65 3.085443 ACTCATCCTACATCGAAAGCG 57.915 47.619 0.00 0.00 39.35 4.68
77 78 3.168963 TCGAAAGCGATGTCTCTTTACG 58.831 45.455 0.00 5.08 42.51 3.18
78 79 2.279136 CGAAAGCGATGTCTCTTTACGG 59.721 50.000 0.00 0.00 40.82 4.02
79 80 3.508762 GAAAGCGATGTCTCTTTACGGA 58.491 45.455 0.00 0.00 31.77 4.69
80 81 3.802948 AAGCGATGTCTCTTTACGGAT 57.197 42.857 0.00 0.00 0.00 4.18
81 82 3.085443 AGCGATGTCTCTTTACGGATG 57.915 47.619 0.00 0.00 0.00 3.51
82 83 2.128035 GCGATGTCTCTTTACGGATGG 58.872 52.381 0.00 0.00 0.00 3.51
83 84 2.223735 GCGATGTCTCTTTACGGATGGA 60.224 50.000 0.00 0.00 0.00 3.41
84 85 3.737047 GCGATGTCTCTTTACGGATGGAA 60.737 47.826 0.00 0.00 0.00 3.53
85 86 4.045104 CGATGTCTCTTTACGGATGGAAG 58.955 47.826 0.00 0.00 0.00 3.46
86 87 3.887621 TGTCTCTTTACGGATGGAAGG 57.112 47.619 0.00 0.00 0.00 3.46
87 88 2.500098 TGTCTCTTTACGGATGGAAGGG 59.500 50.000 0.00 0.00 0.00 3.95
88 89 2.116238 TCTCTTTACGGATGGAAGGGG 58.884 52.381 0.00 0.00 0.00 4.79
89 90 1.141053 CTCTTTACGGATGGAAGGGGG 59.859 57.143 0.00 0.00 0.00 5.40
177 178 8.801715 AAACTACATACAAAGCAAAATGAGTG 57.198 30.769 0.00 0.00 0.00 3.51
178 179 7.744087 ACTACATACAAAGCAAAATGAGTGA 57.256 32.000 0.00 0.00 0.00 3.41
179 180 8.165239 ACTACATACAAAGCAAAATGAGTGAA 57.835 30.769 0.00 0.00 0.00 3.18
180 181 8.796475 ACTACATACAAAGCAAAATGAGTGAAT 58.204 29.630 0.00 0.00 0.00 2.57
181 182 9.282247 CTACATACAAAGCAAAATGAGTGAATC 57.718 33.333 0.00 0.00 0.00 2.52
182 183 7.660112 ACATACAAAGCAAAATGAGTGAATCA 58.340 30.769 0.00 0.00 43.70 2.57
183 184 8.143193 ACATACAAAGCAAAATGAGTGAATCAA 58.857 29.630 0.00 0.00 42.53 2.57
184 185 6.833342 ACAAAGCAAAATGAGTGAATCAAC 57.167 33.333 0.00 0.00 42.53 3.18
185 186 6.339730 ACAAAGCAAAATGAGTGAATCAACA 58.660 32.000 0.00 0.00 42.53 3.33
186 187 6.256321 ACAAAGCAAAATGAGTGAATCAACAC 59.744 34.615 0.00 0.00 42.53 3.32
200 201 9.950496 AGTGAATCAACACTCTAAAATATGTCT 57.050 29.630 0.00 0.00 46.36 3.41
225 226 4.753186 ACATCCTTATGTAGTCCCTAGGG 58.247 47.826 23.22 23.22 44.66 3.53
226 227 4.422592 ACATCCTTATGTAGTCCCTAGGGA 59.577 45.833 27.73 27.73 44.66 4.20
227 228 5.102783 ACATCCTTATGTAGTCCCTAGGGAA 60.103 44.000 32.73 17.49 44.41 3.97
228 229 6.586633 ACATCCTTATGTAGTCCCTAGGGAAA 60.587 42.308 32.73 20.33 44.41 3.13
229 230 7.869488 ACATCCTTATGTAGTCCCTAGGGAAAT 60.869 40.741 32.73 24.62 44.41 2.17
241 242 7.889073 AGTCCCTAGGGAAATCTTTAAAAAGAC 59.111 37.037 32.73 14.05 45.60 3.01
242 243 7.889073 GTCCCTAGGGAAATCTTTAAAAAGACT 59.111 37.037 32.73 3.21 45.60 3.24
243 244 8.453681 TCCCTAGGGAAATCTTTAAAAAGACTT 58.546 33.333 29.24 3.18 43.40 3.01
244 245 9.749340 CCCTAGGGAAATCTTTAAAAAGACTTA 57.251 33.333 24.99 0.00 41.79 2.24
276 277 9.981460 AGAAATAGAGGGAGTAATTGATTTGTT 57.019 29.630 0.00 0.00 0.00 2.83
279 280 8.753497 ATAGAGGGAGTAATTGATTTGTTTCC 57.247 34.615 0.00 0.00 0.00 3.13
280 281 6.552008 AGAGGGAGTAATTGATTTGTTTCCA 58.448 36.000 0.00 0.00 0.00 3.53
281 282 6.660949 AGAGGGAGTAATTGATTTGTTTCCAG 59.339 38.462 0.00 0.00 0.00 3.86
282 283 5.716703 AGGGAGTAATTGATTTGTTTCCAGG 59.283 40.000 0.00 0.00 0.00 4.45
283 284 5.714806 GGGAGTAATTGATTTGTTTCCAGGA 59.285 40.000 0.00 0.00 0.00 3.86
284 285 6.127619 GGGAGTAATTGATTTGTTTCCAGGAG 60.128 42.308 0.00 0.00 0.00 3.69
285 286 6.434340 GGAGTAATTGATTTGTTTCCAGGAGT 59.566 38.462 0.00 0.00 0.00 3.85
286 287 7.039714 GGAGTAATTGATTTGTTTCCAGGAGTT 60.040 37.037 0.00 0.00 0.00 3.01
287 288 8.250143 AGTAATTGATTTGTTTCCAGGAGTTT 57.750 30.769 0.00 0.00 0.00 2.66
288 289 8.704668 AGTAATTGATTTGTTTCCAGGAGTTTT 58.295 29.630 0.00 0.00 0.00 2.43
289 290 9.325198 GTAATTGATTTGTTTCCAGGAGTTTTT 57.675 29.630 0.00 0.00 0.00 1.94
290 291 7.790823 ATTGATTTGTTTCCAGGAGTTTTTG 57.209 32.000 0.00 0.00 0.00 2.44
291 292 5.115480 TGATTTGTTTCCAGGAGTTTTTGC 58.885 37.500 0.00 0.00 0.00 3.68
292 293 4.543590 TTTGTTTCCAGGAGTTTTTGCA 57.456 36.364 0.00 0.00 0.00 4.08
293 294 3.518634 TGTTTCCAGGAGTTTTTGCAC 57.481 42.857 0.00 0.00 0.00 4.57
294 295 2.828520 TGTTTCCAGGAGTTTTTGCACA 59.171 40.909 0.00 0.00 0.00 4.57
295 296 3.450457 TGTTTCCAGGAGTTTTTGCACAT 59.550 39.130 0.00 0.00 0.00 3.21
296 297 4.081198 TGTTTCCAGGAGTTTTTGCACATT 60.081 37.500 0.00 0.00 0.00 2.71
297 298 4.751767 TTCCAGGAGTTTTTGCACATTT 57.248 36.364 0.00 0.00 0.00 2.32
298 299 4.320608 TCCAGGAGTTTTTGCACATTTC 57.679 40.909 0.00 0.00 0.00 2.17
299 300 3.960102 TCCAGGAGTTTTTGCACATTTCT 59.040 39.130 0.00 0.00 0.00 2.52
300 301 5.136828 TCCAGGAGTTTTTGCACATTTCTA 58.863 37.500 0.00 0.00 0.00 2.10
301 302 5.596361 TCCAGGAGTTTTTGCACATTTCTAA 59.404 36.000 0.00 0.00 0.00 2.10
302 303 6.267471 TCCAGGAGTTTTTGCACATTTCTAAT 59.733 34.615 0.00 0.00 0.00 1.73
303 304 7.450014 TCCAGGAGTTTTTGCACATTTCTAATA 59.550 33.333 0.00 0.00 0.00 0.98
304 305 8.253113 CCAGGAGTTTTTGCACATTTCTAATAT 58.747 33.333 0.00 0.00 0.00 1.28
401 402 9.936759 AGGAAAACAAATTCTAAACTTTTCACA 57.063 25.926 0.00 0.00 31.91 3.58
405 406 9.665719 AAACAAATTCTAAACTTTTCACATGGT 57.334 25.926 0.00 0.00 0.00 3.55
406 407 8.647143 ACAAATTCTAAACTTTTCACATGGTG 57.353 30.769 0.00 0.00 34.45 4.17
407 408 8.474025 ACAAATTCTAAACTTTTCACATGGTGA 58.526 29.630 0.00 0.00 41.09 4.02
419 420 5.578005 TCACATGGTGAACTAGTAGTAGC 57.422 43.478 2.50 0.00 39.78 3.58
420 421 4.401519 TCACATGGTGAACTAGTAGTAGCC 59.598 45.833 2.50 6.96 39.78 3.93
421 422 4.402793 CACATGGTGAACTAGTAGTAGCCT 59.597 45.833 2.50 0.00 35.23 4.58
422 423 5.593095 CACATGGTGAACTAGTAGTAGCCTA 59.407 44.000 2.50 0.00 35.23 3.93
423 424 6.096423 CACATGGTGAACTAGTAGTAGCCTAA 59.904 42.308 2.50 0.00 35.23 2.69
424 425 6.839657 ACATGGTGAACTAGTAGTAGCCTAAT 59.160 38.462 2.50 0.00 0.00 1.73
425 426 8.003044 ACATGGTGAACTAGTAGTAGCCTAATA 58.997 37.037 2.50 0.00 0.00 0.98
426 427 8.516234 CATGGTGAACTAGTAGTAGCCTAATAG 58.484 40.741 2.50 3.78 43.93 1.73
427 428 7.002879 TGGTGAACTAGTAGTAGCCTAATAGG 58.997 42.308 2.50 0.99 43.09 2.57
428 429 7.003482 GGTGAACTAGTAGTAGCCTAATAGGT 58.997 42.308 8.28 2.99 42.76 3.08
429 430 7.040548 GGTGAACTAGTAGTAGCCTAATAGGTG 60.041 44.444 8.28 0.00 40.78 4.00
430 431 6.489361 TGAACTAGTAGTAGCCTAATAGGTGC 59.511 42.308 8.28 0.00 40.78 5.01
431 432 5.950023 ACTAGTAGTAGCCTAATAGGTGCA 58.050 41.667 8.28 0.00 43.09 4.57
432 433 6.005198 ACTAGTAGTAGCCTAATAGGTGCAG 58.995 44.000 8.28 0.00 43.09 4.41
433 434 3.574826 AGTAGTAGCCTAATAGGTGCAGC 59.425 47.826 8.11 8.11 37.80 5.25
434 435 1.694696 AGTAGCCTAATAGGTGCAGCC 59.305 52.381 13.29 4.65 37.80 4.85
462 463 8.602472 AGTCCATAGAATACAAGACTCTTCTT 57.398 34.615 0.00 0.00 43.35 2.52
463 464 8.691797 AGTCCATAGAATACAAGACTCTTCTTC 58.308 37.037 0.00 0.00 40.34 2.87
464 465 8.691797 GTCCATAGAATACAAGACTCTTCTTCT 58.308 37.037 10.48 10.48 40.34 2.85
467 468 5.729510 AGAATACAAGACTCTTCTTCTGCC 58.270 41.667 6.86 0.00 40.34 4.85
524 525 5.338626 GCTAGCCTAGGTAAAAAGGTAACCA 60.339 44.000 11.31 0.00 35.64 3.67
525 526 5.791303 AGCCTAGGTAAAAAGGTAACCAT 57.209 39.130 11.31 0.00 35.64 3.55
526 527 5.506708 AGCCTAGGTAAAAAGGTAACCATG 58.493 41.667 11.31 0.00 35.64 3.66
527 528 5.252164 AGCCTAGGTAAAAAGGTAACCATGA 59.748 40.000 11.31 0.00 35.64 3.07
528 529 5.947566 GCCTAGGTAAAAAGGTAACCATGAA 59.052 40.000 11.31 0.00 35.64 2.57
529 530 6.605995 GCCTAGGTAAAAAGGTAACCATGAAT 59.394 38.462 11.31 0.00 35.64 2.57
530 531 7.201794 GCCTAGGTAAAAAGGTAACCATGAATC 60.202 40.741 11.31 0.00 35.64 2.52
531 532 8.053355 CCTAGGTAAAAAGGTAACCATGAATCT 58.947 37.037 0.00 0.00 35.64 2.40
559 560 7.896496 AGCTAGCTTAGTTATCTATACCACCAT 59.104 37.037 12.68 0.00 0.00 3.55
565 580 8.651589 TTAGTTATCTATACCACCATGAGAGG 57.348 38.462 0.00 0.00 0.00 3.69
566 581 6.019748 AGTTATCTATACCACCATGAGAGGG 58.980 44.000 0.00 0.00 0.00 4.30
574 589 3.019564 CCACCATGAGAGGGAACAAATC 58.980 50.000 0.00 0.00 0.00 2.17
576 591 3.944015 CACCATGAGAGGGAACAAATCTC 59.056 47.826 0.00 0.00 39.93 2.75
582 597 3.111484 AGAGGGAACAAATCTCCTCCTC 58.889 50.000 0.00 0.00 42.22 3.71
612 631 6.887626 TTTACACCCAGACAAGATTTAACC 57.112 37.500 0.00 0.00 0.00 2.85
613 632 4.447138 ACACCCAGACAAGATTTAACCA 57.553 40.909 0.00 0.00 0.00 3.67
615 634 5.205056 ACACCCAGACAAGATTTAACCAAA 58.795 37.500 0.00 0.00 0.00 3.28
617 636 4.277423 ACCCAGACAAGATTTAACCAAACG 59.723 41.667 0.00 0.00 0.00 3.60
622 641 7.138736 CAGACAAGATTTAACCAAACGTGAAT 58.861 34.615 0.00 0.00 0.00 2.57
626 645 9.974980 ACAAGATTTAACCAAACGTGAATATTT 57.025 25.926 0.00 0.00 0.00 1.40
665 684 3.634568 TTCGGTTGTGCATTTACAAGG 57.365 42.857 0.00 0.00 40.89 3.61
731 750 5.791974 CGAATCTTAATTATCTTGCATGGCG 59.208 40.000 0.00 0.00 0.00 5.69
735 754 6.954944 TCTTAATTATCTTGCATGGCGTAAC 58.045 36.000 0.00 0.00 0.00 2.50
810 829 3.010420 GCTTAAAGTGTCACCCATCCTC 58.990 50.000 0.00 0.00 0.00 3.71
888 916 1.135717 CAGACAGCAGAGACAGAGACG 60.136 57.143 0.00 0.00 0.00 4.18
945 979 3.856206 TCCTCCCCTTGCCTATAAACTTT 59.144 43.478 0.00 0.00 0.00 2.66
956 990 4.383010 GCCTATAAACTTTGCCTTGCCATT 60.383 41.667 0.00 0.00 0.00 3.16
960 994 3.665745 AACTTTGCCTTGCCATTACAG 57.334 42.857 0.00 0.00 0.00 2.74
1022 1078 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
1023 1079 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1024 1080 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1106 1167 0.461961 AGCCGCTACCAGATGAAGAC 59.538 55.000 0.00 0.00 0.00 3.01
1122 1183 3.335579 GAAGACGTGCTTCCAAAGGTAT 58.664 45.455 13.53 0.00 45.90 2.73
1123 1184 3.418684 AGACGTGCTTCCAAAGGTATT 57.581 42.857 0.00 0.00 0.00 1.89
1162 1275 7.814587 ACAAACACTCCTTTCTTTCTTTCTTTG 59.185 33.333 0.00 0.00 0.00 2.77
1176 1289 9.956720 CTTTCTTTCTTTGTCTGAAATGTATGT 57.043 29.630 0.00 0.00 33.65 2.29
1185 1298 7.446001 TGTCTGAAATGTATGTATGCAAACA 57.554 32.000 0.00 0.00 0.00 2.83
1220 1355 2.496899 TGGATCCTTCCTTGTTCTGC 57.503 50.000 14.23 0.00 43.07 4.26
1221 1356 1.704628 TGGATCCTTCCTTGTTCTGCA 59.295 47.619 14.23 0.00 43.07 4.41
1222 1357 2.087646 GGATCCTTCCTTGTTCTGCAC 58.912 52.381 3.84 0.00 39.14 4.57
1223 1358 2.290577 GGATCCTTCCTTGTTCTGCACT 60.291 50.000 3.84 0.00 39.14 4.40
1224 1359 2.260844 TCCTTCCTTGTTCTGCACTG 57.739 50.000 0.00 0.00 0.00 3.66
1474 1610 4.933064 GCCGAGGAGATCACGCCG 62.933 72.222 0.00 0.00 40.86 6.46
1524 1667 4.171005 CTCTACGACGAAAAATGGTGCTA 58.829 43.478 0.00 0.00 0.00 3.49
1526 1669 2.762745 ACGACGAAAAATGGTGCTACT 58.237 42.857 0.00 0.00 0.00 2.57
1527 1670 2.478894 ACGACGAAAAATGGTGCTACTG 59.521 45.455 0.00 0.00 0.00 2.74
1528 1671 2.724839 CGACGAAAAATGGTGCTACTGC 60.725 50.000 0.00 0.00 40.20 4.40
1750 2023 0.976073 TCTCCCGGTTCATGTCCTCC 60.976 60.000 0.00 0.00 0.00 4.30
1828 2101 2.438254 TACCGCGGCGAGGTAAGA 60.438 61.111 34.89 18.97 40.91 2.10
1833 2106 1.785951 GCGGCGAGGTAAGAAACAC 59.214 57.895 12.98 0.00 0.00 3.32
1843 2116 4.010349 AGGTAAGAAACACCTAAGCATGC 58.990 43.478 10.51 10.51 44.77 4.06
1844 2117 3.756434 GGTAAGAAACACCTAAGCATGCA 59.244 43.478 21.98 0.00 32.98 3.96
1845 2118 4.399303 GGTAAGAAACACCTAAGCATGCAT 59.601 41.667 21.98 11.22 32.98 3.96
1846 2119 4.445452 AAGAAACACCTAAGCATGCATG 57.555 40.909 22.70 22.70 0.00 4.06
1887 2160 1.153568 CGGCATGGTCAGTGTCGAT 60.154 57.895 0.00 0.00 46.80 3.59
1898 2181 4.106197 GTCAGTGTCGATGGTAGAATGAC 58.894 47.826 0.00 0.00 0.00 3.06
1901 2184 3.131223 AGTGTCGATGGTAGAATGACCTG 59.869 47.826 0.00 0.00 40.46 4.00
1972 2255 2.720758 CGCCGACAAGCTTCAGACG 61.721 63.158 0.00 0.00 0.00 4.18
1975 2258 2.720758 CGACAAGCTTCAGACGGCG 61.721 63.158 4.80 4.80 0.00 6.46
2151 2451 1.303643 CAGGTTTCAGGAGTGGGGC 60.304 63.158 0.00 0.00 0.00 5.80
2154 2454 0.178961 GGTTTCAGGAGTGGGGCTTT 60.179 55.000 0.00 0.00 0.00 3.51
2373 2674 4.021981 CAGGTACAGCGATCATTATCCAGA 60.022 45.833 0.00 0.00 0.00 3.86
2375 2676 5.247110 AGGTACAGCGATCATTATCCAGAAT 59.753 40.000 0.00 0.00 0.00 2.40
2409 2711 7.317722 AGATATAACCCTAAATCCACAGGTC 57.682 40.000 0.00 0.00 0.00 3.85
2538 2926 1.076265 GGGCCTGAATGTTACCCCC 60.076 63.158 0.84 0.00 34.23 5.40
2547 2935 4.855340 TGAATGTTACCCCCAAGATTCTC 58.145 43.478 7.10 0.00 38.41 2.87
2558 2946 3.684788 CCCAAGATTCTCGTGGTAAACTG 59.315 47.826 8.05 0.00 43.22 3.16
2598 2986 2.504367 ACCATGACCTAACACTGCAAC 58.496 47.619 0.00 0.00 0.00 4.17
2819 3222 4.042187 GGAGAGATATGCCCAGGTATGTTT 59.958 45.833 0.00 0.00 0.00 2.83
2835 3238 8.956426 CAGGTATGTTTCAGCTAGGAATTTTAA 58.044 33.333 0.00 0.00 0.00 1.52
3076 3488 3.864789 AACCTGTTCTTCTGTCACCAT 57.135 42.857 0.00 0.00 0.00 3.55
3093 3505 3.064408 CACCATCCAAATCTGACATCACG 59.936 47.826 0.00 0.00 0.00 4.35
3098 3510 5.147330 TCCAAATCTGACATCACGTTACT 57.853 39.130 0.00 0.00 0.00 2.24
3099 3511 4.929211 TCCAAATCTGACATCACGTTACTG 59.071 41.667 0.00 0.00 0.00 2.74
3254 4530 3.935203 CCATGAACACTAGCGACTTCATT 59.065 43.478 0.00 0.00 32.23 2.57
3323 4599 6.237332 CGTAAACTAAAATCAGTCTCTCAGCG 60.237 42.308 0.00 0.00 0.00 5.18
3399 4693 1.757118 GCCAGTATGAGAGCCACTACA 59.243 52.381 0.00 0.00 39.69 2.74
3428 4722 2.903357 CCAGGGCTGTGTCGCTAT 59.097 61.111 0.00 0.00 0.00 2.97
3796 5163 1.871080 ACGGTGAGAACAAGAAGCTG 58.129 50.000 0.00 0.00 0.00 4.24
3915 5283 2.234661 TGATGGACAAGTACCAGCTCAG 59.765 50.000 0.00 0.00 43.20 3.35
4046 6163 8.506437 TCAAATACAGTTAAGCATGAAACTCAG 58.494 33.333 0.00 0.00 33.72 3.35
4085 6202 2.671177 CCGTGTCTTTCAGCCTGCG 61.671 63.158 0.00 0.00 0.00 5.18
4202 6319 3.243128 CGAGGTTTCGGGTTTCCAT 57.757 52.632 0.00 0.00 43.05 3.41
4217 6334 3.576078 TTCCATATCAACCCGCTCAAT 57.424 42.857 0.00 0.00 0.00 2.57
4246 6363 1.135315 CAAGCGACAAGATTGCCGG 59.865 57.895 0.00 0.00 39.53 6.13
4310 6427 4.311700 TCCACTGCTGGACTCCAA 57.688 55.556 0.00 0.00 42.15 3.53
4329 6446 3.181475 CCAACGCATCTATGAGTGGTACT 60.181 47.826 0.00 0.00 39.93 2.73
4343 6484 6.946340 TGAGTGGTACTGTACAATCATCATT 58.054 36.000 18.79 4.23 36.86 2.57
4350 6491 9.817809 GGTACTGTACAATCATCATTCTAGAAA 57.182 33.333 18.79 0.00 0.00 2.52
4365 6506 9.361315 TCATTCTAGAAATCAAATGCATTTGTG 57.639 29.630 37.98 27.79 45.49 3.33
4366 6507 8.600625 CATTCTAGAAATCAAATGCATTTGTGG 58.399 33.333 37.98 25.70 45.49 4.17
4388 6529 6.583806 GTGGACACATTATGCTTTTTCTTCAG 59.416 38.462 0.00 0.00 0.00 3.02
4408 6549 9.651913 TCTTCAGAAAATATTTTAACAATGCCC 57.348 29.630 13.34 0.00 0.00 5.36
4632 6802 6.015918 ACCCCATTTTCACTGATGTCATTTA 58.984 36.000 0.00 0.00 0.00 1.40
4908 7089 5.075493 ACAGCAAAAGAAGAATCAGGTCAT 58.925 37.500 0.00 0.00 0.00 3.06
5064 7269 1.064003 ATGTGCCCTGTGTTCCTGTA 58.936 50.000 0.00 0.00 0.00 2.74
5071 7276 2.224523 CCCTGTGTTCCTGTATGTGTGT 60.225 50.000 0.00 0.00 0.00 3.72
5174 7379 1.065926 TGTGAGCCCTGCACTCATTAG 60.066 52.381 8.57 0.00 45.40 1.73
5259 7484 7.095695 ACACAACAACATAAAGCAAGTAACT 57.904 32.000 0.00 0.00 0.00 2.24
5277 7523 6.055588 AGTAACTAGCAAAGCTTCAGAAACA 58.944 36.000 0.00 0.00 40.44 2.83
5279 7525 4.455606 ACTAGCAAAGCTTCAGAAACAGT 58.544 39.130 0.00 0.00 40.44 3.55
5281 7527 4.037858 AGCAAAGCTTCAGAAACAGTTG 57.962 40.909 0.00 0.00 33.89 3.16
5285 7531 2.923121 AGCTTCAGAAACAGTTGCAGA 58.077 42.857 0.00 0.00 0.00 4.26
5316 7584 2.570169 CAAACTTACACCGCACATTCG 58.430 47.619 0.00 0.00 0.00 3.34
5349 7617 2.703007 ACCAGGATAGAGCCAAGTGATC 59.297 50.000 0.00 0.00 0.00 2.92
5353 7621 5.070981 CCAGGATAGAGCCAAGTGATCTTAA 59.929 44.000 0.00 0.00 32.07 1.85
5358 7626 9.561069 GGATAGAGCCAAGTGATCTTAATAAAA 57.439 33.333 0.00 0.00 32.07 1.52
5361 7629 8.635765 AGAGCCAAGTGATCTTAATAAAACAA 57.364 30.769 0.00 0.00 32.07 2.83
5381 7649 9.981114 AAAACAACAAAAAGAAGAAGAAGAAGA 57.019 25.926 0.00 0.00 0.00 2.87
5382 7650 9.981114 AAACAACAAAAAGAAGAAGAAGAAGAA 57.019 25.926 0.00 0.00 0.00 2.52
5383 7651 9.631452 AACAACAAAAAGAAGAAGAAGAAGAAG 57.369 29.630 0.00 0.00 0.00 2.85
5384 7652 9.014297 ACAACAAAAAGAAGAAGAAGAAGAAGA 57.986 29.630 0.00 0.00 0.00 2.87
5385 7653 9.846248 CAACAAAAAGAAGAAGAAGAAGAAGAA 57.154 29.630 0.00 0.00 0.00 2.52
5387 7655 9.454859 ACAAAAAGAAGAAGAAGAAGAAGAAGA 57.545 29.630 0.00 0.00 0.00 2.87
5398 7666 1.517242 AGAAGAAGAACAGCGCAAGG 58.483 50.000 11.47 0.14 38.28 3.61
5415 7683 2.042831 GGCGTGGCTTGAATGCTCT 61.043 57.895 0.00 0.00 0.00 4.09
5435 7703 1.494721 TGGTTTTCAAGCTCCAGACCT 59.505 47.619 0.00 0.00 0.00 3.85
5436 7704 2.155279 GGTTTTCAAGCTCCAGACCTC 58.845 52.381 0.00 0.00 0.00 3.85
5457 7727 4.046462 TCAAAAGTACTCGAGGTTCAACG 58.954 43.478 18.41 0.24 0.00 4.10
5464 7734 3.378339 ACTCGAGGTTCAACGTTTACAG 58.622 45.455 18.41 0.00 0.00 2.74
5468 7738 3.664276 CGAGGTTCAACGTTTACAGCATG 60.664 47.826 0.00 0.00 46.00 4.06
5501 7771 6.818644 ACACACATAGATGGTACTTAAGCAAG 59.181 38.462 1.29 0.00 39.48 4.01
5519 7789 3.993081 GCAAGCATAGACCAGCATAGTAG 59.007 47.826 0.00 0.00 0.00 2.57
5527 7797 1.443407 CAGCATAGTAGGGCGCACT 59.557 57.895 20.09 20.09 34.54 4.40
5528 7798 0.877649 CAGCATAGTAGGGCGCACTG 60.878 60.000 25.64 7.01 34.54 3.66
5529 7799 2.247437 GCATAGTAGGGCGCACTGC 61.247 63.158 25.64 23.29 45.38 4.40
5590 7860 0.038166 ACAATGACAAGGGGCGACAT 59.962 50.000 0.00 0.00 0.00 3.06
5593 7863 2.045926 GACAAGGGGCGACATGCT 60.046 61.111 0.00 0.00 45.43 3.79
5640 7910 0.394938 TTCACGGGCTTCAGCAGTAA 59.605 50.000 0.30 0.00 44.36 2.24
5667 7937 3.559655 TGACGTTCTTCACATTGTCCTTG 59.440 43.478 0.00 0.00 0.00 3.61
5670 7940 3.187227 CGTTCTTCACATTGTCCTTGAGG 59.813 47.826 0.00 0.00 0.00 3.86
5805 8075 2.482839 GCTCTCTGGCTCCATGTAGAAC 60.483 54.545 0.00 0.00 0.00 3.01
5900 8171 3.466836 TCAGTAAGGACACAAAGCAGTG 58.533 45.455 2.88 2.88 44.93 3.66
5907 8178 3.821033 AGGACACAAAGCAGTGGAAATAC 59.179 43.478 8.50 0.00 43.72 1.89
5953 8224 2.304180 ACTTTGACAGTGATCCCTGGAG 59.696 50.000 10.11 4.77 36.75 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.793259 ACATATAACTTTGATCGTTTCCCATAT 57.207 29.630 0.00 0.00 0.00 1.78
9 10 9.621629 AACATATAACTTTGATCGTTTCCCATA 57.378 29.630 0.00 0.00 0.00 2.74
10 11 8.519799 AACATATAACTTTGATCGTTTCCCAT 57.480 30.769 0.00 0.00 0.00 4.00
11 12 7.931578 AACATATAACTTTGATCGTTTCCCA 57.068 32.000 0.00 0.00 0.00 4.37
12 13 9.321562 TCTAACATATAACTTTGATCGTTTCCC 57.678 33.333 0.00 0.00 0.00 3.97
31 32 8.948401 ATGTAGGATGAGTATCTGTCTAACAT 57.052 34.615 0.00 0.00 34.92 2.71
32 33 7.173390 CGATGTAGGATGAGTATCTGTCTAACA 59.827 40.741 0.00 0.00 34.92 2.41
33 34 7.388224 TCGATGTAGGATGAGTATCTGTCTAAC 59.612 40.741 0.00 0.00 34.92 2.34
34 35 7.450903 TCGATGTAGGATGAGTATCTGTCTAA 58.549 38.462 0.00 0.00 34.92 2.10
35 36 7.005709 TCGATGTAGGATGAGTATCTGTCTA 57.994 40.000 0.00 0.00 34.92 2.59
36 37 5.870706 TCGATGTAGGATGAGTATCTGTCT 58.129 41.667 0.00 0.00 34.92 3.41
37 38 6.561737 TTCGATGTAGGATGAGTATCTGTC 57.438 41.667 0.00 0.00 34.92 3.51
38 39 6.515862 GCTTTCGATGTAGGATGAGTATCTGT 60.516 42.308 0.00 0.00 34.92 3.41
39 40 5.861251 GCTTTCGATGTAGGATGAGTATCTG 59.139 44.000 0.00 0.00 34.92 2.90
40 41 5.335269 CGCTTTCGATGTAGGATGAGTATCT 60.335 44.000 0.00 0.00 38.10 1.98
41 42 4.854291 CGCTTTCGATGTAGGATGAGTATC 59.146 45.833 0.00 0.00 38.10 2.24
42 43 4.519350 TCGCTTTCGATGTAGGATGAGTAT 59.481 41.667 0.00 0.00 40.21 2.12
43 44 3.881089 TCGCTTTCGATGTAGGATGAGTA 59.119 43.478 0.00 0.00 40.21 2.59
44 45 2.688446 TCGCTTTCGATGTAGGATGAGT 59.312 45.455 0.00 0.00 40.21 3.41
45 46 3.355626 TCGCTTTCGATGTAGGATGAG 57.644 47.619 0.00 0.00 40.21 2.90
57 58 2.279136 CCGTAAAGAGACATCGCTTTCG 59.721 50.000 13.01 14.66 43.24 3.46
58 59 3.508762 TCCGTAAAGAGACATCGCTTTC 58.491 45.455 13.01 5.92 43.24 2.62
59 60 3.587797 TCCGTAAAGAGACATCGCTTT 57.412 42.857 13.92 13.92 45.50 3.51
60 61 3.448686 CATCCGTAAAGAGACATCGCTT 58.551 45.455 0.00 0.00 37.60 4.68
61 62 2.223829 CCATCCGTAAAGAGACATCGCT 60.224 50.000 0.00 0.00 0.00 4.93
62 63 2.128035 CCATCCGTAAAGAGACATCGC 58.872 52.381 0.00 0.00 0.00 4.58
63 64 3.710326 TCCATCCGTAAAGAGACATCG 57.290 47.619 0.00 0.00 0.00 3.84
64 65 4.372656 CCTTCCATCCGTAAAGAGACATC 58.627 47.826 0.00 0.00 0.00 3.06
65 66 3.134804 CCCTTCCATCCGTAAAGAGACAT 59.865 47.826 0.00 0.00 0.00 3.06
66 67 2.500098 CCCTTCCATCCGTAAAGAGACA 59.500 50.000 0.00 0.00 0.00 3.41
67 68 2.158943 CCCCTTCCATCCGTAAAGAGAC 60.159 54.545 0.00 0.00 0.00 3.36
68 69 2.116238 CCCCTTCCATCCGTAAAGAGA 58.884 52.381 0.00 0.00 0.00 3.10
69 70 1.141053 CCCCCTTCCATCCGTAAAGAG 59.859 57.143 0.00 0.00 0.00 2.85
70 71 1.209621 CCCCCTTCCATCCGTAAAGA 58.790 55.000 0.00 0.00 0.00 2.52
71 72 3.800826 CCCCCTTCCATCCGTAAAG 57.199 57.895 0.00 0.00 0.00 1.85
151 152 9.891828 CACTCATTTTGCTTTGTATGTAGTTTA 57.108 29.630 0.00 0.00 0.00 2.01
152 153 8.629158 TCACTCATTTTGCTTTGTATGTAGTTT 58.371 29.630 0.00 0.00 0.00 2.66
153 154 8.165239 TCACTCATTTTGCTTTGTATGTAGTT 57.835 30.769 0.00 0.00 0.00 2.24
154 155 7.744087 TCACTCATTTTGCTTTGTATGTAGT 57.256 32.000 0.00 0.00 0.00 2.73
155 156 9.282247 GATTCACTCATTTTGCTTTGTATGTAG 57.718 33.333 0.00 0.00 0.00 2.74
156 157 8.791675 TGATTCACTCATTTTGCTTTGTATGTA 58.208 29.630 0.00 0.00 0.00 2.29
157 158 7.660112 TGATTCACTCATTTTGCTTTGTATGT 58.340 30.769 0.00 0.00 0.00 2.29
158 159 8.430063 GTTGATTCACTCATTTTGCTTTGTATG 58.570 33.333 0.00 0.00 32.72 2.39
159 160 8.143193 TGTTGATTCACTCATTTTGCTTTGTAT 58.857 29.630 0.00 0.00 32.72 2.29
160 161 7.434897 GTGTTGATTCACTCATTTTGCTTTGTA 59.565 33.333 0.00 0.00 35.68 2.41
161 162 6.256321 GTGTTGATTCACTCATTTTGCTTTGT 59.744 34.615 0.00 0.00 35.68 2.83
162 163 6.477688 AGTGTTGATTCACTCATTTTGCTTTG 59.522 34.615 0.00 0.00 44.07 2.77
163 164 6.576185 AGTGTTGATTCACTCATTTTGCTTT 58.424 32.000 0.00 0.00 44.07 3.51
164 165 6.152932 AGTGTTGATTCACTCATTTTGCTT 57.847 33.333 0.00 0.00 44.07 3.91
165 166 5.779529 AGTGTTGATTCACTCATTTTGCT 57.220 34.783 0.00 0.00 44.07 3.91
194 195 9.696572 GGGACTACATAAGGATGTATAGACATA 57.303 37.037 2.29 0.00 46.64 2.29
195 196 8.402683 AGGGACTACATAAGGATGTATAGACAT 58.597 37.037 1.81 1.81 45.42 3.06
196 197 7.766628 AGGGACTACATAAGGATGTATAGACA 58.233 38.462 0.00 0.00 45.42 3.41
197 198 9.398538 CTAGGGACTACATAAGGATGTATAGAC 57.601 40.741 0.00 0.00 45.42 2.59
198 199 8.558312 CCTAGGGACTACATAAGGATGTATAGA 58.442 40.741 0.00 0.00 45.42 1.98
199 200 7.780745 CCCTAGGGACTACATAAGGATGTATAG 59.219 44.444 24.99 0.00 41.95 1.31
200 201 7.466539 TCCCTAGGGACTACATAAGGATGTATA 59.533 40.741 27.73 0.00 41.99 1.47
201 202 6.279682 TCCCTAGGGACTACATAAGGATGTAT 59.720 42.308 27.73 0.00 41.99 2.29
202 203 5.618284 TCCCTAGGGACTACATAAGGATGTA 59.382 44.000 27.73 0.00 41.95 2.29
203 204 4.422592 TCCCTAGGGACTACATAAGGATGT 59.577 45.833 27.73 0.00 43.31 3.06
204 205 5.011982 TCCCTAGGGACTACATAAGGATG 57.988 47.826 27.73 0.00 41.75 3.51
205 206 5.698369 TTCCCTAGGGACTACATAAGGAT 57.302 43.478 31.18 0.00 45.11 3.24
206 207 5.492565 TTTCCCTAGGGACTACATAAGGA 57.507 43.478 31.18 8.82 45.11 3.36
207 208 6.085416 AGATTTCCCTAGGGACTACATAAGG 58.915 44.000 31.18 0.00 45.11 2.69
208 209 7.619512 AAGATTTCCCTAGGGACTACATAAG 57.380 40.000 31.18 0.00 45.11 1.73
209 210 9.510062 TTAAAGATTTCCCTAGGGACTACATAA 57.490 33.333 31.18 20.50 45.11 1.90
210 211 9.510062 TTTAAAGATTTCCCTAGGGACTACATA 57.490 33.333 31.18 12.11 45.11 2.29
211 212 8.401955 TTTAAAGATTTCCCTAGGGACTACAT 57.598 34.615 31.18 18.84 45.11 2.29
212 213 7.817910 TTTAAAGATTTCCCTAGGGACTACA 57.182 36.000 31.18 13.37 45.11 2.74
213 214 9.175312 CTTTTTAAAGATTTCCCTAGGGACTAC 57.825 37.037 31.18 21.83 40.12 2.73
214 215 9.119512 TCTTTTTAAAGATTTCCCTAGGGACTA 57.880 33.333 31.18 21.09 40.90 2.59
215 216 7.889073 GTCTTTTTAAAGATTTCCCTAGGGACT 59.111 37.037 31.18 21.05 45.83 3.85
216 217 7.889073 AGTCTTTTTAAAGATTTCCCTAGGGAC 59.111 37.037 31.18 19.00 45.83 4.46
217 218 7.996788 AGTCTTTTTAAAGATTTCCCTAGGGA 58.003 34.615 27.73 27.73 45.83 4.20
218 219 8.651589 AAGTCTTTTTAAAGATTTCCCTAGGG 57.348 34.615 23.22 23.22 45.83 3.53
250 251 9.981460 AACAAATCAATTACTCCCTCTATTTCT 57.019 29.630 0.00 0.00 0.00 2.52
253 254 9.190317 GGAAACAAATCAATTACTCCCTCTATT 57.810 33.333 0.00 0.00 0.00 1.73
254 255 8.336235 TGGAAACAAATCAATTACTCCCTCTAT 58.664 33.333 0.00 0.00 37.44 1.98
255 256 7.695055 TGGAAACAAATCAATTACTCCCTCTA 58.305 34.615 0.00 0.00 37.44 2.43
256 257 6.552008 TGGAAACAAATCAATTACTCCCTCT 58.448 36.000 0.00 0.00 37.44 3.69
257 258 6.127619 CCTGGAAACAAATCAATTACTCCCTC 60.128 42.308 0.00 0.00 42.06 4.30
258 259 5.716703 CCTGGAAACAAATCAATTACTCCCT 59.283 40.000 0.00 0.00 42.06 4.20
259 260 5.714806 TCCTGGAAACAAATCAATTACTCCC 59.285 40.000 0.00 0.00 42.06 4.30
260 261 6.434340 ACTCCTGGAAACAAATCAATTACTCC 59.566 38.462 0.00 0.00 42.06 3.85
261 262 7.454260 ACTCCTGGAAACAAATCAATTACTC 57.546 36.000 0.00 0.00 42.06 2.59
262 263 7.839680 AACTCCTGGAAACAAATCAATTACT 57.160 32.000 0.00 0.00 42.06 2.24
263 264 8.887036 AAAACTCCTGGAAACAAATCAATTAC 57.113 30.769 0.00 0.00 42.06 1.89
264 265 9.323985 CAAAAACTCCTGGAAACAAATCAATTA 57.676 29.630 0.00 0.00 42.06 1.40
265 266 7.201723 GCAAAAACTCCTGGAAACAAATCAATT 60.202 33.333 0.00 0.00 42.06 2.32
266 267 6.260714 GCAAAAACTCCTGGAAACAAATCAAT 59.739 34.615 0.00 0.00 42.06 2.57
267 268 5.584251 GCAAAAACTCCTGGAAACAAATCAA 59.416 36.000 0.00 0.00 42.06 2.57
268 269 5.115480 GCAAAAACTCCTGGAAACAAATCA 58.885 37.500 0.00 0.00 42.06 2.57
269 270 5.006649 GTGCAAAAACTCCTGGAAACAAATC 59.993 40.000 0.00 0.00 42.06 2.17
270 271 4.875536 GTGCAAAAACTCCTGGAAACAAAT 59.124 37.500 0.00 0.00 42.06 2.32
271 272 4.249661 GTGCAAAAACTCCTGGAAACAAA 58.750 39.130 0.00 0.00 42.06 2.83
272 273 3.259374 TGTGCAAAAACTCCTGGAAACAA 59.741 39.130 0.00 0.00 42.06 2.83
273 274 2.828520 TGTGCAAAAACTCCTGGAAACA 59.171 40.909 0.00 0.00 39.59 2.83
274 275 3.518634 TGTGCAAAAACTCCTGGAAAC 57.481 42.857 0.00 0.00 0.00 2.78
275 276 4.751767 AATGTGCAAAAACTCCTGGAAA 57.248 36.364 0.00 0.00 0.00 3.13
276 277 4.405358 AGAAATGTGCAAAAACTCCTGGAA 59.595 37.500 0.00 0.00 0.00 3.53
277 278 3.960102 AGAAATGTGCAAAAACTCCTGGA 59.040 39.130 0.00 0.00 0.00 3.86
278 279 4.326504 AGAAATGTGCAAAAACTCCTGG 57.673 40.909 0.00 0.00 0.00 4.45
375 376 9.936759 TGTGAAAAGTTTAGAATTTGTTTTCCT 57.063 25.926 0.00 0.00 34.46 3.36
379 380 9.665719 ACCATGTGAAAAGTTTAGAATTTGTTT 57.334 25.926 0.00 0.00 0.00 2.83
380 381 9.097257 CACCATGTGAAAAGTTTAGAATTTGTT 57.903 29.630 0.00 0.00 35.23 2.83
381 382 8.474025 TCACCATGTGAAAAGTTTAGAATTTGT 58.526 29.630 0.00 0.00 39.78 2.83
382 383 8.870160 TCACCATGTGAAAAGTTTAGAATTTG 57.130 30.769 0.00 0.00 39.78 2.32
397 398 4.401519 GGCTACTACTAGTTCACCATGTGA 59.598 45.833 0.00 0.00 41.09 3.58
398 399 4.402793 AGGCTACTACTAGTTCACCATGTG 59.597 45.833 0.00 0.00 34.45 3.21
399 400 4.611367 AGGCTACTACTAGTTCACCATGT 58.389 43.478 0.00 0.00 0.00 3.21
400 401 6.710597 TTAGGCTACTACTAGTTCACCATG 57.289 41.667 0.00 0.00 0.00 3.66
401 402 7.670559 CCTATTAGGCTACTACTAGTTCACCAT 59.329 40.741 0.00 0.00 33.10 3.55
402 403 7.002879 CCTATTAGGCTACTACTAGTTCACCA 58.997 42.308 0.00 0.00 33.10 4.17
403 404 7.003482 ACCTATTAGGCTACTACTAGTTCACC 58.997 42.308 9.77 0.00 39.63 4.02
404 405 7.521910 GCACCTATTAGGCTACTACTAGTTCAC 60.522 44.444 9.77 0.00 39.63 3.18
405 406 6.489361 GCACCTATTAGGCTACTACTAGTTCA 59.511 42.308 9.77 0.00 39.63 3.18
406 407 6.489361 TGCACCTATTAGGCTACTACTAGTTC 59.511 42.308 9.77 0.00 39.63 3.01
407 408 6.371278 TGCACCTATTAGGCTACTACTAGTT 58.629 40.000 9.77 0.00 39.63 2.24
408 409 5.950023 TGCACCTATTAGGCTACTACTAGT 58.050 41.667 9.77 0.00 39.63 2.57
409 410 5.106078 GCTGCACCTATTAGGCTACTACTAG 60.106 48.000 9.77 0.00 39.63 2.57
410 411 4.765856 GCTGCACCTATTAGGCTACTACTA 59.234 45.833 9.77 0.00 39.63 1.82
411 412 3.574826 GCTGCACCTATTAGGCTACTACT 59.425 47.826 9.77 0.00 39.63 2.57
412 413 3.306156 GGCTGCACCTATTAGGCTACTAC 60.306 52.174 9.77 0.00 39.63 2.73
413 414 2.897969 GGCTGCACCTATTAGGCTACTA 59.102 50.000 9.77 0.00 39.63 1.82
414 415 1.694696 GGCTGCACCTATTAGGCTACT 59.305 52.381 9.77 0.00 39.63 2.57
415 416 2.171341 GGCTGCACCTATTAGGCTAC 57.829 55.000 9.77 0.39 39.63 3.58
426 427 1.762957 TCTATGGACTAAGGCTGCACC 59.237 52.381 0.50 0.00 39.61 5.01
427 428 3.543680 TTCTATGGACTAAGGCTGCAC 57.456 47.619 0.50 0.00 0.00 4.57
428 429 4.653801 TGTATTCTATGGACTAAGGCTGCA 59.346 41.667 0.50 0.00 0.00 4.41
429 430 5.215252 TGTATTCTATGGACTAAGGCTGC 57.785 43.478 0.00 0.00 0.00 5.25
430 431 6.926272 GTCTTGTATTCTATGGACTAAGGCTG 59.074 42.308 0.00 0.00 0.00 4.85
431 432 6.841755 AGTCTTGTATTCTATGGACTAAGGCT 59.158 38.462 0.00 0.00 33.13 4.58
432 433 7.014808 AGAGTCTTGTATTCTATGGACTAAGGC 59.985 40.741 0.00 0.00 34.73 4.35
433 434 8.472007 AGAGTCTTGTATTCTATGGACTAAGG 57.528 38.462 0.00 0.00 34.73 2.69
434 435 9.959749 GAAGAGTCTTGTATTCTATGGACTAAG 57.040 37.037 10.90 0.00 34.73 2.18
435 436 9.702253 AGAAGAGTCTTGTATTCTATGGACTAA 57.298 33.333 10.90 0.00 34.73 2.24
436 437 9.702253 AAGAAGAGTCTTGTATTCTATGGACTA 57.298 33.333 10.90 0.00 42.73 2.59
437 438 8.602472 AAGAAGAGTCTTGTATTCTATGGACT 57.398 34.615 10.90 0.00 42.73 3.85
438 439 8.691797 AGAAGAAGAGTCTTGTATTCTATGGAC 58.308 37.037 10.90 0.00 44.42 4.02
439 440 8.690884 CAGAAGAAGAGTCTTGTATTCTATGGA 58.309 37.037 10.90 0.00 44.42 3.41
440 441 7.437862 GCAGAAGAAGAGTCTTGTATTCTATGG 59.562 40.741 10.90 6.78 44.42 2.74
462 463 3.008704 GGGTTTCTACCTTTACAGGCAGA 59.991 47.826 0.00 0.00 45.56 4.26
463 464 3.244770 TGGGTTTCTACCTTTACAGGCAG 60.245 47.826 0.00 0.00 45.56 4.85
464 465 2.712087 TGGGTTTCTACCTTTACAGGCA 59.288 45.455 0.00 0.00 45.56 4.75
467 468 5.278808 GCCTTTTGGGTTTCTACCTTTACAG 60.279 44.000 0.00 0.00 44.38 2.74
501 502 6.303903 TGGTTACCTTTTTACCTAGGCTAG 57.696 41.667 14.77 14.77 34.79 3.42
502 503 6.444493 TCATGGTTACCTTTTTACCTAGGCTA 59.556 38.462 9.30 0.00 34.79 3.93
503 504 5.252164 TCATGGTTACCTTTTTACCTAGGCT 59.748 40.000 9.30 0.00 34.79 4.58
504 505 5.503002 TCATGGTTACCTTTTTACCTAGGC 58.497 41.667 9.30 0.00 34.79 3.93
505 506 8.053355 AGATTCATGGTTACCTTTTTACCTAGG 58.947 37.037 7.41 7.41 37.56 3.02
506 507 9.462606 AAGATTCATGGTTACCTTTTTACCTAG 57.537 33.333 2.07 0.00 33.05 3.02
508 509 9.462606 CTAAGATTCATGGTTACCTTTTTACCT 57.537 33.333 2.07 0.00 33.05 3.08
509 510 8.188799 GCTAAGATTCATGGTTACCTTTTTACC 58.811 37.037 2.07 0.00 0.00 2.85
510 511 8.957466 AGCTAAGATTCATGGTTACCTTTTTAC 58.043 33.333 2.07 0.00 0.00 2.01
512 513 9.178758 CTAGCTAAGATTCATGGTTACCTTTTT 57.821 33.333 2.07 0.00 0.00 1.94
531 532 9.240734 GGTGGTATAGATAACTAAGCTAGCTAA 57.759 37.037 19.70 1.81 32.04 3.09
552 553 1.444933 TTGTTCCCTCTCATGGTGGT 58.555 50.000 0.00 0.00 0.00 4.16
559 560 2.840651 GGAGGAGATTTGTTCCCTCTCA 59.159 50.000 0.00 0.00 39.71 3.27
565 580 5.437191 TTAAGGAGGAGGAGATTTGTTCC 57.563 43.478 0.00 0.00 34.83 3.62
566 581 7.946381 AAATTAAGGAGGAGGAGATTTGTTC 57.054 36.000 0.00 0.00 0.00 3.18
574 589 5.045140 TGGGTGTAAAATTAAGGAGGAGGAG 60.045 44.000 0.00 0.00 0.00 3.69
576 591 5.045140 TCTGGGTGTAAAATTAAGGAGGAGG 60.045 44.000 0.00 0.00 0.00 4.30
582 597 7.703058 ATCTTGTCTGGGTGTAAAATTAAGG 57.297 36.000 0.00 0.00 0.00 2.69
612 631 7.634817 GTCGGAAGATGTAAATATTCACGTTTG 59.365 37.037 2.79 0.00 45.19 2.93
613 632 7.332430 TGTCGGAAGATGTAAATATTCACGTTT 59.668 33.333 2.79 0.00 45.19 3.60
615 634 6.334989 TGTCGGAAGATGTAAATATTCACGT 58.665 36.000 2.79 0.00 45.19 4.49
617 636 7.072030 GCATGTCGGAAGATGTAAATATTCAC 58.928 38.462 2.79 0.00 45.19 3.18
622 641 7.518211 CGAATTGCATGTCGGAAGATGTAAATA 60.518 37.037 10.80 0.00 45.19 1.40
626 645 3.555547 CGAATTGCATGTCGGAAGATGTA 59.444 43.478 10.80 0.00 45.19 2.29
627 646 2.352651 CGAATTGCATGTCGGAAGATGT 59.647 45.455 10.80 0.00 45.19 3.06
652 671 3.088532 TCATGTCCCCTTGTAAATGCAC 58.911 45.455 0.00 0.00 0.00 4.57
712 731 6.959361 AGTTACGCCATGCAAGATAATTAAG 58.041 36.000 0.00 0.00 0.00 1.85
713 732 6.935741 AGTTACGCCATGCAAGATAATTAA 57.064 33.333 0.00 0.00 0.00 1.40
714 733 9.713713 TTATAGTTACGCCATGCAAGATAATTA 57.286 29.630 0.00 0.00 0.00 1.40
715 734 8.504005 GTTATAGTTACGCCATGCAAGATAATT 58.496 33.333 0.00 0.00 0.00 1.40
716 735 7.659799 TGTTATAGTTACGCCATGCAAGATAAT 59.340 33.333 0.00 0.00 0.00 1.28
717 736 6.987404 TGTTATAGTTACGCCATGCAAGATAA 59.013 34.615 0.00 0.00 0.00 1.75
718 737 6.517605 TGTTATAGTTACGCCATGCAAGATA 58.482 36.000 0.00 0.00 0.00 1.98
719 738 5.364778 TGTTATAGTTACGCCATGCAAGAT 58.635 37.500 0.00 0.00 0.00 2.40
720 739 4.760878 TGTTATAGTTACGCCATGCAAGA 58.239 39.130 0.00 0.00 0.00 3.02
761 780 6.937465 GGCATTTATTTTGTTCCCCTTGTTAA 59.063 34.615 0.00 0.00 0.00 2.01
762 781 6.271159 AGGCATTTATTTTGTTCCCCTTGTTA 59.729 34.615 0.00 0.00 0.00 2.41
764 783 4.597075 AGGCATTTATTTTGTTCCCCTTGT 59.403 37.500 0.00 0.00 0.00 3.16
765 784 5.164620 AGGCATTTATTTTGTTCCCCTTG 57.835 39.130 0.00 0.00 0.00 3.61
766 785 5.559770 CAAGGCATTTATTTTGTTCCCCTT 58.440 37.500 0.00 0.00 0.00 3.95
767 786 4.565444 GCAAGGCATTTATTTTGTTCCCCT 60.565 41.667 0.00 0.00 0.00 4.79
768 787 3.689161 GCAAGGCATTTATTTTGTTCCCC 59.311 43.478 0.00 0.00 0.00 4.81
769 788 4.578871 AGCAAGGCATTTATTTTGTTCCC 58.421 39.130 0.00 0.00 0.00 3.97
810 829 3.755905 GAGAGGAAGCAAAGGAAAGAAGG 59.244 47.826 0.00 0.00 0.00 3.46
873 901 0.679640 CCTCCGTCTCTGTCTCTGCT 60.680 60.000 0.00 0.00 0.00 4.24
874 902 0.678366 TCCTCCGTCTCTGTCTCTGC 60.678 60.000 0.00 0.00 0.00 4.26
875 903 1.065782 TCTCCTCCGTCTCTGTCTCTG 60.066 57.143 0.00 0.00 0.00 3.35
888 916 7.041712 GCAAGTTAACTAATTATGCTCTCCTCC 60.042 40.741 17.91 0.00 0.00 4.30
945 979 1.885887 GTGTTCTGTAATGGCAAGGCA 59.114 47.619 0.00 0.00 0.00 4.75
956 990 0.840617 TGGCTTGGTGGTGTTCTGTA 59.159 50.000 0.00 0.00 0.00 2.74
960 994 0.104120 GGTTTGGCTTGGTGGTGTTC 59.896 55.000 0.00 0.00 0.00 3.18
1022 1078 1.414061 CCTGAGGGGCATGTAGGAGG 61.414 65.000 0.00 0.00 0.00 4.30
1023 1079 2.140405 CCTGAGGGGCATGTAGGAG 58.860 63.158 0.00 0.00 0.00 3.69
1024 1080 4.399764 CCTGAGGGGCATGTAGGA 57.600 61.111 0.00 0.00 0.00 2.94
1106 1167 3.754323 TGGTAAATACCTTTGGAAGCACG 59.246 43.478 10.77 0.00 46.58 5.34
1122 1183 5.455056 AGTGTTTGTGTTTGTGTGGTAAA 57.545 34.783 0.00 0.00 0.00 2.01
1123 1184 4.082679 GGAGTGTTTGTGTTTGTGTGGTAA 60.083 41.667 0.00 0.00 0.00 2.85
1162 1275 6.747280 GGTGTTTGCATACATACATTTCAGAC 59.253 38.462 13.22 0.00 39.46 3.51
1179 1292 1.647346 CATCATGCATGGGTGTTTGC 58.353 50.000 25.97 0.00 39.33 3.68
1220 1355 0.317160 TTGGAGACGTACCTGCAGTG 59.683 55.000 13.81 6.81 35.92 3.66
1221 1356 0.603569 CTTGGAGACGTACCTGCAGT 59.396 55.000 13.81 3.45 35.92 4.40
1222 1357 0.108615 CCTTGGAGACGTACCTGCAG 60.109 60.000 6.78 6.78 35.92 4.41
1223 1358 1.541310 CCCTTGGAGACGTACCTGCA 61.541 60.000 11.61 3.85 32.57 4.41
1224 1359 1.218316 CCCTTGGAGACGTACCTGC 59.782 63.158 11.61 1.27 0.00 4.85
1307 1442 2.435059 GAGCCTGGCCTTGTCGAC 60.435 66.667 16.57 9.11 0.00 4.20
1308 1443 4.069232 CGAGCCTGGCCTTGTCGA 62.069 66.667 19.63 0.00 32.32 4.20
1330 1465 3.753070 GACGTAGCCGAGGAAGCCG 62.753 68.421 0.00 0.00 37.88 5.52
1454 1590 4.933064 CGTGATCTCCTCGGCGGC 62.933 72.222 7.21 0.00 0.00 6.53
1458 1594 3.471244 GACGGCGTGATCTCCTCGG 62.471 68.421 21.19 0.00 32.87 4.63
1474 1610 0.320421 TGCACTTGAGGTAAGCGGAC 60.320 55.000 0.00 0.00 40.16 4.79
1524 1667 7.935210 TGTGTAGATGAATTGATGATATGCAGT 59.065 33.333 0.00 0.00 0.00 4.40
1526 1669 8.857694 ATGTGTAGATGAATTGATGATATGCA 57.142 30.769 0.00 0.00 0.00 3.96
1614 1875 2.034558 CGTGCCCTGAAGAAAACAACAT 59.965 45.455 0.00 0.00 0.00 2.71
1750 2023 4.112341 GGCTTGCCGCTCAGCTTG 62.112 66.667 13.01 0.00 39.13 4.01
1843 2116 3.486375 GGAACGATCAGTCAACATGCATG 60.486 47.826 25.09 25.09 0.00 4.06
1844 2117 2.679837 GGAACGATCAGTCAACATGCAT 59.320 45.455 0.00 0.00 0.00 3.96
1845 2118 2.076100 GGAACGATCAGTCAACATGCA 58.924 47.619 0.00 0.00 0.00 3.96
1846 2119 2.076100 TGGAACGATCAGTCAACATGC 58.924 47.619 0.00 0.00 0.00 4.06
1855 2128 1.262417 CATGCCGAATGGAACGATCAG 59.738 52.381 0.00 0.00 37.49 2.90
1887 2160 0.253160 AGGCCCAGGTCATTCTACCA 60.253 55.000 0.00 0.00 42.40 3.25
1898 2181 1.204113 AAAGTGAGGAGAGGCCCAGG 61.204 60.000 0.00 0.00 37.37 4.45
1901 2184 0.915364 ATGAAAGTGAGGAGAGGCCC 59.085 55.000 0.00 0.00 37.37 5.80
2083 2367 6.849502 TCGATCGGTCAGGTATAAATATGTC 58.150 40.000 16.41 0.00 0.00 3.06
2151 2451 0.251341 CACCCCACCCCTTCTCAAAG 60.251 60.000 0.00 0.00 0.00 2.77
2154 2454 1.846124 GTCACCCCACCCCTTCTCA 60.846 63.158 0.00 0.00 0.00 3.27
2397 2699 3.446442 AGCATTGAGACCTGTGGATTT 57.554 42.857 0.00 0.00 0.00 2.17
2538 2926 3.181530 CGCAGTTTACCACGAGAATCTTG 60.182 47.826 0.00 0.00 33.60 3.02
2547 2935 3.007070 GCGGTCGCAGTTTACCACG 62.007 63.158 10.67 0.00 41.49 4.94
2558 2946 1.084289 AGTTTAATGAAGGCGGTCGC 58.916 50.000 6.83 6.83 41.06 5.19
2598 2986 2.748268 GCTGTCAGAAGCTTCCTCG 58.252 57.895 22.81 11.87 40.20 4.63
2819 3222 7.231317 CCAATGCCTATTAAAATTCCTAGCTGA 59.769 37.037 0.00 0.00 0.00 4.26
2835 3238 1.826720 CAAGGTGTTGCCAATGCCTAT 59.173 47.619 3.68 0.00 40.61 2.57
3076 3488 4.929211 CAGTAACGTGATGTCAGATTTGGA 59.071 41.667 0.00 0.00 0.00 3.53
3093 3505 9.173939 CTGTCAGTTGATGAATTTTTCAGTAAC 57.826 33.333 9.54 9.54 43.98 2.50
3098 3510 5.832595 TCCCTGTCAGTTGATGAATTTTTCA 59.167 36.000 0.00 0.00 45.01 2.69
3099 3511 6.331369 TCCCTGTCAGTTGATGAATTTTTC 57.669 37.500 0.00 0.00 40.43 2.29
3254 4530 2.940158 TCTTGGTAGGTGCTAGCGATA 58.060 47.619 10.77 0.00 37.27 2.92
3323 4599 1.638467 GGATGAGTTGCGCGACATC 59.362 57.895 28.83 21.88 38.53 3.06
3399 4693 1.607467 GCCCTGGCATTGTGAAGGT 60.607 57.895 2.58 0.00 41.49 3.50
3796 5163 0.036875 CCAGGTTGACAAGGTCCCTC 59.963 60.000 0.00 0.00 0.00 4.30
3841 5209 3.079960 TCTCTGTCGTTTGACTGTGAC 57.920 47.619 0.00 0.00 45.70 3.67
3915 5283 2.143419 ATCCAGCGGATCTGTCCCC 61.143 63.158 2.89 0.00 38.09 4.81
4046 6163 0.035317 TCAGTCACATGGTCAGTGCC 59.965 55.000 0.00 0.00 36.93 5.01
4100 6217 1.062685 CTCGATGACCGTCAGTCCG 59.937 63.158 7.41 10.20 45.68 4.79
4202 6319 0.254462 TGCCATTGAGCGGGTTGATA 59.746 50.000 0.00 0.00 34.65 2.15
4217 6334 3.952508 TCGCTTGCCTCCTTGCCA 61.953 61.111 0.00 0.00 0.00 4.92
4310 6427 3.024547 ACAGTACCACTCATAGATGCGT 58.975 45.455 0.00 0.00 0.00 5.24
4353 6494 6.971527 CATAATGTGTCCACAAATGCATTT 57.028 33.333 18.99 18.99 45.41 2.32
4363 6504 6.446318 TGAAGAAAAAGCATAATGTGTCCAC 58.554 36.000 0.00 0.00 0.00 4.02
4364 6505 6.489700 TCTGAAGAAAAAGCATAATGTGTCCA 59.510 34.615 0.00 0.00 0.00 4.02
4365 6506 6.913170 TCTGAAGAAAAAGCATAATGTGTCC 58.087 36.000 0.00 0.00 0.00 4.02
4366 6507 8.801715 TTTCTGAAGAAAAAGCATAATGTGTC 57.198 30.769 3.00 0.00 40.68 3.67
4395 6536 7.978975 GCAATTATAGACAGGGCATTGTTAAAA 59.021 33.333 0.00 0.00 0.00 1.52
4408 6549 6.237835 CCACGTGTAACTGCAATTATAGACAG 60.238 42.308 15.65 0.00 36.22 3.51
4416 6560 1.266718 CTGCCACGTGTAACTGCAATT 59.733 47.619 15.65 0.00 34.10 2.32
4645 6815 1.764571 TTGGGACGGTCTTCACCTGG 61.765 60.000 8.23 0.00 41.17 4.45
4898 7077 6.319658 CAGTTTTATGCCAGTATGACCTGATT 59.680 38.462 0.00 0.00 39.69 2.57
4908 7089 7.496920 CAGAGATTCATCAGTTTTATGCCAGTA 59.503 37.037 0.00 0.00 0.00 2.74
5064 7269 6.409524 ACTTTCCAAATCAATGACACACAT 57.590 33.333 0.00 0.00 41.45 3.21
5259 7484 4.498009 GCAACTGTTTCTGAAGCTTTGCTA 60.498 41.667 23.50 0.37 38.25 3.49
5279 7525 5.323371 AGTTTGCAAGTTAGTTTCTGCAA 57.677 34.783 0.00 4.32 39.96 4.08
5281 7527 6.196538 GTGTAAGTTTGCAAGTTAGTTTCTGC 59.803 38.462 0.00 0.00 0.00 4.26
5285 7531 5.575019 CGGTGTAAGTTTGCAAGTTAGTTT 58.425 37.500 0.00 0.00 0.00 2.66
5316 7584 1.313812 ATCCTGGTGACGTCGAGGAC 61.314 60.000 25.03 12.73 43.12 3.85
5328 7596 2.254152 TCACTTGGCTCTATCCTGGT 57.746 50.000 0.00 0.00 0.00 4.00
5332 7600 9.561069 TTTTATTAAGATCACTTGGCTCTATCC 57.439 33.333 0.00 0.00 37.53 2.59
5358 7626 9.014297 TCTTCTTCTTCTTCTTCTTTTTGTTGT 57.986 29.630 0.00 0.00 0.00 3.32
5361 7629 9.454859 TCTTCTTCTTCTTCTTCTTCTTTTTGT 57.545 29.630 0.00 0.00 0.00 2.83
5377 7645 2.096019 CCTTGCGCTGTTCTTCTTCTTC 60.096 50.000 9.73 0.00 0.00 2.87
5380 7648 0.110010 GCCTTGCGCTGTTCTTCTTC 60.110 55.000 9.73 0.00 0.00 2.87
5381 7649 1.952263 GCCTTGCGCTGTTCTTCTT 59.048 52.632 9.73 0.00 0.00 2.52
5382 7650 3.660621 GCCTTGCGCTGTTCTTCT 58.339 55.556 9.73 0.00 0.00 2.85
5398 7666 1.136147 CAGAGCATTCAAGCCACGC 59.864 57.895 0.00 0.00 34.23 5.34
5415 7683 1.494721 AGGTCTGGAGCTTGAAAACCA 59.505 47.619 8.38 0.00 35.28 3.67
5435 7703 4.046462 CGTTGAACCTCGAGTACTTTTGA 58.954 43.478 12.31 0.00 0.00 2.69
5436 7704 3.800506 ACGTTGAACCTCGAGTACTTTTG 59.199 43.478 12.31 0.00 0.00 2.44
5457 7727 5.907391 GTGTGTACTTTGTCATGCTGTAAAC 59.093 40.000 0.00 0.00 0.00 2.01
5464 7734 6.457392 CCATCTATGTGTGTACTTTGTCATGC 60.457 42.308 0.00 0.00 0.00 4.06
5468 7738 7.321153 AGTACCATCTATGTGTGTACTTTGTC 58.679 38.462 0.00 0.00 39.11 3.18
5501 7771 2.354203 GCCCTACTATGCTGGTCTATGC 60.354 54.545 0.00 0.00 0.00 3.14
5536 7806 5.986135 AGAAAGTAGTAATAATCTGCCAGCG 59.014 40.000 0.00 0.00 0.00 5.18
5590 7860 6.886459 AGATTAAAATGCTCCTTAAGTCAGCA 59.114 34.615 22.18 22.18 46.87 4.41
5593 7863 6.538742 CGGAGATTAAAATGCTCCTTAAGTCA 59.461 38.462 0.00 0.00 44.73 3.41
5640 7910 5.499139 ACAATGTGAAGAACGTCATGTTT 57.501 34.783 0.00 0.00 42.09 2.83
5667 7937 1.571773 TTAAGCCCCTTCCAGCCCTC 61.572 60.000 0.00 0.00 0.00 4.30
5670 7940 0.681243 CTGTTAAGCCCCTTCCAGCC 60.681 60.000 0.00 0.00 0.00 4.85
5709 7979 4.041917 TCGGCGTCACGTGGTACC 62.042 66.667 17.00 13.12 34.94 3.34
5869 8139 3.935828 GTGTCCTTACTGAAGCCATCTTC 59.064 47.826 0.00 0.00 46.85 2.87
5889 8160 6.198966 GTGAAAAGTATTTCCACTGCTTTGTG 59.801 38.462 0.00 0.00 43.54 3.33
5900 8171 5.918576 CCTTGTTTCGGTGAAAAGTATTTCC 59.081 40.000 0.00 0.00 43.54 3.13
5907 8178 2.099098 ACTGCCTTGTTTCGGTGAAAAG 59.901 45.455 0.00 0.00 33.14 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.