Multiple sequence alignment - TraesCS6B01G466200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G466200 chr6B 100.000 2230 0 0 1 2230 716542919 716545148 0 4119
1 TraesCS6B01G466200 chrUn 89.683 2239 210 18 4 2230 81369966 81367737 0 2835
2 TraesCS6B01G466200 chrUn 89.375 2240 217 19 4 2230 81396511 81394280 0 2798
3 TraesCS6B01G466200 chrUn 89.136 2246 215 20 4 2230 81375613 81373378 0 2769
4 TraesCS6B01G466200 chrUn 88.094 2251 232 23 2 2230 312909243 312907007 0 2639
5 TraesCS6B01G466200 chrUn 88.050 2251 227 28 2 2230 75347366 75349596 0 2628
6 TraesCS6B01G466200 chrUn 88.005 2251 234 21 2 2230 312910688 312912924 0 2628
7 TraesCS6B01G466200 chr6D 89.370 2239 218 18 4 2230 471730583 471732813 0 2798
8 TraesCS6B01G466200 chr6A 88.178 2250 225 30 2 2230 618017552 618015323 0 2643
9 TraesCS6B01G466200 chr6A 88.084 2249 235 21 2 2230 618012890 618010655 0 2638


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G466200 chr6B 716542919 716545148 2229 False 4119.0 4119 100.0000 1 2230 1 chr6B.!!$F1 2229
1 TraesCS6B01G466200 chrUn 81367737 81375613 7876 True 2802.0 2835 89.4095 4 2230 2 chrUn.!!$R3 2226
2 TraesCS6B01G466200 chrUn 81394280 81396511 2231 True 2798.0 2798 89.3750 4 2230 1 chrUn.!!$R1 2226
3 TraesCS6B01G466200 chrUn 312907007 312909243 2236 True 2639.0 2639 88.0940 2 2230 1 chrUn.!!$R2 2228
4 TraesCS6B01G466200 chrUn 75347366 75349596 2230 False 2628.0 2628 88.0500 2 2230 1 chrUn.!!$F1 2228
5 TraesCS6B01G466200 chrUn 312910688 312912924 2236 False 2628.0 2628 88.0050 2 2230 1 chrUn.!!$F2 2228
6 TraesCS6B01G466200 chr6D 471730583 471732813 2230 False 2798.0 2798 89.3700 4 2230 1 chr6D.!!$F1 2226
7 TraesCS6B01G466200 chr6A 618010655 618017552 6897 True 2640.5 2643 88.1310 2 2230 2 chr6A.!!$R1 2228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 1.005340 GCAGATCGAGAGCAACTTGG 58.995 55.000 0.0 0.0 0.00 3.61 F
970 1009 1.139455 ACAGTTTCGAACGGGAGGAAA 59.861 47.619 0.0 0.0 36.23 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1196 11543 0.46546 GTGCAGGAGGAACAACCACA 60.465 55.0 0.0 0.0 42.04 4.17 R
2077 12439 1.18620 AGCAGATTCAGCCAGTACGA 58.814 50.0 0.0 0.0 0.00 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 8.329203 ACTTGAGTATGACTTCAATTCTTTCC 57.671 34.615 0.00 0.00 0.00 3.13
55 56 4.502645 ACTTCAATTCTTTCCAAAAACGCG 59.497 37.500 3.53 3.53 0.00 6.01
78 79 5.893512 CAACGATGCATTATTTCCAATGG 57.106 39.130 0.00 0.00 36.58 3.16
86 87 6.944096 TGCATTATTTCCAATGGATCAACAA 58.056 32.000 1.39 0.00 36.58 2.83
125 126 1.005340 GCAGATCGAGAGCAACTTGG 58.995 55.000 0.00 0.00 0.00 3.61
145 146 6.876257 ACTTGGAGTGATGACTTTTCTGTATC 59.124 38.462 0.00 0.00 30.16 2.24
170 172 8.637099 TCAATGGACAATAATCTGTGTTGAAAA 58.363 29.630 0.00 0.00 0.00 2.29
171 173 9.258826 CAATGGACAATAATCTGTGTTGAAAAA 57.741 29.630 0.00 0.00 0.00 1.94
218 223 4.321745 GCAATGAGATGCACTTTAAACACG 59.678 41.667 0.00 0.00 45.70 4.49
221 226 3.058983 TGAGATGCACTTTAAACACGCAG 60.059 43.478 0.00 0.00 35.79 5.18
234 239 1.346395 ACACGCAGGTTTCTATGTGGA 59.654 47.619 0.00 0.00 33.93 4.02
244 249 4.141846 GGTTTCTATGTGGAGATGCTCTGA 60.142 45.833 0.00 0.00 0.00 3.27
256 261 5.278512 GGAGATGCTCTGAATACGTACATCA 60.279 44.000 17.30 14.48 35.91 3.07
259 264 6.699204 AGATGCTCTGAATACGTACATCAAAG 59.301 38.462 17.30 13.13 35.91 2.77
262 267 6.697455 TGCTCTGAATACGTACATCAAAGATC 59.303 38.462 14.55 6.89 0.00 2.75
266 271 9.599866 TCTGAATACGTACATCAAAGATCAAAT 57.400 29.630 12.44 0.00 0.00 2.32
279 289 8.126871 TCAAAGATCAAATACGTACATGCTAC 57.873 34.615 0.00 0.00 0.00 3.58
301 311 4.152402 ACTTCAACTTACACGCTTATGCAG 59.848 41.667 0.00 0.00 39.64 4.41
336 346 1.542472 TCGGCATCGTTACTCTCAACA 59.458 47.619 0.00 0.00 37.69 3.33
337 347 2.029739 TCGGCATCGTTACTCTCAACAA 60.030 45.455 0.00 0.00 37.69 2.83
341 351 4.378459 GGCATCGTTACTCTCAACAAAAGG 60.378 45.833 0.00 0.00 0.00 3.11
343 353 4.411256 TCGTTACTCTCAACAAAAGGGT 57.589 40.909 0.00 0.00 0.00 4.34
346 356 4.573201 CGTTACTCTCAACAAAAGGGTGAA 59.427 41.667 0.00 0.00 0.00 3.18
392 402 7.230849 TCAAGTAAAATGCATGGATTCTTGT 57.769 32.000 25.48 12.24 33.77 3.16
393 403 8.347004 TCAAGTAAAATGCATGGATTCTTGTA 57.653 30.769 25.48 16.30 33.77 2.41
397 407 8.131100 AGTAAAATGCATGGATTCTTGTAATCG 58.869 33.333 13.26 0.00 0.00 3.34
402 412 5.589855 TGCATGGATTCTTGTAATCGACATT 59.410 36.000 0.00 0.00 38.07 2.71
417 427 6.575083 ATCGACATTGTTAATCTCGACAAG 57.425 37.500 4.49 0.00 40.26 3.16
478 488 8.139350 ACAAATGAATGCATTGTTATCATCGAT 58.861 29.630 18.59 0.00 43.71 3.59
482 492 7.678226 TGAATGCATTGTTATCATCGATATCG 58.322 34.615 18.59 19.14 41.45 2.92
487 497 8.432359 TGCATTGTTATCATCGATATCGTTAAC 58.568 33.333 23.61 22.42 40.80 2.01
494 505 5.438117 TCATCGATATCGTTAACTCGACAC 58.562 41.667 23.61 0.94 42.26 3.67
499 510 7.460909 CGATATCGTTAACTCGACACGGAGT 62.461 48.000 17.06 0.00 42.56 3.85
549 560 5.136816 ACTATGAACAAAATGCATGCACA 57.863 34.783 25.37 15.05 0.00 4.57
552 563 3.382855 TGAACAAAATGCATGCACAGTC 58.617 40.909 25.37 14.54 0.00 3.51
567 578 3.197265 CACAGTCATAATCGACATGGCA 58.803 45.455 14.02 0.00 38.43 4.92
576 587 2.134201 TCGACATGGCATAAGCTACG 57.866 50.000 0.00 0.57 41.70 3.51
579 590 1.261619 GACATGGCATAAGCTACGCAC 59.738 52.381 0.00 0.00 41.70 5.34
585 596 1.953559 CATAAGCTACGCACATGGGT 58.046 50.000 6.81 6.81 43.82 4.51
600 611 2.401583 TGGGTGTGCACTCATACATC 57.598 50.000 19.41 4.78 36.78 3.06
618 629 9.458374 TCATACATCTGTATTTATACACACACG 57.542 33.333 0.06 0.00 39.06 4.49
624 635 7.475015 TCTGTATTTATACACACACGTACCTC 58.525 38.462 0.00 0.00 38.28 3.85
640 651 2.881074 ACCTCGAACACAAGATCATCG 58.119 47.619 0.00 0.00 34.98 3.84
706 717 5.430417 TCTTCCCTAAAGGTTGGCATGTATA 59.570 40.000 0.00 0.00 35.54 1.47
769 781 4.694037 AGACCGATTACTTGTTTGGTTAGC 59.306 41.667 0.00 0.00 29.38 3.09
800 812 4.636206 GCTTTCGGTTATGACATCTTCCTT 59.364 41.667 0.00 0.00 0.00 3.36
822 834 3.026694 GGCTTAGAGCATGTTTCCCATT 58.973 45.455 2.04 0.00 44.75 3.16
912 950 6.032094 CACCATGCATGTTTCTCTTGATTAC 58.968 40.000 24.58 0.00 0.00 1.89
914 952 5.125900 CCATGCATGTTTCTCTTGATTACCA 59.874 40.000 24.58 0.00 0.00 3.25
961 1000 7.847564 ACTTGTCGTTAATTAACAGTTTCGAAC 59.152 33.333 24.27 12.07 35.99 3.95
970 1009 1.139455 ACAGTTTCGAACGGGAGGAAA 59.861 47.619 0.00 0.00 36.23 3.13
1023 1062 2.184020 CTGGTCCGGTGCCTGAATCA 62.184 60.000 16.39 0.00 0.00 2.57
1042 1081 2.438434 GGCCGGGTCTGATTGGTG 60.438 66.667 2.18 0.00 0.00 4.17
1043 1082 2.351276 GCCGGGTCTGATTGGTGT 59.649 61.111 2.18 0.00 0.00 4.16
1048 1087 1.806542 CGGGTCTGATTGGTGTTGAAG 59.193 52.381 0.00 0.00 0.00 3.02
1065 6745 2.950975 TGAAGTGAATGCAGCAGTTCAA 59.049 40.909 27.21 17.01 46.77 2.69
1076 6756 3.242349 GCAGCAGTTCAAATCATCTCTCG 60.242 47.826 0.00 0.00 0.00 4.04
1177 11523 5.499493 CGCGTTATCATTTACAACGATGTCA 60.499 40.000 0.00 0.00 45.92 3.58
1183 11530 2.093306 TTACAACGATGTCAGCCAGG 57.907 50.000 0.00 0.00 41.05 4.45
1192 11539 1.340399 TGTCAGCCAGGGCCTGATAG 61.340 60.000 34.84 21.63 43.17 2.08
1195 11542 1.149923 TCAGCCAGGGCCTGATAGATA 59.850 52.381 34.84 11.76 43.17 1.98
1196 11543 2.194859 CAGCCAGGGCCTGATAGATAT 58.805 52.381 34.84 8.98 43.17 1.63
1263 11610 4.725790 ACATGGCTGGCTTTATCTTTTC 57.274 40.909 2.00 0.00 0.00 2.29
1268 11615 2.478539 GCTGGCTTTATCTTTTCTGCCG 60.479 50.000 0.00 0.00 42.87 5.69
1276 11623 7.803659 GGCTTTATCTTTTCTGCCGTTATTATC 59.196 37.037 0.00 0.00 0.00 1.75
1289 11636 7.203255 GCCGTTATTATCAAAGGCTAGAATT 57.797 36.000 5.68 0.00 45.96 2.17
1500 11854 6.127451 TGAGCGTCTTCCTTTATCTTGTATGA 60.127 38.462 0.00 0.00 0.00 2.15
1527 11881 6.761242 TCATAATATTAGCGCCATGTCATACC 59.239 38.462 2.29 0.00 0.00 2.73
1542 11896 6.061022 TGTCATACCCAAGTATCAATGTGT 57.939 37.500 0.00 0.00 37.06 3.72
1550 11904 8.415950 ACCCAAGTATCAATGTGTATTTTCAA 57.584 30.769 0.00 0.00 0.00 2.69
1658 12012 4.148825 GATGTCCCGACCGCAGCT 62.149 66.667 0.00 0.00 0.00 4.24
1722 12077 5.906113 TCTCTCTCACTTATGTCCTCAAC 57.094 43.478 0.00 0.00 0.00 3.18
1760 12116 2.285668 TAAGCCTGCTGCCCCTCT 60.286 61.111 0.00 0.00 42.71 3.69
1771 12132 2.743553 CTGCCCCTCTCCATCAAAAAT 58.256 47.619 0.00 0.00 0.00 1.82
1825 12187 8.603242 AAAGGAAATATGTCATACGTACATCC 57.397 34.615 5.73 3.01 38.49 3.51
1855 12217 3.195610 TCCACTGATCATCACACACCTAC 59.804 47.826 0.00 0.00 0.00 3.18
1859 12221 4.223700 ACTGATCATCACACACCTACATGT 59.776 41.667 2.69 2.69 0.00 3.21
1880 12242 9.436957 ACATGTAGTAGAGGAATTTACAACAAG 57.563 33.333 0.00 0.00 0.00 3.16
1911 12273 4.816385 CAGCTTAAGAGGTCAACTTCACAA 59.184 41.667 6.67 0.00 0.00 3.33
1942 12304 7.928167 TGATAGCACCAGATTACAATCTTACAG 59.072 37.037 1.64 0.00 42.96 2.74
1963 12325 3.118445 AGGACAGAGCTAGAAAGATTGCC 60.118 47.826 0.00 0.00 0.00 4.52
2047 12409 9.857656 ACAGATAATGGACATTAGAATTCACAT 57.142 29.630 8.44 0.00 36.79 3.21
2077 12439 5.357257 AGAATGGAATAACGTGATTAGCGT 58.643 37.500 0.00 0.00 45.07 5.07
2082 12444 4.145414 GGAATAACGTGATTAGCGTCGTAC 59.855 45.833 0.00 0.00 42.10 3.67
2083 12445 2.907910 AACGTGATTAGCGTCGTACT 57.092 45.000 0.00 0.00 42.10 2.73
2087 12449 1.100510 TGATTAGCGTCGTACTGGCT 58.899 50.000 7.24 7.24 40.68 4.75
2092 12454 0.179134 AGCGTCGTACTGGCTGAATC 60.179 55.000 0.00 0.00 35.31 2.52
2142 12506 2.956913 TGTTGTAACGGCGCTATAACA 58.043 42.857 22.80 22.80 30.69 2.41
2143 12507 3.324117 TGTTGTAACGGCGCTATAACAA 58.676 40.909 23.89 16.18 30.36 2.83
2152 12516 3.488310 CGGCGCTATAACAACGAAATAGT 59.512 43.478 7.64 0.00 0.00 2.12
2189 12554 6.267699 TCGTTGATACAGATGGACCATATCTT 59.732 38.462 7.05 0.00 32.75 2.40
2213 12578 3.053291 GATGGTTCGGCGGCAACA 61.053 61.111 19.97 3.17 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.855110 TCAAGTATCAATGCCAGTTCTTTTTAA 58.145 29.630 0.00 0.00 0.00 1.52
13 14 7.776933 TGAAGTCATACTCAAGTATCAATGC 57.223 36.000 0.00 0.00 39.06 3.56
46 47 1.125656 GCATCGTTGCGCGTTTTTG 59.874 52.632 8.43 0.00 39.49 2.44
55 56 7.231752 ATCCATTGGAAATAATGCATCGTTGC 61.232 38.462 9.98 11.56 41.69 4.17
125 126 7.550551 TCCATTGATACAGAAAAGTCATCACTC 59.449 37.037 0.00 0.00 29.93 3.51
145 146 8.815141 TTTTCAACACAGATTATTGTCCATTG 57.185 30.769 0.00 0.00 0.00 2.82
200 202 3.482786 CTGCGTGTTTAAAGTGCATCTC 58.517 45.455 8.78 0.00 34.66 2.75
218 223 2.615912 GCATCTCCACATAGAAACCTGC 59.384 50.000 0.00 0.00 0.00 4.85
244 249 9.309516 ACGTATTTGATCTTTGATGTACGTATT 57.690 29.630 0.00 0.00 43.18 1.89
256 261 8.718102 AAGTAGCATGTACGTATTTGATCTTT 57.282 30.769 0.00 0.00 0.00 2.52
259 264 7.694388 TGAAGTAGCATGTACGTATTTGATC 57.306 36.000 0.00 0.00 0.00 2.92
262 267 7.290857 AGTTGAAGTAGCATGTACGTATTTG 57.709 36.000 0.00 0.75 0.00 2.32
266 271 6.803320 GTGTAAGTTGAAGTAGCATGTACGTA 59.197 38.462 0.00 0.00 0.00 3.57
279 289 4.436050 CCTGCATAAGCGTGTAAGTTGAAG 60.436 45.833 0.00 0.00 46.23 3.02
301 311 1.675483 TGCCGATGACACAATAATGCC 59.325 47.619 0.00 0.00 0.00 4.40
336 346 4.961438 AACATCAGCATTTCACCCTTTT 57.039 36.364 0.00 0.00 0.00 2.27
337 347 4.590222 AGAAACATCAGCATTTCACCCTTT 59.410 37.500 0.00 0.00 37.30 3.11
341 351 7.315142 TGATTAAGAAACATCAGCATTTCACC 58.685 34.615 0.00 0.00 37.30 4.02
343 353 9.577110 GATTGATTAAGAAACATCAGCATTTCA 57.423 29.630 0.00 0.00 37.30 2.69
346 356 9.582431 CTTGATTGATTAAGAAACATCAGCATT 57.418 29.630 0.00 0.00 31.04 3.56
397 407 5.120830 ACTGCTTGTCGAGATTAACAATGTC 59.879 40.000 0.00 0.00 35.03 3.06
402 412 3.006430 TCCACTGCTTGTCGAGATTAACA 59.994 43.478 0.00 0.00 0.00 2.41
417 427 3.881688 AGAAACATCAGCATATCCACTGC 59.118 43.478 0.00 0.00 39.97 4.40
478 488 3.002791 ACTCCGTGTCGAGTTAACGATA 58.997 45.455 10.43 0.00 40.23 2.92
482 492 1.058404 GCACTCCGTGTCGAGTTAAC 58.942 55.000 0.00 0.00 41.23 2.01
487 497 1.481240 CATATGCACTCCGTGTCGAG 58.519 55.000 0.00 0.00 35.75 4.04
489 499 0.528466 AGCATATGCACTCCGTGTCG 60.528 55.000 28.62 0.00 45.16 4.35
521 532 8.518702 TGCATGCATTTTGTTCATAGTTAACTA 58.481 29.630 18.46 17.41 0.00 2.24
523 534 7.116090 TGTGCATGCATTTTGTTCATAGTTAAC 59.884 33.333 25.64 4.45 0.00 2.01
549 560 4.692625 GCTTATGCCATGTCGATTATGACT 59.307 41.667 12.56 2.26 39.64 3.41
552 563 5.220284 CGTAGCTTATGCCATGTCGATTATG 60.220 44.000 0.00 5.83 40.80 1.90
579 590 2.112380 TGTATGAGTGCACACCCATG 57.888 50.000 21.04 0.00 31.98 3.66
585 596 9.476202 GTATAAATACAGATGTATGAGTGCACA 57.524 33.333 21.04 0.00 40.78 4.57
600 611 6.412943 CGAGGTACGTGTGTGTATAAATACAG 59.587 42.308 0.00 0.00 39.26 2.74
618 629 3.791887 CGATGATCTTGTGTTCGAGGTAC 59.208 47.826 0.00 0.00 31.74 3.34
624 635 1.061131 GTGGCGATGATCTTGTGTTCG 59.939 52.381 0.00 0.00 0.00 3.95
640 651 1.809684 ACCTTAGCTTTTCTCGTGGC 58.190 50.000 0.00 0.00 0.00 5.01
742 754 6.594788 ACCAAACAAGTAATCGGTCTACTA 57.405 37.500 0.00 0.00 0.00 1.82
750 762 5.856126 TCTGCTAACCAAACAAGTAATCG 57.144 39.130 0.00 0.00 0.00 3.34
769 781 6.603237 TGTCATAACCGAAAGCATTATCTG 57.397 37.500 0.00 0.00 0.00 2.90
784 796 6.349300 TCTAAGCCAAGGAAGATGTCATAAC 58.651 40.000 0.00 0.00 0.00 1.89
800 812 1.354031 TGGGAAACATGCTCTAAGCCA 59.646 47.619 0.00 0.00 41.51 4.75
935 974 7.467557 TCGAAACTGTTAATTAACGACAAGT 57.532 32.000 20.51 15.68 39.00 3.16
961 1000 1.610554 TAACCCGAGCTTTCCTCCCG 61.611 60.000 0.00 0.00 37.27 5.14
970 1009 1.605058 ATCACGCACTAACCCGAGCT 61.605 55.000 0.00 0.00 0.00 4.09
1023 1062 2.308722 ACCAATCAGACCCGGCCAT 61.309 57.895 2.24 0.00 0.00 4.40
1042 1081 3.243168 TGAACTGCTGCATTCACTTCAAC 60.243 43.478 17.52 0.00 29.89 3.18
1043 1082 2.950975 TGAACTGCTGCATTCACTTCAA 59.049 40.909 17.52 1.94 29.89 2.69
1048 1087 3.904571 TGATTTGAACTGCTGCATTCAC 58.095 40.909 19.74 12.89 34.61 3.18
1076 6756 2.317371 TCTGATATCAGGCCTCTCCC 57.683 55.000 28.30 0.00 43.91 4.30
1177 11523 2.194859 CATATCTATCAGGCCCTGGCT 58.805 52.381 11.68 1.19 41.60 4.75
1183 11530 4.357918 ACAACCACATATCTATCAGGCC 57.642 45.455 0.00 0.00 0.00 5.19
1192 11539 2.945668 GCAGGAGGAACAACCACATATC 59.054 50.000 0.00 0.00 42.04 1.63
1195 11542 0.478072 TGCAGGAGGAACAACCACAT 59.522 50.000 0.00 0.00 42.04 3.21
1196 11543 0.465460 GTGCAGGAGGAACAACCACA 60.465 55.000 0.00 0.00 42.04 4.17
1263 11610 5.297547 TCTAGCCTTTGATAATAACGGCAG 58.702 41.667 8.42 4.68 44.75 4.85
1289 11636 5.120674 CACACTCGCTCACTTTATTCAATCA 59.879 40.000 0.00 0.00 0.00 2.57
1347 11696 1.142936 TCAGGCATGCCCACATAGAT 58.857 50.000 33.14 9.27 33.67 1.98
1468 11818 6.655003 AGATAAAGGAAGACGCTCATCAAAAA 59.345 34.615 0.00 0.00 0.00 1.94
1473 11823 5.112686 ACAAGATAAAGGAAGACGCTCATC 58.887 41.667 0.00 0.00 0.00 2.92
1479 11833 7.258441 TGAGTCATACAAGATAAAGGAAGACG 58.742 38.462 0.00 0.00 0.00 4.18
1500 11854 5.793817 TGACATGGCGCTAATATTATGAGT 58.206 37.500 7.64 0.00 0.00 3.41
1604 11958 4.508461 TTTTCCACAAGCATGATCACTG 57.492 40.909 0.00 0.00 0.00 3.66
1658 12012 1.229820 ACTAGGGGTGGGACATGCA 60.230 57.895 0.00 0.00 44.52 3.96
1695 12050 7.119387 TGAGGACATAAGTGAGAGAGATGTAA 58.881 38.462 0.00 0.00 31.03 2.41
1722 12077 2.737783 ACTAAGCGACGAGAGATATCCG 59.262 50.000 0.00 0.00 0.00 4.18
1825 12187 3.881688 GTGATGATCAGTGGAGGAATTGG 59.118 47.826 0.09 0.00 0.00 3.16
1855 12217 9.653287 TCTTGTTGTAAATTCCTCTACTACATG 57.347 33.333 0.00 0.00 35.00 3.21
1880 12242 6.205658 AGTTGACCTCTTAAGCTGAACAATTC 59.794 38.462 0.00 0.00 0.00 2.17
1911 12273 8.654997 AGATTGTAATCTGGTGCTATCAGTAAT 58.345 33.333 6.33 0.00 43.81 1.89
1942 12304 3.202097 GGCAATCTTTCTAGCTCTGTCC 58.798 50.000 0.00 0.00 0.00 4.02
1963 12325 3.634397 TGGTCTAGATTCAGCAAAGGG 57.366 47.619 0.00 0.00 0.00 3.95
2077 12439 1.186200 AGCAGATTCAGCCAGTACGA 58.814 50.000 0.00 0.00 0.00 3.43
2082 12444 4.978083 ATGTTTTAGCAGATTCAGCCAG 57.022 40.909 0.00 0.00 0.00 4.85
2083 12445 5.010922 ACAAATGTTTTAGCAGATTCAGCCA 59.989 36.000 0.00 0.00 0.00 4.75
2122 12486 2.956913 TGTTATAGCGCCGTTACAACA 58.043 42.857 2.29 0.55 0.00 3.33
2124 12488 2.345041 CGTTGTTATAGCGCCGTTACAA 59.655 45.455 2.29 6.95 0.00 2.41
2181 12546 2.260822 ACCATCGGAGGGAAGATATGG 58.739 52.381 16.70 1.10 39.80 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.