Multiple sequence alignment - TraesCS6B01G465500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G465500 chr6B 100.000 2648 0 0 1 2648 716263625 716266272 0.000000e+00 4891.0
1 TraesCS6B01G465500 chr6B 78.392 398 64 14 999 1387 716313006 716313390 3.410000e-59 239.0
2 TraesCS6B01G465500 chr6A 83.297 1371 179 25 332 1675 614842542 614843889 0.000000e+00 1218.0
3 TraesCS6B01G465500 chr6A 82.882 1145 156 16 538 1679 614810459 614811566 0.000000e+00 992.0
4 TraesCS6B01G465500 chr6A 82.410 614 81 13 509 1101 614966717 614966110 6.540000e-141 510.0
5 TraesCS6B01G465500 chr6A 89.003 391 38 4 2258 2648 614812250 614812635 1.840000e-131 479.0
6 TraesCS6B01G465500 chr6A 85.208 480 41 7 1197 1676 614965993 614965544 1.440000e-127 466.0
7 TraesCS6B01G465500 chr6A 78.004 541 82 22 2111 2633 614844594 614845115 3.310000e-79 305.0
8 TraesCS6B01G465500 chr6A 83.392 283 31 8 1334 1610 614807246 614807518 5.660000e-62 248.0
9 TraesCS6B01G465500 chr6A 76.140 285 40 19 1723 2006 614811818 614812075 9.950000e-25 124.0
10 TraesCS6B01G465500 chr6A 81.757 148 25 2 135 281 614809927 614810073 3.580000e-24 122.0
11 TraesCS6B01G465500 chr6A 77.720 193 25 10 1723 1903 614965324 614965138 4.660000e-18 102.0
12 TraesCS6B01G465500 chr6D 81.352 1346 199 23 349 1671 470047140 470048456 0.000000e+00 1048.0
13 TraesCS6B01G465500 chr6D 81.282 1170 148 28 534 1676 470103400 470102275 0.000000e+00 881.0
14 TraesCS6B01G465500 chr6D 78.645 487 56 28 1985 2470 470049225 470049664 2.010000e-71 279.0
15 TraesCS6B01G465500 chr6D 91.878 197 16 0 2452 2648 470049940 470050136 2.600000e-70 276.0
16 TraesCS6B01G465500 chr6D 81.564 179 30 3 109 286 470046859 470047035 7.640000e-31 145.0
17 TraesCS6B01G465500 chrUn 81.363 1159 175 16 534 1674 310058005 310056870 0.000000e+00 905.0
18 TraesCS6B01G465500 chr5B 74.554 224 47 7 684 903 543298497 543298280 3.630000e-14 89.8
19 TraesCS6B01G465500 chr5B 85.542 83 8 3 822 903 543244691 543244612 1.690000e-12 84.2
20 TraesCS6B01G465500 chr5A 85.542 83 8 3 822 903 563254775 563254696 1.690000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G465500 chr6B 716263625 716266272 2647 False 4891.000000 4891 100.000000 1 2648 1 chr6B.!!$F1 2647
1 TraesCS6B01G465500 chr6A 614842542 614845115 2573 False 761.500000 1218 80.650500 332 2633 2 chr6A.!!$F2 2301
2 TraesCS6B01G465500 chr6A 614807246 614812635 5389 False 393.000000 992 82.634800 135 2648 5 chr6A.!!$F1 2513
3 TraesCS6B01G465500 chr6A 614965138 614966717 1579 True 359.333333 510 81.779333 509 1903 3 chr6A.!!$R1 1394
4 TraesCS6B01G465500 chr6D 470102275 470103400 1125 True 881.000000 881 81.282000 534 1676 1 chr6D.!!$R1 1142
5 TraesCS6B01G465500 chr6D 470046859 470050136 3277 False 437.000000 1048 83.359750 109 2648 4 chr6D.!!$F1 2539
6 TraesCS6B01G465500 chrUn 310056870 310058005 1135 True 905.000000 905 81.363000 534 1674 1 chrUn.!!$R1 1140

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.179000 AATAGCCTTGTCAGCTCCGG 59.821 55.0 0.00 0.0 41.83 5.14 F
108 109 0.182537 TTCGGGGGCCAACAGATATG 59.817 55.0 4.39 0.0 0.00 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1208 3946 0.036875 GCGGATAATTCCTCCCTGGG 59.963 60.0 6.33 6.33 40.17 4.45 R
1949 4926 0.041312 CGTGGGTTGCTCTTTTGACG 60.041 55.0 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.985538 TCATCCCTGGTATCCTTAAATGC 58.014 43.478 0.00 0.00 0.00 3.56
25 26 4.665009 TCATCCCTGGTATCCTTAAATGCT 59.335 41.667 0.00 0.00 0.00 3.79
26 27 5.134339 TCATCCCTGGTATCCTTAAATGCTT 59.866 40.000 0.00 0.00 0.00 3.91
27 28 5.048846 TCCCTGGTATCCTTAAATGCTTC 57.951 43.478 0.00 0.00 0.00 3.86
28 29 3.815401 CCCTGGTATCCTTAAATGCTTCG 59.185 47.826 0.00 0.00 0.00 3.79
29 30 4.444306 CCCTGGTATCCTTAAATGCTTCGA 60.444 45.833 0.00 0.00 0.00 3.71
31 32 5.453339 CCTGGTATCCTTAAATGCTTCGAGA 60.453 44.000 0.00 0.00 0.00 4.04
32 33 5.984725 TGGTATCCTTAAATGCTTCGAGAA 58.015 37.500 0.00 0.00 0.00 2.87
33 34 6.049149 TGGTATCCTTAAATGCTTCGAGAAG 58.951 40.000 8.39 8.39 41.24 2.85
51 52 2.532854 GCCCTGGGCTCTCAATAGA 58.467 57.895 30.42 0.00 46.69 1.98
69 70 7.911651 TCAATAGAGCTAGCATTAATAGCCTT 58.088 34.615 18.83 0.00 45.53 4.35
70 71 7.821359 TCAATAGAGCTAGCATTAATAGCCTTG 59.179 37.037 18.83 8.71 45.53 3.61
72 73 5.546526 AGAGCTAGCATTAATAGCCTTGTC 58.453 41.667 18.83 0.00 45.53 3.18
73 74 5.070981 AGAGCTAGCATTAATAGCCTTGTCA 59.929 40.000 18.83 0.00 45.53 3.58
74 75 5.303971 AGCTAGCATTAATAGCCTTGTCAG 58.696 41.667 18.83 0.00 45.53 3.51
75 76 4.083590 GCTAGCATTAATAGCCTTGTCAGC 60.084 45.833 10.63 0.00 39.82 4.26
76 77 4.162040 AGCATTAATAGCCTTGTCAGCT 57.838 40.909 6.34 0.00 44.49 4.24
78 79 3.251972 GCATTAATAGCCTTGTCAGCTCC 59.748 47.826 0.00 0.00 41.83 4.70
79 80 2.890808 TAATAGCCTTGTCAGCTCCG 57.109 50.000 0.00 0.00 41.83 4.63
80 81 0.179000 AATAGCCTTGTCAGCTCCGG 59.821 55.000 0.00 0.00 41.83 5.14
81 82 0.978146 ATAGCCTTGTCAGCTCCGGT 60.978 55.000 0.00 0.00 41.83 5.28
82 83 1.888436 TAGCCTTGTCAGCTCCGGTG 61.888 60.000 0.00 0.00 41.83 4.94
83 84 3.059982 CCTTGTCAGCTCCGGTGA 58.940 61.111 7.92 0.00 37.74 4.02
93 94 1.364171 CTCCGGTGAGCCTATTCGG 59.636 63.158 0.00 0.00 41.80 4.30
94 95 2.088674 CTCCGGTGAGCCTATTCGGG 62.089 65.000 0.00 0.00 40.92 5.14
95 96 2.421739 CGGTGAGCCTATTCGGGG 59.578 66.667 0.00 0.00 0.00 5.73
96 97 2.829592 GGTGAGCCTATTCGGGGG 59.170 66.667 0.00 0.00 0.00 5.40
101 102 2.518587 GCCTATTCGGGGGCCAAC 60.519 66.667 4.39 0.00 42.30 3.77
102 103 3.003230 CCTATTCGGGGGCCAACA 58.997 61.111 4.39 0.00 0.00 3.33
103 104 1.152963 CCTATTCGGGGGCCAACAG 60.153 63.158 4.39 0.00 0.00 3.16
104 105 1.632018 CCTATTCGGGGGCCAACAGA 61.632 60.000 4.39 0.00 0.00 3.41
105 106 0.474184 CTATTCGGGGGCCAACAGAT 59.526 55.000 4.39 0.00 0.00 2.90
107 108 1.149101 ATTCGGGGGCCAACAGATAT 58.851 50.000 4.39 0.00 0.00 1.63
108 109 0.182537 TTCGGGGGCCAACAGATATG 59.817 55.000 4.39 0.00 0.00 1.78
109 110 1.898574 CGGGGGCCAACAGATATGC 60.899 63.158 4.39 0.00 0.00 3.14
110 111 1.538666 GGGGGCCAACAGATATGCT 59.461 57.895 4.39 0.00 0.00 3.79
116 117 2.104792 GGCCAACAGATATGCTGGTAGA 59.895 50.000 11.24 0.00 44.58 2.59
117 118 3.134458 GCCAACAGATATGCTGGTAGAC 58.866 50.000 11.24 0.00 44.58 2.59
120 121 2.071688 CAGATATGCTGGTAGACCGC 57.928 55.000 8.11 8.11 41.07 5.68
122 123 1.341531 AGATATGCTGGTAGACCGCAC 59.658 52.381 16.67 7.88 43.94 5.34
123 124 1.341531 GATATGCTGGTAGACCGCACT 59.658 52.381 16.67 9.81 43.94 4.40
124 125 0.744874 TATGCTGGTAGACCGCACTC 59.255 55.000 16.67 0.00 43.94 3.51
125 126 1.961180 ATGCTGGTAGACCGCACTCC 61.961 60.000 16.67 0.00 43.94 3.85
126 127 2.352032 GCTGGTAGACCGCACTCCT 61.352 63.158 9.64 0.00 39.43 3.69
127 128 1.889530 GCTGGTAGACCGCACTCCTT 61.890 60.000 9.64 0.00 39.43 3.36
129 130 1.002087 CTGGTAGACCGCACTCCTTTT 59.998 52.381 0.00 0.00 39.43 2.27
131 132 2.633967 TGGTAGACCGCACTCCTTTTAA 59.366 45.455 0.00 0.00 39.43 1.52
132 133 2.998670 GGTAGACCGCACTCCTTTTAAC 59.001 50.000 0.00 0.00 0.00 2.01
133 134 2.180432 AGACCGCACTCCTTTTAACC 57.820 50.000 0.00 0.00 0.00 2.85
134 135 1.697982 AGACCGCACTCCTTTTAACCT 59.302 47.619 0.00 0.00 0.00 3.50
136 137 3.518303 AGACCGCACTCCTTTTAACCTAT 59.482 43.478 0.00 0.00 0.00 2.57
137 138 4.019591 AGACCGCACTCCTTTTAACCTATT 60.020 41.667 0.00 0.00 0.00 1.73
138 139 4.659115 ACCGCACTCCTTTTAACCTATTT 58.341 39.130 0.00 0.00 0.00 1.40
148 2696 7.757611 TCCTTTTAACCTATTTGTGGACCTTA 58.242 34.615 0.00 0.00 0.00 2.69
158 2706 3.981071 TGTGGACCTTACATCTCCTTG 57.019 47.619 0.00 0.00 0.00 3.61
160 2708 4.422057 TGTGGACCTTACATCTCCTTGTA 58.578 43.478 0.00 0.00 0.00 2.41
162 2710 3.446161 TGGACCTTACATCTCCTTGTACG 59.554 47.826 0.00 0.00 31.98 3.67
187 2735 4.040068 GGATCAGGATGCGACAGC 57.960 61.111 0.00 0.00 45.41 4.40
188 2736 1.445095 GGATCAGGATGCGACAGCT 59.555 57.895 0.00 0.00 45.42 4.24
194 2742 0.901124 AGGATGCGACAGCTCTTCTT 59.099 50.000 0.00 0.00 45.42 2.52
199 2747 1.276415 GCGACAGCTCTTCTTAGCAG 58.724 55.000 0.00 0.00 45.30 4.24
207 2755 4.934001 CAGCTCTTCTTAGCAGTTGATGAA 59.066 41.667 0.00 0.00 45.30 2.57
210 2758 6.149142 AGCTCTTCTTAGCAGTTGATGAAAAG 59.851 38.462 0.00 0.00 45.30 2.27
215 2763 8.621532 TTCTTAGCAGTTGATGAAAAGTATGT 57.378 30.769 0.00 0.00 0.00 2.29
220 2769 8.430801 AGCAGTTGATGAAAAGTATGTCTATC 57.569 34.615 0.00 0.00 0.00 2.08
231 2780 4.799678 AGTATGTCTATCGTATGCTGCAC 58.200 43.478 3.57 0.00 0.00 4.57
232 2781 3.733443 ATGTCTATCGTATGCTGCACA 57.267 42.857 3.57 0.00 0.00 4.57
233 2782 3.084070 TGTCTATCGTATGCTGCACAG 57.916 47.619 3.57 0.00 0.00 3.66
246 2795 0.689055 TGCACAGTTGGCTCTCTGAT 59.311 50.000 10.05 0.00 35.84 2.90
249 2798 2.898705 CACAGTTGGCTCTCTGATACC 58.101 52.381 10.05 0.00 35.84 2.73
286 2835 4.584743 ACACCAAAGAAAAGATGTTCTCCC 59.415 41.667 0.00 0.00 36.84 4.30
287 2836 3.821033 ACCAAAGAAAAGATGTTCTCCCG 59.179 43.478 0.00 0.00 36.84 5.14
296 2863 1.474077 GATGTTCTCCCGCAGCAAAAT 59.526 47.619 0.00 0.00 0.00 1.82
298 2865 2.722094 TGTTCTCCCGCAGCAAAATAT 58.278 42.857 0.00 0.00 0.00 1.28
300 2867 3.509575 TGTTCTCCCGCAGCAAAATATTT 59.490 39.130 0.00 0.00 0.00 1.40
301 2868 4.105486 GTTCTCCCGCAGCAAAATATTTC 58.895 43.478 0.10 0.00 0.00 2.17
310 2877 5.230726 CGCAGCAAAATATTTCAATCCTCAC 59.769 40.000 0.10 0.00 0.00 3.51
312 2879 6.628844 GCAGCAAAATATTTCAATCCTCACCT 60.629 38.462 0.10 0.00 0.00 4.00
316 2883 7.614494 CAAAATATTTCAATCCTCACCTGGTT 58.386 34.615 0.10 0.00 0.00 3.67
320 2887 4.927267 TTCAATCCTCACCTGGTTACAT 57.073 40.909 0.00 0.00 0.00 2.29
321 2888 4.927267 TCAATCCTCACCTGGTTACATT 57.073 40.909 0.00 0.00 0.00 2.71
322 2889 5.255397 TCAATCCTCACCTGGTTACATTT 57.745 39.130 0.00 0.00 0.00 2.32
323 2890 5.009631 TCAATCCTCACCTGGTTACATTTG 58.990 41.667 0.00 0.00 0.00 2.32
324 2891 2.790433 TCCTCACCTGGTTACATTTGC 58.210 47.619 0.00 0.00 0.00 3.68
325 2892 2.107378 TCCTCACCTGGTTACATTTGCA 59.893 45.455 0.00 0.00 0.00 4.08
328 2922 2.884012 TCACCTGGTTACATTTGCAGTG 59.116 45.455 0.00 0.14 0.00 3.66
329 2923 1.613437 ACCTGGTTACATTTGCAGTGC 59.387 47.619 8.58 8.58 0.00 4.40
340 2934 0.319900 TTGCAGTGCTCTTCTCCGTC 60.320 55.000 17.60 0.00 0.00 4.79
341 2935 1.290324 GCAGTGCTCTTCTCCGTCA 59.710 57.895 8.18 0.00 0.00 4.35
343 2937 1.674221 GCAGTGCTCTTCTCCGTCAAT 60.674 52.381 8.18 0.00 0.00 2.57
362 2956 7.375834 CGTCAATTAGCTATGTACCTTCCATA 58.624 38.462 0.00 0.00 0.00 2.74
403 2999 3.321497 CACCAGTCACAGAGAAGCTTAC 58.679 50.000 0.00 0.00 0.00 2.34
421 3017 4.627467 GCTTACAGTGAAGACGATGTCAAT 59.373 41.667 0.00 0.00 34.60 2.57
432 3028 7.763985 TGAAGACGATGTCAATGTTACATATGT 59.236 33.333 13.93 13.93 37.69 2.29
461 3057 0.321671 TTGTACTGCTGTCCTGGAGC 59.678 55.000 0.00 0.00 36.95 4.70
467 3063 0.473755 TGCTGTCCTGGAGCTTTTCA 59.526 50.000 9.08 0.00 37.35 2.69
468 3064 1.163554 GCTGTCCTGGAGCTTTTCAG 58.836 55.000 0.00 0.61 33.37 3.02
506 3102 2.032071 CAAGGGTCCGCGGAGTTT 59.968 61.111 31.97 19.93 0.00 2.66
508 3104 2.513259 AAGGGTCCGCGGAGTTTCA 61.513 57.895 31.97 1.85 0.00 2.69
509 3105 1.838073 AAGGGTCCGCGGAGTTTCAT 61.838 55.000 31.97 13.53 0.00 2.57
513 3109 0.953960 GTCCGCGGAGTTTCATGGTT 60.954 55.000 31.97 0.00 0.00 3.67
514 3110 0.609151 TCCGCGGAGTTTCATGGTTA 59.391 50.000 27.28 0.00 0.00 2.85
521 3120 4.083003 GCGGAGTTTCATGGTTATCAACAA 60.083 41.667 0.00 0.00 0.00 2.83
524 3123 6.920758 CGGAGTTTCATGGTTATCAACAAAAA 59.079 34.615 0.00 0.00 0.00 1.94
593 3279 0.955428 TGTCCGCAACAGGAAGCATC 60.955 55.000 0.00 0.00 42.77 3.91
669 3355 0.890542 TGGCGCATGAAGTCTTGCTT 60.891 50.000 10.83 0.00 42.66 3.91
709 3395 6.354794 ACAAAGTTAGTGCTCCAGTATGTA 57.645 37.500 0.00 0.00 0.00 2.29
725 3412 6.180472 CAGTATGTAAAAGATGGGTGGAAGT 58.820 40.000 0.00 0.00 0.00 3.01
728 3415 5.570205 TGTAAAAGATGGGTGGAAGTACA 57.430 39.130 0.00 0.00 0.00 2.90
730 3417 6.366340 TGTAAAAGATGGGTGGAAGTACAAA 58.634 36.000 0.00 0.00 0.00 2.83
734 3421 7.703058 AAAGATGGGTGGAAGTACAAAATAG 57.297 36.000 0.00 0.00 0.00 1.73
759 3446 8.308207 AGAAGATGTTTCTACTTACAGGAAGTC 58.692 37.037 0.00 0.00 45.81 3.01
780 3467 1.072266 AATGACAACAGGGGCCAGTA 58.928 50.000 4.39 0.00 0.00 2.74
790 3477 2.771943 CAGGGGCCAGTATACTCTTGAA 59.228 50.000 4.39 0.00 0.00 2.69
809 3496 1.216064 ATGCCAAGGATGCTACCAGA 58.784 50.000 0.00 0.00 0.00 3.86
831 3518 2.322638 CTGGGCTGGAGCTTAGAGGC 62.323 65.000 0.00 4.67 41.70 4.70
888 3575 3.857052 CCACGGATTTCTGCTACTACAA 58.143 45.455 0.00 0.00 0.00 2.41
889 3576 4.442706 CCACGGATTTCTGCTACTACAAT 58.557 43.478 0.00 0.00 0.00 2.71
912 3599 2.943690 CAAGGGTGCATCTCATTCTCAG 59.056 50.000 0.00 0.00 0.00 3.35
930 3617 2.400962 GCATGGATCGCAGTGCACA 61.401 57.895 21.04 8.52 37.52 4.57
933 3620 0.393402 ATGGATCGCAGTGCACACAT 60.393 50.000 21.04 10.48 0.00 3.21
958 3663 0.682209 ATGTCCTCATGCTTGGTGCC 60.682 55.000 0.00 0.00 42.00 5.01
959 3664 2.046023 TCCTCATGCTTGGTGCCG 60.046 61.111 0.00 0.00 42.00 5.69
1005 3710 3.996921 ATCCAGTGCAGAGAAATGTCT 57.003 42.857 0.00 0.00 36.55 3.41
1015 3720 6.036517 GTGCAGAGAAATGTCTAACTACATGG 59.963 42.308 0.00 0.00 39.98 3.66
1016 3721 5.007136 GCAGAGAAATGTCTAACTACATGGC 59.993 44.000 0.00 0.00 39.98 4.40
1023 3728 3.129813 TGTCTAACTACATGGCGTACCTG 59.870 47.826 0.00 0.00 36.63 4.00
1028 3733 1.407618 CTACATGGCGTACCTGCTGTA 59.592 52.381 0.00 0.00 36.63 2.74
1058 3763 2.617308 CTGAGATGTTAATGGCAGGCAG 59.383 50.000 1.89 0.00 0.00 4.85
1068 3773 2.438075 GCAGGCAGCAGAAGGAGG 60.438 66.667 0.00 0.00 44.79 4.30
1079 3784 2.811873 GCAGAAGGAGGCTTTTCACAGA 60.812 50.000 13.09 0.00 0.00 3.41
1083 3788 1.353694 AGGAGGCTTTTCACAGATGCT 59.646 47.619 0.00 0.00 0.00 3.79
1086 3791 3.950395 GGAGGCTTTTCACAGATGCTTAT 59.050 43.478 0.00 0.00 0.00 1.73
1087 3792 4.201990 GGAGGCTTTTCACAGATGCTTATG 60.202 45.833 0.00 0.00 0.00 1.90
1088 3793 4.592942 AGGCTTTTCACAGATGCTTATGA 58.407 39.130 0.69 0.00 0.00 2.15
1089 3794 5.012239 AGGCTTTTCACAGATGCTTATGAA 58.988 37.500 0.69 0.00 0.00 2.57
1090 3795 5.125097 AGGCTTTTCACAGATGCTTATGAAG 59.875 40.000 0.69 0.00 32.90 3.02
1091 3796 5.124457 GGCTTTTCACAGATGCTTATGAAGA 59.876 40.000 0.69 0.00 32.90 2.87
1092 3797 6.349611 GGCTTTTCACAGATGCTTATGAAGAA 60.350 38.462 0.69 2.69 32.90 2.52
1093 3798 6.525976 GCTTTTCACAGATGCTTATGAAGAAC 59.474 38.462 0.69 0.00 32.90 3.01
1094 3799 7.574592 GCTTTTCACAGATGCTTATGAAGAACT 60.575 37.037 0.69 0.00 32.90 3.01
1095 3800 6.732531 TTCACAGATGCTTATGAAGAACTG 57.267 37.500 0.69 0.00 33.81 3.16
1098 3803 5.293814 CACAGATGCTTATGAAGAACTGGAG 59.706 44.000 0.69 0.00 32.78 3.86
1129 3834 1.607509 GCATCATCATCCAGGGAGACG 60.608 57.143 0.00 0.00 0.00 4.18
1175 3898 5.104776 AGCTTACACAGAGGATAATTGCTGA 60.105 40.000 0.00 0.00 32.86 4.26
1181 3904 2.441001 AGAGGATAATTGCTGAGGTGGG 59.559 50.000 0.00 0.00 0.00 4.61
1191 3914 2.529389 GAGGTGGGTGGTGGAGGT 60.529 66.667 0.00 0.00 0.00 3.85
1193 3916 4.660938 GGTGGGTGGTGGAGGTGC 62.661 72.222 0.00 0.00 0.00 5.01
1206 3944 0.605589 GAGGTGCAGGTACCCAACAC 60.606 60.000 17.19 17.19 41.83 3.32
1208 3946 1.602605 GTGCAGGTACCCAACACCC 60.603 63.158 8.74 0.00 36.67 4.61
1209 3947 2.035155 GCAGGTACCCAACACCCC 59.965 66.667 8.74 0.00 36.67 4.95
1239 3977 1.659622 TTATCCGCGACGCTTGGAGA 61.660 55.000 19.02 12.44 34.75 3.71
1263 4001 6.927294 ATTTCCAAAGTGTTATCGGATCTC 57.073 37.500 0.00 0.00 0.00 2.75
1272 4010 3.637229 TGTTATCGGATCTCCCTGAAGAC 59.363 47.826 0.00 0.00 0.00 3.01
1283 4021 2.303022 TCCCTGAAGACAAGATGTGGAC 59.697 50.000 0.00 0.00 0.00 4.02
1290 4028 4.630644 AGACAAGATGTGGACTGTGATT 57.369 40.909 0.00 0.00 0.00 2.57
1341 4079 2.030262 GCCGCTAGATGCAGAGGG 59.970 66.667 0.00 0.00 43.06 4.30
1468 4206 1.271001 TGGATCATCATCGCCATCACC 60.271 52.381 0.00 0.00 0.00 4.02
1469 4207 1.271001 GGATCATCATCGCCATCACCA 60.271 52.381 0.00 0.00 0.00 4.17
1470 4208 2.617276 GGATCATCATCGCCATCACCAT 60.617 50.000 0.00 0.00 0.00 3.55
1471 4209 2.174363 TCATCATCGCCATCACCATC 57.826 50.000 0.00 0.00 0.00 3.51
1472 4210 0.794473 CATCATCGCCATCACCATCG 59.206 55.000 0.00 0.00 0.00 3.84
1473 4211 0.952497 ATCATCGCCATCACCATCGC 60.952 55.000 0.00 0.00 0.00 4.58
1484 4222 2.202932 CCATCGCAACGGAGGAGG 60.203 66.667 0.00 0.00 0.00 4.30
1632 4373 3.711190 ACCATGACAGTGATGGCATAGTA 59.289 43.478 18.33 0.00 43.82 1.82
1676 4420 1.605710 GATGATTCTGGGTGCCAATCG 59.394 52.381 0.00 0.00 30.80 3.34
1677 4421 0.327924 TGATTCTGGGTGCCAATCGT 59.672 50.000 0.00 0.00 30.80 3.73
1686 4547 1.610624 GGTGCCAATCGTCCTTTCTGA 60.611 52.381 0.00 0.00 0.00 3.27
1717 4579 5.281693 TCAATAAAGAGTGTGCAATGTCG 57.718 39.130 0.00 0.00 0.00 4.35
1718 4580 3.747099 ATAAAGAGTGTGCAATGTCGC 57.253 42.857 0.00 0.00 0.00 5.19
1719 4581 0.235665 AAAGAGTGTGCAATGTCGCG 59.764 50.000 0.00 0.00 33.35 5.87
1737 4696 0.875059 CGTGTTTTGGAGCCTCCTTC 59.125 55.000 12.94 0.62 37.46 3.46
1746 4705 1.484653 GGAGCCTCCTTCCTTCTTCTC 59.515 57.143 2.64 0.00 32.53 2.87
1749 4708 4.223144 GAGCCTCCTTCCTTCTTCTCTAT 58.777 47.826 0.00 0.00 0.00 1.98
1765 4724 7.232188 TCTTCTCTATCCTGTACCGTGAATAT 58.768 38.462 0.00 0.00 0.00 1.28
1766 4725 8.380867 TCTTCTCTATCCTGTACCGTGAATATA 58.619 37.037 0.00 0.00 0.00 0.86
1780 4739 6.810182 ACCGTGAATATATATTACCGAAGCAC 59.190 38.462 19.92 14.80 0.00 4.40
1822 4781 6.040616 TCGGATCTCTAATTTACAAGGGAGAC 59.959 42.308 0.00 0.00 33.56 3.36
1825 4784 7.070074 GGATCTCTAATTTACAAGGGAGACAGA 59.930 40.741 0.00 0.00 33.56 3.41
1826 4785 7.411486 TCTCTAATTTACAAGGGAGACAGAG 57.589 40.000 0.00 0.00 0.00 3.35
1834 4793 2.880890 CAAGGGAGACAGAGGTTTTGTG 59.119 50.000 0.00 0.00 0.00 3.33
1846 4820 5.176223 CAGAGGTTTTGTGCATTGTTCATTC 59.824 40.000 0.00 0.00 0.00 2.67
1854 4828 2.562298 TGCATTGTTCATTCAGTTCCCC 59.438 45.455 0.00 0.00 0.00 4.81
1855 4829 2.415893 GCATTGTTCATTCAGTTCCCCG 60.416 50.000 0.00 0.00 0.00 5.73
1856 4830 2.649531 TTGTTCATTCAGTTCCCCGT 57.350 45.000 0.00 0.00 0.00 5.28
1857 4831 2.178912 TGTTCATTCAGTTCCCCGTC 57.821 50.000 0.00 0.00 0.00 4.79
1858 4832 1.418264 TGTTCATTCAGTTCCCCGTCA 59.582 47.619 0.00 0.00 0.00 4.35
1859 4833 2.039746 TGTTCATTCAGTTCCCCGTCAT 59.960 45.455 0.00 0.00 0.00 3.06
1860 4834 3.262151 TGTTCATTCAGTTCCCCGTCATA 59.738 43.478 0.00 0.00 0.00 2.15
1861 4835 3.819564 TCATTCAGTTCCCCGTCATAG 57.180 47.619 0.00 0.00 0.00 2.23
1869 4843 4.037684 CAGTTCCCCGTCATAGTAGGTTAG 59.962 50.000 0.00 0.00 0.00 2.34
1874 4848 4.403432 CCCCGTCATAGTAGGTTAGTTTCA 59.597 45.833 0.00 0.00 0.00 2.69
1884 4858 6.937392 AGTAGGTTAGTTTCATCAGTTCCTC 58.063 40.000 0.00 0.00 0.00 3.71
1897 4871 4.072131 TCAGTTCCTCCTATTGTTTGTGC 58.928 43.478 0.00 0.00 0.00 4.57
1903 4880 2.749621 CTCCTATTGTTTGTGCCTCACC 59.250 50.000 0.00 0.00 32.73 4.02
1904 4881 1.818674 CCTATTGTTTGTGCCTCACCC 59.181 52.381 0.00 0.00 32.73 4.61
1905 4882 2.513753 CTATTGTTTGTGCCTCACCCA 58.486 47.619 0.00 0.00 32.73 4.51
1906 4883 1.039856 ATTGTTTGTGCCTCACCCAC 58.960 50.000 0.00 0.00 32.73 4.61
1907 4884 0.323816 TTGTTTGTGCCTCACCCACA 60.324 50.000 0.00 0.00 41.11 4.17
1910 4887 3.289797 TTGTGCCTCACCCACAAAA 57.710 47.368 4.65 0.00 46.66 2.44
1912 4889 1.039068 TGTGCCTCACCCACAAAATG 58.961 50.000 0.00 0.00 40.00 2.32
1928 4905 4.518970 ACAAAATGGCTACGTGAAAGATGT 59.481 37.500 0.00 0.00 0.00 3.06
1936 4913 4.213482 GCTACGTGAAAGATGTGGTTTTCT 59.787 41.667 0.00 0.00 35.02 2.52
1949 4926 5.816919 TGTGGTTTTCTTTCATTCTCGTTC 58.183 37.500 0.00 0.00 0.00 3.95
1965 4943 1.333791 CGTTCGTCAAAAGAGCAACCC 60.334 52.381 0.00 0.00 0.00 4.11
1981 4965 4.216902 AGCAACCCACGGTTTCTAATTAAC 59.783 41.667 0.00 0.00 44.33 2.01
1983 5226 5.695818 CAACCCACGGTTTCTAATTAACAG 58.304 41.667 0.00 0.00 44.33 3.16
1999 5242 9.469807 CTAATTAACAGTTGGTGCAACAAATTA 57.530 29.630 20.89 16.28 45.66 1.40
2006 5249 5.359576 AGTTGGTGCAACAAATTAGTCTGAA 59.640 36.000 20.89 0.00 45.66 3.02
2007 5250 5.437289 TGGTGCAACAAATTAGTCTGAAG 57.563 39.130 0.00 0.00 39.98 3.02
2011 5254 5.621228 GTGCAACAAATTAGTCTGAAGAACG 59.379 40.000 0.00 0.00 36.32 3.95
2012 5255 5.295787 TGCAACAAATTAGTCTGAAGAACGT 59.704 36.000 0.00 0.00 0.00 3.99
2018 5261 6.633668 AATTAGTCTGAAGAACGTCATTCG 57.366 37.500 7.85 4.20 42.69 3.34
2030 5274 2.661594 CGTCATTCGTCTGACAGAACA 58.338 47.619 6.76 0.00 44.69 3.18
2032 5276 3.120286 CGTCATTCGTCTGACAGAACAAG 59.880 47.826 6.76 0.00 44.69 3.16
2049 5293 7.148573 ACAGAACAAGATGTGCTCTAATAAACG 60.149 37.037 0.00 0.00 32.81 3.60
2053 5297 5.599999 AGATGTGCTCTAATAAACGAGGT 57.400 39.130 0.00 0.00 30.26 3.85
2060 5304 7.067859 TGTGCTCTAATAAACGAGGTACTGTAT 59.932 37.037 0.00 0.00 41.55 2.29
2068 5312 3.782046 ACGAGGTACTGTATGCATCAAC 58.218 45.455 0.19 0.00 41.55 3.18
2069 5313 2.789339 CGAGGTACTGTATGCATCAACG 59.211 50.000 0.19 0.00 41.55 4.10
2087 5437 1.336755 ACGACAATTTCAACCCAGTGC 59.663 47.619 0.00 0.00 0.00 4.40
2088 5438 1.662876 CGACAATTTCAACCCAGTGCG 60.663 52.381 0.00 0.00 0.00 5.34
2089 5439 1.606668 GACAATTTCAACCCAGTGCGA 59.393 47.619 0.00 0.00 0.00 5.10
2090 5440 2.228822 GACAATTTCAACCCAGTGCGAT 59.771 45.455 0.00 0.00 0.00 4.58
2091 5441 3.417101 ACAATTTCAACCCAGTGCGATA 58.583 40.909 0.00 0.00 0.00 2.92
2093 5443 2.552599 TTTCAACCCAGTGCGATACA 57.447 45.000 0.00 0.00 0.00 2.29
2094 5444 2.779755 TTCAACCCAGTGCGATACAT 57.220 45.000 0.00 0.00 0.00 2.29
2096 5446 0.378257 CAACCCAGTGCGATACATGC 59.622 55.000 0.00 0.00 0.00 4.06
2097 5447 0.748005 AACCCAGTGCGATACATGCC 60.748 55.000 0.00 0.00 0.00 4.40
2098 5448 1.146930 CCCAGTGCGATACATGCCT 59.853 57.895 0.00 0.00 0.00 4.75
2099 5449 0.464373 CCCAGTGCGATACATGCCTT 60.464 55.000 0.00 0.00 0.00 4.35
2100 5450 0.659427 CCAGTGCGATACATGCCTTG 59.341 55.000 0.00 0.00 0.00 3.61
2101 5451 1.372582 CAGTGCGATACATGCCTTGT 58.627 50.000 0.00 0.00 42.62 3.16
2102 5452 2.549926 CAGTGCGATACATGCCTTGTA 58.450 47.619 0.00 0.00 44.71 2.41
2103 5453 2.285220 CAGTGCGATACATGCCTTGTAC 59.715 50.000 0.00 0.00 43.46 2.90
2104 5454 1.257936 GTGCGATACATGCCTTGTACG 59.742 52.381 0.00 6.63 43.46 3.67
2105 5455 1.134936 TGCGATACATGCCTTGTACGT 60.135 47.619 0.00 0.00 43.46 3.57
2106 5456 2.099427 TGCGATACATGCCTTGTACGTA 59.901 45.455 0.00 0.00 43.46 3.57
2107 5457 2.470257 GCGATACATGCCTTGTACGTAC 59.530 50.000 18.90 18.90 43.46 3.67
2108 5458 3.697982 CGATACATGCCTTGTACGTACA 58.302 45.455 24.10 24.10 43.46 2.90
2109 5459 3.729217 CGATACATGCCTTGTACGTACAG 59.271 47.826 26.04 17.66 43.46 2.74
2128 5478 6.091713 CGTACAGGGTATGTAACTTCCTTTTG 59.908 42.308 0.00 0.00 45.88 2.44
2133 5483 5.106277 GGGTATGTAACTTCCTTTTGACTGC 60.106 44.000 0.00 0.00 0.00 4.40
2144 5495 4.755123 TCCTTTTGACTGCTTGCTACTTAC 59.245 41.667 0.00 0.00 0.00 2.34
2150 5501 1.923204 CTGCTTGCTACTTACAGAGCG 59.077 52.381 0.00 0.00 41.83 5.03
2154 5505 0.815734 TGCTACTTACAGAGCGTCCC 59.184 55.000 0.00 0.00 41.83 4.46
2155 5506 0.102663 GCTACTTACAGAGCGTCCCC 59.897 60.000 0.00 0.00 0.00 4.81
2162 5513 1.450312 CAGAGCGTCCCCATGGTTC 60.450 63.158 11.73 0.00 0.00 3.62
2167 5527 0.970427 GCGTCCCCATGGTTCCATTT 60.970 55.000 11.73 0.00 0.00 2.32
2168 5528 1.555967 CGTCCCCATGGTTCCATTTT 58.444 50.000 11.73 0.00 0.00 1.82
2169 5529 1.204467 CGTCCCCATGGTTCCATTTTG 59.796 52.381 11.73 0.00 0.00 2.44
2170 5530 1.066215 GTCCCCATGGTTCCATTTTGC 60.066 52.381 11.73 0.00 0.00 3.68
2171 5531 0.982704 CCCCATGGTTCCATTTTGCA 59.017 50.000 11.73 0.00 0.00 4.08
2175 5535 1.661617 CATGGTTCCATTTTGCATGCG 59.338 47.619 14.09 0.00 0.00 4.73
2178 5538 1.070038 GTTCCATTTTGCATGCGTGG 58.930 50.000 19.33 19.33 0.00 4.94
2179 5539 0.669932 TTCCATTTTGCATGCGTGGC 60.670 50.000 20.14 0.62 0.00 5.01
2183 5543 0.179129 ATTTTGCATGCGTGGCTAGC 60.179 50.000 14.09 6.04 0.00 3.42
2199 5559 4.574013 TGGCTAGCATTGTTTTGTTTTTGG 59.426 37.500 18.24 0.00 0.00 3.28
2216 5576 8.995419 TGTTTTTGGAAAAAGAAAAGAAAACG 57.005 26.923 0.00 0.00 38.44 3.60
2217 5577 7.588123 TGTTTTTGGAAAAAGAAAAGAAAACGC 59.412 29.630 0.00 0.00 38.44 4.84
2218 5578 6.787085 TTTGGAAAAAGAAAAGAAAACGCA 57.213 29.167 0.00 0.00 0.00 5.24
2219 5579 5.771602 TGGAAAAAGAAAAGAAAACGCAC 57.228 34.783 0.00 0.00 0.00 5.34
2226 5586 5.248870 AGAAAAGAAAACGCACTCATGTT 57.751 34.783 0.00 0.00 0.00 2.71
2228 5588 5.743872 AGAAAAGAAAACGCACTCATGTTTC 59.256 36.000 0.00 0.00 37.31 2.78
2239 5599 1.197721 CTCATGTTTCGCACTGGGTTC 59.802 52.381 0.00 0.00 0.00 3.62
2241 5601 1.541147 CATGTTTCGCACTGGGTTCAT 59.459 47.619 0.00 0.00 0.00 2.57
2244 5604 1.812571 GTTTCGCACTGGGTTCATCAT 59.187 47.619 0.00 0.00 0.00 2.45
2253 5613 5.121811 CACTGGGTTCATCATCTCCTTTAG 58.878 45.833 0.00 0.00 0.00 1.85
2260 5620 5.378230 TCATCATCTCCTTTAGCCAATGT 57.622 39.130 0.00 0.00 0.00 2.71
2277 5637 5.229423 CCAATGTTTTGGTATGTCAAGTGG 58.771 41.667 0.00 0.00 46.27 4.00
2284 5644 3.609853 TGGTATGTCAAGTGGAAGATGC 58.390 45.455 0.00 0.00 0.00 3.91
2300 5660 1.281199 ATGCCCACTGCCTGGTCATA 61.281 55.000 0.00 0.00 38.60 2.15
2313 5673 2.267426 TGGTCATACTTTGATGCGACG 58.733 47.619 0.00 0.00 36.54 5.12
2375 5735 0.686224 TTTGGGGCAAATTCCTGCAG 59.314 50.000 6.78 6.78 44.52 4.41
2381 5741 1.203287 GGCAAATTCCTGCAGAAGTCC 59.797 52.381 17.39 2.99 44.52 3.85
2402 5770 4.989797 TCCTGCAATTGCTTGTTTGTATTG 59.010 37.500 29.37 8.57 42.66 1.90
2403 5771 4.377635 CCTGCAATTGCTTGTTTGTATTGC 60.378 41.667 29.37 10.28 46.85 3.56
2404 5772 4.378774 TGCAATTGCTTGTTTGTATTGCT 58.621 34.783 29.37 0.00 46.81 3.91
2405 5773 5.536260 TGCAATTGCTTGTTTGTATTGCTA 58.464 33.333 29.37 1.93 46.81 3.49
2406 5774 6.164876 TGCAATTGCTTGTTTGTATTGCTAT 58.835 32.000 29.37 0.00 46.81 2.97
2407 5775 6.649973 TGCAATTGCTTGTTTGTATTGCTATT 59.350 30.769 29.37 0.00 46.81 1.73
2534 6202 2.503061 CATGCCACGGAGGGAGAG 59.497 66.667 0.00 0.00 43.00 3.20
2568 6236 1.328986 GCGGCTATGCTTCAAAGAGAC 59.671 52.381 0.00 0.00 0.00 3.36
2606 6274 1.078143 ATGGGGCGAGAGAAGTTGC 60.078 57.895 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.990526 AGCATTTAAGGATACCAGGGATG 58.009 43.478 0.00 0.00 37.17 3.51
4 5 5.635120 GAAGCATTTAAGGATACCAGGGAT 58.365 41.667 0.00 0.00 37.17 3.85
5 6 4.444306 CGAAGCATTTAAGGATACCAGGGA 60.444 45.833 0.00 0.00 37.17 4.20
7 8 4.703897 TCGAAGCATTTAAGGATACCAGG 58.296 43.478 0.00 0.00 37.17 4.45
8 9 5.601662 TCTCGAAGCATTTAAGGATACCAG 58.398 41.667 0.00 0.00 37.17 4.00
9 10 5.607939 TCTCGAAGCATTTAAGGATACCA 57.392 39.130 0.00 0.00 37.17 3.25
10 11 6.532365 CTTCTCGAAGCATTTAAGGATACC 57.468 41.667 0.00 0.00 37.17 2.73
24 25 2.124942 GCCCAGGGCTTCTCGAAG 60.125 66.667 24.99 2.34 46.69 3.79
42 43 7.398618 AGGCTATTAATGCTAGCTCTATTGAGA 59.601 37.037 17.23 1.06 42.73 3.27
43 44 7.555087 AGGCTATTAATGCTAGCTCTATTGAG 58.445 38.462 17.23 6.47 41.11 3.02
44 45 7.487822 AGGCTATTAATGCTAGCTCTATTGA 57.512 36.000 17.23 4.78 41.11 2.57
45 46 7.605691 ACAAGGCTATTAATGCTAGCTCTATTG 59.394 37.037 17.23 9.31 41.11 1.90
46 47 7.684529 ACAAGGCTATTAATGCTAGCTCTATT 58.315 34.615 17.23 9.99 41.11 1.73
48 49 6.267699 TGACAAGGCTATTAATGCTAGCTCTA 59.732 38.462 17.23 4.25 41.11 2.43
49 50 5.070981 TGACAAGGCTATTAATGCTAGCTCT 59.929 40.000 17.23 5.30 41.11 4.09
50 51 5.300752 TGACAAGGCTATTAATGCTAGCTC 58.699 41.667 17.23 0.00 41.11 4.09
51 52 5.296151 TGACAAGGCTATTAATGCTAGCT 57.704 39.130 17.23 0.00 41.11 3.32
52 53 4.083590 GCTGACAAGGCTATTAATGCTAGC 60.084 45.833 8.10 8.10 40.71 3.42
54 55 5.296151 AGCTGACAAGGCTATTAATGCTA 57.704 39.130 0.00 0.00 38.36 3.49
55 56 4.133078 GAGCTGACAAGGCTATTAATGCT 58.867 43.478 0.00 0.00 40.40 3.79
56 57 3.251972 GGAGCTGACAAGGCTATTAATGC 59.748 47.826 0.00 0.00 40.40 3.56
57 58 3.496130 CGGAGCTGACAAGGCTATTAATG 59.504 47.826 0.00 0.00 40.40 1.90
58 59 3.495100 CCGGAGCTGACAAGGCTATTAAT 60.495 47.826 0.00 0.00 40.40 1.40
60 61 1.412710 CCGGAGCTGACAAGGCTATTA 59.587 52.381 0.00 0.00 40.40 0.98
61 62 0.179000 CCGGAGCTGACAAGGCTATT 59.821 55.000 0.00 0.00 40.40 1.73
62 63 0.978146 ACCGGAGCTGACAAGGCTAT 60.978 55.000 9.46 0.00 40.40 2.97
63 64 1.609501 ACCGGAGCTGACAAGGCTA 60.610 57.895 9.46 0.00 40.40 3.93
64 65 2.925170 ACCGGAGCTGACAAGGCT 60.925 61.111 9.46 0.00 43.26 4.58
65 66 2.743928 CACCGGAGCTGACAAGGC 60.744 66.667 9.46 0.00 0.00 4.35
75 76 1.364171 CCGAATAGGCTCACCGGAG 59.636 63.158 9.46 0.00 42.49 4.63
76 77 2.131709 CCCGAATAGGCTCACCGGA 61.132 63.158 9.46 0.00 42.49 5.14
78 79 2.421739 CCCCGAATAGGCTCACCG 59.578 66.667 0.00 0.00 42.76 4.94
79 80 2.829592 CCCCCGAATAGGCTCACC 59.170 66.667 0.00 0.00 39.21 4.02
80 81 2.111251 GCCCCCGAATAGGCTCAC 59.889 66.667 0.00 0.00 46.14 3.51
85 86 1.152963 CTGTTGGCCCCCGAATAGG 60.153 63.158 0.00 0.00 40.63 2.57
86 87 0.474184 ATCTGTTGGCCCCCGAATAG 59.526 55.000 0.00 0.00 0.00 1.73
87 88 1.809133 TATCTGTTGGCCCCCGAATA 58.191 50.000 0.00 0.00 0.00 1.75
88 89 1.149101 ATATCTGTTGGCCCCCGAAT 58.851 50.000 0.00 0.00 0.00 3.34
89 90 0.182537 CATATCTGTTGGCCCCCGAA 59.817 55.000 0.00 0.00 0.00 4.30
90 91 1.836391 CATATCTGTTGGCCCCCGA 59.164 57.895 0.00 0.00 0.00 5.14
91 92 1.898574 GCATATCTGTTGGCCCCCG 60.899 63.158 0.00 0.00 0.00 5.73
93 94 0.825010 CCAGCATATCTGTTGGCCCC 60.825 60.000 0.00 0.00 45.27 5.80
94 95 2.724520 CCAGCATATCTGTTGGCCC 58.275 57.895 0.00 0.00 45.27 5.80
98 99 3.384668 CGGTCTACCAGCATATCTGTTG 58.615 50.000 0.00 0.00 41.25 3.33
99 100 2.224066 GCGGTCTACCAGCATATCTGTT 60.224 50.000 9.93 0.00 41.25 3.16
100 101 1.341531 GCGGTCTACCAGCATATCTGT 59.658 52.381 9.93 0.00 41.25 3.41
101 102 1.341209 TGCGGTCTACCAGCATATCTG 59.659 52.381 12.51 0.00 39.37 2.90
102 103 1.341531 GTGCGGTCTACCAGCATATCT 59.658 52.381 17.34 0.00 43.39 1.98
103 104 1.341531 AGTGCGGTCTACCAGCATATC 59.658 52.381 17.34 8.53 43.39 1.63
104 105 1.341531 GAGTGCGGTCTACCAGCATAT 59.658 52.381 17.34 11.60 43.39 1.78
105 106 0.744874 GAGTGCGGTCTACCAGCATA 59.255 55.000 17.34 0.00 43.39 3.14
107 108 2.646175 GGAGTGCGGTCTACCAGCA 61.646 63.158 12.51 12.51 40.97 4.41
108 109 1.889530 AAGGAGTGCGGTCTACCAGC 61.890 60.000 0.00 4.70 36.54 4.85
109 110 0.608640 AAAGGAGTGCGGTCTACCAG 59.391 55.000 0.00 0.00 35.14 4.00
110 111 1.053424 AAAAGGAGTGCGGTCTACCA 58.947 50.000 0.00 0.00 35.14 3.25
111 112 2.998670 GTTAAAAGGAGTGCGGTCTACC 59.001 50.000 0.00 0.00 0.00 3.18
112 113 2.998670 GGTTAAAAGGAGTGCGGTCTAC 59.001 50.000 0.00 0.00 0.00 2.59
113 114 2.901839 AGGTTAAAAGGAGTGCGGTCTA 59.098 45.455 0.00 0.00 0.00 2.59
116 117 3.994931 ATAGGTTAAAAGGAGTGCGGT 57.005 42.857 0.00 0.00 0.00 5.68
117 118 4.457949 ACAAATAGGTTAAAAGGAGTGCGG 59.542 41.667 0.00 0.00 0.00 5.69
120 121 6.072119 GGTCCACAAATAGGTTAAAAGGAGTG 60.072 42.308 0.00 0.00 0.00 3.51
122 123 6.246163 AGGTCCACAAATAGGTTAAAAGGAG 58.754 40.000 0.00 0.00 0.00 3.69
123 124 6.208840 AGGTCCACAAATAGGTTAAAAGGA 57.791 37.500 0.00 0.00 0.00 3.36
124 125 6.911250 AAGGTCCACAAATAGGTTAAAAGG 57.089 37.500 0.00 0.00 0.00 3.11
125 126 8.398878 TGTAAGGTCCACAAATAGGTTAAAAG 57.601 34.615 0.00 0.00 0.00 2.27
126 127 8.943594 ATGTAAGGTCCACAAATAGGTTAAAA 57.056 30.769 0.00 0.00 0.00 1.52
127 128 8.387813 AGATGTAAGGTCCACAAATAGGTTAAA 58.612 33.333 0.00 0.00 0.00 1.52
129 130 7.365295 GGAGATGTAAGGTCCACAAATAGGTTA 60.365 40.741 0.00 0.00 0.00 2.85
131 132 5.104485 GGAGATGTAAGGTCCACAAATAGGT 60.104 44.000 0.00 0.00 0.00 3.08
132 133 5.131142 AGGAGATGTAAGGTCCACAAATAGG 59.869 44.000 0.00 0.00 32.23 2.57
133 134 6.240549 AGGAGATGTAAGGTCCACAAATAG 57.759 41.667 0.00 0.00 32.23 1.73
134 135 6.012858 ACAAGGAGATGTAAGGTCCACAAATA 60.013 38.462 0.00 0.00 32.23 1.40
136 137 4.104102 ACAAGGAGATGTAAGGTCCACAAA 59.896 41.667 0.00 0.00 32.23 2.83
137 138 3.650942 ACAAGGAGATGTAAGGTCCACAA 59.349 43.478 0.00 0.00 32.23 3.33
138 139 3.248024 ACAAGGAGATGTAAGGTCCACA 58.752 45.455 0.00 0.00 32.23 4.17
148 2696 3.004839 CGATCATCCGTACAAGGAGATGT 59.995 47.826 0.00 0.00 44.55 3.06
158 2706 2.160205 TCCTGATCCGATCATCCGTAC 58.840 52.381 11.53 0.00 38.85 3.67
160 2708 1.547820 CATCCTGATCCGATCATCCGT 59.452 52.381 11.53 0.00 38.85 4.69
162 2710 1.738365 CGCATCCTGATCCGATCATCC 60.738 57.143 11.53 0.00 38.85 3.51
185 2733 4.815533 TCATCAACTGCTAAGAAGAGCT 57.184 40.909 0.00 0.00 43.27 4.09
187 2735 7.432350 ACTTTTCATCAACTGCTAAGAAGAG 57.568 36.000 0.00 0.00 0.00 2.85
188 2736 8.939929 CATACTTTTCATCAACTGCTAAGAAGA 58.060 33.333 0.00 0.00 0.00 2.87
194 2742 9.534565 GATAGACATACTTTTCATCAACTGCTA 57.465 33.333 0.00 0.00 0.00 3.49
207 2755 5.692204 GTGCAGCATACGATAGACATACTTT 59.308 40.000 0.00 0.00 41.38 2.66
210 2758 4.546570 TGTGCAGCATACGATAGACATAC 58.453 43.478 0.00 0.00 41.38 2.39
215 2763 3.447742 CAACTGTGCAGCATACGATAGA 58.552 45.455 0.00 0.00 41.38 1.98
220 2769 1.135315 GCCAACTGTGCAGCATACG 59.865 57.895 0.00 0.00 0.00 3.06
224 2773 1.598962 GAGAGCCAACTGTGCAGCA 60.599 57.895 0.00 0.00 0.00 4.41
231 2780 3.431486 GGAAGGTATCAGAGAGCCAACTG 60.431 52.174 0.00 0.00 35.72 3.16
232 2781 2.769095 GGAAGGTATCAGAGAGCCAACT 59.231 50.000 0.00 0.00 0.00 3.16
233 2782 2.501723 TGGAAGGTATCAGAGAGCCAAC 59.498 50.000 0.00 0.00 0.00 3.77
246 2795 3.181415 TGGTGTAGAGGAGTTGGAAGGTA 60.181 47.826 0.00 0.00 0.00 3.08
249 2798 4.040461 TCTTTGGTGTAGAGGAGTTGGAAG 59.960 45.833 0.00 0.00 0.00 3.46
286 2835 5.230726 GTGAGGATTGAAATATTTTGCTGCG 59.769 40.000 1.43 0.00 0.00 5.18
287 2836 5.521372 GGTGAGGATTGAAATATTTTGCTGC 59.479 40.000 1.43 0.00 0.00 5.25
296 2863 6.381498 TGTAACCAGGTGAGGATTGAAATA 57.619 37.500 0.00 0.00 0.00 1.40
298 2865 4.715534 TGTAACCAGGTGAGGATTGAAA 57.284 40.909 0.00 0.00 0.00 2.69
300 2867 4.927267 AATGTAACCAGGTGAGGATTGA 57.073 40.909 0.00 0.00 0.00 2.57
301 2868 4.380867 GCAAATGTAACCAGGTGAGGATTG 60.381 45.833 0.00 0.00 0.00 2.67
310 2877 1.888512 AGCACTGCAAATGTAACCAGG 59.111 47.619 3.30 0.00 0.00 4.45
312 2879 2.862541 AGAGCACTGCAAATGTAACCA 58.137 42.857 3.30 0.00 0.00 3.67
316 2883 3.338249 GGAGAAGAGCACTGCAAATGTA 58.662 45.455 3.30 0.00 0.00 2.29
320 2887 0.106708 ACGGAGAAGAGCACTGCAAA 59.893 50.000 3.30 0.00 0.00 3.68
321 2888 0.319900 GACGGAGAAGAGCACTGCAA 60.320 55.000 3.30 0.00 0.00 4.08
322 2889 1.290324 GACGGAGAAGAGCACTGCA 59.710 57.895 3.30 0.00 0.00 4.41
323 2890 0.319900 TTGACGGAGAAGAGCACTGC 60.320 55.000 0.00 0.00 0.00 4.40
324 2891 2.376808 ATTGACGGAGAAGAGCACTG 57.623 50.000 0.00 0.00 0.00 3.66
325 2892 3.677424 GCTAATTGACGGAGAAGAGCACT 60.677 47.826 0.00 0.00 0.00 4.40
328 2922 3.172229 AGCTAATTGACGGAGAAGAGC 57.828 47.619 0.00 0.00 0.00 4.09
329 2923 5.837437 ACATAGCTAATTGACGGAGAAGAG 58.163 41.667 0.00 0.00 0.00 2.85
340 2934 7.607607 TGCATATGGAAGGTACATAGCTAATTG 59.392 37.037 4.56 0.00 34.59 2.32
341 2935 7.689299 TGCATATGGAAGGTACATAGCTAATT 58.311 34.615 4.56 0.00 34.59 1.40
343 2937 6.680148 TGCATATGGAAGGTACATAGCTAA 57.320 37.500 4.56 0.00 34.59 3.09
362 2956 0.110104 GAAGAGGGCTATGGCTGCAT 59.890 55.000 0.50 0.00 38.73 3.96
403 2999 4.997905 AACATTGACATCGTCTTCACTG 57.002 40.909 0.00 0.00 33.15 3.66
421 3017 6.701340 ACAAGAGAGCAAGACATATGTAACA 58.299 36.000 8.71 0.00 0.00 2.41
432 3028 2.630098 ACAGCAGTACAAGAGAGCAAGA 59.370 45.455 0.00 0.00 0.00 3.02
461 3057 4.537015 CTGTTTAGGGAAACGCTGAAAAG 58.463 43.478 0.00 0.00 46.76 2.27
467 3063 1.607148 GTTGCTGTTTAGGGAAACGCT 59.393 47.619 13.99 0.00 46.76 5.07
468 3064 1.335597 GGTTGCTGTTTAGGGAAACGC 60.336 52.381 9.09 9.09 46.76 4.84
499 3095 5.621197 TTGTTGATAACCATGAAACTCCG 57.379 39.130 0.00 0.00 0.00 4.63
504 3100 8.772705 GCTTCATTTTTGTTGATAACCATGAAA 58.227 29.630 0.00 0.00 0.00 2.69
506 3102 6.873076 GGCTTCATTTTTGTTGATAACCATGA 59.127 34.615 0.00 0.00 0.00 3.07
508 3104 7.008021 AGGCTTCATTTTTGTTGATAACCAT 57.992 32.000 0.00 0.00 0.00 3.55
509 3105 6.418057 AGGCTTCATTTTTGTTGATAACCA 57.582 33.333 0.00 0.00 0.00 3.67
513 3109 9.806203 CATGATAAGGCTTCATTTTTGTTGATA 57.194 29.630 1.30 0.00 31.50 2.15
514 3110 8.533657 TCATGATAAGGCTTCATTTTTGTTGAT 58.466 29.630 1.30 0.00 31.50 2.57
521 3120 8.716674 ACCATATCATGATAAGGCTTCATTTT 57.283 30.769 28.72 10.60 36.01 1.82
524 3123 7.395489 GGAAACCATATCATGATAAGGCTTCAT 59.605 37.037 33.12 19.48 38.22 2.57
603 3289 3.119602 TCCCAAGACTTTCACGATACTCG 60.120 47.826 0.00 0.00 46.93 4.18
607 3293 3.055458 TGCATCCCAAGACTTTCACGATA 60.055 43.478 0.00 0.00 0.00 2.92
614 3300 0.400213 TCGGTGCATCCCAAGACTTT 59.600 50.000 0.00 0.00 0.00 2.66
615 3301 0.321653 GTCGGTGCATCCCAAGACTT 60.322 55.000 0.00 0.00 33.30 3.01
669 3355 5.809001 ACTTTGTAATGCTGAAGGATGAGA 58.191 37.500 0.00 0.00 0.00 3.27
709 3395 6.994421 ATTTTGTACTTCCACCCATCTTTT 57.006 33.333 0.00 0.00 0.00 2.27
747 3434 5.063204 TGTTGTCATTGGACTTCCTGTAAG 58.937 41.667 0.00 0.00 44.61 2.34
759 3446 1.228831 TGGCCCCTGTTGTCATTGG 60.229 57.895 0.00 0.00 0.00 3.16
790 3477 1.216064 TCTGGTAGCATCCTTGGCAT 58.784 50.000 0.00 0.00 0.00 4.40
809 3496 1.280421 CTCTAAGCTCCAGCCCAGTTT 59.720 52.381 0.00 0.00 43.38 2.66
831 3518 3.519579 AGAACACTCTCATCGAATGCAG 58.480 45.455 0.00 0.00 0.00 4.41
888 3575 4.164796 TGAGAATGAGATGCACCCTTGTAT 59.835 41.667 0.00 0.00 0.00 2.29
889 3576 3.519107 TGAGAATGAGATGCACCCTTGTA 59.481 43.478 0.00 0.00 0.00 2.41
912 3599 2.400962 TGTGCACTGCGATCCATGC 61.401 57.895 19.41 0.00 38.59 4.06
958 3663 0.878523 TTGTGACGGCCAGACTTTCG 60.879 55.000 2.24 0.00 0.00 3.46
959 3664 0.868406 CTTGTGACGGCCAGACTTTC 59.132 55.000 2.24 0.00 0.00 2.62
969 3674 0.105039 GGATAGCCCTCTTGTGACGG 59.895 60.000 0.00 0.00 0.00 4.79
971 3676 1.834263 ACTGGATAGCCCTCTTGTGAC 59.166 52.381 0.00 0.00 35.38 3.67
1005 3710 2.104967 AGCAGGTACGCCATGTAGTTA 58.895 47.619 0.00 0.00 37.19 2.24
1015 3720 2.004583 TTCACATACAGCAGGTACGC 57.995 50.000 0.00 0.00 34.07 4.42
1016 3721 3.123804 GGATTCACATACAGCAGGTACG 58.876 50.000 0.00 0.00 34.07 3.67
1023 3728 4.701765 ACATCTCAGGATTCACATACAGC 58.298 43.478 0.00 0.00 0.00 4.40
1028 3733 5.533903 GCCATTAACATCTCAGGATTCACAT 59.466 40.000 0.00 0.00 0.00 3.21
1058 3763 1.538950 CTGTGAAAAGCCTCCTTCTGC 59.461 52.381 0.00 0.00 0.00 4.26
1067 3772 4.970662 TCATAAGCATCTGTGAAAAGCC 57.029 40.909 0.00 0.00 0.00 4.35
1068 3773 6.187125 TCTTCATAAGCATCTGTGAAAAGC 57.813 37.500 0.00 0.00 30.96 3.51
1079 3784 5.045286 AGTTCCTCCAGTTCTTCATAAGCAT 60.045 40.000 0.00 0.00 0.00 3.79
1083 3788 6.433847 TTCAGTTCCTCCAGTTCTTCATAA 57.566 37.500 0.00 0.00 0.00 1.90
1086 3791 3.071602 CCTTCAGTTCCTCCAGTTCTTCA 59.928 47.826 0.00 0.00 0.00 3.02
1087 3792 3.558109 CCCTTCAGTTCCTCCAGTTCTTC 60.558 52.174 0.00 0.00 0.00 2.87
1088 3793 2.373502 CCCTTCAGTTCCTCCAGTTCTT 59.626 50.000 0.00 0.00 0.00 2.52
1089 3794 1.981495 CCCTTCAGTTCCTCCAGTTCT 59.019 52.381 0.00 0.00 0.00 3.01
1090 3795 1.611936 GCCCTTCAGTTCCTCCAGTTC 60.612 57.143 0.00 0.00 0.00 3.01
1091 3796 0.402121 GCCCTTCAGTTCCTCCAGTT 59.598 55.000 0.00 0.00 0.00 3.16
1092 3797 0.768221 TGCCCTTCAGTTCCTCCAGT 60.768 55.000 0.00 0.00 0.00 4.00
1093 3798 0.622665 ATGCCCTTCAGTTCCTCCAG 59.377 55.000 0.00 0.00 0.00 3.86
1094 3799 0.620556 GATGCCCTTCAGTTCCTCCA 59.379 55.000 0.00 0.00 0.00 3.86
1095 3800 0.620556 TGATGCCCTTCAGTTCCTCC 59.379 55.000 0.00 0.00 0.00 4.30
1098 3803 2.425143 TGATGATGCCCTTCAGTTCC 57.575 50.000 0.00 0.00 0.00 3.62
1129 3834 1.073923 TCTTTCCTTGGGAGGTTGCTC 59.926 52.381 0.00 0.00 43.97 4.26
1175 3898 2.854032 CACCTCCACCACCCACCT 60.854 66.667 0.00 0.00 0.00 4.00
1181 3904 1.003718 GTACCTGCACCTCCACCAC 60.004 63.158 0.00 0.00 0.00 4.16
1206 3944 1.076438 GGATAATTCCTCCCTGGGGG 58.924 60.000 14.00 9.91 39.14 5.40
1208 3946 0.036875 GCGGATAATTCCTCCCTGGG 59.963 60.000 6.33 6.33 40.17 4.45
1209 3947 0.320771 CGCGGATAATTCCTCCCTGG 60.321 60.000 0.00 0.00 40.17 4.45
1239 3977 6.318900 GGAGATCCGATAACACTTTGGAAATT 59.681 38.462 0.00 0.00 31.42 1.82
1254 3992 2.461300 TGTCTTCAGGGAGATCCGAT 57.539 50.000 0.00 0.00 41.52 4.18
1263 4001 2.304180 AGTCCACATCTTGTCTTCAGGG 59.696 50.000 0.00 0.00 0.00 4.45
1272 4010 4.155462 CCTTCAATCACAGTCCACATCTTG 59.845 45.833 0.00 0.00 0.00 3.02
1283 4021 0.518636 CCACACGCCTTCAATCACAG 59.481 55.000 0.00 0.00 0.00 3.66
1290 4028 3.164977 TCCACCCACACGCCTTCA 61.165 61.111 0.00 0.00 0.00 3.02
1341 4079 2.746277 CCCTTGGCGTGCAGGTAC 60.746 66.667 8.40 2.44 0.00 3.34
1468 4206 2.202932 CCCTCCTCCGTTGCGATG 60.203 66.667 0.00 0.00 0.00 3.84
1469 4207 4.162690 GCCCTCCTCCGTTGCGAT 62.163 66.667 0.00 0.00 0.00 4.58
1471 4209 4.473520 ATGCCCTCCTCCGTTGCG 62.474 66.667 0.00 0.00 0.00 4.85
1472 4210 2.825836 CATGCCCTCCTCCGTTGC 60.826 66.667 0.00 0.00 0.00 4.17
1473 4211 2.124570 CCATGCCCTCCTCCGTTG 60.125 66.667 0.00 0.00 0.00 4.10
1581 4322 0.893727 ATTGACCGGTGGCTTGTTCC 60.894 55.000 14.63 0.00 0.00 3.62
1632 4373 7.776107 TCATAGTGAATCAGACGATTTCTTCT 58.224 34.615 0.00 0.00 42.06 2.85
1676 4420 5.633830 TTGAATTCAGCATCAGAAAGGAC 57.366 39.130 8.41 0.00 0.00 3.85
1677 4421 7.943079 TTATTGAATTCAGCATCAGAAAGGA 57.057 32.000 8.41 0.00 0.00 3.36
1686 4547 6.071784 TGCACACTCTTTATTGAATTCAGCAT 60.072 34.615 8.41 3.08 0.00 3.79
1717 4579 1.172812 AAGGAGGCTCCAAAACACGC 61.173 55.000 33.86 4.90 39.61 5.34
1718 4580 0.875059 GAAGGAGGCTCCAAAACACG 59.125 55.000 33.86 0.00 39.61 4.49
1719 4581 1.202940 AGGAAGGAGGCTCCAAAACAC 60.203 52.381 33.86 17.34 39.61 3.32
1737 4696 4.036971 CACGGTACAGGATAGAGAAGAAGG 59.963 50.000 0.00 0.00 0.00 3.46
1749 4708 7.828717 TCGGTAATATATATTCACGGTACAGGA 59.171 37.037 21.61 10.08 0.00 3.86
1765 4724 7.062749 AGAAGAATGGTGCTTCGGTAATATA 57.937 36.000 0.00 0.00 44.88 0.86
1766 4725 5.930135 AGAAGAATGGTGCTTCGGTAATAT 58.070 37.500 0.00 0.00 44.88 1.28
1768 4727 4.222124 AGAAGAATGGTGCTTCGGTAAT 57.778 40.909 0.00 0.00 44.88 1.89
1770 4729 3.695830 AAGAAGAATGGTGCTTCGGTA 57.304 42.857 0.00 0.00 44.88 4.02
1771 4730 2.568623 AAGAAGAATGGTGCTTCGGT 57.431 45.000 0.00 0.00 44.88 4.69
1772 4731 3.372206 CAGTAAGAAGAATGGTGCTTCGG 59.628 47.826 0.00 0.00 44.88 4.30
1773 4732 4.245660 TCAGTAAGAAGAATGGTGCTTCG 58.754 43.478 0.00 0.00 44.88 3.79
1780 4739 6.520272 AGATCCGAATCAGTAAGAAGAATGG 58.480 40.000 0.00 0.00 34.07 3.16
1822 4781 4.044336 TGAACAATGCACAAAACCTCTG 57.956 40.909 0.00 0.00 0.00 3.35
1825 4784 5.021033 TGAATGAACAATGCACAAAACCT 57.979 34.783 0.00 0.00 0.00 3.50
1826 4785 4.810491 ACTGAATGAACAATGCACAAAACC 59.190 37.500 0.00 0.00 0.00 3.27
1834 4793 2.415893 CGGGGAACTGAATGAACAATGC 60.416 50.000 0.00 0.00 39.98 3.56
1846 4820 2.385803 ACCTACTATGACGGGGAACTG 58.614 52.381 0.00 0.00 44.60 3.16
1854 4828 7.481642 ACTGATGAAACTAACCTACTATGACG 58.518 38.462 0.00 0.00 0.00 4.35
1855 4829 9.303537 GAACTGATGAAACTAACCTACTATGAC 57.696 37.037 0.00 0.00 0.00 3.06
1856 4830 8.475639 GGAACTGATGAAACTAACCTACTATGA 58.524 37.037 0.00 0.00 0.00 2.15
1857 4831 8.478877 AGGAACTGATGAAACTAACCTACTATG 58.521 37.037 0.00 0.00 37.18 2.23
1858 4832 8.611051 AGGAACTGATGAAACTAACCTACTAT 57.389 34.615 0.00 0.00 37.18 2.12
1859 4833 7.123847 GGAGGAACTGATGAAACTAACCTACTA 59.876 40.741 0.00 0.00 41.55 1.82
1860 4834 6.070710 GGAGGAACTGATGAAACTAACCTACT 60.071 42.308 0.00 0.00 41.55 2.57
1861 4835 6.070710 AGGAGGAACTGATGAAACTAACCTAC 60.071 42.308 0.00 0.00 41.55 3.18
1869 4843 7.040409 ACAAACAATAGGAGGAACTGATGAAAC 60.040 37.037 0.00 0.00 41.55 2.78
1874 4848 4.702131 GCACAAACAATAGGAGGAACTGAT 59.298 41.667 0.00 0.00 41.55 2.90
1884 4858 1.818674 GGGTGAGGCACAAACAATAGG 59.181 52.381 0.00 0.00 35.86 2.57
1904 4881 4.481930 TCTTTCACGTAGCCATTTTGTG 57.518 40.909 0.00 0.00 0.00 3.33
1905 4882 4.518970 ACATCTTTCACGTAGCCATTTTGT 59.481 37.500 0.00 0.00 0.00 2.83
1906 4883 4.853196 CACATCTTTCACGTAGCCATTTTG 59.147 41.667 0.00 0.00 0.00 2.44
1907 4884 4.082787 CCACATCTTTCACGTAGCCATTTT 60.083 41.667 0.00 0.00 0.00 1.82
1908 4885 3.440173 CCACATCTTTCACGTAGCCATTT 59.560 43.478 0.00 0.00 0.00 2.32
1909 4886 3.009723 CCACATCTTTCACGTAGCCATT 58.990 45.455 0.00 0.00 0.00 3.16
1910 4887 2.027192 ACCACATCTTTCACGTAGCCAT 60.027 45.455 0.00 0.00 0.00 4.40
1912 4889 2.094762 ACCACATCTTTCACGTAGCC 57.905 50.000 0.00 0.00 0.00 3.93
1928 4905 4.573201 ACGAACGAGAATGAAAGAAAACCA 59.427 37.500 0.14 0.00 0.00 3.67
1936 4913 5.558273 GCTCTTTTGACGAACGAGAATGAAA 60.558 40.000 12.07 0.00 36.10 2.69
1942 4919 2.502213 TGCTCTTTTGACGAACGAGA 57.498 45.000 12.07 0.00 36.10 4.04
1949 4926 0.041312 CGTGGGTTGCTCTTTTGACG 60.041 55.000 0.00 0.00 0.00 4.35
1965 4943 6.140110 CACCAACTGTTAATTAGAAACCGTG 58.860 40.000 0.00 0.00 0.00 4.94
1981 4965 4.977963 CAGACTAATTTGTTGCACCAACTG 59.022 41.667 0.00 0.00 43.85 3.16
1983 5226 5.181690 TCAGACTAATTTGTTGCACCAAC 57.818 39.130 0.00 1.33 43.78 3.77
2012 5255 4.584327 TCTTGTTCTGTCAGACGAATGA 57.416 40.909 0.78 0.00 0.00 2.57
2018 5261 3.397482 AGCACATCTTGTTCTGTCAGAC 58.603 45.455 0.78 0.00 0.00 3.51
2026 5269 7.290857 TCGTTTATTAGAGCACATCTTGTTC 57.709 36.000 0.00 0.00 39.64 3.18
2030 5274 5.978814 ACCTCGTTTATTAGAGCACATCTT 58.021 37.500 0.00 0.00 39.64 2.40
2032 5276 6.418226 CAGTACCTCGTTTATTAGAGCACATC 59.582 42.308 0.00 0.00 33.39 3.06
2049 5293 3.797256 GTCGTTGATGCATACAGTACCTC 59.203 47.826 0.00 0.00 0.00 3.85
2053 5297 6.370166 TGAAATTGTCGTTGATGCATACAGTA 59.630 34.615 0.00 0.00 0.00 2.74
2060 5304 3.551863 GGGTTGAAATTGTCGTTGATGCA 60.552 43.478 0.00 0.00 0.00 3.96
2068 5312 1.662876 CGCACTGGGTTGAAATTGTCG 60.663 52.381 0.00 0.00 0.00 4.35
2069 5313 1.606668 TCGCACTGGGTTGAAATTGTC 59.393 47.619 0.00 0.00 0.00 3.18
2087 5437 3.697982 TGTACGTACAAGGCATGTATCG 58.302 45.455 25.54 17.01 45.87 2.92
2088 5438 4.049186 CCTGTACGTACAAGGCATGTATC 58.951 47.826 27.16 0.00 45.87 2.24
2089 5439 3.181469 CCCTGTACGTACAAGGCATGTAT 60.181 47.826 26.17 0.00 45.87 2.29
2090 5440 2.166870 CCCTGTACGTACAAGGCATGTA 59.833 50.000 26.17 0.00 43.63 2.29
2091 5441 1.066430 CCCTGTACGTACAAGGCATGT 60.066 52.381 26.17 0.00 46.36 3.21
2093 5443 1.272807 ACCCTGTACGTACAAGGCAT 58.727 50.000 33.52 18.67 40.64 4.40
2094 5444 1.921982 TACCCTGTACGTACAAGGCA 58.078 50.000 33.52 23.57 40.64 4.75
2096 5446 5.126061 AGTTACATACCCTGTACGTACAAGG 59.874 44.000 32.47 32.47 42.26 3.61
2097 5447 6.199937 AGTTACATACCCTGTACGTACAAG 57.800 41.667 27.16 21.52 40.06 3.16
2098 5448 6.350110 GGAAGTTACATACCCTGTACGTACAA 60.350 42.308 27.16 14.36 40.06 2.41
2099 5449 5.125417 GGAAGTTACATACCCTGTACGTACA 59.875 44.000 25.88 25.88 40.06 2.90
2100 5450 5.358160 AGGAAGTTACATACCCTGTACGTAC 59.642 44.000 18.90 18.90 40.06 3.67
2101 5451 5.509498 AGGAAGTTACATACCCTGTACGTA 58.491 41.667 0.00 0.00 40.06 3.57
2102 5452 4.347607 AGGAAGTTACATACCCTGTACGT 58.652 43.478 0.00 0.00 40.06 3.57
2103 5453 4.996788 AGGAAGTTACATACCCTGTACG 57.003 45.455 0.00 0.00 40.06 3.67
2104 5454 7.118825 GTCAAAAGGAAGTTACATACCCTGTAC 59.881 40.741 0.00 0.00 40.06 2.90
2105 5455 7.016858 AGTCAAAAGGAAGTTACATACCCTGTA 59.983 37.037 0.00 0.00 39.39 2.74
2106 5456 6.002082 GTCAAAAGGAAGTTACATACCCTGT 58.998 40.000 0.00 0.00 42.13 4.00
2107 5457 6.149474 CAGTCAAAAGGAAGTTACATACCCTG 59.851 42.308 0.00 0.00 0.00 4.45
2108 5458 6.238648 CAGTCAAAAGGAAGTTACATACCCT 58.761 40.000 0.00 0.00 0.00 4.34
2109 5459 5.106277 GCAGTCAAAAGGAAGTTACATACCC 60.106 44.000 0.00 0.00 0.00 3.69
2128 5478 2.926838 GCTCTGTAAGTAGCAAGCAGTC 59.073 50.000 0.00 0.00 37.17 3.51
2133 5483 2.531206 GGACGCTCTGTAAGTAGCAAG 58.469 52.381 0.00 0.00 37.08 4.01
2144 5495 1.450312 GAACCATGGGGACGCTCTG 60.450 63.158 18.09 0.00 38.05 3.35
2150 5501 1.066215 GCAAAATGGAACCATGGGGAC 60.066 52.381 18.09 5.77 36.68 4.46
2154 5505 2.011222 GCATGCAAAATGGAACCATGG 58.989 47.619 14.21 11.19 36.68 3.66
2155 5506 1.661617 CGCATGCAAAATGGAACCATG 59.338 47.619 19.57 0.00 36.68 3.66
2162 5513 0.173029 TAGCCACGCATGCAAAATGG 59.827 50.000 19.57 18.83 0.00 3.16
2167 5527 1.314534 AATGCTAGCCACGCATGCAA 61.315 50.000 19.57 0.00 46.62 4.08
2168 5528 1.750018 AATGCTAGCCACGCATGCA 60.750 52.632 19.57 0.00 46.62 3.96
2169 5529 1.298863 CAATGCTAGCCACGCATGC 60.299 57.895 13.29 7.91 46.62 4.06
2170 5530 0.452987 AACAATGCTAGCCACGCATG 59.547 50.000 13.29 4.76 46.62 4.06
2175 5535 5.500825 CAAAAACAAAACAATGCTAGCCAC 58.499 37.500 13.29 0.00 0.00 5.01
2178 5538 5.982465 TCCAAAAACAAAACAATGCTAGC 57.018 34.783 8.10 8.10 0.00 3.42
2179 5539 9.276397 CTTTTTCCAAAAACAAAACAATGCTAG 57.724 29.630 0.00 0.00 34.46 3.42
2199 5559 6.626199 TGAGTGCGTTTTCTTTTCTTTTTC 57.374 33.333 0.00 0.00 0.00 2.29
2209 5569 2.602217 GCGAAACATGAGTGCGTTTTCT 60.602 45.455 0.00 0.00 35.53 2.52
2213 5573 0.041312 GTGCGAAACATGAGTGCGTT 60.041 50.000 0.00 0.00 0.00 4.84
2214 5574 0.880278 AGTGCGAAACATGAGTGCGT 60.880 50.000 0.00 0.00 0.00 5.24
2215 5575 0.451628 CAGTGCGAAACATGAGTGCG 60.452 55.000 0.00 0.00 0.00 5.34
2216 5576 0.110056 CCAGTGCGAAACATGAGTGC 60.110 55.000 0.00 0.00 0.00 4.40
2217 5577 0.518636 CCCAGTGCGAAACATGAGTG 59.481 55.000 0.00 0.00 0.00 3.51
2218 5578 0.108585 ACCCAGTGCGAAACATGAGT 59.891 50.000 0.00 0.00 0.00 3.41
2219 5579 1.197721 GAACCCAGTGCGAAACATGAG 59.802 52.381 0.00 0.00 0.00 2.90
2226 5586 1.278985 AGATGATGAACCCAGTGCGAA 59.721 47.619 0.00 0.00 0.00 4.70
2228 5588 1.293924 GAGATGATGAACCCAGTGCG 58.706 55.000 0.00 0.00 0.00 5.34
2239 5599 6.461110 AAACATTGGCTAAAGGAGATGATG 57.539 37.500 0.00 0.00 0.00 3.07
2241 5601 5.185635 CCAAAACATTGGCTAAAGGAGATGA 59.814 40.000 0.00 0.00 35.00 2.92
2244 5604 4.479158 ACCAAAACATTGGCTAAAGGAGA 58.521 39.130 7.49 0.00 45.88 3.71
2253 5613 4.685628 CACTTGACATACCAAAACATTGGC 59.314 41.667 7.49 0.00 45.88 4.52
2260 5620 5.048083 GCATCTTCCACTTGACATACCAAAA 60.048 40.000 0.00 0.00 0.00 2.44
2288 5648 2.357009 GCATCAAAGTATGACCAGGCAG 59.643 50.000 0.00 0.00 41.93 4.85
2300 5660 2.094659 CCGAGCGTCGCATCAAAGT 61.095 57.895 21.09 0.00 38.82 2.66
2330 5690 2.525422 GCAGCTGCTTGAAAAAGGC 58.475 52.632 31.33 0.00 38.21 4.35
2375 5735 3.375782 AACAAGCAATTGCAGGACTTC 57.624 42.857 30.89 0.10 45.16 3.01
2386 5754 7.910162 CGAGTAATAGCAATACAAACAAGCAAT 59.090 33.333 0.00 0.00 0.00 3.56
2402 5770 5.232610 ACACAGTCACTACGAGTAATAGC 57.767 43.478 0.00 0.00 0.00 2.97
2403 5771 7.376336 GCAATACACAGTCACTACGAGTAATAG 59.624 40.741 0.00 0.00 0.00 1.73
2404 5772 7.148205 TGCAATACACAGTCACTACGAGTAATA 60.148 37.037 0.00 0.00 0.00 0.98
2405 5773 6.034591 GCAATACACAGTCACTACGAGTAAT 58.965 40.000 0.00 0.00 0.00 1.89
2406 5774 5.048573 TGCAATACACAGTCACTACGAGTAA 60.049 40.000 0.00 0.00 0.00 2.24
2407 5775 4.456566 TGCAATACACAGTCACTACGAGTA 59.543 41.667 0.00 0.00 0.00 2.59
2545 6213 1.001517 TTTGAAGCATAGCCGCCCA 60.002 52.632 0.00 0.00 0.00 5.36
2568 6236 2.004733 TCAGCATGATGACAAAGAGCG 58.995 47.619 10.16 0.00 42.56 5.03
2606 6274 1.224075 GATCCGGAGCATGACATGTG 58.776 55.000 16.44 5.01 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.