Multiple sequence alignment - TraesCS6B01G463500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G463500 chr6B 100.000 5525 0 0 1 5525 715781573 715776049 0.000000e+00 10203.0
1 TraesCS6B01G463500 chr6B 96.356 1619 54 4 2793 4410 715838307 715836693 0.000000e+00 2658.0
2 TraesCS6B01G463500 chr6B 91.903 1482 88 19 863 2338 715846252 715844797 0.000000e+00 2043.0
3 TraesCS6B01G463500 chr6B 84.356 1515 221 12 2900 4408 715813827 715812323 0.000000e+00 1471.0
4 TraesCS6B01G463500 chr6B 84.452 1505 211 18 2876 4369 716107616 716106124 0.000000e+00 1461.0
5 TraesCS6B01G463500 chr6B 84.086 1483 206 15 2950 4410 715860767 715859293 0.000000e+00 1404.0
6 TraesCS6B01G463500 chr6B 80.778 848 152 9 1006 1847 715971059 715970217 0.000000e+00 652.0
7 TraesCS6B01G463500 chr6B 77.405 1164 219 37 1001 2130 716109933 716108780 0.000000e+00 652.0
8 TraesCS6B01G463500 chr6B 80.867 784 140 9 1006 1784 715980263 715979485 4.730000e-170 608.0
9 TraesCS6B01G463500 chr6B 99.013 304 3 0 5222 5525 715836700 715836397 3.760000e-151 545.0
10 TraesCS6B01G463500 chr6B 86.621 441 32 7 2318 2744 715844761 715844334 3.900000e-126 462.0
11 TraesCS6B01G463500 chr6B 89.744 351 25 4 236 576 531096761 531097110 6.570000e-119 438.0
12 TraesCS6B01G463500 chr6B 81.728 301 51 4 5222 5520 715859300 715859002 1.190000e-61 248.0
13 TraesCS6B01G463500 chr6B 77.509 289 53 5 5240 5522 715768627 715768345 4.430000e-36 163.0
14 TraesCS6B01G463500 chr6B 86.000 150 12 5 400 540 715846512 715846363 9.590000e-33 152.0
15 TraesCS6B01G463500 chr6B 77.385 283 47 8 5240 5515 715941789 715941517 9.590000e-33 152.0
16 TraesCS6B01G463500 chr6B 85.156 128 9 1 91 218 715846685 715846568 7.520000e-24 122.0
17 TraesCS6B01G463500 chr6B 94.203 69 4 0 167 235 531096665 531096733 7.570000e-19 106.0
18 TraesCS6B01G463500 chr6D 85.761 1538 208 9 2876 4407 469917565 469919097 0.000000e+00 1616.0
19 TraesCS6B01G463500 chr6D 77.483 1168 205 35 1006 2132 469813087 469811937 0.000000e+00 647.0
20 TraesCS6B01G463500 chrUn 84.909 1544 223 10 2868 4406 62148811 62150349 0.000000e+00 1552.0
21 TraesCS6B01G463500 chrUn 84.434 1529 219 11 2887 4408 325010023 325008507 0.000000e+00 1487.0
22 TraesCS6B01G463500 chrUn 81.984 1704 247 30 2729 4408 75064707 75063040 0.000000e+00 1391.0
23 TraesCS6B01G463500 chrUn 84.585 1278 188 9 3121 4395 344888843 344890114 0.000000e+00 1260.0
24 TraesCS6B01G463500 chrUn 83.516 728 109 7 3688 4408 348461326 348462049 0.000000e+00 669.0
25 TraesCS6B01G463500 chrUn 83.516 728 109 7 3688 4408 439393613 439394336 0.000000e+00 669.0
26 TraesCS6B01G463500 chrUn 79.533 899 169 10 1006 1894 75076684 75075791 1.310000e-175 627.0
27 TraesCS6B01G463500 chrUn 79.626 908 158 22 1001 1894 291937668 291936774 1.310000e-175 627.0
28 TraesCS6B01G463500 chrUn 79.626 908 158 22 1001 1894 328964785 328963891 1.310000e-175 627.0
29 TraesCS6B01G463500 chrUn 81.356 295 53 2 5229 5522 62150353 62150646 7.150000e-59 239.0
30 TraesCS6B01G463500 chrUn 78.723 235 40 10 2640 2867 397710103 397709872 1.240000e-31 148.0
31 TraesCS6B01G463500 chrUn 78.723 235 40 10 2640 2867 415734976 415734745 1.240000e-31 148.0
32 TraesCS6B01G463500 chrUn 77.113 284 43 10 5240 5512 309831997 309832269 1.600000e-30 145.0
33 TraesCS6B01G463500 chrUn 76.842 285 45 12 247 514 309435343 309435063 2.080000e-29 141.0
34 TraesCS6B01G463500 chrUn 76.842 285 45 12 247 514 339563384 339563104 2.080000e-29 141.0
35 TraesCS6B01G463500 chrUn 78.571 126 23 4 5391 5514 75363984 75363861 4.590000e-11 80.5
36 TraesCS6B01G463500 chrUn 86.207 58 8 0 5446 5503 404087146 404087203 4.620000e-06 63.9
37 TraesCS6B01G463500 chrUn 86.207 58 8 0 5446 5503 450226947 450226890 4.620000e-06 63.9
38 TraesCS6B01G463500 chr7B 97.249 836 13 7 4406 5233 586101206 586100373 0.000000e+00 1408.0
39 TraesCS6B01G463500 chr7D 81.128 1330 243 5 3083 4408 53342820 53341495 0.000000e+00 1059.0
40 TraesCS6B01G463500 chr4A 80.660 1334 243 11 3083 4408 666982377 666983703 0.000000e+00 1020.0
41 TraesCS6B01G463500 chr4A 80.456 834 93 43 4412 5223 688611974 688612759 1.730000e-159 573.0
42 TraesCS6B01G463500 chr6A 77.367 1162 215 34 1001 2132 614795166 614794023 0.000000e+00 645.0
43 TraesCS6B01G463500 chr5B 79.758 825 100 52 4409 5222 549767711 549768479 2.270000e-148 536.0
44 TraesCS6B01G463500 chr5B 95.522 67 2 1 247 312 610747601 610747535 7.570000e-19 106.0
45 TraesCS6B01G463500 chr1B 89.744 351 25 4 236 576 519423661 519423312 6.570000e-119 438.0
46 TraesCS6B01G463500 chr1B 81.951 205 31 4 707 906 519423337 519423134 9.520000e-38 169.0
47 TraesCS6B01G463500 chr4D 87.037 216 20 7 4830 5040 505954808 505955020 2.570000e-58 237.0
48 TraesCS6B01G463500 chr4D 85.047 214 26 5 4830 5040 460806277 460806487 4.340000e-51 213.0
49 TraesCS6B01G463500 chr5A 92.453 53 4 0 656 708 33894573 33894625 5.930000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G463500 chr6B 715776049 715781573 5524 True 10203.00 10203 100.0000 1 5525 1 chr6B.!!$R2 5524
1 TraesCS6B01G463500 chr6B 715836397 715838307 1910 True 1601.50 2658 97.6845 2793 5525 2 chr6B.!!$R7 2732
2 TraesCS6B01G463500 chr6B 715812323 715813827 1504 True 1471.00 1471 84.3560 2900 4408 1 chr6B.!!$R3 1508
3 TraesCS6B01G463500 chr6B 716106124 716109933 3809 True 1056.50 1461 80.9285 1001 4369 2 chr6B.!!$R10 3368
4 TraesCS6B01G463500 chr6B 715859002 715860767 1765 True 826.00 1404 82.9070 2950 5520 2 chr6B.!!$R9 2570
5 TraesCS6B01G463500 chr6B 715844334 715846685 2351 True 694.75 2043 87.4200 91 2744 4 chr6B.!!$R8 2653
6 TraesCS6B01G463500 chr6B 715970217 715971059 842 True 652.00 652 80.7780 1006 1847 1 chr6B.!!$R5 841
7 TraesCS6B01G463500 chr6B 715979485 715980263 778 True 608.00 608 80.8670 1006 1784 1 chr6B.!!$R6 778
8 TraesCS6B01G463500 chr6D 469917565 469919097 1532 False 1616.00 1616 85.7610 2876 4407 1 chr6D.!!$F1 1531
9 TraesCS6B01G463500 chr6D 469811937 469813087 1150 True 647.00 647 77.4830 1006 2132 1 chr6D.!!$R1 1126
10 TraesCS6B01G463500 chrUn 325008507 325010023 1516 True 1487.00 1487 84.4340 2887 4408 1 chrUn.!!$R6 1521
11 TraesCS6B01G463500 chrUn 75063040 75064707 1667 True 1391.00 1391 81.9840 2729 4408 1 chrUn.!!$R1 1679
12 TraesCS6B01G463500 chrUn 344888843 344890114 1271 False 1260.00 1260 84.5850 3121 4395 1 chrUn.!!$F2 1274
13 TraesCS6B01G463500 chrUn 62148811 62150646 1835 False 895.50 1552 83.1325 2868 5522 2 chrUn.!!$F6 2654
14 TraesCS6B01G463500 chrUn 348461326 348462049 723 False 669.00 669 83.5160 3688 4408 1 chrUn.!!$F3 720
15 TraesCS6B01G463500 chrUn 439393613 439394336 723 False 669.00 669 83.5160 3688 4408 1 chrUn.!!$F5 720
16 TraesCS6B01G463500 chrUn 75075791 75076684 893 True 627.00 627 79.5330 1006 1894 1 chrUn.!!$R2 888
17 TraesCS6B01G463500 chrUn 291936774 291937668 894 True 627.00 627 79.6260 1001 1894 1 chrUn.!!$R4 893
18 TraesCS6B01G463500 chrUn 328963891 328964785 894 True 627.00 627 79.6260 1001 1894 1 chrUn.!!$R7 893
19 TraesCS6B01G463500 chr7B 586100373 586101206 833 True 1408.00 1408 97.2490 4406 5233 1 chr7B.!!$R1 827
20 TraesCS6B01G463500 chr7D 53341495 53342820 1325 True 1059.00 1059 81.1280 3083 4408 1 chr7D.!!$R1 1325
21 TraesCS6B01G463500 chr4A 666982377 666983703 1326 False 1020.00 1020 80.6600 3083 4408 1 chr4A.!!$F1 1325
22 TraesCS6B01G463500 chr4A 688611974 688612759 785 False 573.00 573 80.4560 4412 5223 1 chr4A.!!$F2 811
23 TraesCS6B01G463500 chr6A 614794023 614795166 1143 True 645.00 645 77.3670 1001 2132 1 chr6A.!!$R1 1131
24 TraesCS6B01G463500 chr5B 549767711 549768479 768 False 536.00 536 79.7580 4409 5222 1 chr5B.!!$F1 813
25 TraesCS6B01G463500 chr1B 519423134 519423661 527 True 303.50 438 85.8475 236 906 2 chr1B.!!$R1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 919 0.035152 TCAGTGCATTAGTGGCTGGG 60.035 55.0 0.00 0.0 0.0 4.45 F
2274 2478 0.249120 TAGCATCCACGTCACCCTTG 59.751 55.0 0.00 0.0 0.0 3.61 F
2619 2885 0.106268 AGTCACAATTGGCCCACACA 60.106 50.0 10.83 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2599 2865 0.314935 GTGTGGGCCAATTGTGACTG 59.685 55.000 8.40 0.00 0.00 3.51 R
3488 4156 3.165058 TCTTCATCATTCCTTCGACGG 57.835 47.619 0.45 0.45 0.00 4.79 R
4547 5304 3.127030 GGTGAGCAGGTTACTGTTTATGC 59.873 47.826 0.00 0.00 46.62 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.182537 GCATTTTGGCTGCCGAGG 59.817 61.111 14.98 7.04 33.44 4.63
21 22 2.639327 GCATTTTGGCTGCCGAGGT 61.639 57.895 14.98 1.64 33.44 3.85
22 23 1.508088 CATTTTGGCTGCCGAGGTC 59.492 57.895 14.98 0.00 0.00 3.85
23 24 1.074775 ATTTTGGCTGCCGAGGTCA 59.925 52.632 14.98 0.00 0.00 4.02
24 25 0.539438 ATTTTGGCTGCCGAGGTCAA 60.539 50.000 14.98 3.61 0.00 3.18
25 26 1.452145 TTTTGGCTGCCGAGGTCAAC 61.452 55.000 14.98 0.00 0.00 3.18
26 27 2.337879 TTTGGCTGCCGAGGTCAACT 62.338 55.000 14.98 0.00 0.00 3.16
27 28 2.743928 GGCTGCCGAGGTCAACTG 60.744 66.667 1.35 0.00 0.00 3.16
28 29 3.426568 GCTGCCGAGGTCAACTGC 61.427 66.667 0.00 0.00 0.00 4.40
29 30 2.345244 CTGCCGAGGTCAACTGCT 59.655 61.111 0.00 0.00 0.00 4.24
30 31 1.302033 CTGCCGAGGTCAACTGCTT 60.302 57.895 0.00 0.00 0.00 3.91
31 32 1.294659 CTGCCGAGGTCAACTGCTTC 61.295 60.000 0.00 0.00 0.00 3.86
32 33 1.004440 GCCGAGGTCAACTGCTTCT 60.004 57.895 0.00 0.00 0.00 2.85
33 34 1.294659 GCCGAGGTCAACTGCTTCTG 61.295 60.000 0.00 0.00 0.00 3.02
34 35 0.671781 CCGAGGTCAACTGCTTCTGG 60.672 60.000 0.00 0.00 0.00 3.86
35 36 0.671781 CGAGGTCAACTGCTTCTGGG 60.672 60.000 0.00 0.00 0.00 4.45
36 37 0.398318 GAGGTCAACTGCTTCTGGGT 59.602 55.000 0.00 0.00 0.00 4.51
37 38 0.109342 AGGTCAACTGCTTCTGGGTG 59.891 55.000 0.00 0.00 0.00 4.61
38 39 0.108585 GGTCAACTGCTTCTGGGTGA 59.891 55.000 0.00 0.00 0.00 4.02
39 40 1.476833 GGTCAACTGCTTCTGGGTGAA 60.477 52.381 0.00 0.00 0.00 3.18
40 41 2.508526 GTCAACTGCTTCTGGGTGAAT 58.491 47.619 0.00 0.00 33.71 2.57
41 42 3.559171 GGTCAACTGCTTCTGGGTGAATA 60.559 47.826 0.00 0.00 33.71 1.75
42 43 3.686726 GTCAACTGCTTCTGGGTGAATAG 59.313 47.826 0.00 0.00 33.71 1.73
43 44 3.327757 TCAACTGCTTCTGGGTGAATAGT 59.672 43.478 0.00 0.00 35.15 2.12
44 45 4.530553 TCAACTGCTTCTGGGTGAATAGTA 59.469 41.667 0.00 0.00 33.66 1.82
45 46 5.012664 TCAACTGCTTCTGGGTGAATAGTAA 59.987 40.000 0.00 0.00 33.66 2.24
46 47 5.499004 ACTGCTTCTGGGTGAATAGTAAA 57.501 39.130 0.00 0.00 33.29 2.01
47 48 6.067217 ACTGCTTCTGGGTGAATAGTAAAT 57.933 37.500 0.00 0.00 33.29 1.40
48 49 7.195374 ACTGCTTCTGGGTGAATAGTAAATA 57.805 36.000 0.00 0.00 33.29 1.40
49 50 7.630082 ACTGCTTCTGGGTGAATAGTAAATAA 58.370 34.615 0.00 0.00 33.29 1.40
50 51 8.107095 ACTGCTTCTGGGTGAATAGTAAATAAA 58.893 33.333 0.00 0.00 33.29 1.40
51 52 8.871629 TGCTTCTGGGTGAATAGTAAATAAAA 57.128 30.769 0.00 0.00 33.71 1.52
52 53 9.303116 TGCTTCTGGGTGAATAGTAAATAAAAA 57.697 29.630 0.00 0.00 33.71 1.94
107 108 1.682684 CTCCTAGGCCACGTGGAGT 60.683 63.158 38.30 24.71 40.69 3.85
108 109 1.229082 TCCTAGGCCACGTGGAGTT 60.229 57.895 38.30 22.71 37.39 3.01
111 112 3.248446 TAGGCCACGTGGAGTTGGC 62.248 63.158 38.30 21.13 42.43 4.52
131 132 1.905215 CCCCACAGAACAGAGAGACAT 59.095 52.381 0.00 0.00 0.00 3.06
134 135 4.442612 CCCCACAGAACAGAGAGACATATG 60.443 50.000 0.00 0.00 0.00 1.78
135 136 4.118410 CCACAGAACAGAGAGACATATGC 58.882 47.826 1.58 0.00 0.00 3.14
164 165 3.760035 AAGCGACGACGGCCAGAT 61.760 61.111 9.67 0.00 40.15 2.90
165 166 3.701604 AAGCGACGACGGCCAGATC 62.702 63.158 9.67 0.00 40.15 2.75
167 168 3.822192 CGACGACGGCCAGATCCA 61.822 66.667 2.24 0.00 35.72 3.41
168 169 2.202756 GACGACGGCCAGATCCAC 60.203 66.667 2.24 0.00 0.00 4.02
169 170 3.718210 GACGACGGCCAGATCCACC 62.718 68.421 2.24 0.00 0.00 4.61
170 171 4.530857 CGACGGCCAGATCCACCC 62.531 72.222 2.24 0.00 0.00 4.61
171 172 4.176752 GACGGCCAGATCCACCCC 62.177 72.222 2.24 0.00 0.00 4.95
220 221 4.796231 TCCGAGCTTCGCCGCTTC 62.796 66.667 0.00 0.00 41.08 3.86
222 223 3.843240 CGAGCTTCGCCGCTTCAC 61.843 66.667 0.00 0.00 41.08 3.18
223 224 2.433318 GAGCTTCGCCGCTTCACT 60.433 61.111 0.00 0.00 41.08 3.41
226 227 2.448705 GCTTCGCCGCTTCACTCTC 61.449 63.158 0.00 0.00 0.00 3.20
227 228 1.807573 CTTCGCCGCTTCACTCTCC 60.808 63.158 0.00 0.00 0.00 3.71
232 240 1.137825 CCGCTTCACTCTCCTCGTC 59.862 63.158 0.00 0.00 0.00 4.20
234 242 1.137825 GCTTCACTCTCCTCGTCGG 59.862 63.158 0.00 0.00 0.00 4.79
255 263 3.866582 CCATCCTCCACGGCCTCC 61.867 72.222 0.00 0.00 0.00 4.30
315 323 1.494960 GTGCTTCCATCTCCTCCTCT 58.505 55.000 0.00 0.00 0.00 3.69
316 324 1.412343 GTGCTTCCATCTCCTCCTCTC 59.588 57.143 0.00 0.00 0.00 3.20
320 328 1.613241 TCCATCTCCTCCTCTCCTGA 58.387 55.000 0.00 0.00 0.00 3.86
367 375 4.592192 CGCCTGCACGGGATCGAT 62.592 66.667 0.00 0.00 40.11 3.59
368 376 2.663188 GCCTGCACGGGATCGATC 60.663 66.667 17.36 17.36 40.11 3.69
369 377 2.814604 CCTGCACGGGATCGATCA 59.185 61.111 25.93 4.94 40.11 2.92
370 378 1.300465 CCTGCACGGGATCGATCAG 60.300 63.158 25.93 20.32 40.11 2.90
371 379 1.439228 CTGCACGGGATCGATCAGT 59.561 57.895 25.93 20.94 40.11 3.41
372 380 0.668535 CTGCACGGGATCGATCAGTA 59.331 55.000 25.93 11.33 40.11 2.74
373 381 0.668535 TGCACGGGATCGATCAGTAG 59.331 55.000 25.93 17.98 40.11 2.57
374 382 0.664767 GCACGGGATCGATCAGTAGC 60.665 60.000 25.93 22.18 40.11 3.58
375 383 0.955178 CACGGGATCGATCAGTAGCT 59.045 55.000 25.93 0.00 40.11 3.32
376 384 1.068885 CACGGGATCGATCAGTAGCTC 60.069 57.143 25.93 7.33 40.11 4.09
377 385 0.167033 CGGGATCGATCAGTAGCTCG 59.833 60.000 25.93 7.56 39.00 5.03
378 386 1.240256 GGGATCGATCAGTAGCTCGT 58.760 55.000 25.93 0.00 35.10 4.18
379 387 1.198178 GGGATCGATCAGTAGCTCGTC 59.802 57.143 25.93 5.21 35.10 4.20
380 388 1.198178 GGATCGATCAGTAGCTCGTCC 59.802 57.143 25.93 2.55 35.10 4.79
381 389 1.198178 GATCGATCAGTAGCTCGTCCC 59.802 57.143 20.52 0.00 35.10 4.46
382 390 1.158484 TCGATCAGTAGCTCGTCCCG 61.158 60.000 0.00 0.00 35.10 5.14
383 391 1.008309 GATCAGTAGCTCGTCCCGC 60.008 63.158 0.00 0.00 0.00 6.13
384 392 1.725557 GATCAGTAGCTCGTCCCGCA 61.726 60.000 0.00 0.00 0.00 5.69
385 393 2.005960 ATCAGTAGCTCGTCCCGCAC 62.006 60.000 0.00 0.00 0.00 5.34
386 394 2.675423 AGTAGCTCGTCCCGCACA 60.675 61.111 0.00 0.00 0.00 4.57
387 395 2.202623 GTAGCTCGTCCCGCACAG 60.203 66.667 0.00 0.00 0.00 3.66
388 396 2.360726 TAGCTCGTCCCGCACAGA 60.361 61.111 0.00 0.00 0.00 3.41
389 397 2.407428 TAGCTCGTCCCGCACAGAG 61.407 63.158 0.00 0.00 0.00 3.35
390 398 2.814913 TAGCTCGTCCCGCACAGAGA 62.815 60.000 0.00 0.00 31.22 3.10
391 399 3.069980 GCTCGTCCCGCACAGAGAT 62.070 63.158 0.00 0.00 31.22 2.75
392 400 1.513158 CTCGTCCCGCACAGAGATT 59.487 57.895 0.00 0.00 31.22 2.40
393 401 0.803768 CTCGTCCCGCACAGAGATTG 60.804 60.000 0.00 0.00 31.22 2.67
394 402 1.079819 CGTCCCGCACAGAGATTGT 60.080 57.895 0.00 0.00 41.94 2.71
395 403 1.078759 CGTCCCGCACAGAGATTGTC 61.079 60.000 0.00 0.00 38.16 3.18
396 404 0.741221 GTCCCGCACAGAGATTGTCC 60.741 60.000 0.00 0.00 38.16 4.02
397 405 1.811266 CCCGCACAGAGATTGTCCG 60.811 63.158 0.00 0.00 40.67 4.79
398 406 1.079819 CCGCACAGAGATTGTCCGT 60.080 57.895 0.00 0.00 39.34 4.69
404 412 3.588955 CACAGAGATTGTCCGTGAATCA 58.411 45.455 0.00 0.00 38.16 2.57
410 418 4.899502 AGATTGTCCGTGAATCAGTTCTT 58.100 39.130 0.00 0.00 35.33 2.52
414 422 5.418310 TGTCCGTGAATCAGTTCTTTTTC 57.582 39.130 0.00 0.00 35.33 2.29
435 443 1.154093 GGTTCAGATCGACGACGCA 60.154 57.895 0.00 0.00 39.58 5.24
445 453 2.915659 ACGACGCAGGGAGTGGAA 60.916 61.111 0.00 0.00 0.00 3.53
447 455 0.968901 ACGACGCAGGGAGTGGAATA 60.969 55.000 0.00 0.00 0.00 1.75
483 499 3.699484 CAGCGCGCTCGATCCATG 61.699 66.667 34.28 15.10 38.10 3.66
501 517 2.278077 CTGAGAGCAGAGCGAGCG 60.278 66.667 0.00 0.00 45.17 5.03
502 518 3.050166 CTGAGAGCAGAGCGAGCGT 62.050 63.158 0.00 0.00 45.17 5.07
515 531 1.806568 GAGCGTACTCTGAGCTGCT 59.193 57.895 15.82 15.82 41.84 4.24
537 553 3.082548 ACTAGCGTACTCTGAGCTTTCA 58.917 45.455 4.19 0.00 41.88 2.69
538 554 2.645730 AGCGTACTCTGAGCTTTCAG 57.354 50.000 4.19 0.00 38.13 3.02
558 574 2.124277 GGTACCCTTGGCTAACTTGG 57.876 55.000 0.00 0.00 0.00 3.61
559 575 1.631898 GGTACCCTTGGCTAACTTGGA 59.368 52.381 0.00 0.00 0.00 3.53
560 576 2.241430 GGTACCCTTGGCTAACTTGGAT 59.759 50.000 0.00 0.00 0.00 3.41
561 577 3.308904 GGTACCCTTGGCTAACTTGGATT 60.309 47.826 0.00 0.00 0.00 3.01
562 578 4.080186 GGTACCCTTGGCTAACTTGGATTA 60.080 45.833 0.00 0.00 0.00 1.75
563 579 4.881157 ACCCTTGGCTAACTTGGATTAT 57.119 40.909 0.00 0.00 0.00 1.28
564 580 5.206905 ACCCTTGGCTAACTTGGATTATT 57.793 39.130 0.00 0.00 0.00 1.40
565 581 5.589831 ACCCTTGGCTAACTTGGATTATTT 58.410 37.500 0.00 0.00 0.00 1.40
566 582 5.656859 ACCCTTGGCTAACTTGGATTATTTC 59.343 40.000 0.00 0.00 0.00 2.17
567 583 5.893824 CCCTTGGCTAACTTGGATTATTTCT 59.106 40.000 0.00 0.00 0.00 2.52
568 584 6.039829 CCCTTGGCTAACTTGGATTATTTCTC 59.960 42.308 0.00 0.00 0.00 2.87
569 585 6.830838 CCTTGGCTAACTTGGATTATTTCTCT 59.169 38.462 0.00 0.00 0.00 3.10
570 586 7.340487 CCTTGGCTAACTTGGATTATTTCTCTT 59.660 37.037 0.00 0.00 0.00 2.85
571 587 8.650143 TTGGCTAACTTGGATTATTTCTCTTT 57.350 30.769 0.00 0.00 0.00 2.52
572 588 8.281212 TGGCTAACTTGGATTATTTCTCTTTC 57.719 34.615 0.00 0.00 0.00 2.62
573 589 7.339466 TGGCTAACTTGGATTATTTCTCTTTCC 59.661 37.037 0.00 0.00 0.00 3.13
574 590 7.339466 GGCTAACTTGGATTATTTCTCTTTCCA 59.661 37.037 0.00 0.00 34.74 3.53
575 591 8.401709 GCTAACTTGGATTATTTCTCTTTCCAG 58.598 37.037 0.00 0.00 37.74 3.86
576 592 9.454859 CTAACTTGGATTATTTCTCTTTCCAGT 57.545 33.333 0.00 0.00 37.74 4.00
577 593 8.712228 AACTTGGATTATTTCTCTTTCCAGTT 57.288 30.769 0.00 0.00 37.74 3.16
578 594 8.712228 ACTTGGATTATTTCTCTTTCCAGTTT 57.288 30.769 0.00 0.00 37.74 2.66
579 595 9.807921 ACTTGGATTATTTCTCTTTCCAGTTTA 57.192 29.630 0.00 0.00 37.74 2.01
583 599 9.937175 GGATTATTTCTCTTTCCAGTTTATTCG 57.063 33.333 0.00 0.00 0.00 3.34
586 602 7.617041 ATTTCTCTTTCCAGTTTATTCGAGG 57.383 36.000 0.00 0.00 0.00 4.63
587 603 5.086104 TCTCTTTCCAGTTTATTCGAGGG 57.914 43.478 0.00 0.00 0.00 4.30
588 604 3.606687 TCTTTCCAGTTTATTCGAGGGC 58.393 45.455 0.00 0.00 0.00 5.19
589 605 2.413310 TTCCAGTTTATTCGAGGGCC 57.587 50.000 0.00 0.00 0.00 5.80
590 606 0.544697 TCCAGTTTATTCGAGGGCCC 59.455 55.000 16.46 16.46 0.00 5.80
591 607 0.546598 CCAGTTTATTCGAGGGCCCT 59.453 55.000 29.18 29.18 0.00 5.19
592 608 1.475213 CCAGTTTATTCGAGGGCCCTC 60.475 57.143 38.24 38.24 39.55 4.30
593 609 0.837940 AGTTTATTCGAGGGCCCTCC 59.162 55.000 40.37 26.34 39.77 4.30
594 610 0.544697 GTTTATTCGAGGGCCCTCCA 59.455 55.000 40.37 30.01 39.77 3.86
595 611 1.064979 GTTTATTCGAGGGCCCTCCAA 60.065 52.381 40.37 35.75 39.77 3.53
596 612 0.837272 TTATTCGAGGGCCCTCCAAG 59.163 55.000 40.37 28.52 39.77 3.61
597 613 1.696097 TATTCGAGGGCCCTCCAAGC 61.696 60.000 40.37 20.88 39.77 4.01
599 615 4.479993 CGAGGGCCCTCCAAGCAG 62.480 72.222 40.37 24.44 39.77 4.24
600 616 3.011517 GAGGGCCCTCCAAGCAGA 61.012 66.667 38.25 0.00 37.11 4.26
601 617 2.532715 AGGGCCCTCCAAGCAGAA 60.533 61.111 22.28 0.00 38.24 3.02
602 618 1.931007 GAGGGCCCTCCAAGCAGAAT 61.931 60.000 38.25 5.90 37.11 2.40
603 619 1.000866 GGGCCCTCCAAGCAGAATT 59.999 57.895 17.04 0.00 35.00 2.17
604 620 0.258774 GGGCCCTCCAAGCAGAATTA 59.741 55.000 17.04 0.00 35.00 1.40
605 621 1.341976 GGGCCCTCCAAGCAGAATTAA 60.342 52.381 17.04 0.00 35.00 1.40
606 622 1.751351 GGCCCTCCAAGCAGAATTAAC 59.249 52.381 0.00 0.00 0.00 2.01
607 623 2.446435 GCCCTCCAAGCAGAATTAACA 58.554 47.619 0.00 0.00 0.00 2.41
608 624 3.026694 GCCCTCCAAGCAGAATTAACAT 58.973 45.455 0.00 0.00 0.00 2.71
609 625 4.207165 GCCCTCCAAGCAGAATTAACATA 58.793 43.478 0.00 0.00 0.00 2.29
610 626 4.276926 GCCCTCCAAGCAGAATTAACATAG 59.723 45.833 0.00 0.00 0.00 2.23
611 627 4.276926 CCCTCCAAGCAGAATTAACATAGC 59.723 45.833 0.00 0.00 0.00 2.97
612 628 4.883585 CCTCCAAGCAGAATTAACATAGCA 59.116 41.667 0.00 0.00 0.00 3.49
613 629 5.357878 CCTCCAAGCAGAATTAACATAGCAA 59.642 40.000 0.00 0.00 0.00 3.91
614 630 6.441093 TCCAAGCAGAATTAACATAGCAAG 57.559 37.500 0.00 0.00 0.00 4.01
615 631 5.039333 CCAAGCAGAATTAACATAGCAAGC 58.961 41.667 0.00 0.00 0.00 4.01
616 632 5.393352 CCAAGCAGAATTAACATAGCAAGCA 60.393 40.000 0.00 0.00 0.00 3.91
617 633 5.240713 AGCAGAATTAACATAGCAAGCAC 57.759 39.130 0.00 0.00 0.00 4.40
618 634 4.031028 GCAGAATTAACATAGCAAGCACG 58.969 43.478 0.00 0.00 0.00 5.34
619 635 4.591202 CAGAATTAACATAGCAAGCACGG 58.409 43.478 0.00 0.00 0.00 4.94
620 636 4.094887 CAGAATTAACATAGCAAGCACGGT 59.905 41.667 0.00 0.00 0.00 4.83
621 637 4.094887 AGAATTAACATAGCAAGCACGGTG 59.905 41.667 3.15 3.15 0.00 4.94
622 638 2.753055 TAACATAGCAAGCACGGTGA 57.247 45.000 13.29 0.00 0.00 4.02
623 639 1.890876 AACATAGCAAGCACGGTGAA 58.109 45.000 13.29 0.00 0.00 3.18
624 640 1.442769 ACATAGCAAGCACGGTGAAG 58.557 50.000 13.29 1.39 0.00 3.02
625 641 1.001974 ACATAGCAAGCACGGTGAAGA 59.998 47.619 13.29 0.00 0.00 2.87
626 642 2.076100 CATAGCAAGCACGGTGAAGAA 58.924 47.619 13.29 0.00 0.00 2.52
627 643 2.248280 TAGCAAGCACGGTGAAGAAA 57.752 45.000 13.29 0.00 0.00 2.52
628 644 1.388547 AGCAAGCACGGTGAAGAAAA 58.611 45.000 13.29 0.00 0.00 2.29
629 645 1.748493 AGCAAGCACGGTGAAGAAAAA 59.252 42.857 13.29 0.00 0.00 1.94
630 646 1.852280 GCAAGCACGGTGAAGAAAAAC 59.148 47.619 13.29 0.00 0.00 2.43
631 647 2.479560 GCAAGCACGGTGAAGAAAAACT 60.480 45.455 13.29 0.00 0.00 2.66
632 648 3.363178 CAAGCACGGTGAAGAAAAACTC 58.637 45.455 13.29 0.00 0.00 3.01
633 649 1.947456 AGCACGGTGAAGAAAAACTCC 59.053 47.619 13.29 0.00 0.00 3.85
634 650 1.947456 GCACGGTGAAGAAAAACTCCT 59.053 47.619 13.29 0.00 0.00 3.69
635 651 2.287009 GCACGGTGAAGAAAAACTCCTG 60.287 50.000 13.29 0.00 0.00 3.86
636 652 2.943033 CACGGTGAAGAAAAACTCCTGT 59.057 45.455 0.74 0.00 0.00 4.00
637 653 3.002348 CACGGTGAAGAAAAACTCCTGTC 59.998 47.826 0.74 0.00 0.00 3.51
638 654 2.221055 CGGTGAAGAAAAACTCCTGTCG 59.779 50.000 0.00 0.00 0.00 4.35
639 655 2.548480 GGTGAAGAAAAACTCCTGTCGG 59.452 50.000 0.00 0.00 0.00 4.79
640 656 2.031944 GTGAAGAAAAACTCCTGTCGGC 60.032 50.000 0.00 0.00 0.00 5.54
641 657 2.218603 GAAGAAAAACTCCTGTCGGCA 58.781 47.619 0.00 0.00 0.00 5.69
642 658 2.568623 AGAAAAACTCCTGTCGGCAT 57.431 45.000 0.00 0.00 0.00 4.40
643 659 2.154462 AGAAAAACTCCTGTCGGCATG 58.846 47.619 0.00 0.00 0.00 4.06
644 660 2.151202 GAAAAACTCCTGTCGGCATGA 58.849 47.619 0.00 0.00 0.00 3.07
645 661 2.496899 AAAACTCCTGTCGGCATGAT 57.503 45.000 0.00 0.00 0.00 2.45
646 662 2.029838 AAACTCCTGTCGGCATGATC 57.970 50.000 0.00 0.00 0.00 2.92
647 663 0.179000 AACTCCTGTCGGCATGATCC 59.821 55.000 0.00 0.00 0.00 3.36
655 671 4.891727 GGCATGATCCGCCGTCGT 62.892 66.667 7.45 0.00 40.35 4.34
656 672 2.890474 GCATGATCCGCCGTCGTT 60.890 61.111 0.00 0.00 0.00 3.85
657 673 2.461110 GCATGATCCGCCGTCGTTT 61.461 57.895 0.00 0.00 0.00 3.60
658 674 1.977594 GCATGATCCGCCGTCGTTTT 61.978 55.000 0.00 0.00 0.00 2.43
659 675 0.446222 CATGATCCGCCGTCGTTTTT 59.554 50.000 0.00 0.00 0.00 1.94
660 676 0.725117 ATGATCCGCCGTCGTTTTTC 59.275 50.000 0.00 0.00 0.00 2.29
661 677 0.600518 TGATCCGCCGTCGTTTTTCA 60.601 50.000 0.00 0.00 0.00 2.69
662 678 0.094730 GATCCGCCGTCGTTTTTCAG 59.905 55.000 0.00 0.00 0.00 3.02
663 679 0.601841 ATCCGCCGTCGTTTTTCAGT 60.602 50.000 0.00 0.00 0.00 3.41
664 680 1.083015 CCGCCGTCGTTTTTCAGTG 60.083 57.895 0.00 0.00 0.00 3.66
665 681 1.721133 CGCCGTCGTTTTTCAGTGC 60.721 57.895 0.00 0.00 0.00 4.40
666 682 1.353804 GCCGTCGTTTTTCAGTGCA 59.646 52.632 0.00 0.00 0.00 4.57
667 683 0.040425 GCCGTCGTTTTTCAGTGCAT 60.040 50.000 0.00 0.00 0.00 3.96
668 684 1.599419 GCCGTCGTTTTTCAGTGCATT 60.599 47.619 0.00 0.00 0.00 3.56
669 685 2.350007 GCCGTCGTTTTTCAGTGCATTA 60.350 45.455 0.00 0.00 0.00 1.90
670 686 3.479006 CCGTCGTTTTTCAGTGCATTAG 58.521 45.455 0.00 0.00 0.00 1.73
671 687 3.059188 CCGTCGTTTTTCAGTGCATTAGT 60.059 43.478 0.00 0.00 0.00 2.24
672 688 3.900116 CGTCGTTTTTCAGTGCATTAGTG 59.100 43.478 0.00 0.00 0.00 2.74
686 702 2.489938 TTAGTGCTTGGGCTTAGTGG 57.510 50.000 0.00 0.00 39.59 4.00
687 703 0.035439 TAGTGCTTGGGCTTAGTGGC 60.035 55.000 0.00 0.00 39.59 5.01
688 704 1.303643 GTGCTTGGGCTTAGTGGCT 60.304 57.895 0.00 0.00 41.48 4.75
689 705 0.895559 GTGCTTGGGCTTAGTGGCTT 60.896 55.000 0.00 0.00 41.48 4.35
690 706 0.695924 TGCTTGGGCTTAGTGGCTTA 59.304 50.000 0.00 0.00 41.48 3.09
691 707 1.095600 GCTTGGGCTTAGTGGCTTAC 58.904 55.000 0.00 0.00 41.48 2.34
692 708 1.613255 GCTTGGGCTTAGTGGCTTACA 60.613 52.381 0.00 0.00 41.48 2.41
693 709 2.945890 GCTTGGGCTTAGTGGCTTACAT 60.946 50.000 0.00 0.00 41.48 2.29
694 710 2.710096 TGGGCTTAGTGGCTTACATC 57.290 50.000 0.00 0.00 41.48 3.06
695 711 1.134521 TGGGCTTAGTGGCTTACATCG 60.135 52.381 0.00 0.00 41.48 3.84
696 712 1.138266 GGGCTTAGTGGCTTACATCGA 59.862 52.381 0.00 0.00 41.48 3.59
697 713 2.224305 GGGCTTAGTGGCTTACATCGAT 60.224 50.000 0.00 0.00 41.48 3.59
698 714 3.467803 GGCTTAGTGGCTTACATCGATT 58.532 45.455 0.00 0.00 38.32 3.34
699 715 4.502604 GGGCTTAGTGGCTTACATCGATTA 60.503 45.833 0.00 0.00 41.48 1.75
700 716 5.054477 GGCTTAGTGGCTTACATCGATTAA 58.946 41.667 0.00 0.00 38.32 1.40
701 717 5.701290 GGCTTAGTGGCTTACATCGATTAAT 59.299 40.000 0.00 0.00 38.32 1.40
702 718 6.204882 GGCTTAGTGGCTTACATCGATTAATT 59.795 38.462 0.00 0.00 38.32 1.40
703 719 7.291567 GCTTAGTGGCTTACATCGATTAATTC 58.708 38.462 0.00 0.00 0.00 2.17
704 720 7.042051 GCTTAGTGGCTTACATCGATTAATTCA 60.042 37.037 0.00 0.00 0.00 2.57
705 721 8.902540 TTAGTGGCTTACATCGATTAATTCAT 57.097 30.769 0.00 0.00 0.00 2.57
706 722 7.426929 AGTGGCTTACATCGATTAATTCATC 57.573 36.000 0.00 0.00 0.00 2.92
707 723 7.220030 AGTGGCTTACATCGATTAATTCATCT 58.780 34.615 0.00 0.00 0.00 2.90
708 724 8.367911 AGTGGCTTACATCGATTAATTCATCTA 58.632 33.333 0.00 0.00 0.00 1.98
739 755 4.607293 ATTTTTCTTTCCAGGGTCTTGC 57.393 40.909 0.00 0.00 0.00 4.01
741 757 1.149101 TTCTTTCCAGGGTCTTGCCT 58.851 50.000 0.00 0.00 37.43 4.75
743 759 1.499007 TCTTTCCAGGGTCTTGCCTTT 59.501 47.619 0.00 0.00 37.43 3.11
746 762 1.995376 TCCAGGGTCTTGCCTTTTTC 58.005 50.000 0.00 0.00 37.43 2.29
748 764 1.604604 CAGGGTCTTGCCTTTTTCGA 58.395 50.000 0.00 0.00 37.43 3.71
752 768 2.352715 GGGTCTTGCCTTTTTCGATTGG 60.353 50.000 0.00 0.00 37.43 3.16
753 769 2.556622 GGTCTTGCCTTTTTCGATTGGA 59.443 45.455 0.00 0.00 0.00 3.53
763 787 5.353123 CCTTTTTCGATTGGAGACGGAAATA 59.647 40.000 0.00 0.00 36.96 1.40
767 791 4.806330 TCGATTGGAGACGGAAATATAGC 58.194 43.478 0.00 0.00 0.00 2.97
768 792 4.523173 TCGATTGGAGACGGAAATATAGCT 59.477 41.667 0.00 0.00 0.00 3.32
769 793 5.010719 TCGATTGGAGACGGAAATATAGCTT 59.989 40.000 0.00 0.00 0.00 3.74
770 794 5.119279 CGATTGGAGACGGAAATATAGCTTG 59.881 44.000 0.00 0.00 0.00 4.01
782 806 7.410485 GGAAATATAGCTTGCTGTTTACTGTC 58.590 38.462 5.26 0.00 0.00 3.51
791 815 6.360681 GCTTGCTGTTTACTGTCAGTTTATTG 59.639 38.462 11.54 1.14 34.57 1.90
793 817 6.058833 TGCTGTTTACTGTCAGTTTATTGGA 58.941 36.000 11.54 0.00 34.57 3.53
794 818 6.017440 TGCTGTTTACTGTCAGTTTATTGGAC 60.017 38.462 11.54 1.32 34.57 4.02
808 832 3.706373 GGACGGCCTCCAAGCAGA 61.706 66.667 0.00 0.00 39.21 4.26
809 833 2.347490 GACGGCCTCCAAGCAGAA 59.653 61.111 0.00 0.00 0.00 3.02
810 834 1.078143 GACGGCCTCCAAGCAGAAT 60.078 57.895 0.00 0.00 0.00 2.40
811 835 1.078143 ACGGCCTCCAAGCAGAATC 60.078 57.895 0.00 0.00 0.00 2.52
812 836 2.176273 CGGCCTCCAAGCAGAATCG 61.176 63.158 0.00 0.00 0.00 3.34
813 837 1.221840 GGCCTCCAAGCAGAATCGA 59.778 57.895 0.00 0.00 0.00 3.59
814 838 1.092345 GGCCTCCAAGCAGAATCGAC 61.092 60.000 0.00 0.00 0.00 4.20
815 839 1.424493 GCCTCCAAGCAGAATCGACG 61.424 60.000 0.00 0.00 0.00 5.12
816 840 0.108615 CCTCCAAGCAGAATCGACGT 60.109 55.000 0.00 0.00 0.00 4.34
817 841 1.134367 CCTCCAAGCAGAATCGACGTA 59.866 52.381 0.00 0.00 0.00 3.57
818 842 2.455032 CTCCAAGCAGAATCGACGTAG 58.545 52.381 0.00 0.00 0.00 3.51
819 843 0.924090 CCAAGCAGAATCGACGTAGC 59.076 55.000 0.00 0.00 0.00 3.58
820 844 1.629013 CAAGCAGAATCGACGTAGCA 58.371 50.000 0.00 0.00 0.00 3.49
821 845 1.992667 CAAGCAGAATCGACGTAGCAA 59.007 47.619 0.00 0.00 0.00 3.91
822 846 1.914634 AGCAGAATCGACGTAGCAAG 58.085 50.000 0.00 0.00 0.00 4.01
823 847 0.299003 GCAGAATCGACGTAGCAAGC 59.701 55.000 0.00 0.00 0.00 4.01
824 848 1.914634 CAGAATCGACGTAGCAAGCT 58.085 50.000 0.00 0.00 0.00 3.74
825 849 2.263077 CAGAATCGACGTAGCAAGCTT 58.737 47.619 0.00 0.00 0.00 3.74
826 850 2.028523 CAGAATCGACGTAGCAAGCTTG 59.971 50.000 22.44 22.44 0.00 4.01
827 851 1.324736 GAATCGACGTAGCAAGCTTGG 59.675 52.381 27.10 13.18 0.00 3.61
828 852 0.246635 ATCGACGTAGCAAGCTTGGT 59.753 50.000 31.64 31.64 42.29 3.67
829 853 0.666274 TCGACGTAGCAAGCTTGGTG 60.666 55.000 35.13 23.86 39.55 4.17
830 854 0.666274 CGACGTAGCAAGCTTGGTGA 60.666 55.000 35.13 19.19 39.55 4.02
831 855 1.508632 GACGTAGCAAGCTTGGTGAA 58.491 50.000 35.13 18.02 39.55 3.18
832 856 1.461127 GACGTAGCAAGCTTGGTGAAG 59.539 52.381 35.13 26.87 39.55 3.02
833 857 1.070134 ACGTAGCAAGCTTGGTGAAGA 59.930 47.619 35.13 16.96 39.55 2.87
834 858 2.143122 CGTAGCAAGCTTGGTGAAGAA 58.857 47.619 35.13 16.59 39.55 2.52
835 859 2.548057 CGTAGCAAGCTTGGTGAAGAAA 59.452 45.455 35.13 15.88 39.55 2.52
836 860 3.003275 CGTAGCAAGCTTGGTGAAGAAAA 59.997 43.478 35.13 15.18 39.55 2.29
837 861 4.497340 CGTAGCAAGCTTGGTGAAGAAAAA 60.497 41.667 35.13 14.47 39.55 1.94
838 862 4.677673 AGCAAGCTTGGTGAAGAAAAAT 57.322 36.364 29.20 0.00 37.53 1.82
839 863 5.027293 AGCAAGCTTGGTGAAGAAAAATT 57.973 34.783 29.20 0.00 37.53 1.82
840 864 5.052481 AGCAAGCTTGGTGAAGAAAAATTC 58.948 37.500 29.20 6.59 37.53 2.17
841 865 4.212004 GCAAGCTTGGTGAAGAAAAATTCC 59.788 41.667 27.10 1.38 0.00 3.01
842 866 4.243007 AGCTTGGTGAAGAAAAATTCCG 57.757 40.909 0.00 0.00 0.00 4.30
843 867 3.005791 AGCTTGGTGAAGAAAAATTCCGG 59.994 43.478 0.00 0.00 0.00 5.14
844 868 3.243737 GCTTGGTGAAGAAAAATTCCGGT 60.244 43.478 0.00 0.00 0.00 5.28
845 869 4.546570 CTTGGTGAAGAAAAATTCCGGTC 58.453 43.478 0.00 0.00 0.00 4.79
846 870 2.550606 TGGTGAAGAAAAATTCCGGTCG 59.449 45.455 0.00 0.00 0.00 4.79
847 871 2.095415 GGTGAAGAAAAATTCCGGTCGG 60.095 50.000 0.00 2.52 0.00 4.79
848 872 2.551032 GTGAAGAAAAATTCCGGTCGGT 59.449 45.455 9.36 0.00 36.47 4.69
849 873 3.747529 GTGAAGAAAAATTCCGGTCGGTA 59.252 43.478 9.36 0.00 36.47 4.02
850 874 4.393990 GTGAAGAAAAATTCCGGTCGGTAT 59.606 41.667 9.36 2.42 36.47 2.73
851 875 4.393680 TGAAGAAAAATTCCGGTCGGTATG 59.606 41.667 9.36 0.00 36.47 2.39
852 876 4.210724 AGAAAAATTCCGGTCGGTATGA 57.789 40.909 9.36 0.00 36.47 2.15
853 877 4.777463 AGAAAAATTCCGGTCGGTATGAT 58.223 39.130 9.36 0.00 36.47 2.45
854 878 4.814771 AGAAAAATTCCGGTCGGTATGATC 59.185 41.667 9.36 5.40 36.47 2.92
855 879 2.833631 AATTCCGGTCGGTATGATCC 57.166 50.000 9.36 0.00 36.47 3.36
867 891 2.218603 GTATGATCCGCCGGTGATTTT 58.781 47.619 18.79 6.75 0.00 1.82
887 911 9.195411 TGATTTTTAGCTTTTTCAGTGCATTAG 57.805 29.630 0.00 0.00 0.00 1.73
889 913 7.928908 TTTTAGCTTTTTCAGTGCATTAGTG 57.071 32.000 0.00 0.00 0.00 2.74
891 915 2.989166 GCTTTTTCAGTGCATTAGTGGC 59.011 45.455 0.00 0.00 0.00 5.01
892 916 3.305608 GCTTTTTCAGTGCATTAGTGGCT 60.306 43.478 0.00 0.00 0.00 4.75
893 917 3.921119 TTTTCAGTGCATTAGTGGCTG 57.079 42.857 0.00 0.00 0.00 4.85
894 918 1.825090 TTCAGTGCATTAGTGGCTGG 58.175 50.000 0.00 0.00 0.00 4.85
895 919 0.035152 TCAGTGCATTAGTGGCTGGG 60.035 55.000 0.00 0.00 0.00 4.45
896 920 1.379044 AGTGCATTAGTGGCTGGGC 60.379 57.895 0.00 0.00 0.00 5.36
897 921 1.379044 GTGCATTAGTGGCTGGGCT 60.379 57.895 0.00 0.00 0.00 5.19
898 922 1.077501 TGCATTAGTGGCTGGGCTC 60.078 57.895 0.00 0.00 0.00 4.70
899 923 1.077501 GCATTAGTGGCTGGGCTCA 60.078 57.895 0.00 0.00 0.00 4.26
900 924 1.099879 GCATTAGTGGCTGGGCTCAG 61.100 60.000 10.01 10.01 43.64 3.35
901 925 0.543277 CATTAGTGGCTGGGCTCAGA 59.457 55.000 20.53 0.00 43.49 3.27
902 926 0.835941 ATTAGTGGCTGGGCTCAGAG 59.164 55.000 20.53 0.00 43.49 3.35
903 927 1.267574 TTAGTGGCTGGGCTCAGAGG 61.268 60.000 20.53 0.00 43.49 3.69
904 928 4.792804 GTGGCTGGGCTCAGAGGC 62.793 72.222 20.53 15.82 43.49 4.70
906 930 4.173924 GGCTGGGCTCAGAGGCTC 62.174 72.222 20.53 6.34 43.49 4.70
907 931 3.397439 GCTGGGCTCAGAGGCTCA 61.397 66.667 20.53 16.95 43.49 4.26
908 932 2.583520 CTGGGCTCAGAGGCTCAC 59.416 66.667 22.57 7.77 43.49 3.51
909 933 2.203832 TGGGCTCAGAGGCTCACA 60.204 61.111 22.57 10.30 37.83 3.58
910 934 1.614525 TGGGCTCAGAGGCTCACAT 60.615 57.895 22.57 0.00 37.83 3.21
921 947 6.763355 TCAGAGGCTCACATTAGATTAATCC 58.237 40.000 18.26 0.00 0.00 3.01
940 966 4.733077 TCCATCTTTTTCCAGGGTGTAA 57.267 40.909 0.00 0.00 0.00 2.41
941 967 5.068215 TCCATCTTTTTCCAGGGTGTAAA 57.932 39.130 0.00 0.00 0.00 2.01
942 968 4.830600 TCCATCTTTTTCCAGGGTGTAAAC 59.169 41.667 0.00 0.00 0.00 2.01
943 969 4.832823 CCATCTTTTTCCAGGGTGTAAACT 59.167 41.667 0.00 0.00 0.00 2.66
944 970 5.278957 CCATCTTTTTCCAGGGTGTAAACTG 60.279 44.000 0.00 0.00 34.54 3.16
945 971 5.118729 TCTTTTTCCAGGGTGTAAACTGA 57.881 39.130 0.00 0.00 36.86 3.41
946 972 5.511363 TCTTTTTCCAGGGTGTAAACTGAA 58.489 37.500 0.00 0.00 36.86 3.02
947 973 5.592688 TCTTTTTCCAGGGTGTAAACTGAAG 59.407 40.000 0.00 0.00 36.86 3.02
948 974 4.781775 TTTCCAGGGTGTAAACTGAAGA 57.218 40.909 0.00 0.00 36.86 2.87
949 975 3.764237 TCCAGGGTGTAAACTGAAGAC 57.236 47.619 0.00 0.00 36.86 3.01
950 976 2.036733 TCCAGGGTGTAAACTGAAGACG 59.963 50.000 0.00 0.00 36.86 4.18
951 977 1.798813 CAGGGTGTAAACTGAAGACGC 59.201 52.381 0.00 0.00 36.86 5.19
952 978 1.414919 AGGGTGTAAACTGAAGACGCA 59.585 47.619 0.00 0.00 0.00 5.24
953 979 2.038557 AGGGTGTAAACTGAAGACGCAT 59.961 45.455 0.00 0.00 0.00 4.73
954 980 2.415512 GGGTGTAAACTGAAGACGCATC 59.584 50.000 0.00 0.00 0.00 3.91
955 981 2.415512 GGTGTAAACTGAAGACGCATCC 59.584 50.000 0.00 0.00 0.00 3.51
956 982 2.415512 GTGTAAACTGAAGACGCATCCC 59.584 50.000 0.00 0.00 0.00 3.85
957 983 2.301870 TGTAAACTGAAGACGCATCCCT 59.698 45.455 0.00 0.00 0.00 4.20
958 984 3.512329 TGTAAACTGAAGACGCATCCCTA 59.488 43.478 0.00 0.00 0.00 3.53
959 985 2.969628 AACTGAAGACGCATCCCTAG 57.030 50.000 0.00 0.00 0.00 3.02
960 986 1.853963 ACTGAAGACGCATCCCTAGT 58.146 50.000 0.00 0.00 0.00 2.57
961 987 1.478510 ACTGAAGACGCATCCCTAGTG 59.521 52.381 0.00 0.00 0.00 2.74
962 988 1.478510 CTGAAGACGCATCCCTAGTGT 59.521 52.381 0.00 0.00 0.00 3.55
963 989 2.688446 CTGAAGACGCATCCCTAGTGTA 59.312 50.000 0.00 0.00 0.00 2.90
976 1002 3.699538 CCCTAGTGTACTGTCAGTGCATA 59.300 47.826 24.05 16.04 42.55 3.14
977 1003 4.342378 CCCTAGTGTACTGTCAGTGCATAT 59.658 45.833 24.05 18.17 42.55 1.78
1067 1110 2.935481 TGTCCTGGGGAAGCTGGG 60.935 66.667 0.00 0.00 31.38 4.45
1074 1117 1.201429 TGGGGAAGCTGGGAACTCTC 61.201 60.000 0.00 0.00 0.00 3.20
1079 1122 1.893919 AAGCTGGGAACTCTCCTCGC 61.894 60.000 0.00 0.00 42.05 5.03
1083 1126 0.541998 TGGGAACTCTCCTCGCTGAA 60.542 55.000 0.00 0.00 42.05 3.02
1091 1134 2.354510 CTCTCCTCGCTGAAGAGTACAG 59.645 54.545 0.00 0.00 36.56 2.74
1244 1287 3.682718 CGGGAGCTTTCTTATGACATGGT 60.683 47.826 0.00 0.00 0.00 3.55
1535 1578 3.112263 TGGGAATCGATGAACCTAAGGT 58.888 45.455 0.00 0.00 37.65 3.50
1838 1896 4.766404 ATTTTCTAGCCGACAAAAGGTG 57.234 40.909 0.00 0.00 0.00 4.00
1849 1907 2.076863 ACAAAAGGTGCGTGCTATCTC 58.923 47.619 0.00 0.00 0.00 2.75
1856 1914 3.576118 AGGTGCGTGCTATCTCTATCATT 59.424 43.478 0.00 0.00 0.00 2.57
1857 1915 4.039730 AGGTGCGTGCTATCTCTATCATTT 59.960 41.667 0.00 0.00 0.00 2.32
1918 2008 7.282332 TCTCATCATCTGTACTAGTGGAATG 57.718 40.000 5.39 4.54 0.00 2.67
1923 2013 6.398095 TCATCTGTACTAGTGGAATGTGTTG 58.602 40.000 5.39 0.00 0.00 3.33
2045 2139 7.803279 AAACAAAAGAAATAGAACGGAGAGT 57.197 32.000 0.00 0.00 0.00 3.24
2051 2145 6.197364 AGAAATAGAACGGAGAGTGTACAG 57.803 41.667 0.00 0.00 0.00 2.74
2056 2150 4.337145 AGAACGGAGAGTGTACAGAGAAT 58.663 43.478 0.00 0.00 0.00 2.40
2148 2259 6.116126 AGACATAGCTAATCCCTTTGTTGAC 58.884 40.000 0.00 0.00 0.00 3.18
2206 2410 6.714810 TGTTTGTAGCACTTTACCTCATGAAT 59.285 34.615 0.00 0.00 0.00 2.57
2267 2471 0.721718 GCAAGTGTAGCATCCACGTC 59.278 55.000 0.00 0.00 37.88 4.34
2273 2477 0.249398 GTAGCATCCACGTCACCCTT 59.751 55.000 0.00 0.00 0.00 3.95
2274 2478 0.249120 TAGCATCCACGTCACCCTTG 59.751 55.000 0.00 0.00 0.00 3.61
2275 2479 1.302511 GCATCCACGTCACCCTTGT 60.303 57.895 0.00 0.00 0.00 3.16
2276 2480 0.889186 GCATCCACGTCACCCTTGTT 60.889 55.000 0.00 0.00 0.00 2.83
2277 2481 1.604604 CATCCACGTCACCCTTGTTT 58.395 50.000 0.00 0.00 0.00 2.83
2278 2482 1.953686 CATCCACGTCACCCTTGTTTT 59.046 47.619 0.00 0.00 0.00 2.43
2279 2483 1.670791 TCCACGTCACCCTTGTTTTC 58.329 50.000 0.00 0.00 0.00 2.29
2280 2484 1.065345 TCCACGTCACCCTTGTTTTCA 60.065 47.619 0.00 0.00 0.00 2.69
2281 2485 1.064952 CCACGTCACCCTTGTTTTCAC 59.935 52.381 0.00 0.00 0.00 3.18
2303 2507 1.181098 AAAGGCTGCCACACACATCC 61.181 55.000 22.65 0.00 0.00 3.51
2304 2508 2.282391 GGCTGCCACACACATCCA 60.282 61.111 15.17 0.00 0.00 3.41
2305 2509 1.902918 GGCTGCCACACACATCCAA 60.903 57.895 15.17 0.00 0.00 3.53
2331 2589 2.479566 TTGCACCTCCATTCACTCTC 57.520 50.000 0.00 0.00 0.00 3.20
2360 2618 1.071071 CTCTCGTACCACCAACCCAAA 59.929 52.381 0.00 0.00 0.00 3.28
2439 2697 4.379174 GCCCTACATGGCCATACG 57.621 61.111 20.30 10.00 46.11 3.06
2453 2711 2.032894 GCCATACGTCATCGGTGATTTG 60.033 50.000 0.00 0.00 41.85 2.32
2456 2714 2.448926 ACGTCATCGGTGATTTGACA 57.551 45.000 0.00 0.00 39.75 3.58
2504 2770 8.718102 TTACTAGCTTAACTGAGCCTAAATTG 57.282 34.615 0.00 0.00 43.74 2.32
2554 2820 4.154737 TGCTCCTTTTCATTGATGAAGACG 59.845 41.667 6.53 0.00 46.34 4.18
2595 2861 8.244113 AGTCAGTAACACAAGAAAAGAAAAAGG 58.756 33.333 0.00 0.00 0.00 3.11
2599 2865 6.480524 AACACAAGAAAAGAAAAAGGCAAC 57.519 33.333 0.00 0.00 0.00 4.17
2601 2867 5.639082 ACACAAGAAAAGAAAAAGGCAACAG 59.361 36.000 0.00 0.00 41.41 3.16
2604 2870 5.659440 AGAAAAGAAAAAGGCAACAGTCA 57.341 34.783 0.00 0.00 41.41 3.41
2619 2885 0.106268 AGTCACAATTGGCCCACACA 60.106 50.000 10.83 0.00 0.00 3.72
2635 2939 4.462483 CCCACACAGCCAGTTAAAACATAT 59.538 41.667 0.00 0.00 0.00 1.78
2637 2941 6.454795 CCACACAGCCAGTTAAAACATATTT 58.545 36.000 0.00 0.00 0.00 1.40
2699 3003 6.825213 TCATTTTGTATCACTGGATCTTCTGG 59.175 38.462 0.00 0.00 34.89 3.86
2724 3386 4.441913 CCACACCAAGATTCTTGCTTGTTT 60.442 41.667 20.78 7.68 40.79 2.83
2766 3429 2.897326 GCCCCTTCCACACAAATTAAGT 59.103 45.455 0.00 0.00 0.00 2.24
2768 3431 4.709886 GCCCCTTCCACACAAATTAAGTAT 59.290 41.667 0.00 0.00 0.00 2.12
2841 3504 5.067674 TCCAGTTTTGATCTTTTCTGTGGTG 59.932 40.000 0.00 0.00 0.00 4.17
2855 3518 2.227388 CTGTGGTGATGCCTCTTGTTTC 59.773 50.000 0.00 0.00 38.35 2.78
2863 3526 6.260714 GGTGATGCCTCTTGTTTCAAAAATTT 59.739 34.615 0.00 0.00 0.00 1.82
3174 3842 5.190925 TGCATTCCCCACTACAAGTTATAGT 59.809 40.000 0.00 0.00 32.98 2.12
3233 3901 4.103357 GCTCATTCATGCTGTTCAACATC 58.897 43.478 0.00 0.00 0.00 3.06
3281 3949 4.823989 GCCTCTTAATATGGTGCACTCAAT 59.176 41.667 17.98 10.73 0.00 2.57
3488 4156 4.378459 CCGTGCACTTGAAAGGAATTCTAC 60.378 45.833 16.19 0.00 38.92 2.59
3558 4226 7.231467 TGCCTCCTTATCTAAAAACTTGTCTT 58.769 34.615 0.00 0.00 0.00 3.01
3669 4349 6.709397 CAGAAGGCAGATACACAACATATGAT 59.291 38.462 10.38 0.00 0.00 2.45
4182 4911 6.153067 CCTAAGTGACACTTGTGTAGAAGAG 58.847 44.000 27.44 14.55 39.11 2.85
4410 5166 7.043961 TGATTCTGACACTGAGGATACATAC 57.956 40.000 0.00 0.00 41.41 2.39
4522 5279 2.854522 GCTACCCAGCGTGATTTGT 58.145 52.632 0.00 0.00 38.22 2.83
4609 5369 1.150135 TGTCTCCCTCCCAGTTCTCTT 59.850 52.381 0.00 0.00 0.00 2.85
4725 5498 7.068226 GCTCTTTTTCTCTCTCTATACTCCTGT 59.932 40.741 0.00 0.00 0.00 4.00
4738 5521 1.190643 CTCCTGTTCTCTCTGACCCC 58.809 60.000 0.00 0.00 0.00 4.95
4894 5682 3.096092 ACGCTTCAATCTCCTCTCTCTT 58.904 45.455 0.00 0.00 0.00 2.85
4897 5686 4.498009 CGCTTCAATCTCCTCTCTCTTCTC 60.498 50.000 0.00 0.00 0.00 2.87
4901 5690 1.687492 TCTCCTCTCTCTTCTCCCCA 58.313 55.000 0.00 0.00 0.00 4.96
4902 5691 2.222271 TCTCCTCTCTCTTCTCCCCAT 58.778 52.381 0.00 0.00 0.00 4.00
4986 5776 2.989166 GGCAGCTTTTTATGTGTGAAGC 59.011 45.455 0.00 0.00 43.57 3.86
5223 6015 1.675641 GCAGCCACACCTTTCCGAT 60.676 57.895 0.00 0.00 0.00 4.18
5225 6017 1.369625 CAGCCACACCTTTCCGATAC 58.630 55.000 0.00 0.00 0.00 2.24
5226 6018 0.981183 AGCCACACCTTTCCGATACA 59.019 50.000 0.00 0.00 0.00 2.29
5227 6019 1.559682 AGCCACACCTTTCCGATACAT 59.440 47.619 0.00 0.00 0.00 2.29
5228 6020 2.769663 AGCCACACCTTTCCGATACATA 59.230 45.455 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.182537 CCTCGGCAGCCAAAATGC 59.817 61.111 13.30 0.00 43.09 3.56
5 6 0.539438 TTGACCTCGGCAGCCAAAAT 60.539 50.000 13.30 0.00 0.00 1.82
6 7 1.152860 TTGACCTCGGCAGCCAAAA 60.153 52.632 13.30 0.00 0.00 2.44
8 9 2.281484 GTTGACCTCGGCAGCCAA 60.281 61.111 13.30 0.00 0.00 4.52
9 10 3.241530 AGTTGACCTCGGCAGCCA 61.242 61.111 13.30 0.00 0.00 4.75
10 11 2.743928 CAGTTGACCTCGGCAGCC 60.744 66.667 0.00 0.00 0.00 4.85
11 12 3.426568 GCAGTTGACCTCGGCAGC 61.427 66.667 0.00 0.00 0.00 5.25
12 13 1.294659 GAAGCAGTTGACCTCGGCAG 61.295 60.000 0.00 0.00 0.00 4.85
13 14 1.301716 GAAGCAGTTGACCTCGGCA 60.302 57.895 0.00 0.00 0.00 5.69
14 15 1.004440 AGAAGCAGTTGACCTCGGC 60.004 57.895 0.00 0.00 0.00 5.54
15 16 0.671781 CCAGAAGCAGTTGACCTCGG 60.672 60.000 0.00 0.00 0.00 4.63
16 17 0.671781 CCCAGAAGCAGTTGACCTCG 60.672 60.000 0.00 0.00 0.00 4.63
17 18 0.398318 ACCCAGAAGCAGTTGACCTC 59.602 55.000 0.00 0.00 0.00 3.85
18 19 0.109342 CACCCAGAAGCAGTTGACCT 59.891 55.000 0.00 0.00 0.00 3.85
19 20 0.108585 TCACCCAGAAGCAGTTGACC 59.891 55.000 0.00 0.00 0.00 4.02
20 21 1.967319 TTCACCCAGAAGCAGTTGAC 58.033 50.000 0.00 0.00 0.00 3.18
21 22 2.957402 ATTCACCCAGAAGCAGTTGA 57.043 45.000 0.00 0.00 40.15 3.18
22 23 3.679389 ACTATTCACCCAGAAGCAGTTG 58.321 45.455 0.00 0.00 40.15 3.16
23 24 5.499004 TTACTATTCACCCAGAAGCAGTT 57.501 39.130 0.00 0.00 40.15 3.16
24 25 5.499004 TTTACTATTCACCCAGAAGCAGT 57.501 39.130 0.00 0.00 40.15 4.40
25 26 8.506168 TTTATTTACTATTCACCCAGAAGCAG 57.494 34.615 0.00 0.00 40.15 4.24
26 27 8.871629 TTTTATTTACTATTCACCCAGAAGCA 57.128 30.769 0.00 0.00 40.15 3.91
70 71 9.040259 CCTAGGAGGATATGTGAATTCAGATTA 57.960 37.037 21.75 9.57 37.67 1.75
71 72 7.528543 GCCTAGGAGGATATGTGAATTCAGATT 60.529 40.741 21.75 10.75 37.67 2.40
72 73 6.070309 GCCTAGGAGGATATGTGAATTCAGAT 60.070 42.308 20.57 20.57 37.67 2.90
73 74 5.247110 GCCTAGGAGGATATGTGAATTCAGA 59.753 44.000 14.75 8.30 37.67 3.27
74 75 5.486526 GCCTAGGAGGATATGTGAATTCAG 58.513 45.833 14.75 0.00 37.67 3.02
75 76 4.287067 GGCCTAGGAGGATATGTGAATTCA 59.713 45.833 14.75 3.38 37.67 2.57
76 77 4.287067 TGGCCTAGGAGGATATGTGAATTC 59.713 45.833 14.75 0.00 37.67 2.17
77 78 4.042187 GTGGCCTAGGAGGATATGTGAATT 59.958 45.833 14.75 0.00 37.67 2.17
78 79 3.584848 GTGGCCTAGGAGGATATGTGAAT 59.415 47.826 14.75 0.00 37.67 2.57
79 80 2.972713 GTGGCCTAGGAGGATATGTGAA 59.027 50.000 14.75 0.00 37.67 3.18
80 81 2.609747 GTGGCCTAGGAGGATATGTGA 58.390 52.381 14.75 0.00 37.67 3.58
81 82 1.273606 CGTGGCCTAGGAGGATATGTG 59.726 57.143 14.75 0.00 37.67 3.21
82 83 1.133136 ACGTGGCCTAGGAGGATATGT 60.133 52.381 14.75 1.73 37.67 2.29
83 84 1.273606 CACGTGGCCTAGGAGGATATG 59.726 57.143 14.75 0.00 37.67 1.78
84 85 1.633774 CACGTGGCCTAGGAGGATAT 58.366 55.000 14.75 0.00 37.67 1.63
85 86 0.469331 CCACGTGGCCTAGGAGGATA 60.469 60.000 24.02 0.00 37.67 2.59
86 87 1.762460 CCACGTGGCCTAGGAGGAT 60.762 63.158 24.02 0.00 37.67 3.24
87 88 2.363795 CCACGTGGCCTAGGAGGA 60.364 66.667 24.02 0.00 37.67 3.71
88 89 2.363795 TCCACGTGGCCTAGGAGG 60.364 66.667 30.25 2.67 38.80 4.30
89 90 3.211288 CTCCACGTGGCCTAGGAG 58.789 66.667 30.25 16.68 41.43 3.69
107 108 1.059584 TCTCTGTTCTGTGGGGCCAA 61.060 55.000 4.39 0.00 0.00 4.52
108 109 1.461268 TCTCTGTTCTGTGGGGCCA 60.461 57.895 4.39 0.00 0.00 5.36
111 112 1.342074 TGTCTCTCTGTTCTGTGGGG 58.658 55.000 0.00 0.00 0.00 4.96
131 132 1.543208 CGCTTGGCCTTATCCTGCATA 60.543 52.381 3.32 0.00 0.00 3.14
134 135 1.153168 TCGCTTGGCCTTATCCTGC 60.153 57.895 3.32 0.00 0.00 4.85
135 136 1.154205 CGTCGCTTGGCCTTATCCTG 61.154 60.000 3.32 0.00 0.00 3.86
164 165 1.609501 CGAGTGAGAAGGGGGTGGA 60.610 63.158 0.00 0.00 0.00 4.02
165 166 2.982130 CGAGTGAGAAGGGGGTGG 59.018 66.667 0.00 0.00 0.00 4.61
166 167 2.266055 GCGAGTGAGAAGGGGGTG 59.734 66.667 0.00 0.00 0.00 4.61
167 168 3.382832 CGCGAGTGAGAAGGGGGT 61.383 66.667 0.00 0.00 0.00 4.95
168 169 4.148825 CCGCGAGTGAGAAGGGGG 62.149 72.222 8.23 0.00 34.77 5.40
169 170 3.382832 ACCGCGAGTGAGAAGGGG 61.383 66.667 8.23 0.00 42.75 4.79
211 212 2.676822 AGGAGAGTGAAGCGGCGA 60.677 61.111 12.98 0.00 0.00 5.54
214 215 1.137825 GACGAGGAGAGTGAAGCGG 59.862 63.158 0.00 0.00 0.00 5.52
218 219 2.687805 CGCCGACGAGGAGAGTGAA 61.688 63.158 0.00 0.00 43.02 3.18
219 220 3.125573 CGCCGACGAGGAGAGTGA 61.126 66.667 0.00 0.00 43.02 3.41
220 221 4.180946 CCGCCGACGAGGAGAGTG 62.181 72.222 0.00 0.00 43.02 3.51
250 258 3.686045 CTAGCGGGATCGGGAGGC 61.686 72.222 0.00 0.00 36.79 4.70
252 260 1.074423 TACCTAGCGGGATCGGGAG 59.926 63.158 5.79 0.00 38.76 4.30
253 261 1.228367 GTACCTAGCGGGATCGGGA 60.228 63.158 5.79 0.00 38.76 5.14
255 263 2.623915 CCGTACCTAGCGGGATCGG 61.624 68.421 17.22 17.22 44.98 4.18
295 303 0.467804 GAGGAGGAGATGGAAGCACC 59.532 60.000 0.00 0.00 39.54 5.01
302 310 1.999648 CTCAGGAGAGGAGGAGATGG 58.000 60.000 0.00 0.00 38.26 3.51
351 359 2.663188 GATCGATCCCGTGCAGGC 60.663 66.667 14.76 0.00 39.21 4.85
354 362 0.668535 CTACTGATCGATCCCGTGCA 59.331 55.000 22.31 2.50 37.05 4.57
377 385 0.741221 GGACAATCTCTGTGCGGGAC 60.741 60.000 0.00 0.00 38.84 4.46
378 386 1.596934 GGACAATCTCTGTGCGGGA 59.403 57.895 0.00 0.00 38.84 5.14
379 387 4.208632 GGACAATCTCTGTGCGGG 57.791 61.111 0.00 0.00 38.84 6.13
384 392 3.259374 ACTGATTCACGGACAATCTCTGT 59.741 43.478 5.26 0.00 42.61 3.41
385 393 3.854666 ACTGATTCACGGACAATCTCTG 58.145 45.455 5.26 0.00 32.32 3.35
386 394 4.221703 AGAACTGATTCACGGACAATCTCT 59.778 41.667 5.26 0.00 37.29 3.10
387 395 4.499183 AGAACTGATTCACGGACAATCTC 58.501 43.478 5.26 0.00 37.29 2.75
388 396 4.543590 AGAACTGATTCACGGACAATCT 57.456 40.909 5.26 0.00 37.29 2.40
389 397 5.613358 AAAGAACTGATTCACGGACAATC 57.387 39.130 0.00 0.00 37.29 2.67
390 398 6.039270 TGAAAAAGAACTGATTCACGGACAAT 59.961 34.615 0.00 0.00 37.29 2.71
391 399 5.355630 TGAAAAAGAACTGATTCACGGACAA 59.644 36.000 0.00 0.00 37.29 3.18
392 400 4.878971 TGAAAAAGAACTGATTCACGGACA 59.121 37.500 0.00 0.00 37.29 4.02
393 401 5.418310 TGAAAAAGAACTGATTCACGGAC 57.582 39.130 0.00 0.00 37.29 4.79
394 402 4.515191 CCTGAAAAAGAACTGATTCACGGA 59.485 41.667 0.00 0.00 37.29 4.69
395 403 4.320494 CCCTGAAAAAGAACTGATTCACGG 60.320 45.833 0.00 0.00 37.29 4.94
396 404 4.275936 ACCCTGAAAAAGAACTGATTCACG 59.724 41.667 0.00 0.00 37.29 4.35
397 405 5.774498 ACCCTGAAAAAGAACTGATTCAC 57.226 39.130 0.00 0.00 37.29 3.18
398 406 5.890985 TGAACCCTGAAAAAGAACTGATTCA 59.109 36.000 0.00 0.00 37.29 2.57
404 412 4.757149 CGATCTGAACCCTGAAAAAGAACT 59.243 41.667 0.00 0.00 0.00 3.01
410 418 2.297880 TCGTCGATCTGAACCCTGAAAA 59.702 45.455 0.00 0.00 0.00 2.29
414 422 0.523546 CGTCGTCGATCTGAACCCTG 60.524 60.000 0.00 0.00 39.71 4.45
445 453 4.647611 TGACCGTGAACAGTGGAATTTAT 58.352 39.130 0.00 0.00 0.00 1.40
447 455 2.878406 CTGACCGTGAACAGTGGAATTT 59.122 45.455 0.00 0.00 0.00 1.82
483 499 2.583045 GCTCGCTCTGCTCTCAGC 60.583 66.667 0.00 0.00 42.82 4.26
495 511 1.585002 CAGCTCAGAGTACGCTCGC 60.585 63.158 8.73 8.73 46.03 5.03
501 517 2.032377 CGCTAGTAGCAGCTCAGAGTAC 60.032 54.545 21.70 0.00 42.58 2.73
502 518 2.214347 CGCTAGTAGCAGCTCAGAGTA 58.786 52.381 21.70 0.00 42.58 2.59
508 524 2.032377 CAGAGTACGCTAGTAGCAGCTC 60.032 54.545 21.70 21.16 42.58 4.09
515 531 4.259356 TGAAAGCTCAGAGTACGCTAGTA 58.741 43.478 0.00 0.00 32.90 1.82
541 557 5.987019 ATAATCCAAGTTAGCCAAGGGTA 57.013 39.130 0.00 0.00 0.00 3.69
542 558 4.881157 ATAATCCAAGTTAGCCAAGGGT 57.119 40.909 0.00 0.00 0.00 4.34
543 559 5.893824 AGAAATAATCCAAGTTAGCCAAGGG 59.106 40.000 0.00 0.00 0.00 3.95
544 560 6.830838 AGAGAAATAATCCAAGTTAGCCAAGG 59.169 38.462 0.00 0.00 0.00 3.61
545 561 7.872113 AGAGAAATAATCCAAGTTAGCCAAG 57.128 36.000 0.00 0.00 0.00 3.61
546 562 8.650143 AAAGAGAAATAATCCAAGTTAGCCAA 57.350 30.769 0.00 0.00 0.00 4.52
547 563 7.339466 GGAAAGAGAAATAATCCAAGTTAGCCA 59.661 37.037 0.00 0.00 0.00 4.75
548 564 7.339466 TGGAAAGAGAAATAATCCAAGTTAGCC 59.661 37.037 0.00 0.00 37.24 3.93
549 565 8.281212 TGGAAAGAGAAATAATCCAAGTTAGC 57.719 34.615 0.00 0.00 37.24 3.09
550 566 9.454859 ACTGGAAAGAGAAATAATCCAAGTTAG 57.545 33.333 0.00 0.00 39.54 2.34
551 567 9.807921 AACTGGAAAGAGAAATAATCCAAGTTA 57.192 29.630 0.00 0.00 39.54 2.24
552 568 8.712228 AACTGGAAAGAGAAATAATCCAAGTT 57.288 30.769 0.00 0.00 39.54 2.66
553 569 8.712228 AAACTGGAAAGAGAAATAATCCAAGT 57.288 30.769 0.00 0.00 39.54 3.16
557 573 9.937175 CGAATAAACTGGAAAGAGAAATAATCC 57.063 33.333 0.00 0.00 0.00 3.01
560 576 9.162764 CCTCGAATAAACTGGAAAGAGAAATAA 57.837 33.333 0.00 0.00 0.00 1.40
561 577 7.769044 CCCTCGAATAAACTGGAAAGAGAAATA 59.231 37.037 0.00 0.00 0.00 1.40
562 578 6.599638 CCCTCGAATAAACTGGAAAGAGAAAT 59.400 38.462 0.00 0.00 0.00 2.17
563 579 5.938125 CCCTCGAATAAACTGGAAAGAGAAA 59.062 40.000 0.00 0.00 0.00 2.52
564 580 5.488341 CCCTCGAATAAACTGGAAAGAGAA 58.512 41.667 0.00 0.00 0.00 2.87
565 581 4.623171 GCCCTCGAATAAACTGGAAAGAGA 60.623 45.833 0.00 0.00 0.00 3.10
566 582 3.623510 GCCCTCGAATAAACTGGAAAGAG 59.376 47.826 0.00 0.00 0.00 2.85
567 583 3.606687 GCCCTCGAATAAACTGGAAAGA 58.393 45.455 0.00 0.00 0.00 2.52
568 584 2.683362 GGCCCTCGAATAAACTGGAAAG 59.317 50.000 0.00 0.00 0.00 2.62
569 585 2.619590 GGGCCCTCGAATAAACTGGAAA 60.620 50.000 17.04 0.00 0.00 3.13
570 586 1.064979 GGGCCCTCGAATAAACTGGAA 60.065 52.381 17.04 0.00 0.00 3.53
571 587 0.544697 GGGCCCTCGAATAAACTGGA 59.455 55.000 17.04 0.00 0.00 3.86
572 588 0.546598 AGGGCCCTCGAATAAACTGG 59.453 55.000 22.28 0.00 0.00 4.00
573 589 1.475213 GGAGGGCCCTCGAATAAACTG 60.475 57.143 39.47 0.00 43.59 3.16
574 590 0.837940 GGAGGGCCCTCGAATAAACT 59.162 55.000 39.47 9.35 43.59 2.66
575 591 0.544697 TGGAGGGCCCTCGAATAAAC 59.455 55.000 39.47 26.21 43.59 2.01
576 592 1.211949 CTTGGAGGGCCCTCGAATAAA 59.788 52.381 39.68 27.27 43.59 1.40
577 593 0.837272 CTTGGAGGGCCCTCGAATAA 59.163 55.000 39.68 29.53 43.59 1.40
578 594 1.696097 GCTTGGAGGGCCCTCGAATA 61.696 60.000 39.68 24.87 43.59 1.75
579 595 3.049080 GCTTGGAGGGCCCTCGAAT 62.049 63.158 39.68 15.25 43.59 3.34
580 596 3.717294 GCTTGGAGGGCCCTCGAA 61.717 66.667 37.84 37.84 43.59 3.71
582 598 4.479993 CTGCTTGGAGGGCCCTCG 62.480 72.222 39.47 28.74 43.59 4.63
583 599 1.931007 ATTCTGCTTGGAGGGCCCTC 61.931 60.000 39.86 39.86 42.04 4.30
584 600 1.513087 AATTCTGCTTGGAGGGCCCT 61.513 55.000 29.18 29.18 35.38 5.19
585 601 0.258774 TAATTCTGCTTGGAGGGCCC 59.741 55.000 16.46 16.46 0.00 5.80
586 602 1.751351 GTTAATTCTGCTTGGAGGGCC 59.249 52.381 0.00 0.00 0.00 5.80
587 603 2.446435 TGTTAATTCTGCTTGGAGGGC 58.554 47.619 0.00 0.00 0.00 5.19
588 604 4.276926 GCTATGTTAATTCTGCTTGGAGGG 59.723 45.833 0.00 0.00 0.00 4.30
589 605 4.883585 TGCTATGTTAATTCTGCTTGGAGG 59.116 41.667 0.00 0.00 0.00 4.30
590 606 6.441093 TTGCTATGTTAATTCTGCTTGGAG 57.559 37.500 0.00 0.00 0.00 3.86
591 607 5.163622 GCTTGCTATGTTAATTCTGCTTGGA 60.164 40.000 0.00 0.00 0.00 3.53
592 608 5.039333 GCTTGCTATGTTAATTCTGCTTGG 58.961 41.667 0.00 0.00 0.00 3.61
593 609 5.514204 GTGCTTGCTATGTTAATTCTGCTTG 59.486 40.000 0.00 0.00 0.00 4.01
594 610 5.644644 GTGCTTGCTATGTTAATTCTGCTT 58.355 37.500 0.00 0.00 0.00 3.91
595 611 4.201851 CGTGCTTGCTATGTTAATTCTGCT 60.202 41.667 0.00 0.00 0.00 4.24
596 612 4.031028 CGTGCTTGCTATGTTAATTCTGC 58.969 43.478 0.00 0.00 0.00 4.26
597 613 4.094887 ACCGTGCTTGCTATGTTAATTCTG 59.905 41.667 0.00 0.00 0.00 3.02
598 614 4.094887 CACCGTGCTTGCTATGTTAATTCT 59.905 41.667 0.00 0.00 0.00 2.40
599 615 4.094294 TCACCGTGCTTGCTATGTTAATTC 59.906 41.667 0.00 0.00 0.00 2.17
600 616 4.006989 TCACCGTGCTTGCTATGTTAATT 58.993 39.130 0.00 0.00 0.00 1.40
601 617 3.605634 TCACCGTGCTTGCTATGTTAAT 58.394 40.909 0.00 0.00 0.00 1.40
602 618 3.046968 TCACCGTGCTTGCTATGTTAA 57.953 42.857 0.00 0.00 0.00 2.01
603 619 2.753055 TCACCGTGCTTGCTATGTTA 57.247 45.000 0.00 0.00 0.00 2.41
604 620 1.806542 CTTCACCGTGCTTGCTATGTT 59.193 47.619 0.00 0.00 0.00 2.71
605 621 1.001974 TCTTCACCGTGCTTGCTATGT 59.998 47.619 0.00 0.00 0.00 2.29
606 622 1.725641 TCTTCACCGTGCTTGCTATG 58.274 50.000 0.00 0.00 0.00 2.23
607 623 2.472695 TTCTTCACCGTGCTTGCTAT 57.527 45.000 0.00 0.00 0.00 2.97
608 624 2.248280 TTTCTTCACCGTGCTTGCTA 57.752 45.000 0.00 0.00 0.00 3.49
609 625 1.388547 TTTTCTTCACCGTGCTTGCT 58.611 45.000 0.00 0.00 0.00 3.91
610 626 1.852280 GTTTTTCTTCACCGTGCTTGC 59.148 47.619 0.00 0.00 0.00 4.01
611 627 3.363178 GAGTTTTTCTTCACCGTGCTTG 58.637 45.455 0.00 0.00 0.00 4.01
612 628 2.357952 GGAGTTTTTCTTCACCGTGCTT 59.642 45.455 0.00 0.00 0.00 3.91
613 629 1.947456 GGAGTTTTTCTTCACCGTGCT 59.053 47.619 0.00 0.00 0.00 4.40
614 630 1.947456 AGGAGTTTTTCTTCACCGTGC 59.053 47.619 0.00 0.00 0.00 5.34
615 631 2.943033 ACAGGAGTTTTTCTTCACCGTG 59.057 45.455 0.00 0.00 0.00 4.94
616 632 3.203716 GACAGGAGTTTTTCTTCACCGT 58.796 45.455 0.00 0.00 0.00 4.83
617 633 2.221055 CGACAGGAGTTTTTCTTCACCG 59.779 50.000 0.00 0.00 0.00 4.94
618 634 2.548480 CCGACAGGAGTTTTTCTTCACC 59.452 50.000 0.00 0.00 41.02 4.02
619 635 2.031944 GCCGACAGGAGTTTTTCTTCAC 60.032 50.000 0.00 0.00 41.02 3.18
620 636 2.218603 GCCGACAGGAGTTTTTCTTCA 58.781 47.619 0.00 0.00 41.02 3.02
621 637 2.218603 TGCCGACAGGAGTTTTTCTTC 58.781 47.619 0.00 0.00 41.02 2.87
622 638 2.341846 TGCCGACAGGAGTTTTTCTT 57.658 45.000 0.00 0.00 41.02 2.52
623 639 2.154462 CATGCCGACAGGAGTTTTTCT 58.846 47.619 0.00 0.00 41.02 2.52
624 640 2.151202 TCATGCCGACAGGAGTTTTTC 58.849 47.619 0.00 0.00 41.02 2.29
625 641 2.270352 TCATGCCGACAGGAGTTTTT 57.730 45.000 0.00 0.00 41.02 1.94
626 642 2.359900 GATCATGCCGACAGGAGTTTT 58.640 47.619 0.00 0.00 40.45 2.43
627 643 1.407437 GGATCATGCCGACAGGAGTTT 60.407 52.381 0.00 0.00 40.45 2.66
628 644 0.179000 GGATCATGCCGACAGGAGTT 59.821 55.000 0.00 0.00 40.45 3.01
629 645 1.826024 GGATCATGCCGACAGGAGT 59.174 57.895 0.00 0.00 40.45 3.85
630 646 4.766970 GGATCATGCCGACAGGAG 57.233 61.111 0.00 0.00 40.45 3.69
639 655 1.977594 AAAACGACGGCGGATCATGC 61.978 55.000 18.49 0.00 43.17 4.06
640 656 0.446222 AAAAACGACGGCGGATCATG 59.554 50.000 18.49 0.00 43.17 3.07
641 657 0.725117 GAAAAACGACGGCGGATCAT 59.275 50.000 18.49 0.00 43.17 2.45
642 658 0.600518 TGAAAAACGACGGCGGATCA 60.601 50.000 18.49 10.92 43.17 2.92
643 659 0.094730 CTGAAAAACGACGGCGGATC 59.905 55.000 18.49 8.04 43.17 3.36
644 660 0.601841 ACTGAAAAACGACGGCGGAT 60.602 50.000 18.49 0.00 43.17 4.18
645 661 1.227321 ACTGAAAAACGACGGCGGA 60.227 52.632 18.49 0.00 43.17 5.54
646 662 1.083015 CACTGAAAAACGACGGCGG 60.083 57.895 18.49 0.00 43.17 6.13
647 663 1.721133 GCACTGAAAAACGACGGCG 60.721 57.895 10.39 10.39 44.79 6.46
648 664 0.040425 ATGCACTGAAAAACGACGGC 60.040 50.000 0.00 0.00 0.00 5.68
649 665 2.399396 AATGCACTGAAAAACGACGG 57.601 45.000 0.00 0.00 0.00 4.79
650 666 3.900116 CACTAATGCACTGAAAAACGACG 59.100 43.478 0.00 0.00 0.00 5.12
665 681 2.684881 CCACTAAGCCCAAGCACTAATG 59.315 50.000 0.00 0.00 43.56 1.90
666 682 2.945890 GCCACTAAGCCCAAGCACTAAT 60.946 50.000 0.00 0.00 43.56 1.73
667 683 1.613255 GCCACTAAGCCCAAGCACTAA 60.613 52.381 0.00 0.00 43.56 2.24
668 684 0.035439 GCCACTAAGCCCAAGCACTA 60.035 55.000 0.00 0.00 43.56 2.74
669 685 1.303643 GCCACTAAGCCCAAGCACT 60.304 57.895 0.00 0.00 43.56 4.40
670 686 0.895559 AAGCCACTAAGCCCAAGCAC 60.896 55.000 0.00 0.00 43.56 4.40
671 687 0.695924 TAAGCCACTAAGCCCAAGCA 59.304 50.000 0.00 0.00 43.56 3.91
672 688 1.095600 GTAAGCCACTAAGCCCAAGC 58.904 55.000 0.00 0.00 40.32 4.01
673 689 2.489938 TGTAAGCCACTAAGCCCAAG 57.510 50.000 0.00 0.00 0.00 3.61
674 690 2.679639 CGATGTAAGCCACTAAGCCCAA 60.680 50.000 0.00 0.00 0.00 4.12
675 691 1.134521 CGATGTAAGCCACTAAGCCCA 60.135 52.381 0.00 0.00 0.00 5.36
676 692 1.138266 TCGATGTAAGCCACTAAGCCC 59.862 52.381 0.00 0.00 0.00 5.19
677 693 2.596904 TCGATGTAAGCCACTAAGCC 57.403 50.000 0.00 0.00 0.00 4.35
678 694 6.787085 ATTAATCGATGTAAGCCACTAAGC 57.213 37.500 0.00 0.00 0.00 3.09
679 695 8.365399 TGAATTAATCGATGTAAGCCACTAAG 57.635 34.615 0.00 0.00 0.00 2.18
680 696 8.902540 ATGAATTAATCGATGTAAGCCACTAA 57.097 30.769 0.00 0.00 0.00 2.24
681 697 8.367911 AGATGAATTAATCGATGTAAGCCACTA 58.632 33.333 0.00 0.00 0.00 2.74
682 698 7.220030 AGATGAATTAATCGATGTAAGCCACT 58.780 34.615 0.00 0.00 0.00 4.00
683 699 7.426929 AGATGAATTAATCGATGTAAGCCAC 57.573 36.000 0.00 0.00 0.00 5.01
684 700 8.988934 GTTAGATGAATTAATCGATGTAAGCCA 58.011 33.333 0.00 3.54 0.00 4.75
685 701 9.209175 AGTTAGATGAATTAATCGATGTAAGCC 57.791 33.333 0.00 0.00 0.00 4.35
690 706 9.784531 ATCCAAGTTAGATGAATTAATCGATGT 57.215 29.630 0.00 0.00 0.00 3.06
706 722 9.860898 CCTGGAAAGAAAAATAATCCAAGTTAG 57.139 33.333 0.00 0.00 39.54 2.34
707 723 8.811994 CCCTGGAAAGAAAAATAATCCAAGTTA 58.188 33.333 0.00 0.00 39.54 2.24
708 724 7.292356 ACCCTGGAAAGAAAAATAATCCAAGTT 59.708 33.333 0.00 0.00 39.54 2.66
715 731 6.295859 GGCAAGACCCTGGAAAGAAAAATAAT 60.296 38.462 0.00 0.00 0.00 1.28
722 738 1.149101 AGGCAAGACCCTGGAAAGAA 58.851 50.000 0.00 0.00 40.58 2.52
730 746 2.558359 CAATCGAAAAAGGCAAGACCCT 59.442 45.455 0.00 0.00 40.58 4.34
739 755 2.695359 TCCGTCTCCAATCGAAAAAGG 58.305 47.619 0.00 0.00 0.00 3.11
741 757 6.995511 ATATTTCCGTCTCCAATCGAAAAA 57.004 33.333 0.00 0.00 0.00 1.94
743 759 5.694910 GCTATATTTCCGTCTCCAATCGAAA 59.305 40.000 0.00 0.00 0.00 3.46
746 762 4.810790 AGCTATATTTCCGTCTCCAATCG 58.189 43.478 0.00 0.00 0.00 3.34
748 764 4.757149 GCAAGCTATATTTCCGTCTCCAAT 59.243 41.667 0.00 0.00 0.00 3.16
752 768 4.372656 ACAGCAAGCTATATTTCCGTCTC 58.627 43.478 0.00 0.00 0.00 3.36
753 769 4.408182 ACAGCAAGCTATATTTCCGTCT 57.592 40.909 0.00 0.00 0.00 4.18
763 787 4.899502 ACTGACAGTAAACAGCAAGCTAT 58.100 39.130 6.24 0.00 37.61 2.97
767 791 6.857964 CCAATAAACTGACAGTAAACAGCAAG 59.142 38.462 8.91 0.00 37.61 4.01
768 792 6.544197 TCCAATAAACTGACAGTAAACAGCAA 59.456 34.615 8.91 0.00 37.61 3.91
769 793 6.017440 GTCCAATAAACTGACAGTAAACAGCA 60.017 38.462 8.91 0.00 37.61 4.41
770 794 6.371389 GTCCAATAAACTGACAGTAAACAGC 58.629 40.000 8.91 0.00 37.61 4.40
782 806 1.379527 GGAGGCCGTCCAATAAACTG 58.620 55.000 14.36 0.00 46.10 3.16
793 817 1.078143 GATTCTGCTTGGAGGCCGT 60.078 57.895 0.00 0.00 0.00 5.68
794 818 2.176273 CGATTCTGCTTGGAGGCCG 61.176 63.158 0.00 0.00 0.00 6.13
803 827 1.914634 CTTGCTACGTCGATTCTGCT 58.085 50.000 0.00 0.00 0.00 4.24
805 829 1.914634 AGCTTGCTACGTCGATTCTG 58.085 50.000 0.00 0.00 0.00 3.02
806 830 2.263077 CAAGCTTGCTACGTCGATTCT 58.737 47.619 14.65 0.00 0.00 2.40
807 831 1.324736 CCAAGCTTGCTACGTCGATTC 59.675 52.381 21.43 0.00 0.00 2.52
808 832 1.337823 ACCAAGCTTGCTACGTCGATT 60.338 47.619 21.43 0.00 0.00 3.34
809 833 0.246635 ACCAAGCTTGCTACGTCGAT 59.753 50.000 21.43 0.00 0.00 3.59
810 834 0.666274 CACCAAGCTTGCTACGTCGA 60.666 55.000 21.43 0.00 0.00 4.20
811 835 0.666274 TCACCAAGCTTGCTACGTCG 60.666 55.000 21.43 7.95 0.00 5.12
812 836 1.461127 CTTCACCAAGCTTGCTACGTC 59.539 52.381 21.43 0.00 0.00 4.34
813 837 1.070134 TCTTCACCAAGCTTGCTACGT 59.930 47.619 21.43 10.49 0.00 3.57
814 838 1.795768 TCTTCACCAAGCTTGCTACG 58.204 50.000 21.43 9.81 0.00 3.51
815 839 4.568152 TTTTCTTCACCAAGCTTGCTAC 57.432 40.909 21.43 0.00 0.00 3.58
816 840 5.789643 ATTTTTCTTCACCAAGCTTGCTA 57.210 34.783 21.43 5.25 0.00 3.49
817 841 4.677673 ATTTTTCTTCACCAAGCTTGCT 57.322 36.364 21.43 4.40 0.00 3.91
818 842 4.212004 GGAATTTTTCTTCACCAAGCTTGC 59.788 41.667 21.43 1.78 0.00 4.01
819 843 4.445385 CGGAATTTTTCTTCACCAAGCTTG 59.555 41.667 19.93 19.93 0.00 4.01
820 844 4.501400 CCGGAATTTTTCTTCACCAAGCTT 60.501 41.667 0.00 0.00 0.00 3.74
821 845 3.005791 CCGGAATTTTTCTTCACCAAGCT 59.994 43.478 0.00 0.00 0.00 3.74
822 846 3.243737 ACCGGAATTTTTCTTCACCAAGC 60.244 43.478 9.46 0.00 0.00 4.01
823 847 4.546570 GACCGGAATTTTTCTTCACCAAG 58.453 43.478 9.46 0.00 0.00 3.61
824 848 3.003897 CGACCGGAATTTTTCTTCACCAA 59.996 43.478 9.46 0.00 0.00 3.67
825 849 2.550606 CGACCGGAATTTTTCTTCACCA 59.449 45.455 9.46 0.00 0.00 4.17
826 850 2.095415 CCGACCGGAATTTTTCTTCACC 60.095 50.000 9.46 0.00 37.50 4.02
827 851 2.551032 ACCGACCGGAATTTTTCTTCAC 59.449 45.455 16.07 0.00 38.96 3.18
828 852 2.853705 ACCGACCGGAATTTTTCTTCA 58.146 42.857 16.07 0.00 38.96 3.02
829 853 4.632688 TCATACCGACCGGAATTTTTCTTC 59.367 41.667 16.07 0.00 38.96 2.87
830 854 4.581868 TCATACCGACCGGAATTTTTCTT 58.418 39.130 16.07 0.00 38.96 2.52
831 855 4.210724 TCATACCGACCGGAATTTTTCT 57.789 40.909 16.07 0.00 38.96 2.52
832 856 4.024302 GGATCATACCGACCGGAATTTTTC 60.024 45.833 16.07 0.00 38.96 2.29
833 857 3.881089 GGATCATACCGACCGGAATTTTT 59.119 43.478 16.07 0.00 38.96 1.94
834 858 3.473625 GGATCATACCGACCGGAATTTT 58.526 45.455 16.07 0.00 38.96 1.82
835 859 3.121738 GGATCATACCGACCGGAATTT 57.878 47.619 16.07 0.00 38.96 1.82
836 860 2.833631 GGATCATACCGACCGGAATT 57.166 50.000 16.07 0.00 38.96 2.17
846 870 0.034896 AATCACCGGCGGATCATACC 59.965 55.000 35.78 0.00 0.00 2.73
847 871 1.878953 AAATCACCGGCGGATCATAC 58.121 50.000 35.78 0.00 0.00 2.39
848 872 2.631160 AAAATCACCGGCGGATCATA 57.369 45.000 35.78 12.82 0.00 2.15
849 873 1.762708 AAAAATCACCGGCGGATCAT 58.237 45.000 35.78 17.67 0.00 2.45
850 874 2.285083 CTAAAAATCACCGGCGGATCA 58.715 47.619 35.78 16.01 0.00 2.92
851 875 1.002792 GCTAAAAATCACCGGCGGATC 60.003 52.381 35.78 0.00 0.00 3.36
852 876 1.021968 GCTAAAAATCACCGGCGGAT 58.978 50.000 35.78 14.51 0.00 4.18
853 877 0.035820 AGCTAAAAATCACCGGCGGA 60.036 50.000 35.78 12.34 0.00 5.54
854 878 0.808755 AAGCTAAAAATCACCGGCGG 59.191 50.000 27.06 27.06 0.00 6.13
855 879 2.629639 AAAGCTAAAAATCACCGGCG 57.370 45.000 0.00 0.00 0.00 6.46
856 880 4.303282 TGAAAAAGCTAAAAATCACCGGC 58.697 39.130 0.00 0.00 0.00 6.13
857 881 5.402270 CACTGAAAAAGCTAAAAATCACCGG 59.598 40.000 0.00 0.00 0.00 5.28
858 882 5.107875 GCACTGAAAAAGCTAAAAATCACCG 60.108 40.000 0.00 0.00 0.00 4.94
859 883 5.752955 TGCACTGAAAAAGCTAAAAATCACC 59.247 36.000 0.00 0.00 0.00 4.02
860 884 6.826893 TGCACTGAAAAAGCTAAAAATCAC 57.173 33.333 0.00 0.00 0.00 3.06
861 885 9.195411 CTAATGCACTGAAAAAGCTAAAAATCA 57.805 29.630 0.00 0.00 0.00 2.57
867 891 5.564651 GCCACTAATGCACTGAAAAAGCTAA 60.565 40.000 0.00 0.00 0.00 3.09
887 911 4.792804 GCCTCTGAGCCCAGCCAC 62.793 72.222 0.00 0.00 40.20 5.01
889 913 4.173924 GAGCCTCTGAGCCCAGCC 62.174 72.222 0.00 0.00 40.20 4.85
891 915 1.624479 ATGTGAGCCTCTGAGCCCAG 61.624 60.000 0.00 0.00 41.74 4.45
892 916 1.203441 AATGTGAGCCTCTGAGCCCA 61.203 55.000 0.00 0.00 0.00 5.36
893 917 0.833287 TAATGTGAGCCTCTGAGCCC 59.167 55.000 0.00 0.00 0.00 5.19
894 918 1.759445 TCTAATGTGAGCCTCTGAGCC 59.241 52.381 0.00 0.00 0.00 4.70
895 919 3.749665 ATCTAATGTGAGCCTCTGAGC 57.250 47.619 0.00 0.00 0.00 4.26
896 920 6.873076 GGATTAATCTAATGTGAGCCTCTGAG 59.127 42.308 14.95 0.00 0.00 3.35
897 921 6.327365 TGGATTAATCTAATGTGAGCCTCTGA 59.673 38.462 14.95 0.00 0.00 3.27
898 922 6.528321 TGGATTAATCTAATGTGAGCCTCTG 58.472 40.000 14.95 0.00 0.00 3.35
899 923 6.753913 TGGATTAATCTAATGTGAGCCTCT 57.246 37.500 14.95 0.00 0.00 3.69
900 924 7.393216 AGATGGATTAATCTAATGTGAGCCTC 58.607 38.462 14.95 1.01 35.09 4.70
901 925 7.327064 AGATGGATTAATCTAATGTGAGCCT 57.673 36.000 14.95 0.60 35.09 4.58
902 926 7.992754 AAGATGGATTAATCTAATGTGAGCC 57.007 36.000 14.95 0.00 35.83 4.70
909 933 9.372189 CCCTGGAAAAAGATGGATTAATCTAAT 57.628 33.333 14.95 9.21 35.83 1.73
910 934 8.343787 ACCCTGGAAAAAGATGGATTAATCTAA 58.656 33.333 14.95 4.81 35.83 2.10
921 947 5.534654 TCAGTTTACACCCTGGAAAAAGATG 59.465 40.000 0.00 0.00 30.94 2.90
940 966 2.093973 CACTAGGGATGCGTCTTCAGTT 60.094 50.000 5.77 0.00 0.00 3.16
941 967 1.478510 CACTAGGGATGCGTCTTCAGT 59.521 52.381 5.77 3.71 0.00 3.41
942 968 1.478510 ACACTAGGGATGCGTCTTCAG 59.521 52.381 0.00 3.10 0.00 3.02
943 969 1.557099 ACACTAGGGATGCGTCTTCA 58.443 50.000 0.00 0.00 0.00 3.02
944 970 2.688958 AGTACACTAGGGATGCGTCTTC 59.311 50.000 0.00 0.00 0.00 2.87
945 971 2.427453 CAGTACACTAGGGATGCGTCTT 59.573 50.000 0.00 0.00 0.00 3.01
946 972 2.025155 CAGTACACTAGGGATGCGTCT 58.975 52.381 0.00 0.00 0.00 4.18
947 973 1.749634 ACAGTACACTAGGGATGCGTC 59.250 52.381 0.00 0.00 0.00 5.19
948 974 1.749634 GACAGTACACTAGGGATGCGT 59.250 52.381 0.00 0.00 0.00 5.24
949 975 1.749063 TGACAGTACACTAGGGATGCG 59.251 52.381 0.00 0.00 0.00 4.73
950 976 2.761208 ACTGACAGTACACTAGGGATGC 59.239 50.000 6.24 0.00 0.00 3.91
951 977 3.429547 GCACTGACAGTACACTAGGGATG 60.430 52.174 8.02 0.00 0.00 3.51
952 978 2.761208 GCACTGACAGTACACTAGGGAT 59.239 50.000 8.02 0.00 0.00 3.85
953 979 2.168496 GCACTGACAGTACACTAGGGA 58.832 52.381 8.02 0.00 0.00 4.20
954 980 1.893137 TGCACTGACAGTACACTAGGG 59.107 52.381 8.02 0.00 0.00 3.53
955 981 3.876274 ATGCACTGACAGTACACTAGG 57.124 47.619 10.73 0.00 0.00 3.02
956 982 4.742167 GCATATGCACTGACAGTACACTAG 59.258 45.833 22.84 5.04 41.59 2.57
957 983 4.682787 GCATATGCACTGACAGTACACTA 58.317 43.478 22.84 5.75 41.59 2.74
958 984 3.525537 GCATATGCACTGACAGTACACT 58.474 45.455 22.84 3.86 41.59 3.55
959 985 3.933155 GCATATGCACTGACAGTACAC 57.067 47.619 22.84 3.35 41.59 2.90
976 1002 2.163815 GCAAGCTCTGTCAATTCTGCAT 59.836 45.455 0.00 0.00 0.00 3.96
977 1003 1.538512 GCAAGCTCTGTCAATTCTGCA 59.461 47.619 0.00 0.00 0.00 4.41
984 1027 2.294233 GACCATTTGCAAGCTCTGTCAA 59.706 45.455 0.00 0.00 0.00 3.18
1067 1110 1.816224 ACTCTTCAGCGAGGAGAGTTC 59.184 52.381 19.13 0.00 37.89 3.01
1074 1117 0.179124 GCCTGTACTCTTCAGCGAGG 60.179 60.000 0.00 0.00 35.33 4.63
1079 1122 1.272490 TGAACCGCCTGTACTCTTCAG 59.728 52.381 0.00 0.00 0.00 3.02
1083 1126 0.608640 CCTTGAACCGCCTGTACTCT 59.391 55.000 0.00 0.00 0.00 3.24
1091 1134 3.670377 GCACACCCTTGAACCGCC 61.670 66.667 0.00 0.00 0.00 6.13
1244 1287 0.179111 GAAGTCGTCGATGGCATCCA 60.179 55.000 21.20 6.26 38.19 3.41
1323 1366 3.246461 ACTTCCCCAATTTCCCCAATGAT 60.246 43.478 0.00 0.00 0.00 2.45
1364 1407 4.282957 TCAGATCTTGGATATCTCTGCCAC 59.717 45.833 12.04 0.00 34.66 5.01
1502 1545 3.761897 TCGATTCCCACCAATTTTGAGT 58.238 40.909 0.00 0.00 0.00 3.41
1535 1578 8.675705 TTGAGTCAACAGTTTGATTATCTCAA 57.324 30.769 0.08 11.29 42.76 3.02
1590 1648 6.542821 TCCAACAATTGAGACTACCTTCAAT 58.457 36.000 13.59 0.00 34.68 2.57
1591 1649 5.935945 TCCAACAATTGAGACTACCTTCAA 58.064 37.500 13.59 0.00 0.00 2.69
1592 1650 5.560722 TCCAACAATTGAGACTACCTTCA 57.439 39.130 13.59 0.00 0.00 3.02
1827 1885 0.796312 ATAGCACGCACCTTTTGTCG 59.204 50.000 0.00 0.00 0.00 4.35
1898 1963 6.798427 ACACATTCCACTAGTACAGATGAT 57.202 37.500 0.00 0.00 0.00 2.45
1903 1993 7.226720 ACTTTTCAACACATTCCACTAGTACAG 59.773 37.037 0.00 0.00 0.00 2.74
1918 2008 6.959671 TGTTTTCATGGAACTTTTCAACAC 57.040 33.333 12.13 0.00 0.00 3.32
1954 2044 8.593679 ACCTTTTCTTTTTACATATGGGGAAAG 58.406 33.333 7.80 12.63 0.00 2.62
1970 2060 7.418337 AACATTTGACCACTACCTTTTCTTT 57.582 32.000 0.00 0.00 0.00 2.52
1971 2061 7.093509 ACAAACATTTGACCACTACCTTTTCTT 60.094 33.333 11.24 0.00 40.55 2.52
1978 2068 9.620660 CTTTATTACAAACATTTGACCACTACC 57.379 33.333 11.24 0.00 40.55 3.18
2006 2099 9.796120 TTTCTTTTGTTTAGAAAATCGACATGT 57.204 25.926 0.00 0.00 38.35 3.21
2045 2139 7.123383 TCCTAGGACATGTTATTCTCTGTACA 58.877 38.462 7.62 0.00 0.00 2.90
2051 2145 4.591072 AGGCTCCTAGGACATGTTATTCTC 59.409 45.833 7.62 0.00 0.00 2.87
2056 2150 3.199946 CCAAAGGCTCCTAGGACATGTTA 59.800 47.826 7.62 0.00 0.00 2.41
2135 2246 9.936329 AAACCATATATAAGTCAACAAAGGGAT 57.064 29.630 0.00 0.00 0.00 3.85
2159 2272 9.733556 AAACATTATAGGTCACACATAGTCAAA 57.266 29.630 0.00 0.00 0.00 2.69
2206 2410 4.892345 TCATCAAAATCACTGTCCAAACCA 59.108 37.500 0.00 0.00 0.00 3.67
2267 2471 3.520569 CCTTTGTGTGAAAACAAGGGTG 58.479 45.455 9.39 0.00 46.74 4.61
2273 2477 1.134848 GGCAGCCTTTGTGTGAAAACA 60.135 47.619 3.29 0.00 0.00 2.83
2274 2478 1.134848 TGGCAGCCTTTGTGTGAAAAC 60.135 47.619 14.15 0.00 0.00 2.43
2275 2479 1.134848 GTGGCAGCCTTTGTGTGAAAA 60.135 47.619 14.15 0.00 0.00 2.29
2276 2480 0.459489 GTGGCAGCCTTTGTGTGAAA 59.541 50.000 14.15 0.00 0.00 2.69
2277 2481 0.682532 TGTGGCAGCCTTTGTGTGAA 60.683 50.000 14.15 0.00 0.00 3.18
2278 2482 1.077140 TGTGGCAGCCTTTGTGTGA 60.077 52.632 14.15 0.00 0.00 3.58
2279 2483 1.066257 GTGTGGCAGCCTTTGTGTG 59.934 57.895 14.15 0.00 0.00 3.82
2280 2484 1.379710 TGTGTGGCAGCCTTTGTGT 60.380 52.632 14.15 0.00 0.00 3.72
2281 2485 1.066257 GTGTGTGGCAGCCTTTGTG 59.934 57.895 14.15 0.00 0.00 3.33
2303 2507 5.178067 GTGAATGGAGGTGCAAAAAGAATTG 59.822 40.000 0.00 0.00 0.00 2.32
2304 2508 5.070847 AGTGAATGGAGGTGCAAAAAGAATT 59.929 36.000 0.00 0.00 0.00 2.17
2305 2509 4.590222 AGTGAATGGAGGTGCAAAAAGAAT 59.410 37.500 0.00 0.00 0.00 2.40
2331 2589 0.547075 TGGTACGAGAGAGGAGAGGG 59.453 60.000 0.00 0.00 0.00 4.30
2360 2618 3.539604 GTCTCAATAGAGCATTGCACCT 58.460 45.455 11.91 9.80 43.28 4.00
2511 2777 2.033299 CAGCTGGCTGTCTTTTCGAAAA 59.967 45.455 21.35 21.35 39.10 2.29
2512 2778 1.603802 CAGCTGGCTGTCTTTTCGAAA 59.396 47.619 6.47 6.47 39.10 3.46
2513 2779 1.229428 CAGCTGGCTGTCTTTTCGAA 58.771 50.000 13.76 0.00 39.10 3.71
2514 2780 1.230635 GCAGCTGGCTGTCTTTTCGA 61.231 55.000 21.34 0.00 45.24 3.71
2515 2781 1.208614 GCAGCTGGCTGTCTTTTCG 59.791 57.895 21.34 0.00 45.24 3.46
2540 2806 3.515502 ACCTTCTCCGTCTTCATCAATGA 59.484 43.478 0.00 0.00 34.44 2.57
2595 2861 0.319813 GGGCCAATTGTGACTGTTGC 60.320 55.000 4.39 0.00 0.00 4.17
2599 2865 0.314935 GTGTGGGCCAATTGTGACTG 59.685 55.000 8.40 0.00 0.00 3.51
2601 2867 0.314935 CTGTGTGGGCCAATTGTGAC 59.685 55.000 8.40 0.00 0.00 3.67
2604 2870 3.458653 GCTGTGTGGGCCAATTGT 58.541 55.556 8.40 0.00 0.00 2.71
2667 2971 7.581213 TCCAGTGATACAAAATGAAAACAGT 57.419 32.000 0.00 0.00 0.00 3.55
2699 3003 2.508526 AGCAAGAATCTTGGTGTGGAC 58.491 47.619 24.61 6.65 0.00 4.02
2724 3386 1.412710 GCCGATCAGGTGGTCATAAGA 59.587 52.381 0.00 0.00 43.70 2.10
2814 3477 6.204359 CACAGAAAAGATCAAAACTGGACAG 58.796 40.000 0.00 0.00 0.00 3.51
2841 3504 7.719778 AGAAATTTTTGAAACAAGAGGCATC 57.280 32.000 0.00 0.00 0.00 3.91
2855 3518 7.018635 ACAAGTGGCATGAAAGAAATTTTTG 57.981 32.000 0.00 0.00 0.00 2.44
2863 3526 6.214191 TGTTTAAACAAGTGGCATGAAAGA 57.786 33.333 18.54 0.00 35.67 2.52
3126 3794 7.571244 GCACACTTAATAATATCCCATGTGTCG 60.571 40.741 0.00 0.00 37.74 4.35
3192 3860 3.585862 AGCGACATTGTTCATACGAGTT 58.414 40.909 0.00 0.00 0.00 3.01
3233 3901 8.730680 GCCTTATATTGTAAATATGACCACTGG 58.269 37.037 0.00 0.00 0.00 4.00
3488 4156 3.165058 TCTTCATCATTCCTTCGACGG 57.835 47.619 0.45 0.45 0.00 4.79
3644 4324 6.051074 TCATATGTTGTGTATCTGCCTTCTG 58.949 40.000 1.90 0.00 0.00 3.02
3669 4349 7.394359 AGCTCATTAAAGCACATTTCTCCTAAA 59.606 33.333 2.15 0.00 45.00 1.85
4182 4911 8.985805 CCAAGATTAATAATAGACGTGGGTAAC 58.014 37.037 0.00 0.00 0.00 2.50
4410 5166 4.570930 GGGAGTAGAAAAACCTGTCTCTG 58.429 47.826 0.00 0.00 0.00 3.35
4513 5270 7.186021 ACTTTTACCTGTTCTACAAATCACG 57.814 36.000 0.00 0.00 0.00 4.35
4547 5304 3.127030 GGTGAGCAGGTTACTGTTTATGC 59.873 47.826 0.00 0.00 46.62 3.14
4725 5498 1.286553 GAGAGAGGGGGTCAGAGAGAA 59.713 57.143 0.00 0.00 0.00 2.87
4894 5682 5.044919 TGAGAAATAGCAGAAAATGGGGAGA 60.045 40.000 0.00 0.00 0.00 3.71
4897 5686 4.706476 TGTGAGAAATAGCAGAAAATGGGG 59.294 41.667 0.00 0.00 0.00 4.96
4901 5690 4.400567 GGGCTGTGAGAAATAGCAGAAAAT 59.599 41.667 0.00 0.00 44.46 1.82
4902 5691 3.758554 GGGCTGTGAGAAATAGCAGAAAA 59.241 43.478 0.00 0.00 44.46 2.29
4986 5776 3.548587 CATGTGAGCTGTTTTCAACTCG 58.451 45.455 0.00 0.00 43.58 4.18
5223 6015 4.100035 CACTCCTCTTCAGCCACATATGTA 59.900 45.833 8.32 0.00 0.00 2.29
5225 6017 3.464907 CACTCCTCTTCAGCCACATATG 58.535 50.000 0.00 0.00 0.00 1.78
5226 6018 2.158842 GCACTCCTCTTCAGCCACATAT 60.159 50.000 0.00 0.00 0.00 1.78
5227 6019 1.208052 GCACTCCTCTTCAGCCACATA 59.792 52.381 0.00 0.00 0.00 2.29
5228 6020 0.035630 GCACTCCTCTTCAGCCACAT 60.036 55.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.