Multiple sequence alignment - TraesCS6B01G463400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G463400 chr6B 100.000 1740 0 0 810 2549 715772025 715770286 0.000000e+00 3214
1 TraesCS6B01G463400 chr6B 87.276 1226 133 12 1005 2222 715861967 715860757 0.000000e+00 1378
2 TraesCS6B01G463400 chr6B 100.000 632 0 0 1 632 715772834 715772203 0.000000e+00 1168
3 TraesCS6B01G463400 chr6B 82.268 970 160 10 1006 1969 717627858 717626895 0.000000e+00 828
4 TraesCS6B01G463400 chr6B 85.009 567 50 14 1980 2525 716108790 716108238 6.200000e-151 544
5 TraesCS6B01G463400 chr6B 74.797 492 74 27 2075 2549 715814454 715813996 2.610000e-40 176
6 TraesCS6B01G463400 chrUn 87.877 1691 170 18 872 2541 291937793 291936117 0.000000e+00 1954
7 TraesCS6B01G463400 chrUn 87.877 1691 170 18 872 2541 328964910 328963234 0.000000e+00 1954
8 TraesCS6B01G463400 chrUn 89.115 1571 150 11 986 2538 331544470 331546037 0.000000e+00 1934
9 TraesCS6B01G463400 chrUn 85.385 999 138 7 986 1980 62146633 62147627 0.000000e+00 1029
10 TraesCS6B01G463400 chrUn 82.919 925 146 10 1051 1969 342198608 342197690 0.000000e+00 822
11 TraesCS6B01G463400 chrUn 82.005 439 47 16 2112 2525 62147863 62148294 6.750000e-91 344
12 TraesCS6B01G463400 chr6D 86.567 1206 149 7 1006 2203 469916371 469917571 0.000000e+00 1317
13 TraesCS6B01G463400 chr6D 80.928 194 29 4 1980 2167 469811949 469811758 2.040000e-31 147
14 TraesCS6B01G463400 chr6A 86.804 1114 124 15 872 1970 614678520 614677415 0.000000e+00 1221
15 TraesCS6B01G463400 chr6A 84.000 200 24 6 1980 2175 614794035 614793840 4.330000e-43 185
16 TraesCS6B01G463400 chr6A 83.969 131 18 3 2351 2479 614793663 614793534 3.440000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G463400 chr6B 715770286 715772834 2548 True 2191.0 3214 100.000 1 2549 2 chr6B.!!$R5 2548
1 TraesCS6B01G463400 chr6B 715860757 715861967 1210 True 1378.0 1378 87.276 1005 2222 1 chr6B.!!$R2 1217
2 TraesCS6B01G463400 chr6B 717626895 717627858 963 True 828.0 828 82.268 1006 1969 1 chr6B.!!$R4 963
3 TraesCS6B01G463400 chr6B 716108238 716108790 552 True 544.0 544 85.009 1980 2525 1 chr6B.!!$R3 545
4 TraesCS6B01G463400 chrUn 291936117 291937793 1676 True 1954.0 1954 87.877 872 2541 1 chrUn.!!$R1 1669
5 TraesCS6B01G463400 chrUn 328963234 328964910 1676 True 1954.0 1954 87.877 872 2541 1 chrUn.!!$R2 1669
6 TraesCS6B01G463400 chrUn 331544470 331546037 1567 False 1934.0 1934 89.115 986 2538 1 chrUn.!!$F1 1552
7 TraesCS6B01G463400 chrUn 342197690 342198608 918 True 822.0 822 82.919 1051 1969 1 chrUn.!!$R3 918
8 TraesCS6B01G463400 chrUn 62146633 62148294 1661 False 686.5 1029 83.695 986 2525 2 chrUn.!!$F2 1539
9 TraesCS6B01G463400 chr6D 469916371 469917571 1200 False 1317.0 1317 86.567 1006 2203 1 chr6D.!!$F1 1197
10 TraesCS6B01G463400 chr6A 614677415 614678520 1105 True 1221.0 1221 86.804 872 1970 1 chr6A.!!$R1 1098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.03467 GCCTGACATGCCTTCTCCTT 60.035 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 1787 0.245813 GTACTCCCCACTTCCGTGTC 59.754 60.0 0.0 0.0 39.55 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.679734 ACTGTACTGTCATTGCTTCTTTG 57.320 39.130 0.00 0.00 0.00 2.77
24 25 4.023707 ACTGTACTGTCATTGCTTCTTTGC 60.024 41.667 0.00 0.00 0.00 3.68
25 26 3.253188 TGTACTGTCATTGCTTCTTTGCC 59.747 43.478 0.00 0.00 0.00 4.52
26 27 2.590821 ACTGTCATTGCTTCTTTGCCT 58.409 42.857 0.00 0.00 0.00 4.75
27 28 2.295349 ACTGTCATTGCTTCTTTGCCTG 59.705 45.455 0.00 0.00 0.00 4.85
28 29 2.555325 CTGTCATTGCTTCTTTGCCTGA 59.445 45.455 0.00 0.00 0.00 3.86
29 30 2.294233 TGTCATTGCTTCTTTGCCTGAC 59.706 45.455 0.00 0.00 41.17 3.51
30 31 2.294233 GTCATTGCTTCTTTGCCTGACA 59.706 45.455 11.63 0.00 40.82 3.58
31 32 3.057033 GTCATTGCTTCTTTGCCTGACAT 60.057 43.478 11.63 0.00 40.82 3.06
32 33 3.057104 TCATTGCTTCTTTGCCTGACATG 60.057 43.478 0.00 0.00 0.00 3.21
33 34 0.599558 TGCTTCTTTGCCTGACATGC 59.400 50.000 0.00 0.00 0.00 4.06
34 35 0.108945 GCTTCTTTGCCTGACATGCC 60.109 55.000 0.00 0.00 0.00 4.40
35 36 1.542492 CTTCTTTGCCTGACATGCCT 58.458 50.000 0.00 0.00 0.00 4.75
36 37 1.891150 CTTCTTTGCCTGACATGCCTT 59.109 47.619 0.00 0.00 0.00 4.35
37 38 1.538047 TCTTTGCCTGACATGCCTTC 58.462 50.000 0.00 0.00 0.00 3.46
38 39 1.074405 TCTTTGCCTGACATGCCTTCT 59.926 47.619 0.00 0.00 0.00 2.85
39 40 1.471684 CTTTGCCTGACATGCCTTCTC 59.528 52.381 0.00 0.00 0.00 2.87
40 41 0.322816 TTGCCTGACATGCCTTCTCC 60.323 55.000 0.00 0.00 0.00 3.71
41 42 1.203441 TGCCTGACATGCCTTCTCCT 61.203 55.000 0.00 0.00 0.00 3.69
42 43 0.034670 GCCTGACATGCCTTCTCCTT 60.035 55.000 0.00 0.00 0.00 3.36
43 44 1.210478 GCCTGACATGCCTTCTCCTTA 59.790 52.381 0.00 0.00 0.00 2.69
44 45 2.356125 GCCTGACATGCCTTCTCCTTAA 60.356 50.000 0.00 0.00 0.00 1.85
45 46 3.873801 GCCTGACATGCCTTCTCCTTAAA 60.874 47.826 0.00 0.00 0.00 1.52
46 47 4.335416 CCTGACATGCCTTCTCCTTAAAA 58.665 43.478 0.00 0.00 0.00 1.52
47 48 4.766891 CCTGACATGCCTTCTCCTTAAAAA 59.233 41.667 0.00 0.00 0.00 1.94
82 83 6.902224 AAAAAGATGAACGAAAAACCCTTG 57.098 33.333 0.00 0.00 0.00 3.61
83 84 5.845391 AAAGATGAACGAAAAACCCTTGA 57.155 34.783 0.00 0.00 0.00 3.02
84 85 5.438761 AAGATGAACGAAAAACCCTTGAG 57.561 39.130 0.00 0.00 0.00 3.02
85 86 3.821033 AGATGAACGAAAAACCCTTGAGG 59.179 43.478 0.00 0.00 43.78 3.86
86 87 3.284793 TGAACGAAAAACCCTTGAGGA 57.715 42.857 0.00 0.00 39.89 3.71
87 88 3.622630 TGAACGAAAAACCCTTGAGGAA 58.377 40.909 0.00 0.00 39.89 3.36
88 89 4.211920 TGAACGAAAAACCCTTGAGGAAT 58.788 39.130 0.00 0.00 39.89 3.01
89 90 4.037446 TGAACGAAAAACCCTTGAGGAATG 59.963 41.667 0.00 0.00 39.89 2.67
90 91 3.827722 ACGAAAAACCCTTGAGGAATGA 58.172 40.909 0.00 0.00 39.89 2.57
91 92 4.211920 ACGAAAAACCCTTGAGGAATGAA 58.788 39.130 0.00 0.00 39.89 2.57
92 93 4.278419 ACGAAAAACCCTTGAGGAATGAAG 59.722 41.667 0.00 0.00 39.89 3.02
93 94 4.278419 CGAAAAACCCTTGAGGAATGAAGT 59.722 41.667 0.00 0.00 39.89 3.01
94 95 5.562890 CGAAAAACCCTTGAGGAATGAAGTC 60.563 44.000 0.00 0.00 39.89 3.01
95 96 4.453480 AAACCCTTGAGGAATGAAGTCA 57.547 40.909 0.00 0.00 39.89 3.41
96 97 4.664688 AACCCTTGAGGAATGAAGTCAT 57.335 40.909 0.00 0.00 39.89 3.06
97 98 4.227864 ACCCTTGAGGAATGAAGTCATC 57.772 45.455 0.00 0.00 39.89 2.92
98 99 3.848975 ACCCTTGAGGAATGAAGTCATCT 59.151 43.478 0.00 0.00 39.89 2.90
99 100 4.197750 CCCTTGAGGAATGAAGTCATCTG 58.802 47.826 0.00 0.00 38.24 2.90
100 101 4.324099 CCCTTGAGGAATGAAGTCATCTGT 60.324 45.833 0.00 0.00 38.24 3.41
101 102 5.104776 CCCTTGAGGAATGAAGTCATCTGTA 60.105 44.000 0.00 0.00 38.24 2.74
102 103 5.814705 CCTTGAGGAATGAAGTCATCTGTAC 59.185 44.000 0.00 0.00 35.10 2.90
103 104 6.351711 CCTTGAGGAATGAAGTCATCTGTACT 60.352 42.308 0.00 0.00 35.10 2.73
104 105 5.970592 TGAGGAATGAAGTCATCTGTACTG 58.029 41.667 0.00 0.00 35.10 2.74
105 106 5.481824 TGAGGAATGAAGTCATCTGTACTGT 59.518 40.000 0.00 0.00 35.10 3.55
106 107 6.014242 TGAGGAATGAAGTCATCTGTACTGTT 60.014 38.462 0.00 0.00 35.10 3.16
107 108 7.178451 TGAGGAATGAAGTCATCTGTACTGTTA 59.822 37.037 0.00 0.00 35.10 2.41
108 109 7.907389 AGGAATGAAGTCATCTGTACTGTTAA 58.093 34.615 0.00 0.00 35.10 2.01
109 110 8.375506 AGGAATGAAGTCATCTGTACTGTTAAA 58.624 33.333 0.00 0.00 35.10 1.52
110 111 8.999431 GGAATGAAGTCATCTGTACTGTTAAAA 58.001 33.333 0.00 0.00 35.10 1.52
135 136 7.516198 AAGAAAAATTCTTCAGCAAGCTAGA 57.484 32.000 0.00 0.00 46.62 2.43
136 137 6.907741 AGAAAAATTCTTCAGCAAGCTAGAC 58.092 36.000 0.00 0.00 36.36 2.59
137 138 6.488006 AGAAAAATTCTTCAGCAAGCTAGACA 59.512 34.615 0.00 0.00 36.36 3.41
138 139 6.830873 AAAATTCTTCAGCAAGCTAGACAT 57.169 33.333 0.00 0.00 0.00 3.06
139 140 6.434018 AAATTCTTCAGCAAGCTAGACATC 57.566 37.500 0.00 0.00 0.00 3.06
140 141 4.541973 TTCTTCAGCAAGCTAGACATCA 57.458 40.909 0.00 0.00 0.00 3.07
141 142 4.541973 TCTTCAGCAAGCTAGACATCAA 57.458 40.909 0.00 0.00 0.00 2.57
142 143 4.502016 TCTTCAGCAAGCTAGACATCAAG 58.498 43.478 0.00 0.00 0.00 3.02
143 144 3.257469 TCAGCAAGCTAGACATCAAGG 57.743 47.619 0.00 0.00 0.00 3.61
144 145 2.833943 TCAGCAAGCTAGACATCAAGGA 59.166 45.455 0.00 0.00 0.00 3.36
145 146 3.453717 TCAGCAAGCTAGACATCAAGGAT 59.546 43.478 0.00 0.00 0.00 3.24
146 147 4.080695 TCAGCAAGCTAGACATCAAGGATT 60.081 41.667 0.00 0.00 0.00 3.01
147 148 4.272991 CAGCAAGCTAGACATCAAGGATTC 59.727 45.833 0.00 0.00 0.00 2.52
148 149 4.080695 AGCAAGCTAGACATCAAGGATTCA 60.081 41.667 0.00 0.00 0.00 2.57
149 150 4.637534 GCAAGCTAGACATCAAGGATTCAA 59.362 41.667 0.00 0.00 0.00 2.69
150 151 5.220815 GCAAGCTAGACATCAAGGATTCAAG 60.221 44.000 0.00 0.00 0.00 3.02
151 152 5.033589 AGCTAGACATCAAGGATTCAAGG 57.966 43.478 0.00 0.00 0.00 3.61
152 153 4.718774 AGCTAGACATCAAGGATTCAAGGA 59.281 41.667 0.00 0.00 0.00 3.36
153 154 5.190528 AGCTAGACATCAAGGATTCAAGGAA 59.809 40.000 0.00 0.00 0.00 3.36
154 155 5.526846 GCTAGACATCAAGGATTCAAGGAAG 59.473 44.000 0.00 0.00 0.00 3.46
155 156 4.268359 AGACATCAAGGATTCAAGGAAGC 58.732 43.478 0.00 0.00 0.00 3.86
156 157 4.018597 AGACATCAAGGATTCAAGGAAGCT 60.019 41.667 0.00 0.00 0.00 3.74
157 158 4.670765 ACATCAAGGATTCAAGGAAGCTT 58.329 39.130 0.00 0.00 0.00 3.74
158 159 5.082425 ACATCAAGGATTCAAGGAAGCTTT 58.918 37.500 0.00 0.00 27.81 3.51
159 160 5.047519 ACATCAAGGATTCAAGGAAGCTTTG 60.048 40.000 11.35 11.35 43.12 2.77
160 161 4.473444 TCAAGGATTCAAGGAAGCTTTGT 58.527 39.130 15.41 0.00 42.62 2.83
161 162 4.279169 TCAAGGATTCAAGGAAGCTTTGTG 59.721 41.667 15.41 0.00 42.62 3.33
162 163 2.560105 AGGATTCAAGGAAGCTTTGTGC 59.440 45.455 0.00 0.00 43.29 4.57
163 164 2.353109 GGATTCAAGGAAGCTTTGTGCC 60.353 50.000 0.00 0.00 44.23 5.01
164 165 0.667993 TTCAAGGAAGCTTTGTGCCG 59.332 50.000 0.00 0.00 44.23 5.69
165 166 1.372128 CAAGGAAGCTTTGTGCCGC 60.372 57.895 0.00 0.00 44.23 6.53
166 167 1.529244 AAGGAAGCTTTGTGCCGCT 60.529 52.632 0.00 0.00 44.23 5.52
167 168 1.799258 AAGGAAGCTTTGTGCCGCTG 61.799 55.000 0.00 0.00 44.23 5.18
168 169 2.555547 GGAAGCTTTGTGCCGCTGT 61.556 57.895 0.00 0.00 44.23 4.40
169 170 1.360192 GAAGCTTTGTGCCGCTGTT 59.640 52.632 0.00 0.00 44.23 3.16
170 171 0.591170 GAAGCTTTGTGCCGCTGTTA 59.409 50.000 0.00 0.00 44.23 2.41
171 172 1.001815 GAAGCTTTGTGCCGCTGTTAA 60.002 47.619 0.00 0.00 44.23 2.01
172 173 0.593128 AGCTTTGTGCCGCTGTTAAG 59.407 50.000 0.00 0.00 44.23 1.85
173 174 1.003769 GCTTTGTGCCGCTGTTAAGC 61.004 55.000 0.00 0.00 46.66 3.09
186 187 5.411083 GCTGTTAAGCTACATTCCTAAGC 57.589 43.478 0.00 0.00 46.60 3.09
187 188 4.876107 GCTGTTAAGCTACATTCCTAAGCA 59.124 41.667 0.00 0.00 46.60 3.91
188 189 5.354234 GCTGTTAAGCTACATTCCTAAGCAA 59.646 40.000 0.00 0.00 46.60 3.91
189 190 6.675728 GCTGTTAAGCTACATTCCTAAGCAAC 60.676 42.308 0.00 0.00 46.60 4.17
190 191 5.350365 TGTTAAGCTACATTCCTAAGCAACG 59.650 40.000 0.00 0.00 38.75 4.10
191 192 3.611766 AGCTACATTCCTAAGCAACGT 57.388 42.857 0.00 0.00 38.75 3.99
192 193 3.939066 AGCTACATTCCTAAGCAACGTT 58.061 40.909 0.00 0.00 38.75 3.99
193 194 3.933332 AGCTACATTCCTAAGCAACGTTC 59.067 43.478 0.00 0.00 38.75 3.95
194 195 3.063588 GCTACATTCCTAAGCAACGTTCC 59.936 47.826 0.00 0.00 36.26 3.62
195 196 3.134574 ACATTCCTAAGCAACGTTCCA 57.865 42.857 0.00 0.00 0.00 3.53
196 197 3.074412 ACATTCCTAAGCAACGTTCCAG 58.926 45.455 0.00 0.00 0.00 3.86
197 198 2.178912 TTCCTAAGCAACGTTCCAGG 57.821 50.000 0.00 2.69 0.00 4.45
198 199 0.323629 TCCTAAGCAACGTTCCAGGG 59.676 55.000 0.00 0.00 0.00 4.45
199 200 0.036306 CCTAAGCAACGTTCCAGGGT 59.964 55.000 0.00 0.00 0.00 4.34
200 201 1.156736 CTAAGCAACGTTCCAGGGTG 58.843 55.000 0.00 0.00 0.00 4.61
201 202 0.250553 TAAGCAACGTTCCAGGGTGG 60.251 55.000 0.00 0.00 39.43 4.61
202 203 1.990160 AAGCAACGTTCCAGGGTGGA 61.990 55.000 0.00 0.00 46.61 4.02
210 211 1.076549 TCCAGGGTGGATTGGTTGC 59.923 57.895 0.00 0.00 42.67 4.17
211 212 1.228831 CCAGGGTGGATTGGTTGCA 60.229 57.895 0.00 0.00 40.96 4.08
212 213 0.831288 CCAGGGTGGATTGGTTGCAA 60.831 55.000 0.00 0.00 40.96 4.08
213 214 0.604578 CAGGGTGGATTGGTTGCAAG 59.395 55.000 0.00 0.00 0.00 4.01
214 215 1.187567 AGGGTGGATTGGTTGCAAGC 61.188 55.000 21.51 21.51 0.00 4.01
215 216 1.080569 GGTGGATTGGTTGCAAGCG 60.081 57.895 22.55 0.00 0.00 4.68
216 217 1.080569 GTGGATTGGTTGCAAGCGG 60.081 57.895 22.55 0.00 0.00 5.52
217 218 2.274645 TGGATTGGTTGCAAGCGGG 61.275 57.895 22.55 0.00 0.00 6.13
218 219 2.125952 GATTGGTTGCAAGCGGGC 60.126 61.111 22.55 10.80 0.00 6.13
219 220 3.969642 GATTGGTTGCAAGCGGGCG 62.970 63.158 22.55 0.00 36.28 6.13
223 224 4.389576 GTTGCAAGCGGGCGACAG 62.390 66.667 15.50 0.00 45.59 3.51
224 225 4.617520 TTGCAAGCGGGCGACAGA 62.618 61.111 0.00 0.00 36.28 3.41
227 228 2.434884 CAAGCGGGCGACAGACAT 60.435 61.111 0.00 0.00 0.00 3.06
228 229 2.434884 AAGCGGGCGACAGACATG 60.435 61.111 0.00 0.00 0.00 3.21
231 232 3.490759 CGGGCGACAGACATGCAC 61.491 66.667 0.00 0.00 0.00 4.57
232 233 2.358615 GGGCGACAGACATGCACA 60.359 61.111 0.00 0.00 30.72 4.57
233 234 1.965930 GGGCGACAGACATGCACAA 60.966 57.895 0.00 0.00 30.72 3.33
234 235 1.308069 GGGCGACAGACATGCACAAT 61.308 55.000 0.00 0.00 30.72 2.71
235 236 1.368641 GGCGACAGACATGCACAATA 58.631 50.000 0.00 0.00 0.00 1.90
236 237 1.942657 GGCGACAGACATGCACAATAT 59.057 47.619 0.00 0.00 0.00 1.28
237 238 2.355756 GGCGACAGACATGCACAATATT 59.644 45.455 0.00 0.00 0.00 1.28
238 239 3.181497 GGCGACAGACATGCACAATATTT 60.181 43.478 0.00 0.00 0.00 1.40
239 240 4.031028 GCGACAGACATGCACAATATTTC 58.969 43.478 0.00 0.00 0.00 2.17
240 241 4.266157 CGACAGACATGCACAATATTTCG 58.734 43.478 0.00 0.00 0.00 3.46
241 242 4.032786 CGACAGACATGCACAATATTTCGA 59.967 41.667 0.00 0.00 0.00 3.71
242 243 5.445806 CGACAGACATGCACAATATTTCGAA 60.446 40.000 0.00 0.00 0.00 3.71
243 244 6.252967 ACAGACATGCACAATATTTCGAAA 57.747 33.333 13.91 13.91 0.00 3.46
244 245 6.317088 ACAGACATGCACAATATTTCGAAAG 58.683 36.000 16.80 5.07 0.00 2.62
245 246 5.228635 CAGACATGCACAATATTTCGAAAGC 59.771 40.000 16.80 12.91 0.00 3.51
246 247 4.423732 ACATGCACAATATTTCGAAAGCC 58.576 39.130 16.80 0.43 0.00 4.35
247 248 3.129852 TGCACAATATTTCGAAAGCCG 57.870 42.857 16.80 7.21 40.25 5.52
248 249 1.846175 GCACAATATTTCGAAAGCCGC 59.154 47.619 16.80 8.86 38.37 6.53
249 250 2.730715 GCACAATATTTCGAAAGCCGCA 60.731 45.455 16.80 0.00 38.37 5.69
250 251 2.845967 CACAATATTTCGAAAGCCGCAC 59.154 45.455 16.80 0.00 38.37 5.34
251 252 2.101125 CAATATTTCGAAAGCCGCACG 58.899 47.619 16.80 0.00 38.37 5.34
252 253 1.365699 ATATTTCGAAAGCCGCACGT 58.634 45.000 16.80 0.00 38.37 4.49
253 254 1.149987 TATTTCGAAAGCCGCACGTT 58.850 45.000 16.80 0.00 38.37 3.99
254 255 0.110373 ATTTCGAAAGCCGCACGTTC 60.110 50.000 16.80 0.00 38.37 3.95
255 256 2.108344 TTTCGAAAGCCGCACGTTCC 62.108 55.000 6.47 0.00 38.37 3.62
256 257 3.342627 CGAAAGCCGCACGTTCCA 61.343 61.111 0.00 0.00 33.68 3.53
257 258 2.251371 GAAAGCCGCACGTTCCAC 59.749 61.111 0.00 0.00 31.32 4.02
274 275 2.342279 CGTGAGACGGAGGGCAAA 59.658 61.111 0.00 0.00 38.08 3.68
275 276 1.738099 CGTGAGACGGAGGGCAAAG 60.738 63.158 0.00 0.00 38.08 2.77
276 277 1.376037 GTGAGACGGAGGGCAAAGG 60.376 63.158 0.00 0.00 0.00 3.11
277 278 2.269241 GAGACGGAGGGCAAAGGG 59.731 66.667 0.00 0.00 0.00 3.95
278 279 3.978571 GAGACGGAGGGCAAAGGGC 62.979 68.421 0.00 0.00 43.74 5.19
279 280 4.035102 GACGGAGGGCAAAGGGCT 62.035 66.667 0.00 0.00 44.01 5.19
280 281 3.569200 GACGGAGGGCAAAGGGCTT 62.569 63.158 0.00 0.00 44.01 4.35
281 282 2.283173 CGGAGGGCAAAGGGCTTT 60.283 61.111 0.00 0.00 44.01 3.51
282 283 2.343426 CGGAGGGCAAAGGGCTTTC 61.343 63.158 0.00 0.00 44.01 2.62
283 284 1.228862 GGAGGGCAAAGGGCTTTCA 60.229 57.895 0.00 0.00 44.01 2.69
284 285 0.831711 GGAGGGCAAAGGGCTTTCAA 60.832 55.000 0.00 0.00 44.01 2.69
285 286 1.047801 GAGGGCAAAGGGCTTTCAAA 58.952 50.000 0.00 0.00 44.01 2.69
286 287 1.416030 GAGGGCAAAGGGCTTTCAAAA 59.584 47.619 0.00 0.00 44.01 2.44
287 288 1.843206 AGGGCAAAGGGCTTTCAAAAA 59.157 42.857 0.00 0.00 44.01 1.94
347 348 8.388484 TGGTCCATAATTTGAAAAATGTTTGG 57.612 30.769 0.00 0.00 0.00 3.28
348 349 8.213679 TGGTCCATAATTTGAAAAATGTTTGGA 58.786 29.630 0.00 7.13 0.00 3.53
349 350 9.061435 GGTCCATAATTTGAAAAATGTTTGGAA 57.939 29.630 10.60 0.00 0.00 3.53
459 460 4.153958 TGTTCACGAACATGTAAATGCC 57.846 40.909 8.51 0.00 45.42 4.40
460 461 3.818210 TGTTCACGAACATGTAAATGCCT 59.182 39.130 8.51 0.00 45.42 4.75
461 462 4.277174 TGTTCACGAACATGTAAATGCCTT 59.723 37.500 8.51 0.00 45.42 4.35
462 463 4.418013 TCACGAACATGTAAATGCCTTG 57.582 40.909 0.00 0.00 0.00 3.61
463 464 3.818210 TCACGAACATGTAAATGCCTTGT 59.182 39.130 0.00 0.00 0.00 3.16
464 465 3.913763 CACGAACATGTAAATGCCTTGTG 59.086 43.478 0.00 0.00 0.00 3.33
465 466 3.057596 ACGAACATGTAAATGCCTTGTGG 60.058 43.478 0.00 0.00 0.00 4.17
466 467 3.190327 CGAACATGTAAATGCCTTGTGGA 59.810 43.478 0.00 0.00 34.57 4.02
467 468 4.142403 CGAACATGTAAATGCCTTGTGGAT 60.142 41.667 0.00 0.00 34.57 3.41
468 469 4.724074 ACATGTAAATGCCTTGTGGATG 57.276 40.909 0.00 0.00 34.57 3.51
469 470 3.448301 ACATGTAAATGCCTTGTGGATGG 59.552 43.478 0.00 0.00 34.57 3.51
470 471 2.455557 TGTAAATGCCTTGTGGATGGG 58.544 47.619 0.00 0.00 34.57 4.00
471 472 2.042297 TGTAAATGCCTTGTGGATGGGA 59.958 45.455 0.00 0.00 34.57 4.37
472 473 1.560505 AAATGCCTTGTGGATGGGAC 58.439 50.000 0.00 0.00 34.57 4.46
473 474 0.324645 AATGCCTTGTGGATGGGACC 60.325 55.000 0.00 0.00 34.57 4.46
474 475 1.217057 ATGCCTTGTGGATGGGACCT 61.217 55.000 0.00 0.00 34.57 3.85
475 476 1.077429 GCCTTGTGGATGGGACCTC 60.077 63.158 0.00 0.00 34.57 3.85
476 477 1.566298 GCCTTGTGGATGGGACCTCT 61.566 60.000 0.00 0.00 34.57 3.69
477 478 1.879575 CCTTGTGGATGGGACCTCTA 58.120 55.000 0.00 0.00 34.57 2.43
478 479 2.412591 CCTTGTGGATGGGACCTCTAT 58.587 52.381 0.00 0.00 34.57 1.98
479 480 2.780010 CCTTGTGGATGGGACCTCTATT 59.220 50.000 0.00 0.00 34.57 1.73
480 481 3.181450 CCTTGTGGATGGGACCTCTATTC 60.181 52.174 0.00 0.00 34.57 1.75
481 482 2.408565 TGTGGATGGGACCTCTATTCC 58.591 52.381 0.00 0.00 0.00 3.01
482 483 1.344763 GTGGATGGGACCTCTATTCCG 59.655 57.143 0.00 0.00 33.43 4.30
483 484 0.321996 GGATGGGACCTCTATTCCGC 59.678 60.000 0.00 0.00 33.43 5.54
484 485 0.038159 GATGGGACCTCTATTCCGCG 60.038 60.000 0.00 0.00 33.43 6.46
485 486 2.029221 GGGACCTCTATTCCGCGC 59.971 66.667 0.00 0.00 33.43 6.86
486 487 2.792947 GGGACCTCTATTCCGCGCA 61.793 63.158 8.75 0.00 33.43 6.09
487 488 1.367840 GGACCTCTATTCCGCGCAT 59.632 57.895 8.75 0.00 0.00 4.73
488 489 0.601558 GGACCTCTATTCCGCGCATA 59.398 55.000 8.75 0.00 0.00 3.14
489 490 1.000506 GGACCTCTATTCCGCGCATAA 59.999 52.381 8.75 0.00 0.00 1.90
490 491 2.353803 GGACCTCTATTCCGCGCATAAT 60.354 50.000 8.75 8.89 0.00 1.28
491 492 2.668457 GACCTCTATTCCGCGCATAATG 59.332 50.000 8.75 2.05 0.00 1.90
492 493 2.002586 CCTCTATTCCGCGCATAATGG 58.997 52.381 8.75 8.46 0.00 3.16
493 494 2.002586 CTCTATTCCGCGCATAATGGG 58.997 52.381 8.75 0.00 0.00 4.00
494 495 1.346395 TCTATTCCGCGCATAATGGGT 59.654 47.619 8.75 0.00 32.36 4.51
495 496 1.464608 CTATTCCGCGCATAATGGGTG 59.535 52.381 8.75 0.00 40.03 4.61
496 497 1.795170 ATTCCGCGCATAATGGGTGC 61.795 55.000 8.75 0.00 39.16 5.01
497 498 3.208383 CCGCGCATAATGGGTGCA 61.208 61.111 8.75 0.00 42.62 4.57
498 499 2.328989 CGCGCATAATGGGTGCAG 59.671 61.111 8.75 0.00 42.62 4.41
499 500 2.026590 GCGCATAATGGGTGCAGC 59.973 61.111 7.55 7.55 42.62 5.25
500 501 2.328989 CGCATAATGGGTGCAGCG 59.671 61.111 10.24 3.88 42.62 5.18
501 502 2.723746 GCATAATGGGTGCAGCGG 59.276 61.111 10.24 0.00 42.08 5.52
502 503 1.823470 GCATAATGGGTGCAGCGGA 60.823 57.895 10.24 0.00 42.08 5.54
503 504 2.024918 CATAATGGGTGCAGCGGAC 58.975 57.895 10.24 0.00 0.00 4.79
504 505 0.747644 CATAATGGGTGCAGCGGACA 60.748 55.000 10.24 2.56 0.00 4.02
505 506 0.183492 ATAATGGGTGCAGCGGACAT 59.817 50.000 10.24 5.06 0.00 3.06
506 507 0.747644 TAATGGGTGCAGCGGACATG 60.748 55.000 10.24 0.00 0.00 3.21
512 513 4.082192 GCAGCGGACATGCAAATG 57.918 55.556 0.00 0.00 43.31 2.32
513 514 2.162754 GCAGCGGACATGCAAATGC 61.163 57.895 0.00 0.00 43.31 3.56
514 515 1.509463 CAGCGGACATGCAAATGCT 59.491 52.632 6.97 0.00 42.66 3.79
515 516 0.734309 CAGCGGACATGCAAATGCTA 59.266 50.000 6.97 0.00 42.66 3.49
516 517 1.132834 CAGCGGACATGCAAATGCTAA 59.867 47.619 6.97 0.00 42.66 3.09
517 518 1.133025 AGCGGACATGCAAATGCTAAC 59.867 47.619 6.97 0.00 42.66 2.34
518 519 1.798813 GCGGACATGCAAATGCTAACC 60.799 52.381 6.97 4.59 42.66 2.85
519 520 1.745087 CGGACATGCAAATGCTAACCT 59.255 47.619 6.97 0.00 42.66 3.50
520 521 2.164219 CGGACATGCAAATGCTAACCTT 59.836 45.455 6.97 0.00 42.66 3.50
521 522 3.376859 CGGACATGCAAATGCTAACCTTA 59.623 43.478 6.97 0.00 42.66 2.69
522 523 4.496341 CGGACATGCAAATGCTAACCTTAG 60.496 45.833 6.97 0.00 42.66 2.18
539 540 2.809601 GCCCGTAGCGACTGTGTG 60.810 66.667 0.00 0.00 0.00 3.82
540 541 2.126071 CCCGTAGCGACTGTGTGG 60.126 66.667 0.00 0.00 0.00 4.17
541 542 2.809601 CCGTAGCGACTGTGTGGC 60.810 66.667 0.00 0.00 37.53 5.01
548 549 4.664677 GACTGTGTGGCGCCTCGT 62.665 66.667 29.70 17.29 0.00 4.18
549 550 4.235762 ACTGTGTGGCGCCTCGTT 62.236 61.111 29.70 6.57 0.00 3.85
550 551 2.972505 CTGTGTGGCGCCTCGTTT 60.973 61.111 29.70 0.00 0.00 3.60
551 552 3.240606 CTGTGTGGCGCCTCGTTTG 62.241 63.158 29.70 11.65 0.00 2.93
552 553 4.683334 GTGTGGCGCCTCGTTTGC 62.683 66.667 29.70 9.28 0.00 3.68
553 554 4.927782 TGTGGCGCCTCGTTTGCT 62.928 61.111 29.70 0.00 0.00 3.91
554 555 4.389576 GTGGCGCCTCGTTTGCTG 62.390 66.667 29.70 0.00 0.00 4.41
560 561 3.058160 CCTCGTTTGCTGGCCCAG 61.058 66.667 6.32 6.32 34.12 4.45
561 562 3.058160 CTCGTTTGCTGGCCCAGG 61.058 66.667 13.78 0.00 31.21 4.45
562 563 3.850098 CTCGTTTGCTGGCCCAGGT 62.850 63.158 13.78 0.00 31.21 4.00
563 564 2.033448 CGTTTGCTGGCCCAGGTA 59.967 61.111 13.78 0.00 31.21 3.08
564 565 1.378514 CGTTTGCTGGCCCAGGTAT 60.379 57.895 13.78 0.00 31.21 2.73
565 566 1.656818 CGTTTGCTGGCCCAGGTATG 61.657 60.000 13.78 0.00 31.21 2.39
566 567 0.611896 GTTTGCTGGCCCAGGTATGT 60.612 55.000 13.78 0.00 31.21 2.29
567 568 0.114168 TTTGCTGGCCCAGGTATGTT 59.886 50.000 13.78 0.00 31.21 2.71
568 569 0.114168 TTGCTGGCCCAGGTATGTTT 59.886 50.000 13.78 0.00 31.21 2.83
569 570 0.995803 TGCTGGCCCAGGTATGTTTA 59.004 50.000 13.78 0.00 31.21 2.01
570 571 1.064758 TGCTGGCCCAGGTATGTTTAG 60.065 52.381 13.78 0.00 31.21 1.85
571 572 1.064685 GCTGGCCCAGGTATGTTTAGT 60.065 52.381 13.78 0.00 31.21 2.24
572 573 2.620627 GCTGGCCCAGGTATGTTTAGTT 60.621 50.000 13.78 0.00 31.21 2.24
573 574 3.279434 CTGGCCCAGGTATGTTTAGTTC 58.721 50.000 1.63 0.00 0.00 3.01
574 575 2.025699 TGGCCCAGGTATGTTTAGTTCC 60.026 50.000 0.00 0.00 0.00 3.62
575 576 2.025699 GGCCCAGGTATGTTTAGTTCCA 60.026 50.000 0.00 0.00 0.00 3.53
576 577 3.372675 GGCCCAGGTATGTTTAGTTCCAT 60.373 47.826 0.00 0.00 0.00 3.41
577 578 4.278310 GCCCAGGTATGTTTAGTTCCATT 58.722 43.478 0.00 0.00 0.00 3.16
578 579 4.709886 GCCCAGGTATGTTTAGTTCCATTT 59.290 41.667 0.00 0.00 0.00 2.32
579 580 5.394115 GCCCAGGTATGTTTAGTTCCATTTG 60.394 44.000 0.00 0.00 0.00 2.32
580 581 5.394115 CCCAGGTATGTTTAGTTCCATTTGC 60.394 44.000 0.00 0.00 0.00 3.68
581 582 5.418840 CCAGGTATGTTTAGTTCCATTTGCT 59.581 40.000 0.00 0.00 0.00 3.91
582 583 6.404734 CCAGGTATGTTTAGTTCCATTTGCTC 60.405 42.308 0.00 0.00 0.00 4.26
583 584 5.652452 AGGTATGTTTAGTTCCATTTGCTCC 59.348 40.000 0.00 0.00 0.00 4.70
584 585 5.417580 GGTATGTTTAGTTCCATTTGCTCCA 59.582 40.000 0.00 0.00 0.00 3.86
585 586 4.846779 TGTTTAGTTCCATTTGCTCCAC 57.153 40.909 0.00 0.00 0.00 4.02
586 587 3.572255 TGTTTAGTTCCATTTGCTCCACC 59.428 43.478 0.00 0.00 0.00 4.61
587 588 3.517296 TTAGTTCCATTTGCTCCACCA 57.483 42.857 0.00 0.00 0.00 4.17
588 589 2.610438 AGTTCCATTTGCTCCACCAT 57.390 45.000 0.00 0.00 0.00 3.55
589 590 2.450476 AGTTCCATTTGCTCCACCATC 58.550 47.619 0.00 0.00 0.00 3.51
590 591 2.042162 AGTTCCATTTGCTCCACCATCT 59.958 45.455 0.00 0.00 0.00 2.90
591 592 2.424956 GTTCCATTTGCTCCACCATCTC 59.575 50.000 0.00 0.00 0.00 2.75
592 593 1.064463 TCCATTTGCTCCACCATCTCC 60.064 52.381 0.00 0.00 0.00 3.71
593 594 1.019673 CATTTGCTCCACCATCTCCG 58.980 55.000 0.00 0.00 0.00 4.63
594 595 0.749454 ATTTGCTCCACCATCTCCGC 60.749 55.000 0.00 0.00 0.00 5.54
595 596 2.819984 TTTGCTCCACCATCTCCGCC 62.820 60.000 0.00 0.00 0.00 6.13
596 597 4.899239 GCTCCACCATCTCCGCCG 62.899 72.222 0.00 0.00 0.00 6.46
597 598 3.461773 CTCCACCATCTCCGCCGT 61.462 66.667 0.00 0.00 0.00 5.68
598 599 2.043752 TCCACCATCTCCGCCGTA 60.044 61.111 0.00 0.00 0.00 4.02
599 600 2.076622 CTCCACCATCTCCGCCGTAG 62.077 65.000 0.00 0.00 0.00 3.51
600 601 2.279517 CACCATCTCCGCCGTAGC 60.280 66.667 0.00 0.00 0.00 3.58
601 602 3.537874 ACCATCTCCGCCGTAGCC 61.538 66.667 0.00 0.00 34.57 3.93
602 603 3.536917 CCATCTCCGCCGTAGCCA 61.537 66.667 0.00 0.00 34.57 4.75
603 604 2.279517 CATCTCCGCCGTAGCCAC 60.280 66.667 0.00 0.00 34.57 5.01
604 605 2.758327 ATCTCCGCCGTAGCCACA 60.758 61.111 0.00 0.00 34.57 4.17
605 606 2.134287 ATCTCCGCCGTAGCCACAT 61.134 57.895 0.00 0.00 34.57 3.21
606 607 2.088674 ATCTCCGCCGTAGCCACATC 62.089 60.000 0.00 0.00 34.57 3.06
607 608 3.792053 CTCCGCCGTAGCCACATCC 62.792 68.421 0.00 0.00 34.57 3.51
608 609 3.849951 CCGCCGTAGCCACATCCT 61.850 66.667 0.00 0.00 34.57 3.24
609 610 2.495409 CCGCCGTAGCCACATCCTA 61.495 63.158 0.00 0.00 34.57 2.94
610 611 1.299926 CGCCGTAGCCACATCCTAC 60.300 63.158 0.00 0.00 34.57 3.18
611 612 1.735376 CGCCGTAGCCACATCCTACT 61.735 60.000 0.00 0.00 34.43 2.57
612 613 1.325355 GCCGTAGCCACATCCTACTA 58.675 55.000 0.00 0.00 34.43 1.82
613 614 1.893801 GCCGTAGCCACATCCTACTAT 59.106 52.381 0.00 0.00 34.43 2.12
614 615 3.087031 GCCGTAGCCACATCCTACTATA 58.913 50.000 0.00 0.00 34.43 1.31
615 616 3.700038 GCCGTAGCCACATCCTACTATAT 59.300 47.826 0.00 0.00 34.43 0.86
616 617 4.159879 GCCGTAGCCACATCCTACTATATT 59.840 45.833 0.00 0.00 34.43 1.28
617 618 5.337330 GCCGTAGCCACATCCTACTATATTT 60.337 44.000 0.00 0.00 34.43 1.40
618 619 6.698380 CCGTAGCCACATCCTACTATATTTT 58.302 40.000 0.00 0.00 34.43 1.82
619 620 7.159372 CCGTAGCCACATCCTACTATATTTTT 58.841 38.462 0.00 0.00 34.43 1.94
620 621 7.331193 CCGTAGCCACATCCTACTATATTTTTC 59.669 40.741 0.00 0.00 34.43 2.29
621 622 7.061905 CGTAGCCACATCCTACTATATTTTTCG 59.938 40.741 0.00 0.00 34.43 3.46
622 623 6.231211 AGCCACATCCTACTATATTTTTCGG 58.769 40.000 0.00 0.00 0.00 4.30
623 624 6.042781 AGCCACATCCTACTATATTTTTCGGA 59.957 38.462 0.00 0.00 0.00 4.55
624 625 6.369065 GCCACATCCTACTATATTTTTCGGAG 59.631 42.308 0.00 0.00 0.00 4.63
625 626 7.667557 CCACATCCTACTATATTTTTCGGAGA 58.332 38.462 0.00 0.00 0.00 3.71
626 627 8.148351 CCACATCCTACTATATTTTTCGGAGAA 58.852 37.037 0.00 0.00 45.90 2.87
627 628 8.979574 CACATCCTACTATATTTTTCGGAGAAC 58.020 37.037 0.00 0.00 45.90 3.01
628 629 8.148999 ACATCCTACTATATTTTTCGGAGAACC 58.851 37.037 0.00 0.00 45.90 3.62
629 630 7.664552 TCCTACTATATTTTTCGGAGAACCA 57.335 36.000 0.00 0.00 45.90 3.67
630 631 8.258850 TCCTACTATATTTTTCGGAGAACCAT 57.741 34.615 0.00 0.00 45.90 3.55
631 632 8.711170 TCCTACTATATTTTTCGGAGAACCATT 58.289 33.333 0.00 0.00 45.90 3.16
841 842 9.311916 TCAATAATTGCGGGATTTTAGAAAATG 57.688 29.630 4.98 0.00 38.64 2.32
842 843 9.097257 CAATAATTGCGGGATTTTAGAAAATGT 57.903 29.630 4.98 0.00 38.64 2.71
843 844 9.665719 AATAATTGCGGGATTTTAGAAAATGTT 57.334 25.926 4.98 0.00 38.64 2.71
844 845 7.595311 AATTGCGGGATTTTAGAAAATGTTC 57.405 32.000 4.98 0.00 38.64 3.18
845 846 5.066968 TGCGGGATTTTAGAAAATGTTCC 57.933 39.130 4.98 1.85 38.64 3.62
846 847 4.081917 TGCGGGATTTTAGAAAATGTTCCC 60.082 41.667 12.21 12.21 39.62 3.97
847 848 4.081917 GCGGGATTTTAGAAAATGTTCCCA 60.082 41.667 18.50 0.00 41.57 4.37
848 849 5.567823 GCGGGATTTTAGAAAATGTTCCCAA 60.568 40.000 18.50 0.00 41.57 4.12
849 850 6.459923 CGGGATTTTAGAAAATGTTCCCAAA 58.540 36.000 18.50 0.00 41.57 3.28
850 851 7.102993 CGGGATTTTAGAAAATGTTCCCAAAT 58.897 34.615 18.50 3.32 41.57 2.32
851 852 7.606073 CGGGATTTTAGAAAATGTTCCCAAATT 59.394 33.333 18.50 0.00 41.57 1.82
852 853 9.295825 GGGATTTTAGAAAATGTTCCCAAATTT 57.704 29.630 15.52 0.00 41.33 1.82
882 883 9.530633 AAAAGTATTATCGTAGATGTTCAGTCC 57.469 33.333 0.00 0.00 45.12 3.85
884 885 8.410673 AGTATTATCGTAGATGTTCAGTCCAT 57.589 34.615 0.00 0.00 45.12 3.41
885 886 9.516546 AGTATTATCGTAGATGTTCAGTCCATA 57.483 33.333 0.00 0.00 45.12 2.74
886 887 9.557338 GTATTATCGTAGATGTTCAGTCCATAC 57.443 37.037 0.00 0.00 45.12 2.39
887 888 7.818997 TTATCGTAGATGTTCAGTCCATACT 57.181 36.000 0.00 0.00 45.12 2.12
888 889 8.913487 TTATCGTAGATGTTCAGTCCATACTA 57.087 34.615 0.00 0.00 45.12 1.82
889 890 7.818997 ATCGTAGATGTTCAGTCCATACTAA 57.181 36.000 0.00 0.00 45.12 2.24
890 891 7.024340 TCGTAGATGTTCAGTCCATACTAAC 57.976 40.000 0.00 0.00 33.48 2.34
912 913 3.015327 CCATGCTCTCCTCTTTTTCAGG 58.985 50.000 0.00 0.00 0.00 3.86
922 923 4.755123 TCCTCTTTTTCAGGTTGTCGATTC 59.245 41.667 0.00 0.00 32.20 2.52
929 930 3.011818 TCAGGTTGTCGATTCGTAGCTA 58.988 45.455 5.89 0.00 0.00 3.32
950 951 3.070018 AGCTGTTTACTGTCAGTGCATC 58.930 45.455 16.03 7.55 34.57 3.91
951 952 3.070018 GCTGTTTACTGTCAGTGCATCT 58.930 45.455 16.03 0.00 34.57 2.90
970 971 0.320421 TAGCAACCTGTCTTCCACGC 60.320 55.000 0.00 0.00 0.00 5.34
973 974 0.813610 CAACCTGTCTTCCACGCACA 60.814 55.000 0.00 0.00 0.00 4.57
975 976 2.320587 CCTGTCTTCCACGCACAGC 61.321 63.158 0.00 0.00 36.91 4.40
997 998 1.481772 GACTGGCTGAGCTCTGAGATT 59.518 52.381 23.35 5.03 0.00 2.40
1003 1004 1.600013 CTGAGCTCTGAGATTGCATGC 59.400 52.381 16.19 11.82 0.00 4.06
1122 1123 3.067106 GACAGTTCGCAAGGAGATCAAA 58.933 45.455 0.00 0.00 38.47 2.69
1221 1222 7.775093 CAGGATAAAGTTTGGATGAATGAGGTA 59.225 37.037 0.00 0.00 0.00 3.08
1222 1223 8.336235 AGGATAAAGTTTGGATGAATGAGGTAA 58.664 33.333 0.00 0.00 0.00 2.85
1323 1324 7.099266 TGGCTTCATCGACAATATCAAAAAT 57.901 32.000 0.00 0.00 0.00 1.82
1354 1355 1.713078 AGTTGGGGAAGATGAAGGCTT 59.287 47.619 0.00 0.00 0.00 4.35
1433 1434 5.877012 GTGAGAGGAATGCAAGATACAAGAA 59.123 40.000 0.00 0.00 0.00 2.52
1546 1547 2.947127 GCCCAAGGCTGAGATAATCT 57.053 50.000 0.00 0.00 46.69 2.40
1551 1552 4.774726 CCCAAGGCTGAGATAATCTAGCTA 59.225 45.833 0.00 0.00 34.45 3.32
1671 1684 7.678218 GCAAACCAAGTATATCAAGAGCTCAAG 60.678 40.741 17.77 7.84 0.00 3.02
1683 1696 3.034635 AGAGCTCAAGGGACAATACGAT 58.965 45.455 17.77 0.00 0.00 3.73
1687 1700 3.309954 GCTCAAGGGACAATACGATTGTC 59.690 47.826 22.10 22.10 45.89 3.18
1717 1730 3.368539 CGTATCGGTTTCACGAAATCCAA 59.631 43.478 0.00 0.00 46.92 3.53
1727 1740 5.295431 TCACGAAATCCAAACATGATGAC 57.705 39.130 0.00 0.00 0.00 3.06
1774 1787 8.345565 GTGAAGTGGCTAATAAAGATTATGGTG 58.654 37.037 0.00 0.00 0.00 4.17
1817 1830 2.408050 ACAACTCGTCAGCAAGATCAC 58.592 47.619 0.00 0.00 0.00 3.06
1821 1834 2.094803 ACTCGTCAGCAAGATCACTGAG 60.095 50.000 11.94 7.85 43.30 3.35
1829 1842 3.834813 AGCAAGATCACTGAGTTCCTACA 59.165 43.478 0.00 0.00 0.00 2.74
1885 1903 8.567285 TCCTTTTTATTTCTCCTTGTCATCTC 57.433 34.615 0.00 0.00 0.00 2.75
1938 1965 7.921745 GTCATAGGAAGATTGTACTAGTGGAAC 59.078 40.741 5.39 0.00 0.00 3.62
1956 1983 6.478512 TGGAACTTGTTAAAAAGCTCCATT 57.521 33.333 21.73 2.74 43.96 3.16
2059 2242 2.103263 GTGTTAGGAGTAGAGCCCCATG 59.897 54.545 0.00 0.00 0.00 3.66
2076 2259 5.195940 CCCCATGACACTACATTTTCTCAT 58.804 41.667 0.00 0.00 0.00 2.90
2126 2309 4.769345 AATTCTCCTTGAGCTCCCTTAG 57.231 45.455 12.15 4.13 0.00 2.18
2154 2337 8.193953 TCCTGATCTATAATTATCTGTGCACA 57.806 34.615 20.37 20.37 0.00 4.57
2210 2394 4.379394 CCATGTTACCTGATTTTCACACGG 60.379 45.833 0.00 0.00 0.00 4.94
2262 2469 2.783510 TCCACCTCTCCCTTGTTTCTTT 59.216 45.455 0.00 0.00 0.00 2.52
2272 2479 6.044404 TCTCCCTTGTTTCTTTAGACCAGATT 59.956 38.462 0.00 0.00 0.00 2.40
2273 2480 7.236847 TCTCCCTTGTTTCTTTAGACCAGATTA 59.763 37.037 0.00 0.00 0.00 1.75
2310 2517 5.200483 ACACTCTTCTTCCTATCCTCTCTG 58.800 45.833 0.00 0.00 0.00 3.35
2338 2545 2.003658 AACCAAACGCCACACTGCTG 62.004 55.000 0.00 0.00 0.00 4.41
2376 2583 3.244009 CGTTGAGATCCACTAGGCATCAT 60.244 47.826 0.00 0.00 33.74 2.45
2506 2722 2.357009 GCATGCCCAAATCAGTAGTCTG 59.643 50.000 6.36 0.00 42.54 3.51
2507 2723 2.113860 TGCCCAAATCAGTAGTCTGC 57.886 50.000 0.00 0.00 41.10 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.179368 GCAAAGAAGCAATGACAGTACAGTA 59.821 40.000 0.00 0.00 0.00 2.74
1 2 4.023707 GCAAAGAAGCAATGACAGTACAGT 60.024 41.667 0.00 0.00 0.00 3.55
2 3 4.470462 GCAAAGAAGCAATGACAGTACAG 58.530 43.478 0.00 0.00 0.00 2.74
3 4 3.253188 GGCAAAGAAGCAATGACAGTACA 59.747 43.478 0.00 0.00 35.83 2.90
4 5 3.503748 AGGCAAAGAAGCAATGACAGTAC 59.496 43.478 0.00 0.00 35.83 2.73
5 6 3.503363 CAGGCAAAGAAGCAATGACAGTA 59.497 43.478 0.00 0.00 35.83 2.74
6 7 2.295349 CAGGCAAAGAAGCAATGACAGT 59.705 45.455 0.00 0.00 35.83 3.55
7 8 2.555325 TCAGGCAAAGAAGCAATGACAG 59.445 45.455 0.00 0.00 35.83 3.51
8 9 2.294233 GTCAGGCAAAGAAGCAATGACA 59.706 45.455 14.56 0.00 44.96 3.58
9 10 2.294233 TGTCAGGCAAAGAAGCAATGAC 59.706 45.455 13.30 13.30 45.40 3.06
10 11 2.585330 TGTCAGGCAAAGAAGCAATGA 58.415 42.857 0.00 0.00 35.83 2.57
11 12 3.250744 CATGTCAGGCAAAGAAGCAATG 58.749 45.455 0.00 0.00 35.83 2.82
12 13 2.353406 GCATGTCAGGCAAAGAAGCAAT 60.353 45.455 4.24 0.00 35.83 3.56
13 14 1.000060 GCATGTCAGGCAAAGAAGCAA 60.000 47.619 4.24 0.00 35.83 3.91
14 15 0.599558 GCATGTCAGGCAAAGAAGCA 59.400 50.000 4.24 0.00 35.83 3.91
15 16 0.108945 GGCATGTCAGGCAAAGAAGC 60.109 55.000 12.15 0.00 0.00 3.86
16 17 1.542492 AGGCATGTCAGGCAAAGAAG 58.458 50.000 12.15 0.00 36.37 2.85
17 18 1.888512 GAAGGCATGTCAGGCAAAGAA 59.111 47.619 12.15 0.00 36.37 2.52
18 19 1.074405 AGAAGGCATGTCAGGCAAAGA 59.926 47.619 12.15 0.00 36.37 2.52
19 20 1.471684 GAGAAGGCATGTCAGGCAAAG 59.528 52.381 12.15 0.00 36.37 2.77
20 21 1.538047 GAGAAGGCATGTCAGGCAAA 58.462 50.000 12.15 0.00 36.37 3.68
21 22 0.322816 GGAGAAGGCATGTCAGGCAA 60.323 55.000 12.15 0.00 36.37 4.52
22 23 1.203441 AGGAGAAGGCATGTCAGGCA 61.203 55.000 12.15 0.00 36.37 4.75
23 24 0.034670 AAGGAGAAGGCATGTCAGGC 60.035 55.000 0.00 0.00 0.00 4.85
24 25 3.634397 TTAAGGAGAAGGCATGTCAGG 57.366 47.619 0.00 0.00 0.00 3.86
25 26 5.964958 TTTTTAAGGAGAAGGCATGTCAG 57.035 39.130 0.00 0.00 0.00 3.51
59 60 6.635755 TCAAGGGTTTTTCGTTCATCTTTTT 58.364 32.000 0.00 0.00 0.00 1.94
60 61 6.215495 TCAAGGGTTTTTCGTTCATCTTTT 57.785 33.333 0.00 0.00 0.00 2.27
61 62 5.221244 CCTCAAGGGTTTTTCGTTCATCTTT 60.221 40.000 0.00 0.00 0.00 2.52
62 63 4.278419 CCTCAAGGGTTTTTCGTTCATCTT 59.722 41.667 0.00 0.00 0.00 2.40
63 64 3.821033 CCTCAAGGGTTTTTCGTTCATCT 59.179 43.478 0.00 0.00 0.00 2.90
64 65 3.818773 TCCTCAAGGGTTTTTCGTTCATC 59.181 43.478 0.00 0.00 36.25 2.92
65 66 3.827722 TCCTCAAGGGTTTTTCGTTCAT 58.172 40.909 0.00 0.00 36.25 2.57
66 67 3.284793 TCCTCAAGGGTTTTTCGTTCA 57.715 42.857 0.00 0.00 36.25 3.18
67 68 4.277423 TCATTCCTCAAGGGTTTTTCGTTC 59.723 41.667 0.00 0.00 36.25 3.95
68 69 4.211920 TCATTCCTCAAGGGTTTTTCGTT 58.788 39.130 0.00 0.00 36.25 3.85
69 70 3.827722 TCATTCCTCAAGGGTTTTTCGT 58.172 40.909 0.00 0.00 36.25 3.85
70 71 4.278419 ACTTCATTCCTCAAGGGTTTTTCG 59.722 41.667 0.00 0.00 36.25 3.46
71 72 5.301805 TGACTTCATTCCTCAAGGGTTTTTC 59.698 40.000 0.00 0.00 36.25 2.29
72 73 5.208121 TGACTTCATTCCTCAAGGGTTTTT 58.792 37.500 0.00 0.00 36.25 1.94
73 74 4.803452 TGACTTCATTCCTCAAGGGTTTT 58.197 39.130 0.00 0.00 36.25 2.43
74 75 4.453480 TGACTTCATTCCTCAAGGGTTT 57.547 40.909 0.00 0.00 36.25 3.27
75 76 4.290722 AGATGACTTCATTCCTCAAGGGTT 59.709 41.667 0.00 0.00 36.57 4.11
76 77 3.848975 AGATGACTTCATTCCTCAAGGGT 59.151 43.478 0.00 0.00 36.57 4.34
77 78 4.197750 CAGATGACTTCATTCCTCAAGGG 58.802 47.826 0.00 0.00 36.57 3.95
78 79 4.841422 ACAGATGACTTCATTCCTCAAGG 58.159 43.478 0.00 0.00 36.57 3.61
79 80 6.534436 CAGTACAGATGACTTCATTCCTCAAG 59.466 42.308 0.00 0.00 36.57 3.02
80 81 6.014242 ACAGTACAGATGACTTCATTCCTCAA 60.014 38.462 0.00 0.00 36.57 3.02
81 82 5.481824 ACAGTACAGATGACTTCATTCCTCA 59.518 40.000 0.00 0.00 36.57 3.86
82 83 5.971763 ACAGTACAGATGACTTCATTCCTC 58.028 41.667 0.00 0.00 36.57 3.71
83 84 6.365970 AACAGTACAGATGACTTCATTCCT 57.634 37.500 0.00 0.00 36.57 3.36
84 85 8.547967 TTTAACAGTACAGATGACTTCATTCC 57.452 34.615 0.00 0.00 36.57 3.01
112 113 6.488006 TGTCTAGCTTGCTGAAGAATTTTTCT 59.512 34.615 9.84 0.00 43.15 2.52
113 114 6.672147 TGTCTAGCTTGCTGAAGAATTTTTC 58.328 36.000 5.26 1.81 0.00 2.29
114 115 6.639632 TGTCTAGCTTGCTGAAGAATTTTT 57.360 33.333 5.26 0.00 0.00 1.94
115 116 6.432162 TGATGTCTAGCTTGCTGAAGAATTTT 59.568 34.615 5.26 0.00 0.00 1.82
116 117 5.942236 TGATGTCTAGCTTGCTGAAGAATTT 59.058 36.000 5.26 0.00 0.00 1.82
117 118 5.494724 TGATGTCTAGCTTGCTGAAGAATT 58.505 37.500 5.26 0.00 0.00 2.17
118 119 5.095145 TGATGTCTAGCTTGCTGAAGAAT 57.905 39.130 5.26 0.00 0.00 2.40
119 120 4.541973 TGATGTCTAGCTTGCTGAAGAA 57.458 40.909 5.26 0.00 0.00 2.52
120 121 4.502016 CTTGATGTCTAGCTTGCTGAAGA 58.498 43.478 5.26 0.00 0.00 2.87
121 122 3.622163 CCTTGATGTCTAGCTTGCTGAAG 59.378 47.826 5.26 0.00 0.00 3.02
122 123 3.261643 TCCTTGATGTCTAGCTTGCTGAA 59.738 43.478 5.26 0.00 0.00 3.02
123 124 2.833943 TCCTTGATGTCTAGCTTGCTGA 59.166 45.455 5.26 0.00 0.00 4.26
124 125 3.257469 TCCTTGATGTCTAGCTTGCTG 57.743 47.619 5.26 0.00 0.00 4.41
125 126 4.080695 TGAATCCTTGATGTCTAGCTTGCT 60.081 41.667 0.00 0.00 0.00 3.91
126 127 4.194640 TGAATCCTTGATGTCTAGCTTGC 58.805 43.478 0.00 0.00 0.00 4.01
127 128 5.296283 CCTTGAATCCTTGATGTCTAGCTTG 59.704 44.000 0.00 0.00 0.00 4.01
128 129 5.190528 TCCTTGAATCCTTGATGTCTAGCTT 59.809 40.000 0.00 0.00 0.00 3.74
129 130 4.718774 TCCTTGAATCCTTGATGTCTAGCT 59.281 41.667 0.00 0.00 0.00 3.32
130 131 5.028549 TCCTTGAATCCTTGATGTCTAGC 57.971 43.478 0.00 0.00 0.00 3.42
131 132 5.526846 GCTTCCTTGAATCCTTGATGTCTAG 59.473 44.000 0.00 0.00 0.00 2.43
132 133 5.190528 AGCTTCCTTGAATCCTTGATGTCTA 59.809 40.000 0.00 0.00 0.00 2.59
133 134 4.018597 AGCTTCCTTGAATCCTTGATGTCT 60.019 41.667 0.00 0.00 0.00 3.41
134 135 4.268359 AGCTTCCTTGAATCCTTGATGTC 58.732 43.478 0.00 0.00 0.00 3.06
135 136 4.313020 AGCTTCCTTGAATCCTTGATGT 57.687 40.909 0.00 0.00 0.00 3.06
136 137 5.047519 ACAAAGCTTCCTTGAATCCTTGATG 60.048 40.000 0.00 0.00 0.00 3.07
137 138 5.047519 CACAAAGCTTCCTTGAATCCTTGAT 60.048 40.000 0.00 0.00 0.00 2.57
138 139 4.279169 CACAAAGCTTCCTTGAATCCTTGA 59.721 41.667 0.00 0.00 0.00 3.02
139 140 4.553323 CACAAAGCTTCCTTGAATCCTTG 58.447 43.478 0.00 0.00 0.00 3.61
140 141 3.006217 GCACAAAGCTTCCTTGAATCCTT 59.994 43.478 0.00 0.00 41.15 3.36
141 142 2.560105 GCACAAAGCTTCCTTGAATCCT 59.440 45.455 0.00 0.00 41.15 3.24
142 143 2.353109 GGCACAAAGCTTCCTTGAATCC 60.353 50.000 0.00 0.00 44.79 3.01
143 144 2.669391 CGGCACAAAGCTTCCTTGAATC 60.669 50.000 0.00 0.00 44.79 2.52
144 145 1.270550 CGGCACAAAGCTTCCTTGAAT 59.729 47.619 0.00 0.00 44.79 2.57
145 146 0.667993 CGGCACAAAGCTTCCTTGAA 59.332 50.000 0.00 0.00 44.79 2.69
146 147 1.795170 GCGGCACAAAGCTTCCTTGA 61.795 55.000 0.00 0.00 44.79 3.02
147 148 1.372128 GCGGCACAAAGCTTCCTTG 60.372 57.895 0.00 0.00 44.79 3.61
148 149 1.529244 AGCGGCACAAAGCTTCCTT 60.529 52.632 0.00 0.00 41.52 3.36
149 150 2.113986 AGCGGCACAAAGCTTCCT 59.886 55.556 0.00 0.00 41.52 3.36
150 151 2.075426 AACAGCGGCACAAAGCTTCC 62.075 55.000 0.00 0.00 42.52 3.46
151 152 0.591170 TAACAGCGGCACAAAGCTTC 59.409 50.000 0.00 0.00 42.52 3.86
152 153 1.001378 CTTAACAGCGGCACAAAGCTT 60.001 47.619 1.45 0.00 42.52 3.74
153 154 0.593128 CTTAACAGCGGCACAAAGCT 59.407 50.000 1.45 0.00 45.74 3.74
154 155 1.003769 GCTTAACAGCGGCACAAAGC 61.004 55.000 1.45 8.08 38.39 3.51
155 156 3.092081 GCTTAACAGCGGCACAAAG 57.908 52.632 1.45 1.51 35.91 2.77
165 166 6.455646 CGTTGCTTAGGAATGTAGCTTAACAG 60.456 42.308 0.00 0.00 35.93 3.16
166 167 5.350365 CGTTGCTTAGGAATGTAGCTTAACA 59.650 40.000 0.00 0.00 35.93 2.41
167 168 5.350640 ACGTTGCTTAGGAATGTAGCTTAAC 59.649 40.000 9.55 0.00 35.93 2.01
168 169 5.484715 ACGTTGCTTAGGAATGTAGCTTAA 58.515 37.500 9.55 0.00 35.93 1.85
169 170 5.080969 ACGTTGCTTAGGAATGTAGCTTA 57.919 39.130 9.55 0.00 35.93 3.09
170 171 3.939066 ACGTTGCTTAGGAATGTAGCTT 58.061 40.909 9.55 0.00 35.93 3.74
171 172 3.611766 ACGTTGCTTAGGAATGTAGCT 57.388 42.857 9.55 0.00 35.93 3.32
172 173 3.063588 GGAACGTTGCTTAGGAATGTAGC 59.936 47.826 13.06 7.27 35.50 3.58
173 174 4.250464 TGGAACGTTGCTTAGGAATGTAG 58.750 43.478 20.82 0.00 0.00 2.74
174 175 4.250464 CTGGAACGTTGCTTAGGAATGTA 58.750 43.478 20.82 0.00 0.00 2.29
175 176 3.074412 CTGGAACGTTGCTTAGGAATGT 58.926 45.455 20.82 5.50 0.00 2.71
176 177 2.420022 CCTGGAACGTTGCTTAGGAATG 59.580 50.000 20.82 4.14 0.00 2.67
177 178 2.618045 CCCTGGAACGTTGCTTAGGAAT 60.618 50.000 22.66 0.00 0.00 3.01
178 179 1.271163 CCCTGGAACGTTGCTTAGGAA 60.271 52.381 22.66 1.90 0.00 3.36
179 180 0.323629 CCCTGGAACGTTGCTTAGGA 59.676 55.000 22.66 2.58 0.00 2.94
180 181 0.036306 ACCCTGGAACGTTGCTTAGG 59.964 55.000 20.82 18.38 0.00 2.69
181 182 1.156736 CACCCTGGAACGTTGCTTAG 58.843 55.000 20.82 10.48 0.00 2.18
182 183 0.250553 CCACCCTGGAACGTTGCTTA 60.251 55.000 20.82 0.22 40.96 3.09
183 184 1.528309 CCACCCTGGAACGTTGCTT 60.528 57.895 20.82 0.00 40.96 3.91
184 185 2.113139 CCACCCTGGAACGTTGCT 59.887 61.111 20.82 0.00 40.96 3.91
185 186 2.112297 TCCACCCTGGAACGTTGC 59.888 61.111 13.47 13.47 45.00 4.17
193 194 0.831288 TTGCAACCAATCCACCCTGG 60.831 55.000 0.00 0.00 39.43 4.45
194 195 0.604578 CTTGCAACCAATCCACCCTG 59.395 55.000 0.00 0.00 0.00 4.45
195 196 1.187567 GCTTGCAACCAATCCACCCT 61.188 55.000 0.00 0.00 0.00 4.34
196 197 1.293179 GCTTGCAACCAATCCACCC 59.707 57.895 0.00 0.00 0.00 4.61
197 198 1.080569 CGCTTGCAACCAATCCACC 60.081 57.895 0.00 0.00 0.00 4.61
198 199 1.080569 CCGCTTGCAACCAATCCAC 60.081 57.895 0.00 0.00 0.00 4.02
199 200 2.274645 CCCGCTTGCAACCAATCCA 61.275 57.895 0.00 0.00 0.00 3.41
200 201 2.573340 CCCGCTTGCAACCAATCC 59.427 61.111 0.00 0.00 0.00 3.01
201 202 2.125952 GCCCGCTTGCAACCAATC 60.126 61.111 0.00 0.00 0.00 2.67
202 203 4.054825 CGCCCGCTTGCAACCAAT 62.055 61.111 0.00 0.00 0.00 3.16
206 207 4.389576 CTGTCGCCCGCTTGCAAC 62.390 66.667 0.00 0.00 0.00 4.17
207 208 4.617520 TCTGTCGCCCGCTTGCAA 62.618 61.111 0.00 0.00 0.00 4.08
210 211 2.434884 ATGTCTGTCGCCCGCTTG 60.435 61.111 0.00 0.00 0.00 4.01
211 212 2.434884 CATGTCTGTCGCCCGCTT 60.435 61.111 0.00 0.00 0.00 4.68
214 215 3.490759 GTGCATGTCTGTCGCCCG 61.491 66.667 0.00 0.00 0.00 6.13
215 216 1.308069 ATTGTGCATGTCTGTCGCCC 61.308 55.000 0.00 0.00 0.00 6.13
216 217 1.368641 TATTGTGCATGTCTGTCGCC 58.631 50.000 0.00 0.00 0.00 5.54
217 218 3.680642 AATATTGTGCATGTCTGTCGC 57.319 42.857 0.00 0.00 0.00 5.19
218 219 4.032786 TCGAAATATTGTGCATGTCTGTCG 59.967 41.667 0.00 0.00 0.00 4.35
219 220 5.469373 TCGAAATATTGTGCATGTCTGTC 57.531 39.130 0.00 0.00 0.00 3.51
220 221 5.878332 TTCGAAATATTGTGCATGTCTGT 57.122 34.783 0.00 0.00 0.00 3.41
221 222 5.228635 GCTTTCGAAATATTGTGCATGTCTG 59.771 40.000 11.70 0.00 0.00 3.51
222 223 5.335127 GCTTTCGAAATATTGTGCATGTCT 58.665 37.500 11.70 0.00 0.00 3.41
223 224 4.500477 GGCTTTCGAAATATTGTGCATGTC 59.500 41.667 11.70 0.00 0.00 3.06
224 225 4.423732 GGCTTTCGAAATATTGTGCATGT 58.576 39.130 11.70 0.00 0.00 3.21
225 226 3.483196 CGGCTTTCGAAATATTGTGCATG 59.517 43.478 11.70 3.28 42.43 4.06
226 227 3.694734 CGGCTTTCGAAATATTGTGCAT 58.305 40.909 11.70 0.00 42.43 3.96
227 228 2.730715 GCGGCTTTCGAAATATTGTGCA 60.731 45.455 11.70 0.00 42.43 4.57
228 229 1.846175 GCGGCTTTCGAAATATTGTGC 59.154 47.619 11.70 9.87 42.43 4.57
229 230 2.845967 GTGCGGCTTTCGAAATATTGTG 59.154 45.455 11.70 0.00 42.43 3.33
230 231 2.475519 CGTGCGGCTTTCGAAATATTGT 60.476 45.455 11.70 0.00 42.43 2.71
231 232 2.101125 CGTGCGGCTTTCGAAATATTG 58.899 47.619 11.70 0.47 42.43 1.90
232 233 1.735571 ACGTGCGGCTTTCGAAATATT 59.264 42.857 11.70 0.00 42.43 1.28
233 234 1.365699 ACGTGCGGCTTTCGAAATAT 58.634 45.000 11.70 0.00 42.43 1.28
234 235 1.127213 GAACGTGCGGCTTTCGAAATA 59.873 47.619 11.70 0.00 42.43 1.40
235 236 0.110373 GAACGTGCGGCTTTCGAAAT 60.110 50.000 11.70 0.00 42.43 2.17
236 237 1.277440 GAACGTGCGGCTTTCGAAA 59.723 52.632 10.71 10.71 42.43 3.46
237 238 2.600475 GGAACGTGCGGCTTTCGAA 61.600 57.895 16.17 0.00 42.43 3.71
238 239 3.039588 GGAACGTGCGGCTTTCGA 61.040 61.111 16.17 0.00 42.43 3.71
239 240 3.342627 TGGAACGTGCGGCTTTCG 61.343 61.111 0.00 6.40 42.76 3.46
240 241 2.251371 GTGGAACGTGCGGCTTTC 59.749 61.111 0.00 1.39 0.00 2.62
251 252 1.080705 CCTCCGTCTCACGTGGAAC 60.081 63.158 17.00 12.93 40.58 3.62
252 253 2.273179 CCCTCCGTCTCACGTGGAA 61.273 63.158 17.00 0.62 40.58 3.53
253 254 2.675423 CCCTCCGTCTCACGTGGA 60.675 66.667 17.00 9.19 40.58 4.02
254 255 4.436998 GCCCTCCGTCTCACGTGG 62.437 72.222 17.00 6.71 40.58 4.94
255 256 2.709125 TTTGCCCTCCGTCTCACGTG 62.709 60.000 9.94 9.94 40.58 4.49
256 257 2.436087 CTTTGCCCTCCGTCTCACGT 62.436 60.000 0.00 0.00 40.58 4.49
257 258 1.738099 CTTTGCCCTCCGTCTCACG 60.738 63.158 0.00 0.00 42.11 4.35
258 259 1.376037 CCTTTGCCCTCCGTCTCAC 60.376 63.158 0.00 0.00 0.00 3.51
259 260 2.592993 CCCTTTGCCCTCCGTCTCA 61.593 63.158 0.00 0.00 0.00 3.27
260 261 2.269241 CCCTTTGCCCTCCGTCTC 59.731 66.667 0.00 0.00 0.00 3.36
261 262 4.035102 GCCCTTTGCCCTCCGTCT 62.035 66.667 0.00 0.00 0.00 4.18
262 263 3.569200 AAGCCCTTTGCCCTCCGTC 62.569 63.158 0.00 0.00 42.71 4.79
263 264 3.146828 AAAGCCCTTTGCCCTCCGT 62.147 57.895 0.00 0.00 42.71 4.69
264 265 2.283173 AAAGCCCTTTGCCCTCCG 60.283 61.111 0.00 0.00 42.71 4.63
265 266 0.831711 TTGAAAGCCCTTTGCCCTCC 60.832 55.000 0.00 0.00 42.71 4.30
266 267 1.047801 TTTGAAAGCCCTTTGCCCTC 58.952 50.000 0.00 0.00 42.71 4.30
267 268 1.506025 TTTTGAAAGCCCTTTGCCCT 58.494 45.000 0.00 0.00 42.71 5.19
268 269 2.340210 TTTTTGAAAGCCCTTTGCCC 57.660 45.000 0.00 0.00 42.71 5.36
321 322 9.012161 CCAAACATTTTTCAAATTATGGACCAT 57.988 29.630 12.67 12.67 0.00 3.55
322 323 8.213679 TCCAAACATTTTTCAAATTATGGACCA 58.786 29.630 0.00 0.00 0.00 4.02
323 324 8.614469 TCCAAACATTTTTCAAATTATGGACC 57.386 30.769 0.00 0.00 0.00 4.46
439 440 4.419522 AGGCATTTACATGTTCGTGAAC 57.580 40.909 2.30 5.80 41.50 3.18
440 441 4.277174 ACAAGGCATTTACATGTTCGTGAA 59.723 37.500 2.30 0.00 32.28 3.18
441 442 3.818210 ACAAGGCATTTACATGTTCGTGA 59.182 39.130 2.30 0.00 32.28 4.35
442 443 3.913763 CACAAGGCATTTACATGTTCGTG 59.086 43.478 2.30 1.52 32.28 4.35
443 444 3.057596 CCACAAGGCATTTACATGTTCGT 60.058 43.478 2.30 0.00 32.28 3.85
444 445 3.190327 TCCACAAGGCATTTACATGTTCG 59.810 43.478 2.30 0.00 32.28 3.95
445 446 4.782019 TCCACAAGGCATTTACATGTTC 57.218 40.909 2.30 0.00 32.28 3.18
446 447 4.081531 CCATCCACAAGGCATTTACATGTT 60.082 41.667 2.30 0.00 32.28 2.71
447 448 3.448301 CCATCCACAAGGCATTTACATGT 59.552 43.478 2.69 2.69 32.28 3.21
448 449 3.181473 CCCATCCACAAGGCATTTACATG 60.181 47.826 0.00 0.00 33.74 3.21
449 450 3.033184 CCCATCCACAAGGCATTTACAT 58.967 45.455 0.00 0.00 33.74 2.29
450 451 2.042297 TCCCATCCACAAGGCATTTACA 59.958 45.455 0.00 0.00 33.74 2.41
451 452 2.427095 GTCCCATCCACAAGGCATTTAC 59.573 50.000 0.00 0.00 33.74 2.01
452 453 2.622977 GGTCCCATCCACAAGGCATTTA 60.623 50.000 0.00 0.00 33.74 1.40
453 454 1.560505 GTCCCATCCACAAGGCATTT 58.439 50.000 0.00 0.00 33.74 2.32
454 455 0.324645 GGTCCCATCCACAAGGCATT 60.325 55.000 0.00 0.00 33.74 3.56
455 456 1.217057 AGGTCCCATCCACAAGGCAT 61.217 55.000 0.00 0.00 33.74 4.40
456 457 1.852157 AGGTCCCATCCACAAGGCA 60.852 57.895 0.00 0.00 33.74 4.75
457 458 1.077429 GAGGTCCCATCCACAAGGC 60.077 63.158 0.00 0.00 33.74 4.35
458 459 1.879575 TAGAGGTCCCATCCACAAGG 58.120 55.000 0.00 0.00 0.00 3.61
459 460 3.181450 GGAATAGAGGTCCCATCCACAAG 60.181 52.174 0.00 0.00 0.00 3.16
460 461 2.777692 GGAATAGAGGTCCCATCCACAA 59.222 50.000 0.00 0.00 0.00 3.33
461 462 2.408565 GGAATAGAGGTCCCATCCACA 58.591 52.381 0.00 0.00 0.00 4.17
462 463 1.344763 CGGAATAGAGGTCCCATCCAC 59.655 57.143 0.00 0.00 0.00 4.02
463 464 1.717032 CGGAATAGAGGTCCCATCCA 58.283 55.000 0.00 0.00 0.00 3.41
464 465 0.321996 GCGGAATAGAGGTCCCATCC 59.678 60.000 0.00 0.00 0.00 3.51
465 466 0.038159 CGCGGAATAGAGGTCCCATC 60.038 60.000 0.00 0.00 0.00 3.51
466 467 2.050269 CGCGGAATAGAGGTCCCAT 58.950 57.895 0.00 0.00 0.00 4.00
467 468 2.792947 GCGCGGAATAGAGGTCCCA 61.793 63.158 8.83 0.00 0.00 4.37
468 469 2.029221 GCGCGGAATAGAGGTCCC 59.971 66.667 8.83 0.00 0.00 4.46
469 470 0.601558 TATGCGCGGAATAGAGGTCC 59.398 55.000 3.18 0.00 0.00 4.46
470 471 2.433868 TTATGCGCGGAATAGAGGTC 57.566 50.000 3.18 0.00 0.00 3.85
471 472 2.612972 CCATTATGCGCGGAATAGAGGT 60.613 50.000 3.18 0.00 0.00 3.85
472 473 2.002586 CCATTATGCGCGGAATAGAGG 58.997 52.381 3.18 0.00 0.00 3.69
473 474 2.002586 CCCATTATGCGCGGAATAGAG 58.997 52.381 3.18 0.00 0.00 2.43
474 475 1.346395 ACCCATTATGCGCGGAATAGA 59.654 47.619 3.18 0.00 0.00 1.98
475 476 1.464608 CACCCATTATGCGCGGAATAG 59.535 52.381 3.18 2.65 0.00 1.73
476 477 1.518325 CACCCATTATGCGCGGAATA 58.482 50.000 3.18 0.00 0.00 1.75
477 478 1.795170 GCACCCATTATGCGCGGAAT 61.795 55.000 3.18 1.17 32.45 3.01
478 479 2.477176 GCACCCATTATGCGCGGAA 61.477 57.895 3.18 0.00 32.45 4.30
479 480 2.899838 GCACCCATTATGCGCGGA 60.900 61.111 8.83 5.00 32.45 5.54
480 481 3.185082 CTGCACCCATTATGCGCGG 62.185 63.158 8.83 0.00 46.49 6.46
481 482 2.328989 CTGCACCCATTATGCGCG 59.671 61.111 0.00 0.00 46.49 6.86
482 483 2.026590 GCTGCACCCATTATGCGC 59.973 61.111 0.00 0.00 46.49 6.09
483 484 2.328989 CGCTGCACCCATTATGCG 59.671 61.111 0.00 0.00 46.49 4.73
484 485 1.823470 TCCGCTGCACCCATTATGC 60.823 57.895 0.00 0.00 43.68 3.14
485 486 0.747644 TGTCCGCTGCACCCATTATG 60.748 55.000 0.00 0.00 0.00 1.90
486 487 0.183492 ATGTCCGCTGCACCCATTAT 59.817 50.000 0.00 0.00 0.00 1.28
487 488 0.747644 CATGTCCGCTGCACCCATTA 60.748 55.000 0.00 0.00 0.00 1.90
488 489 2.048023 CATGTCCGCTGCACCCATT 61.048 57.895 0.00 0.00 0.00 3.16
489 490 2.438975 CATGTCCGCTGCACCCAT 60.439 61.111 0.00 0.00 0.00 4.00
495 496 2.162754 GCATTTGCATGTCCGCTGC 61.163 57.895 0.00 0.00 41.59 5.25
496 497 0.734309 TAGCATTTGCATGTCCGCTG 59.266 50.000 5.20 0.00 45.16 5.18
497 498 1.133025 GTTAGCATTTGCATGTCCGCT 59.867 47.619 5.20 0.00 45.16 5.52
498 499 1.548986 GTTAGCATTTGCATGTCCGC 58.451 50.000 5.20 0.00 45.16 5.54
499 500 1.745087 AGGTTAGCATTTGCATGTCCG 59.255 47.619 5.20 0.00 45.16 4.79
500 501 3.874392 AAGGTTAGCATTTGCATGTCC 57.126 42.857 5.20 2.26 45.16 4.02
513 514 1.027357 TCGCTACGGGCTAAGGTTAG 58.973 55.000 1.54 0.00 39.13 2.34
514 515 0.740737 GTCGCTACGGGCTAAGGTTA 59.259 55.000 1.54 0.00 39.13 2.85
515 516 0.969409 AGTCGCTACGGGCTAAGGTT 60.969 55.000 1.54 0.00 39.13 3.50
516 517 1.379576 AGTCGCTACGGGCTAAGGT 60.380 57.895 1.54 0.00 39.13 3.50
517 518 1.065928 CAGTCGCTACGGGCTAAGG 59.934 63.158 1.54 0.00 39.13 2.69
518 519 0.525668 CACAGTCGCTACGGGCTAAG 60.526 60.000 1.54 0.00 39.13 2.18
519 520 1.246056 ACACAGTCGCTACGGGCTAA 61.246 55.000 1.54 0.00 39.13 3.09
520 521 1.676635 ACACAGTCGCTACGGGCTA 60.677 57.895 1.54 0.00 39.13 3.93
521 522 2.989824 ACACAGTCGCTACGGGCT 60.990 61.111 1.54 0.00 39.13 5.19
522 523 2.809601 CACACAGTCGCTACGGGC 60.810 66.667 0.00 0.00 37.64 6.13
523 524 2.126071 CCACACAGTCGCTACGGG 60.126 66.667 0.00 0.00 0.00 5.28
524 525 2.809601 GCCACACAGTCGCTACGG 60.810 66.667 0.00 0.00 0.00 4.02
525 526 3.172575 CGCCACACAGTCGCTACG 61.173 66.667 0.00 0.00 0.00 3.51
526 527 3.479269 GCGCCACACAGTCGCTAC 61.479 66.667 0.00 0.00 44.79 3.58
531 532 4.664677 ACGAGGCGCCACACAGTC 62.665 66.667 31.54 15.45 0.00 3.51
532 533 3.750373 AAACGAGGCGCCACACAGT 62.750 57.895 31.54 17.28 0.00 3.55
533 534 2.972505 AAACGAGGCGCCACACAG 60.973 61.111 31.54 16.59 0.00 3.66
534 535 3.276091 CAAACGAGGCGCCACACA 61.276 61.111 31.54 0.00 0.00 3.72
535 536 4.683334 GCAAACGAGGCGCCACAC 62.683 66.667 31.54 18.19 0.00 3.82
536 537 4.927782 AGCAAACGAGGCGCCACA 62.928 61.111 31.54 0.00 36.08 4.17
537 538 4.389576 CAGCAAACGAGGCGCCAC 62.390 66.667 31.54 23.03 36.08 5.01
543 544 3.058160 CTGGGCCAGCAAACGAGG 61.058 66.667 22.68 0.00 0.00 4.63
544 545 2.463589 TACCTGGGCCAGCAAACGAG 62.464 60.000 28.51 14.69 0.00 4.18
545 546 1.847798 ATACCTGGGCCAGCAAACGA 61.848 55.000 28.51 8.71 0.00 3.85
546 547 1.378514 ATACCTGGGCCAGCAAACG 60.379 57.895 28.51 16.18 0.00 3.60
547 548 0.611896 ACATACCTGGGCCAGCAAAC 60.612 55.000 28.51 0.00 0.00 2.93
548 549 0.114168 AACATACCTGGGCCAGCAAA 59.886 50.000 28.51 15.08 0.00 3.68
549 550 0.114168 AAACATACCTGGGCCAGCAA 59.886 50.000 28.51 17.71 0.00 3.91
550 551 0.995803 TAAACATACCTGGGCCAGCA 59.004 50.000 28.51 17.75 0.00 4.41
551 552 1.064685 ACTAAACATACCTGGGCCAGC 60.065 52.381 28.51 0.00 0.00 4.85
552 553 3.279434 GAACTAAACATACCTGGGCCAG 58.721 50.000 27.04 27.04 0.00 4.85
553 554 2.025699 GGAACTAAACATACCTGGGCCA 60.026 50.000 5.85 5.85 0.00 5.36
554 555 2.025699 TGGAACTAAACATACCTGGGCC 60.026 50.000 0.00 0.00 0.00 5.80
555 556 3.359695 TGGAACTAAACATACCTGGGC 57.640 47.619 0.00 0.00 0.00 5.36
556 557 5.394115 GCAAATGGAACTAAACATACCTGGG 60.394 44.000 0.00 0.00 0.00 4.45
557 558 5.418840 AGCAAATGGAACTAAACATACCTGG 59.581 40.000 0.00 0.00 0.00 4.45
558 559 6.404734 GGAGCAAATGGAACTAAACATACCTG 60.405 42.308 0.00 0.00 0.00 4.00
559 560 5.652452 GGAGCAAATGGAACTAAACATACCT 59.348 40.000 0.00 0.00 0.00 3.08
560 561 5.417580 TGGAGCAAATGGAACTAAACATACC 59.582 40.000 0.00 0.00 0.00 2.73
561 562 6.322491 GTGGAGCAAATGGAACTAAACATAC 58.678 40.000 0.00 0.00 0.00 2.39
562 563 5.417580 GGTGGAGCAAATGGAACTAAACATA 59.582 40.000 0.00 0.00 0.00 2.29
563 564 4.220602 GGTGGAGCAAATGGAACTAAACAT 59.779 41.667 0.00 0.00 0.00 2.71
564 565 3.572255 GGTGGAGCAAATGGAACTAAACA 59.428 43.478 0.00 0.00 0.00 2.83
565 566 3.572255 TGGTGGAGCAAATGGAACTAAAC 59.428 43.478 0.00 0.00 0.00 2.01
566 567 3.838565 TGGTGGAGCAAATGGAACTAAA 58.161 40.909 0.00 0.00 0.00 1.85
567 568 3.517296 TGGTGGAGCAAATGGAACTAA 57.483 42.857 0.00 0.00 0.00 2.24
568 569 3.266772 AGATGGTGGAGCAAATGGAACTA 59.733 43.478 0.00 0.00 0.00 2.24
569 570 2.042162 AGATGGTGGAGCAAATGGAACT 59.958 45.455 0.00 0.00 0.00 3.01
570 571 2.424956 GAGATGGTGGAGCAAATGGAAC 59.575 50.000 0.00 0.00 0.00 3.62
571 572 2.621407 GGAGATGGTGGAGCAAATGGAA 60.621 50.000 0.00 0.00 0.00 3.53
572 573 1.064463 GGAGATGGTGGAGCAAATGGA 60.064 52.381 0.00 0.00 0.00 3.41
573 574 1.396653 GGAGATGGTGGAGCAAATGG 58.603 55.000 0.00 0.00 0.00 3.16
574 575 1.019673 CGGAGATGGTGGAGCAAATG 58.980 55.000 0.00 0.00 0.00 2.32
575 576 0.749454 GCGGAGATGGTGGAGCAAAT 60.749 55.000 0.00 0.00 0.00 2.32
576 577 1.377202 GCGGAGATGGTGGAGCAAA 60.377 57.895 0.00 0.00 0.00 3.68
577 578 2.268920 GCGGAGATGGTGGAGCAA 59.731 61.111 0.00 0.00 0.00 3.91
578 579 3.785859 GGCGGAGATGGTGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
579 580 4.899239 CGGCGGAGATGGTGGAGC 62.899 72.222 0.00 0.00 0.00 4.70
580 581 2.076622 CTACGGCGGAGATGGTGGAG 62.077 65.000 15.64 0.00 0.00 3.86
581 582 2.043752 TACGGCGGAGATGGTGGA 60.044 61.111 13.24 0.00 0.00 4.02
582 583 2.417516 CTACGGCGGAGATGGTGG 59.582 66.667 15.64 0.00 0.00 4.61
583 584 2.279517 GCTACGGCGGAGATGGTG 60.280 66.667 26.08 0.00 0.00 4.17
584 585 3.537874 GGCTACGGCGGAGATGGT 61.538 66.667 26.08 0.00 39.81 3.55
585 586 3.536917 TGGCTACGGCGGAGATGG 61.537 66.667 26.08 0.00 39.81 3.51
586 587 2.279517 GTGGCTACGGCGGAGATG 60.280 66.667 26.08 0.00 39.81 2.90
587 588 2.088674 GATGTGGCTACGGCGGAGAT 62.089 60.000 26.08 7.10 39.81 2.75
588 589 2.758327 ATGTGGCTACGGCGGAGA 60.758 61.111 26.08 0.88 39.81 3.71
589 590 2.279517 GATGTGGCTACGGCGGAG 60.280 66.667 16.49 16.49 39.81 4.63
590 591 2.914756 TAGGATGTGGCTACGGCGGA 62.915 60.000 13.24 0.00 39.81 5.54
591 592 2.495409 TAGGATGTGGCTACGGCGG 61.495 63.158 13.24 0.00 39.81 6.13
592 593 1.299926 GTAGGATGTGGCTACGGCG 60.300 63.158 4.80 4.80 39.81 6.46
593 594 1.325355 TAGTAGGATGTGGCTACGGC 58.675 55.000 0.00 0.00 37.82 5.68
594 595 5.916661 AATATAGTAGGATGTGGCTACGG 57.083 43.478 0.00 0.00 0.00 4.02
595 596 7.061905 CGAAAAATATAGTAGGATGTGGCTACG 59.938 40.741 0.00 0.00 0.00 3.51
596 597 7.331193 CCGAAAAATATAGTAGGATGTGGCTAC 59.669 40.741 0.00 0.00 0.00 3.58
597 598 7.233962 TCCGAAAAATATAGTAGGATGTGGCTA 59.766 37.037 0.00 0.00 0.00 3.93
598 599 6.042781 TCCGAAAAATATAGTAGGATGTGGCT 59.957 38.462 0.00 0.00 0.00 4.75
599 600 6.228258 TCCGAAAAATATAGTAGGATGTGGC 58.772 40.000 0.00 0.00 0.00 5.01
600 601 7.667557 TCTCCGAAAAATATAGTAGGATGTGG 58.332 38.462 0.00 0.00 0.00 4.17
601 602 8.979574 GTTCTCCGAAAAATATAGTAGGATGTG 58.020 37.037 0.00 0.00 0.00 3.21
602 603 8.148999 GGTTCTCCGAAAAATATAGTAGGATGT 58.851 37.037 0.00 0.00 0.00 3.06
603 604 8.148351 TGGTTCTCCGAAAAATATAGTAGGATG 58.852 37.037 0.00 0.00 36.30 3.51
604 605 8.258850 TGGTTCTCCGAAAAATATAGTAGGAT 57.741 34.615 0.00 0.00 36.30 3.24
605 606 7.664552 TGGTTCTCCGAAAAATATAGTAGGA 57.335 36.000 0.00 0.00 36.30 2.94
606 607 8.904099 AATGGTTCTCCGAAAAATATAGTAGG 57.096 34.615 0.00 0.00 36.30 3.18
815 816 9.311916 CATTTTCTAAAATCCCGCAATTATTGA 57.688 29.630 9.36 0.00 36.52 2.57
816 817 9.097257 ACATTTTCTAAAATCCCGCAATTATTG 57.903 29.630 0.00 0.00 36.52 1.90
817 818 9.665719 AACATTTTCTAAAATCCCGCAATTATT 57.334 25.926 0.00 0.00 36.52 1.40
818 819 9.313118 GAACATTTTCTAAAATCCCGCAATTAT 57.687 29.630 0.00 0.00 36.52 1.28
819 820 7.762159 GGAACATTTTCTAAAATCCCGCAATTA 59.238 33.333 0.00 0.00 36.52 1.40
820 821 6.593770 GGAACATTTTCTAAAATCCCGCAATT 59.406 34.615 0.00 0.00 36.52 2.32
821 822 6.106003 GGAACATTTTCTAAAATCCCGCAAT 58.894 36.000 0.00 0.00 36.52 3.56
822 823 5.474825 GGAACATTTTCTAAAATCCCGCAA 58.525 37.500 0.00 0.00 36.52 4.85
823 824 4.081917 GGGAACATTTTCTAAAATCCCGCA 60.082 41.667 8.77 0.00 35.92 5.69
824 825 4.081917 TGGGAACATTTTCTAAAATCCCGC 60.082 41.667 15.60 9.28 43.17 6.13
825 826 5.652994 TGGGAACATTTTCTAAAATCCCG 57.347 39.130 15.60 3.07 43.17 5.14
826 827 8.862325 AATTTGGGAACATTTTCTAAAATCCC 57.138 30.769 14.48 14.48 41.73 3.85
856 857 9.530633 GGACTGAACATCTACGATAATACTTTT 57.469 33.333 0.00 0.00 0.00 2.27
857 858 8.692710 TGGACTGAACATCTACGATAATACTTT 58.307 33.333 0.00 0.00 0.00 2.66
858 859 8.234136 TGGACTGAACATCTACGATAATACTT 57.766 34.615 0.00 0.00 0.00 2.24
859 860 7.818997 TGGACTGAACATCTACGATAATACT 57.181 36.000 0.00 0.00 0.00 2.12
860 861 9.557338 GTATGGACTGAACATCTACGATAATAC 57.443 37.037 0.00 0.00 0.00 1.89
861 862 9.516546 AGTATGGACTGAACATCTACGATAATA 57.483 33.333 0.00 0.00 33.41 0.98
862 863 8.410673 AGTATGGACTGAACATCTACGATAAT 57.589 34.615 0.00 0.00 33.41 1.28
863 864 7.818997 AGTATGGACTGAACATCTACGATAA 57.181 36.000 0.00 0.00 33.41 1.75
864 865 8.781196 GTTAGTATGGACTGAACATCTACGATA 58.219 37.037 0.00 0.00 36.28 2.92
865 866 7.255520 GGTTAGTATGGACTGAACATCTACGAT 60.256 40.741 0.00 0.00 36.28 3.73
866 867 6.039047 GGTTAGTATGGACTGAACATCTACGA 59.961 42.308 0.00 0.00 36.28 3.43
867 868 6.207213 GGTTAGTATGGACTGAACATCTACG 58.793 44.000 0.00 0.00 36.28 3.51
868 869 6.097839 TGGGTTAGTATGGACTGAACATCTAC 59.902 42.308 0.00 0.00 36.28 2.59
869 870 6.199376 TGGGTTAGTATGGACTGAACATCTA 58.801 40.000 0.00 0.00 36.28 1.98
870 871 5.030147 TGGGTTAGTATGGACTGAACATCT 58.970 41.667 0.00 0.00 36.28 2.90
875 876 3.780294 AGCATGGGTTAGTATGGACTGAA 59.220 43.478 0.00 0.00 36.28 3.02
882 883 3.900601 AGAGGAGAGCATGGGTTAGTATG 59.099 47.826 0.00 0.00 0.00 2.39
884 885 3.689872 AGAGGAGAGCATGGGTTAGTA 57.310 47.619 0.00 0.00 0.00 1.82
885 886 2.559381 AGAGGAGAGCATGGGTTAGT 57.441 50.000 0.00 0.00 0.00 2.24
886 887 3.922171 AAAGAGGAGAGCATGGGTTAG 57.078 47.619 0.00 0.00 0.00 2.34
887 888 4.042809 TGAAAAAGAGGAGAGCATGGGTTA 59.957 41.667 0.00 0.00 0.00 2.85
888 889 3.181429 TGAAAAAGAGGAGAGCATGGGTT 60.181 43.478 0.00 0.00 0.00 4.11
889 890 2.376518 TGAAAAAGAGGAGAGCATGGGT 59.623 45.455 0.00 0.00 0.00 4.51
890 891 3.015327 CTGAAAAAGAGGAGAGCATGGG 58.985 50.000 0.00 0.00 0.00 4.00
912 913 2.784380 CAGCTAGCTACGAATCGACAAC 59.216 50.000 18.86 0.00 0.00 3.32
922 923 4.092771 TGACAGTAAACAGCTAGCTACG 57.907 45.455 18.86 8.88 0.00 3.51
929 930 2.620251 TGCACTGACAGTAAACAGCT 57.380 45.000 8.02 0.00 37.61 4.24
950 951 1.714794 CGTGGAAGACAGGTTGCTAG 58.285 55.000 0.00 0.00 0.00 3.42
951 952 0.320421 GCGTGGAAGACAGGTTGCTA 60.320 55.000 0.00 0.00 37.30 3.49
958 959 1.301244 AGCTGTGCGTGGAAGACAG 60.301 57.895 0.00 0.00 40.14 3.51
959 960 1.595109 CAGCTGTGCGTGGAAGACA 60.595 57.895 5.25 0.00 0.00 3.41
960 961 1.300931 TCAGCTGTGCGTGGAAGAC 60.301 57.895 14.67 0.00 0.00 3.01
961 962 1.300931 GTCAGCTGTGCGTGGAAGA 60.301 57.895 14.67 0.00 0.00 2.87
963 964 1.595109 CAGTCAGCTGTGCGTGGAA 60.595 57.895 14.67 0.00 37.92 3.53
973 974 1.610086 AGAGCTCAGCCAGTCAGCT 60.610 57.895 17.77 0.00 46.42 4.24
975 976 0.173935 CTCAGAGCTCAGCCAGTCAG 59.826 60.000 17.77 0.00 0.00 3.51
984 985 1.664873 GCATGCAATCTCAGAGCTCA 58.335 50.000 17.77 0.00 0.00 4.26
1003 1004 4.864334 GAGTGCCGCCTCCATGGG 62.864 72.222 13.02 2.26 36.00 4.00
1167 1168 2.249743 AGGATCCTCCTCCTCAGACATT 59.750 50.000 9.02 0.00 45.66 2.71
1221 1222 3.030291 CAGGTCATAGGACAGCTCTCTT 58.970 50.000 10.08 0.00 46.17 2.85
1222 1223 2.665165 CAGGTCATAGGACAGCTCTCT 58.335 52.381 10.08 0.00 46.17 3.10
1278 1279 1.864711 TCTGGCTTTTCGTCTTTGTCG 59.135 47.619 0.00 0.00 0.00 4.35
1314 1315 8.748412 CCCAACTTCCATAGTGAATTTTTGATA 58.252 33.333 0.00 0.00 37.12 2.15
1323 1324 3.913799 TCTTCCCCAACTTCCATAGTGAA 59.086 43.478 0.00 0.00 37.12 3.18
1330 1331 2.041620 CCTTCATCTTCCCCAACTTCCA 59.958 50.000 0.00 0.00 0.00 3.53
1433 1434 3.131933 CGTCTTGGAGAAGGTCTCATGAT 59.868 47.826 7.52 0.00 45.12 2.45
1546 1547 8.306313 TGAACATCCTCTTCTGTTAATAGCTA 57.694 34.615 0.00 0.00 35.80 3.32
1551 1552 6.421485 AGCATGAACATCCTCTTCTGTTAAT 58.579 36.000 0.00 0.00 35.80 1.40
1656 1669 5.643421 ATTGTCCCTTGAGCTCTTGATAT 57.357 39.130 16.19 2.26 0.00 1.63
1671 1684 1.578583 CCCGACAATCGTATTGTCCC 58.421 55.000 23.19 10.12 44.29 4.46
1683 1696 0.458889 CCGATACGAAAGCCCGACAA 60.459 55.000 0.00 0.00 0.00 3.18
1687 1700 0.648958 GAAACCGATACGAAAGCCCG 59.351 55.000 0.00 0.00 0.00 6.13
1717 1730 6.950842 TGGTTCTCAAGATAGTCATCATGTT 58.049 36.000 0.00 0.00 32.80 2.71
1774 1787 0.245813 GTACTCCCCACTTCCGTGTC 59.754 60.000 0.00 0.00 39.55 3.67
1793 1806 1.933181 TCTTGCTGACGAGTTGTTGTG 59.067 47.619 0.00 0.00 0.00 3.33
1817 1830 5.368989 ACCTTTTGTCTTGTAGGAACTCAG 58.631 41.667 0.00 0.00 41.75 3.35
1821 1834 6.148976 GGATGTACCTTTTGTCTTGTAGGAAC 59.851 42.308 0.00 0.00 35.41 3.62
2042 2225 1.573857 TGTCATGGGGCTCTACTCCTA 59.426 52.381 0.00 0.00 0.00 2.94
2076 2259 7.299246 AGAAAAGTGAGCCAAGTTAGTACTA 57.701 36.000 0.00 0.00 33.17 1.82
2126 2309 7.767659 TGCACAGATAATTATAGATCAGGATGC 59.232 37.037 0.00 0.32 34.76 3.91
2154 2337 6.152323 ACTTGCAAAATCAGTCATGAGCTAAT 59.848 34.615 0.00 0.00 39.29 1.73
2158 2341 3.918591 CACTTGCAAAATCAGTCATGAGC 59.081 43.478 0.00 0.00 39.29 4.26
2210 2394 5.751243 AAAGTAATGTGTGTGACCACTTC 57.249 39.130 1.62 0.00 42.34 3.01
2262 2469 4.404394 TCAAGGCACGATTAATCTGGTCTA 59.596 41.667 13.45 0.00 0.00 2.59
2272 2479 5.127194 AGAAGAGTGTATCAAGGCACGATTA 59.873 40.000 0.00 0.00 40.26 1.75
2273 2480 3.895232 AGAGTGTATCAAGGCACGATT 57.105 42.857 0.00 0.00 40.26 3.34
2310 2517 3.666253 CGTTTGGTTGGCGGGACC 61.666 66.667 0.00 0.00 37.69 4.46
2338 2545 0.739561 AACGGAGCTGGTCTCGATAC 59.260 55.000 19.33 0.00 42.82 2.24
2376 2583 2.354303 CGTGTAGGGCAACAATAGTGGA 60.354 50.000 0.00 0.00 39.74 4.02
2444 2660 7.543359 TTAGGCTCACTTAACCTAGTAAACA 57.457 36.000 0.00 0.00 37.36 2.83
2506 2722 5.751243 ATATAATGTGTGTTTTCCCTCGC 57.249 39.130 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.