Multiple sequence alignment - TraesCS6B01G463200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G463200 chr6B 100.000 2938 0 0 1 2938 715757097 715760034 0.000000e+00 5426.0
1 TraesCS6B01G463200 chr6B 94.340 53 3 0 2809 2861 81012144 81012092 6.750000e-12 82.4
2 TraesCS6B01G463200 chr6D 91.965 1618 108 8 849 2466 469618617 469620212 0.000000e+00 2248.0
3 TraesCS6B01G463200 chr6D 95.479 376 15 2 478 852 469618152 469618526 1.510000e-167 599.0
4 TraesCS6B01G463200 chr6D 89.130 368 17 8 2466 2811 469620289 469620655 1.250000e-118 436.0
5 TraesCS6B01G463200 chr6D 88.852 305 9 5 1 281 469616050 469616353 4.660000e-93 351.0
6 TraesCS6B01G463200 chr6D 89.474 114 9 1 348 458 469617967 469618080 1.100000e-29 141.0
7 TraesCS6B01G463200 chr6D 98.701 77 1 0 2862 2938 469620661 469620737 1.420000e-28 137.0
8 TraesCS6B01G463200 chr6A 91.755 1504 105 7 849 2351 614670331 614671816 0.000000e+00 2073.0
9 TraesCS6B01G463200 chr6A 97.600 375 8 1 478 852 614669866 614670239 2.470000e-180 641.0
10 TraesCS6B01G463200 chr6A 88.811 286 7 7 1 262 614668018 614668302 7.850000e-86 327.0
11 TraesCS6B01G463200 chr6A 89.474 114 9 1 348 458 614669681 614669794 1.100000e-29 141.0
12 TraesCS6B01G463200 chr6A 96.429 84 1 1 2349 2432 614672054 614672135 1.420000e-28 137.0
13 TraesCS6B01G463200 chrUn 92.333 613 45 2 1039 1650 368393329 368392718 0.000000e+00 870.0
14 TraesCS6B01G463200 chrUn 96.267 375 13 1 478 852 75390602 75390229 5.380000e-172 614.0
15 TraesCS6B01G463200 chrUn 88.811 286 7 5 1 262 74880577 74880861 7.850000e-86 327.0
16 TraesCS6B01G463200 chrUn 88.596 114 10 1 348 458 74882490 74882603 5.110000e-28 135.0
17 TraesCS6B01G463200 chr4D 96.552 58 1 1 2809 2866 285902535 285902591 8.670000e-16 95.3
18 TraesCS6B01G463200 chr3D 98.148 54 1 0 2808 2861 286874645 286874592 8.670000e-16 95.3
19 TraesCS6B01G463200 chr3A 98.148 54 1 0 2808 2861 55506805 55506858 8.670000e-16 95.3
20 TraesCS6B01G463200 chr3A 92.063 63 3 2 2809 2871 503184209 503184149 1.450000e-13 87.9
21 TraesCS6B01G463200 chr2A 93.548 62 2 2 2807 2867 710925062 710925002 1.120000e-14 91.6
22 TraesCS6B01G463200 chr7B 90.141 71 4 3 2794 2861 625870461 625870391 4.030000e-14 89.8
23 TraesCS6B01G463200 chr5A 94.545 55 3 0 2807 2861 436878047 436877993 5.220000e-13 86.1
24 TraesCS6B01G463200 chr5B 87.671 73 6 3 2789 2861 377347847 377347916 6.750000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G463200 chr6B 715757097 715760034 2937 False 5426.0 5426 100.000000 1 2938 1 chr6B.!!$F1 2937
1 TraesCS6B01G463200 chr6D 469616050 469620737 4687 False 652.0 2248 92.266833 1 2938 6 chr6D.!!$F1 2937
2 TraesCS6B01G463200 chr6A 614668018 614672135 4117 False 663.8 2073 92.813800 1 2432 5 chr6A.!!$F1 2431
3 TraesCS6B01G463200 chrUn 368392718 368393329 611 True 870.0 870 92.333000 1039 1650 1 chrUn.!!$R2 611
4 TraesCS6B01G463200 chrUn 74880577 74882603 2026 False 231.0 327 88.703500 1 458 2 chrUn.!!$F1 457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 2098 0.179119 CATTTGGGCAGCTAGCTTGC 60.179 55.0 16.46 20.7 44.79 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 3796 0.250467 GGCCAACAGAGCAGAGAACA 60.25 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.674962 GGATCCTCATGTTCAAGCTGC 59.325 52.381 3.84 0.00 0.00 5.25
30 31 2.362736 GATCCTCATGTTCAAGCTGCA 58.637 47.619 1.02 0.00 0.00 4.41
159 184 6.583562 ACTTGCCATAGGTAGTAAACTGATC 58.416 40.000 0.00 0.00 0.00 2.92
205 230 7.700022 ACCCATAGAGTTATTAGTATCGTCC 57.300 40.000 0.00 0.00 0.00 4.79
285 1889 4.349365 GGGTTCCCCAATTTGATTGTAGA 58.651 43.478 0.00 0.00 44.65 2.59
286 1890 4.775253 GGGTTCCCCAATTTGATTGTAGAA 59.225 41.667 0.00 0.81 44.65 2.10
290 1894 7.315890 GTTCCCCAATTTGATTGTAGAAAGAG 58.684 38.462 0.00 0.00 38.59 2.85
295 1899 6.071728 CCAATTTGATTGTAGAAAGAGCCAGT 60.072 38.462 0.00 0.00 38.59 4.00
320 1924 5.068460 AGAGTAGCAGTTATTAGCTGTGAGG 59.932 44.000 9.00 0.00 41.97 3.86
321 1925 4.712337 AGTAGCAGTTATTAGCTGTGAGGT 59.288 41.667 9.00 0.00 41.97 3.85
322 1926 4.559862 AGCAGTTATTAGCTGTGAGGTT 57.440 40.909 9.00 0.00 40.13 3.50
324 1928 3.623510 GCAGTTATTAGCTGTGAGGTTCC 59.376 47.826 9.00 0.00 36.42 3.62
325 1929 4.832248 CAGTTATTAGCTGTGAGGTTCCA 58.168 43.478 0.00 0.00 0.00 3.53
326 1930 4.872691 CAGTTATTAGCTGTGAGGTTCCAG 59.127 45.833 0.00 0.00 0.00 3.86
327 1931 4.080863 AGTTATTAGCTGTGAGGTTCCAGG 60.081 45.833 0.00 0.00 0.00 4.45
328 1932 1.729586 TTAGCTGTGAGGTTCCAGGT 58.270 50.000 0.00 0.00 41.81 4.00
329 1933 1.729586 TAGCTGTGAGGTTCCAGGTT 58.270 50.000 0.00 0.00 39.83 3.50
330 1934 1.729586 AGCTGTGAGGTTCCAGGTTA 58.270 50.000 0.00 0.00 36.05 2.85
331 1935 2.269940 AGCTGTGAGGTTCCAGGTTAT 58.730 47.619 0.00 0.00 36.05 1.89
332 1936 3.450904 AGCTGTGAGGTTCCAGGTTATA 58.549 45.455 0.00 0.00 36.05 0.98
333 1937 3.844211 AGCTGTGAGGTTCCAGGTTATAA 59.156 43.478 0.00 0.00 36.05 0.98
334 1938 3.939592 GCTGTGAGGTTCCAGGTTATAAC 59.060 47.826 7.09 7.09 0.00 1.89
335 1939 4.181578 CTGTGAGGTTCCAGGTTATAACG 58.818 47.826 9.46 0.00 0.00 3.18
336 1940 3.579586 TGTGAGGTTCCAGGTTATAACGT 59.420 43.478 9.46 7.25 0.00 3.99
337 1941 4.179298 GTGAGGTTCCAGGTTATAACGTC 58.821 47.826 7.83 5.04 38.09 4.34
338 1942 4.081807 GTGAGGTTCCAGGTTATAACGTCT 60.082 45.833 7.83 2.50 38.30 4.18
339 1943 4.529377 TGAGGTTCCAGGTTATAACGTCTT 59.471 41.667 7.83 0.00 38.30 3.01
340 1944 4.828829 AGGTTCCAGGTTATAACGTCTTG 58.171 43.478 7.83 4.85 0.00 3.02
341 1945 3.937079 GGTTCCAGGTTATAACGTCTTGG 59.063 47.826 7.83 12.49 0.00 3.61
342 1946 3.255969 TCCAGGTTATAACGTCTTGGC 57.744 47.619 7.83 0.00 0.00 4.52
343 1947 2.093341 TCCAGGTTATAACGTCTTGGCC 60.093 50.000 7.83 0.00 0.00 5.36
344 1948 2.355310 CCAGGTTATAACGTCTTGGCCA 60.355 50.000 0.00 0.00 0.00 5.36
345 1949 3.541632 CAGGTTATAACGTCTTGGCCAT 58.458 45.455 6.09 0.00 0.00 4.40
346 1950 4.443739 CCAGGTTATAACGTCTTGGCCATA 60.444 45.833 6.09 0.00 0.00 2.74
347 1951 5.120399 CAGGTTATAACGTCTTGGCCATAA 58.880 41.667 6.09 0.00 0.00 1.90
348 1952 5.007332 CAGGTTATAACGTCTTGGCCATAAC 59.993 44.000 6.09 9.71 0.00 1.89
349 1953 4.274214 GGTTATAACGTCTTGGCCATAACC 59.726 45.833 19.66 19.66 40.11 2.85
350 1954 2.406596 TAACGTCTTGGCCATAACCC 57.593 50.000 6.09 0.00 0.00 4.11
351 1955 0.402504 AACGTCTTGGCCATAACCCA 59.597 50.000 6.09 0.00 0.00 4.51
352 1956 0.322187 ACGTCTTGGCCATAACCCAC 60.322 55.000 6.09 0.00 30.65 4.61
370 1974 2.225068 ACGTGAGTGGTGAGAACAAG 57.775 50.000 0.00 0.00 46.97 3.16
372 1976 0.861837 GTGAGTGGTGAGAACAAGCG 59.138 55.000 0.00 0.00 0.00 4.68
373 1977 0.249868 TGAGTGGTGAGAACAAGCGG 60.250 55.000 0.00 0.00 0.00 5.52
383 1987 3.190874 GAGAACAAGCGGTCTTATCCTG 58.809 50.000 0.00 0.00 0.00 3.86
396 2003 7.437748 CGGTCTTATCCTGATGAAAGAGTTAT 58.562 38.462 0.00 0.00 0.00 1.89
413 2020 5.698545 AGAGTTATATTGCGCCTCAGAATTC 59.301 40.000 4.18 0.00 0.00 2.17
414 2021 4.449068 AGTTATATTGCGCCTCAGAATTCG 59.551 41.667 4.18 0.00 0.00 3.34
473 2098 0.179119 CATTTGGGCAGCTAGCTTGC 60.179 55.000 16.46 20.70 44.79 4.01
476 2101 0.612732 TTGGGCAGCTAGCTTGCATT 60.613 50.000 28.39 0.00 44.79 3.56
483 2142 3.314635 GCAGCTAGCTTGCATTGTTATCT 59.685 43.478 24.94 0.00 41.15 1.98
489 2148 5.567138 AGCTTGCATTGTTATCTACCAAC 57.433 39.130 0.00 0.00 0.00 3.77
493 2152 6.494893 TTGCATTGTTATCTACCAACTGTC 57.505 37.500 0.00 0.00 0.00 3.51
523 2182 4.664677 AGCACAGGCACCGTCGTC 62.665 66.667 0.00 0.00 44.61 4.20
604 2264 0.523072 CATGTTGTGGCTGTACCTGC 59.477 55.000 0.00 0.00 40.22 4.85
763 2423 6.169419 TCTGATCTGTGTTTGAAATAAGCG 57.831 37.500 0.00 0.00 0.00 4.68
871 2626 6.949352 AGTAGCTGCTTGTTATATGCATTT 57.051 33.333 7.79 0.00 38.58 2.32
912 2667 1.264288 GACAAGCTTTGAACCTGACCG 59.736 52.381 0.00 0.00 0.00 4.79
987 2742 8.226819 TCAAGTACTAATCGATCTCAGATTGT 57.773 34.615 0.00 0.00 38.61 2.71
1025 2781 2.813754 CGAGGAGATCTAGCAGGAAGAG 59.186 54.545 0.00 0.00 0.00 2.85
1029 2785 5.466819 AGGAGATCTAGCAGGAAGAGAAAT 58.533 41.667 0.00 0.00 0.00 2.17
1030 2786 5.305128 AGGAGATCTAGCAGGAAGAGAAATG 59.695 44.000 0.00 0.00 0.00 2.32
1104 2860 0.955919 GGCTGCCACTTAAGTCGCTT 60.956 55.000 23.03 0.00 33.25 4.68
1138 2894 2.078914 GTCGACACGCACTGGTACG 61.079 63.158 11.55 0.00 0.00 3.67
1139 2895 2.253051 TCGACACGCACTGGTACGA 61.253 57.895 0.15 0.00 0.00 3.43
1162 2918 0.692476 CATCTCCCACCCTGAACACA 59.308 55.000 0.00 0.00 0.00 3.72
1215 2971 4.703897 TCTTCTTTGACACCGAAGACATT 58.296 39.130 10.17 0.00 41.31 2.71
1218 2974 2.920724 TTGACACCGAAGACATTGGA 57.079 45.000 0.00 0.00 0.00 3.53
1283 3039 3.539604 CACCTCAGATTGATCCCAGTTC 58.460 50.000 0.00 0.00 0.00 3.01
1534 3290 1.686355 TGTGTTGAAAGATTGGCGGT 58.314 45.000 0.00 0.00 0.00 5.68
1602 3358 1.153539 TCATGGAAAGTGGGTGGGAA 58.846 50.000 0.00 0.00 0.00 3.97
1614 3370 2.127708 GGGTGGGAATCTGATACCAGT 58.872 52.381 12.62 0.00 41.16 4.00
1621 3377 4.762251 GGGAATCTGATACCAGTATTTGCC 59.238 45.833 6.46 0.00 41.16 4.52
1622 3378 5.376625 GGAATCTGATACCAGTATTTGCCA 58.623 41.667 0.00 0.00 41.16 4.92
1623 3379 5.239525 GGAATCTGATACCAGTATTTGCCAC 59.760 44.000 0.00 0.00 41.16 5.01
1631 3387 2.884012 CCAGTATTTGCCACAACAGACA 59.116 45.455 0.00 0.00 0.00 3.41
1633 3389 4.022068 CCAGTATTTGCCACAACAGACATT 60.022 41.667 0.00 0.00 0.00 2.71
1653 3409 3.581024 TTGTTTCATCAAGGCATGCTC 57.419 42.857 18.92 7.89 0.00 4.26
1662 3418 2.633967 TCAAGGCATGCTCCATTTTGTT 59.366 40.909 18.92 0.00 0.00 2.83
1665 3421 3.434309 AGGCATGCTCCATTTTGTTAGT 58.566 40.909 18.92 0.00 0.00 2.24
1666 3422 3.834231 AGGCATGCTCCATTTTGTTAGTT 59.166 39.130 18.92 0.00 0.00 2.24
1667 3423 4.284234 AGGCATGCTCCATTTTGTTAGTTT 59.716 37.500 18.92 0.00 0.00 2.66
1715 3471 1.299939 GAGGGGAAGAAATGGAGGGT 58.700 55.000 0.00 0.00 0.00 4.34
1720 3476 4.079154 AGGGGAAGAAATGGAGGGTAATTC 60.079 45.833 0.00 0.00 0.00 2.17
1738 3494 1.673665 CCAGTGCCAGAAGGAGTGC 60.674 63.158 0.00 0.00 36.89 4.40
1745 3501 1.271379 GCCAGAAGGAGTGCAAAGGTA 60.271 52.381 0.00 0.00 36.89 3.08
1746 3502 2.619074 GCCAGAAGGAGTGCAAAGGTAT 60.619 50.000 0.00 0.00 36.89 2.73
1747 3503 3.012518 CCAGAAGGAGTGCAAAGGTATG 58.987 50.000 0.00 0.00 36.89 2.39
1748 3504 3.307691 CCAGAAGGAGTGCAAAGGTATGA 60.308 47.826 0.00 0.00 36.89 2.15
1749 3505 3.937706 CAGAAGGAGTGCAAAGGTATGAG 59.062 47.826 0.00 0.00 0.00 2.90
1750 3506 3.584848 AGAAGGAGTGCAAAGGTATGAGT 59.415 43.478 0.00 0.00 0.00 3.41
1751 3507 4.042187 AGAAGGAGTGCAAAGGTATGAGTT 59.958 41.667 0.00 0.00 0.00 3.01
1752 3508 4.373156 AGGAGTGCAAAGGTATGAGTTT 57.627 40.909 0.00 0.00 0.00 2.66
1753 3509 4.074970 AGGAGTGCAAAGGTATGAGTTTG 58.925 43.478 0.00 0.00 36.84 2.93
1764 3520 8.680903 CAAAGGTATGAGTTTGCTATTCTTGAT 58.319 33.333 0.00 0.00 0.00 2.57
1771 3527 7.394016 TGAGTTTGCTATTCTTGATCTTGGTA 58.606 34.615 0.00 0.00 0.00 3.25
1778 3534 7.500227 TGCTATTCTTGATCTTGGTATTCTTGG 59.500 37.037 0.00 0.00 0.00 3.61
1782 3538 5.186992 TCTTGATCTTGGTATTCTTGGTCGA 59.813 40.000 0.00 0.00 0.00 4.20
1788 3544 2.434336 TGGTATTCTTGGTCGATCCCAG 59.566 50.000 0.00 0.00 35.49 4.45
1837 3593 7.063074 ACACAGAGAATCGTTTTATAGTTTCCG 59.937 37.037 0.00 0.00 42.67 4.30
1849 3605 2.528041 AGTTTCCGTCTGGTGTCTTC 57.472 50.000 0.00 0.00 36.30 2.87
1854 3610 1.340248 TCCGTCTGGTGTCTTCAGAAC 59.660 52.381 0.00 0.00 42.13 3.01
1863 3619 6.211384 TCTGGTGTCTTCAGAACTATGATTCA 59.789 38.462 0.00 0.00 38.20 2.57
1888 3644 2.665185 GGACGCTGAAGCACCGTT 60.665 61.111 2.79 0.00 42.21 4.44
1892 3648 1.092921 ACGCTGAAGCACCGTTTGAA 61.093 50.000 2.79 0.00 42.21 2.69
1912 3668 6.201226 TGAACAATAACAAGTTGCTGAACA 57.799 33.333 1.81 0.30 34.17 3.18
1913 3669 6.625362 TGAACAATAACAAGTTGCTGAACAA 58.375 32.000 1.81 0.00 34.17 2.83
1914 3670 7.264221 TGAACAATAACAAGTTGCTGAACAAT 58.736 30.769 1.81 0.00 41.27 2.71
1916 3672 8.574196 AACAATAACAAGTTGCTGAACAATAC 57.426 30.769 1.81 0.00 41.27 1.89
1922 3678 5.238650 ACAAGTTGCTGAACAATACAGGTAC 59.761 40.000 1.81 0.00 41.27 3.34
1929 3685 6.154534 TGCTGAACAATACAGGTACAGTCTAT 59.845 38.462 0.00 0.00 36.09 1.98
1930 3686 6.477033 GCTGAACAATACAGGTACAGTCTATG 59.523 42.308 0.00 0.00 36.09 2.23
1931 3687 6.873997 TGAACAATACAGGTACAGTCTATGG 58.126 40.000 0.00 0.00 0.00 2.74
1940 3696 6.327626 ACAGGTACAGTCTATGGCTATGAATT 59.672 38.462 0.00 0.00 0.00 2.17
1943 3699 6.870965 GGTACAGTCTATGGCTATGAATTCTG 59.129 42.308 7.05 0.00 0.00 3.02
1945 3701 6.286758 ACAGTCTATGGCTATGAATTCTGTG 58.713 40.000 7.05 0.00 32.45 3.66
1946 3702 5.178996 CAGTCTATGGCTATGAATTCTGTGC 59.821 44.000 7.05 7.65 0.00 4.57
1953 3709 4.132336 GCTATGAATTCTGTGCCATCTCA 58.868 43.478 7.05 0.00 0.00 3.27
1983 3739 6.582636 TCCAGATCGTAGTTTGATTTGCTAT 58.417 36.000 0.00 0.00 29.21 2.97
1985 3741 6.258727 CCAGATCGTAGTTTGATTTGCTATGT 59.741 38.462 0.00 0.00 29.21 2.29
1991 3747 9.378551 TCGTAGTTTGATTTGCTATGTTAATCT 57.621 29.630 0.00 0.00 31.25 2.40
1995 3751 8.730680 AGTTTGATTTGCTATGTTAATCTTCGT 58.269 29.630 0.00 0.00 31.25 3.85
2001 3757 6.403333 TGCTATGTTAATCTTCGTGACAAC 57.597 37.500 0.00 0.00 0.00 3.32
2005 3761 6.612247 ATGTTAATCTTCGTGACAACACAA 57.388 33.333 0.00 0.00 46.20 3.33
2024 3780 1.586422 ATGATGGCGTATGACACTGC 58.414 50.000 0.00 0.00 34.45 4.40
2050 3806 1.589113 GAGGCTCGTGTTCTCTGCT 59.411 57.895 0.00 0.00 0.00 4.24
2053 3809 0.735632 GGCTCGTGTTCTCTGCTCTG 60.736 60.000 0.00 0.00 0.00 3.35
2058 3814 0.871057 GTGTTCTCTGCTCTGTTGGC 59.129 55.000 0.00 0.00 0.00 4.52
2073 3829 1.375853 TTGGCCGAGGCGATTTGATG 61.376 55.000 8.14 0.00 43.06 3.07
2079 3835 1.333524 CGAGGCGATTTGATGTCATGC 60.334 52.381 0.00 0.00 0.00 4.06
2152 3908 1.968493 TGCTCCTCGGTCTTGTAAACT 59.032 47.619 0.00 0.00 0.00 2.66
2250 4006 6.926272 AGCTCTACTTGTTAACTCAGAACTTG 59.074 38.462 7.22 0.00 0.00 3.16
2307 4063 7.231607 ACTATGTAGTTTTGTTTATCGTTGCG 58.768 34.615 0.00 0.00 31.13 4.85
2471 4542 1.436600 AGCAGCTGATATATGCACGC 58.563 50.000 20.43 0.00 42.45 5.34
2544 4615 5.044476 TGGATCCTTTGGGTGCTTAGAATTA 60.044 40.000 14.23 0.00 0.00 1.40
2550 4621 4.249638 TGGGTGCTTAGAATTATTGGCT 57.750 40.909 0.00 0.00 0.00 4.75
2553 4624 4.644685 GGGTGCTTAGAATTATTGGCTGAA 59.355 41.667 0.00 0.00 0.00 3.02
2558 4629 9.801873 GTGCTTAGAATTATTGGCTGAATTAAA 57.198 29.630 0.00 0.00 0.00 1.52
2643 4714 4.241590 CTCAGATGAGCAGTAAGGCTAG 57.758 50.000 0.00 0.00 45.99 3.42
2644 4715 3.636300 CTCAGATGAGCAGTAAGGCTAGT 59.364 47.826 0.00 0.00 45.99 2.57
2645 4716 4.793201 TCAGATGAGCAGTAAGGCTAGTA 58.207 43.478 0.00 0.00 45.99 1.82
2646 4717 4.824537 TCAGATGAGCAGTAAGGCTAGTAG 59.175 45.833 0.00 0.00 45.99 2.57
2647 4718 3.572255 AGATGAGCAGTAAGGCTAGTAGC 59.428 47.826 14.09 14.09 45.99 3.58
2779 4871 7.615365 ACATCAGCCAGGAAACAGAAATTATTA 59.385 33.333 0.00 0.00 0.00 0.98
2823 4915 7.455641 AACTGTAATATACTCTCTCCATCCG 57.544 40.000 0.00 0.00 0.00 4.18
2824 4916 5.946972 ACTGTAATATACTCTCTCCATCCGG 59.053 44.000 0.00 0.00 0.00 5.14
2825 4917 6.135819 TGTAATATACTCTCTCCATCCGGA 57.864 41.667 6.61 6.61 39.79 5.14
2826 4918 6.549242 TGTAATATACTCTCTCCATCCGGAA 58.451 40.000 9.01 0.00 42.21 4.30
2827 4919 7.008332 TGTAATATACTCTCTCCATCCGGAAA 58.992 38.462 9.01 0.00 42.21 3.13
2828 4920 7.674348 TGTAATATACTCTCTCCATCCGGAAAT 59.326 37.037 9.01 0.00 42.21 2.17
2829 4921 9.186837 GTAATATACTCTCTCCATCCGGAAATA 57.813 37.037 9.01 0.00 42.21 1.40
2830 4922 5.986501 ATACTCTCTCCATCCGGAAATAC 57.013 43.478 9.01 0.00 42.21 1.89
2831 4923 3.917300 ACTCTCTCCATCCGGAAATACT 58.083 45.455 9.01 0.00 42.21 2.12
2832 4924 4.290942 ACTCTCTCCATCCGGAAATACTT 58.709 43.478 9.01 0.00 42.21 2.24
2833 4925 4.100189 ACTCTCTCCATCCGGAAATACTTG 59.900 45.833 9.01 0.00 42.21 3.16
2834 4926 4.030913 TCTCTCCATCCGGAAATACTTGT 58.969 43.478 9.01 0.00 42.21 3.16
2835 4927 4.099573 TCTCTCCATCCGGAAATACTTGTC 59.900 45.833 9.01 0.00 42.21 3.18
2836 4928 3.772572 TCTCCATCCGGAAATACTTGTCA 59.227 43.478 9.01 0.00 42.21 3.58
2837 4929 4.408921 TCTCCATCCGGAAATACTTGTCAT 59.591 41.667 9.01 0.00 42.21 3.06
2838 4930 4.703897 TCCATCCGGAAATACTTGTCATC 58.296 43.478 9.01 0.00 38.83 2.92
2839 4931 4.163268 TCCATCCGGAAATACTTGTCATCA 59.837 41.667 9.01 0.00 38.83 3.07
2840 4932 4.881273 CCATCCGGAAATACTTGTCATCAA 59.119 41.667 9.01 0.00 0.00 2.57
2841 4933 5.356751 CCATCCGGAAATACTTGTCATCAAA 59.643 40.000 9.01 0.00 32.87 2.69
2842 4934 6.127758 CCATCCGGAAATACTTGTCATCAAAA 60.128 38.462 9.01 0.00 32.87 2.44
2843 4935 7.416664 CCATCCGGAAATACTTGTCATCAAAAT 60.417 37.037 9.01 0.00 32.87 1.82
2844 4936 6.851609 TCCGGAAATACTTGTCATCAAAATG 58.148 36.000 0.00 0.00 32.87 2.32
2845 4937 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
2846 4938 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
2847 4939 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
2848 4940 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
2854 4946 8.421249 ACTTGTCATCAAAATGGATAAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
2855 4947 8.526147 ACTTGTCATCAAAATGGATAAAAGGAG 58.474 33.333 0.00 0.00 33.42 3.69
2856 4948 8.648698 TTGTCATCAAAATGGATAAAAGGAGA 57.351 30.769 0.00 0.00 33.42 3.71
2857 4949 8.827832 TGTCATCAAAATGGATAAAAGGAGAT 57.172 30.769 0.00 0.00 33.42 2.75
2858 4950 8.689061 TGTCATCAAAATGGATAAAAGGAGATG 58.311 33.333 0.00 0.00 33.42 2.90
2859 4951 8.689972 GTCATCAAAATGGATAAAAGGAGATGT 58.310 33.333 0.00 0.00 33.42 3.06
2860 4952 9.919416 TCATCAAAATGGATAAAAGGAGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
2870 4962 9.953697 GGATAAAAGGAGATGTAGTATATAGCG 57.046 37.037 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.514441 CAGCTTGAACATGAGGATCCATAC 59.486 45.833 15.82 5.60 0.00 2.39
29 30 9.836076 CAGATGGCAACTGATAAACATATAATG 57.164 33.333 18.91 0.00 37.54 1.90
30 31 9.797642 TCAGATGGCAACTGATAAACATATAAT 57.202 29.630 21.80 0.00 39.10 1.28
159 184 1.273048 TGCAGCCAAACAAGCATAAGG 59.727 47.619 0.00 0.00 31.05 2.69
205 230 5.611128 ACATGATATAGCAGATAGGGCAG 57.389 43.478 0.00 0.00 0.00 4.85
285 1889 3.436243 ACTGCTACTCTACTGGCTCTTT 58.564 45.455 0.00 0.00 0.00 2.52
286 1890 3.094484 ACTGCTACTCTACTGGCTCTT 57.906 47.619 0.00 0.00 0.00 2.85
290 1894 5.010213 AGCTAATAACTGCTACTCTACTGGC 59.990 44.000 0.00 0.00 37.81 4.85
295 1899 6.263392 CCTCACAGCTAATAACTGCTACTCTA 59.737 42.308 0.00 0.00 38.79 2.43
320 1924 3.373130 GCCAAGACGTTATAACCTGGAAC 59.627 47.826 18.15 0.00 0.00 3.62
321 1925 3.602483 GCCAAGACGTTATAACCTGGAA 58.398 45.455 18.15 0.00 0.00 3.53
322 1926 2.093341 GGCCAAGACGTTATAACCTGGA 60.093 50.000 18.15 0.00 0.00 3.86
324 1928 2.980568 TGGCCAAGACGTTATAACCTG 58.019 47.619 0.61 0.00 0.00 4.00
325 1929 3.926058 ATGGCCAAGACGTTATAACCT 57.074 42.857 10.96 0.00 0.00 3.50
326 1930 4.274214 GGTTATGGCCAAGACGTTATAACC 59.726 45.833 19.66 19.66 41.28 2.85
327 1931 4.274214 GGGTTATGGCCAAGACGTTATAAC 59.726 45.833 10.96 11.32 32.85 1.89
328 1932 4.080469 TGGGTTATGGCCAAGACGTTATAA 60.080 41.667 10.96 0.00 0.00 0.98
329 1933 3.455177 TGGGTTATGGCCAAGACGTTATA 59.545 43.478 10.96 0.00 0.00 0.98
330 1934 2.240160 TGGGTTATGGCCAAGACGTTAT 59.760 45.455 10.96 0.00 0.00 1.89
331 1935 1.629353 TGGGTTATGGCCAAGACGTTA 59.371 47.619 10.96 0.00 0.00 3.18
332 1936 0.402504 TGGGTTATGGCCAAGACGTT 59.597 50.000 10.96 0.00 0.00 3.99
333 1937 0.322187 GTGGGTTATGGCCAAGACGT 60.322 55.000 10.96 0.00 0.00 4.34
334 1938 1.366111 CGTGGGTTATGGCCAAGACG 61.366 60.000 10.96 8.33 0.00 4.18
335 1939 0.322187 ACGTGGGTTATGGCCAAGAC 60.322 55.000 10.96 11.76 0.00 3.01
336 1940 0.322098 CACGTGGGTTATGGCCAAGA 60.322 55.000 10.96 0.00 0.00 3.02
337 1941 0.322098 TCACGTGGGTTATGGCCAAG 60.322 55.000 10.96 0.00 0.00 3.61
338 1942 0.322098 CTCACGTGGGTTATGGCCAA 60.322 55.000 10.96 0.00 0.00 4.52
339 1943 1.298340 CTCACGTGGGTTATGGCCA 59.702 57.895 17.00 8.56 0.00 5.36
340 1944 1.024579 CACTCACGTGGGTTATGGCC 61.025 60.000 20.89 0.00 37.50 5.36
341 1945 2.466867 CACTCACGTGGGTTATGGC 58.533 57.895 20.89 0.00 37.50 4.40
350 1954 1.860950 CTTGTTCTCACCACTCACGTG 59.139 52.381 9.94 9.94 40.89 4.49
351 1955 1.806623 GCTTGTTCTCACCACTCACGT 60.807 52.381 0.00 0.00 0.00 4.49
352 1956 0.861837 GCTTGTTCTCACCACTCACG 59.138 55.000 0.00 0.00 0.00 4.35
370 1974 4.054671 CTCTTTCATCAGGATAAGACCGC 58.945 47.826 0.00 0.00 34.73 5.68
383 1987 5.466728 TGAGGCGCAATATAACTCTTTCATC 59.533 40.000 10.83 0.00 0.00 2.92
396 2003 2.309528 ACGAATTCTGAGGCGCAATA 57.690 45.000 10.83 0.00 0.00 1.90
413 2020 0.820226 TGAGAGGCCATCAGAGAACG 59.180 55.000 5.01 0.00 0.00 3.95
414 2021 2.224257 GGATGAGAGGCCATCAGAGAAC 60.224 54.545 15.06 5.52 43.49 3.01
473 2098 7.336679 TGGAATGACAGTTGGTAGATAACAATG 59.663 37.037 0.00 0.00 0.00 2.82
476 2101 6.212589 TCTGGAATGACAGTTGGTAGATAACA 59.787 38.462 0.00 0.00 39.48 2.41
483 2142 3.907474 TCCTTCTGGAATGACAGTTGGTA 59.093 43.478 0.00 0.00 39.87 3.25
523 2182 2.665519 GCTTGCACCACTATCAACAACG 60.666 50.000 0.00 0.00 0.00 4.10
600 2260 4.116961 CAAAATCAGGTTATGCATGCAGG 58.883 43.478 26.69 10.69 0.00 4.85
604 2264 7.318141 AGAAACTCAAAATCAGGTTATGCATG 58.682 34.615 10.16 0.00 0.00 4.06
737 2397 7.059945 CGCTTATTTCAAACACAGATCAGAAAC 59.940 37.037 0.00 0.00 0.00 2.78
763 2423 1.598701 GCCAGGTCCATTGAGTTGGC 61.599 60.000 5.92 5.92 41.36 4.52
833 2493 6.057533 AGCAGCTACTTATGAACATAATGCA 58.942 36.000 21.27 0.00 37.03 3.96
888 2643 3.057946 GTCAGGTTCAAAGCTTGTCATCC 60.058 47.826 0.00 0.00 33.87 3.51
890 2645 2.887152 GGTCAGGTTCAAAGCTTGTCAT 59.113 45.455 0.00 0.00 33.87 3.06
944 2699 5.191426 ACTTGAAATGTCAGATGATCCCTG 58.809 41.667 6.01 6.01 34.49 4.45
987 2742 1.209898 CGCCATCGCAAAAGAAGCA 59.790 52.632 0.00 0.00 34.03 3.91
1025 2781 3.058639 GGTGAGAACAGTCTGCACATTTC 60.059 47.826 0.00 0.00 35.41 2.17
1029 2785 0.249447 CGGTGAGAACAGTCTGCACA 60.249 55.000 0.00 0.00 35.41 4.57
1030 2786 0.032130 TCGGTGAGAACAGTCTGCAC 59.968 55.000 0.00 0.00 32.80 4.57
1138 2894 0.325671 TCAGGGTGGGAGATGAGGTC 60.326 60.000 0.00 0.00 0.00 3.85
1139 2895 0.119155 TTCAGGGTGGGAGATGAGGT 59.881 55.000 0.00 0.00 0.00 3.85
1162 2918 1.280421 GGTCTGTGGGAGCTTCTTGAT 59.720 52.381 0.00 0.00 39.18 2.57
1218 2974 0.037232 GAGCTACTTTGGGACAGCGT 60.037 55.000 0.00 0.00 42.39 5.07
1422 3178 0.403271 AACTGGAGTCAGCTGGCAAT 59.597 50.000 22.50 0.00 44.59 3.56
1534 3290 0.480690 ATATTTATGCCCGCCACCCA 59.519 50.000 0.00 0.00 0.00 4.51
1602 3358 5.372343 TGTGGCAAATACTGGTATCAGAT 57.628 39.130 10.76 0.00 43.49 2.90
1614 3370 5.528043 ACAAATGTCTGTTGTGGCAAATA 57.472 34.783 0.00 0.00 37.80 1.40
1621 3377 6.199531 CCTTGATGAAACAAATGTCTGTTGTG 59.800 38.462 0.00 0.00 39.47 3.33
1622 3378 6.275335 CCTTGATGAAACAAATGTCTGTTGT 58.725 36.000 0.00 0.00 39.47 3.32
1623 3379 5.176223 GCCTTGATGAAACAAATGTCTGTTG 59.824 40.000 0.00 0.00 39.47 3.33
1631 3387 4.501071 GAGCATGCCTTGATGAAACAAAT 58.499 39.130 15.66 0.00 0.00 2.32
1633 3389 2.231964 GGAGCATGCCTTGATGAAACAA 59.768 45.455 15.66 0.00 0.00 2.83
1653 3409 8.621286 ACTGTAGACTGAAAACTAACAAAATGG 58.379 33.333 0.00 0.00 0.00 3.16
1662 3418 6.072838 CCGACACTACTGTAGACTGAAAACTA 60.073 42.308 21.01 0.00 0.00 2.24
1665 3421 4.581824 ACCGACACTACTGTAGACTGAAAA 59.418 41.667 21.01 0.00 0.00 2.29
1666 3422 4.139786 ACCGACACTACTGTAGACTGAAA 58.860 43.478 21.01 0.00 0.00 2.69
1667 3423 3.748083 ACCGACACTACTGTAGACTGAA 58.252 45.455 21.01 0.00 0.00 3.02
1692 3448 2.357569 CCTCCATTTCTTCCCCTCCAAG 60.358 54.545 0.00 0.00 0.00 3.61
1693 3449 1.640670 CCTCCATTTCTTCCCCTCCAA 59.359 52.381 0.00 0.00 0.00 3.53
1715 3471 2.912956 ACTCCTTCTGGCACTGGAATTA 59.087 45.455 0.00 0.00 0.00 1.40
1720 3476 1.673665 GCACTCCTTCTGGCACTGG 60.674 63.158 0.00 0.00 0.00 4.00
1738 3494 8.044060 TCAAGAATAGCAAACTCATACCTTTG 57.956 34.615 0.00 0.00 0.00 2.77
1745 3501 6.888632 ACCAAGATCAAGAATAGCAAACTCAT 59.111 34.615 0.00 0.00 0.00 2.90
1746 3502 6.240894 ACCAAGATCAAGAATAGCAAACTCA 58.759 36.000 0.00 0.00 0.00 3.41
1747 3503 6.749923 ACCAAGATCAAGAATAGCAAACTC 57.250 37.500 0.00 0.00 0.00 3.01
1748 3504 8.814038 AATACCAAGATCAAGAATAGCAAACT 57.186 30.769 0.00 0.00 0.00 2.66
1749 3505 8.897752 AGAATACCAAGATCAAGAATAGCAAAC 58.102 33.333 0.00 0.00 0.00 2.93
1750 3506 9.466497 AAGAATACCAAGATCAAGAATAGCAAA 57.534 29.630 0.00 0.00 0.00 3.68
1751 3507 8.896744 CAAGAATACCAAGATCAAGAATAGCAA 58.103 33.333 0.00 0.00 0.00 3.91
1752 3508 7.500227 CCAAGAATACCAAGATCAAGAATAGCA 59.500 37.037 0.00 0.00 0.00 3.49
1753 3509 7.500559 ACCAAGAATACCAAGATCAAGAATAGC 59.499 37.037 0.00 0.00 0.00 2.97
1754 3510 8.970859 ACCAAGAATACCAAGATCAAGAATAG 57.029 34.615 0.00 0.00 0.00 1.73
1755 3511 7.710907 CGACCAAGAATACCAAGATCAAGAATA 59.289 37.037 0.00 0.00 0.00 1.75
1756 3512 6.540189 CGACCAAGAATACCAAGATCAAGAAT 59.460 38.462 0.00 0.00 0.00 2.40
1757 3513 5.874810 CGACCAAGAATACCAAGATCAAGAA 59.125 40.000 0.00 0.00 0.00 2.52
1758 3514 5.186992 TCGACCAAGAATACCAAGATCAAGA 59.813 40.000 0.00 0.00 0.00 3.02
1759 3515 5.419542 TCGACCAAGAATACCAAGATCAAG 58.580 41.667 0.00 0.00 0.00 3.02
1760 3516 5.414789 TCGACCAAGAATACCAAGATCAA 57.585 39.130 0.00 0.00 0.00 2.57
1764 3520 3.134081 GGGATCGACCAAGAATACCAAGA 59.866 47.826 6.41 0.00 41.20 3.02
1771 3527 0.839946 CCCTGGGATCGACCAAGAAT 59.160 55.000 7.01 0.00 42.20 2.40
1778 3534 2.670148 AAGTGCCCCTGGGATCGAC 61.670 63.158 16.20 4.82 37.50 4.20
1782 3538 2.172229 AATGCAAGTGCCCCTGGGAT 62.172 55.000 16.20 0.00 41.18 3.85
1807 3563 3.885484 AAAACGATTCTCTGTGTGCAG 57.115 42.857 0.00 0.00 43.87 4.41
1817 3573 6.534079 CCAGACGGAAACTATAAAACGATTCT 59.466 38.462 0.00 0.00 0.00 2.40
1820 3576 5.579511 CACCAGACGGAAACTATAAAACGAT 59.420 40.000 0.00 0.00 35.59 3.73
1825 3581 5.733620 AGACACCAGACGGAAACTATAAA 57.266 39.130 0.00 0.00 35.59 1.40
1826 3582 5.244402 TGAAGACACCAGACGGAAACTATAA 59.756 40.000 0.00 0.00 35.59 0.98
1827 3583 4.768448 TGAAGACACCAGACGGAAACTATA 59.232 41.667 0.00 0.00 35.59 1.31
1828 3584 3.576982 TGAAGACACCAGACGGAAACTAT 59.423 43.478 0.00 0.00 35.59 2.12
1829 3585 2.960384 TGAAGACACCAGACGGAAACTA 59.040 45.455 0.00 0.00 35.59 2.24
1837 3593 5.392767 TCATAGTTCTGAAGACACCAGAC 57.607 43.478 0.00 0.00 40.05 3.51
1849 3605 7.095732 CGTCCATTCATCTGAATCATAGTTCTG 60.096 40.741 2.45 0.00 42.41 3.02
1854 3610 5.120363 CAGCGTCCATTCATCTGAATCATAG 59.880 44.000 2.45 0.00 42.41 2.23
1863 3619 1.065926 TGCTTCAGCGTCCATTCATCT 60.066 47.619 0.00 0.00 45.83 2.90
1888 3644 6.625362 TGTTCAGCAACTTGTTATTGTTCAA 58.375 32.000 0.00 0.00 33.17 2.69
1892 3648 7.711846 TGTATTGTTCAGCAACTTGTTATTGT 58.288 30.769 0.00 0.00 40.28 2.71
1912 3668 7.010771 TCATAGCCATAGACTGTACCTGTATT 58.989 38.462 0.00 0.00 0.00 1.89
1913 3669 6.552932 TCATAGCCATAGACTGTACCTGTAT 58.447 40.000 0.00 0.00 0.00 2.29
1914 3670 5.948842 TCATAGCCATAGACTGTACCTGTA 58.051 41.667 0.00 0.00 0.00 2.74
1916 3672 5.791336 TTCATAGCCATAGACTGTACCTG 57.209 43.478 0.00 0.00 0.00 4.00
1922 3678 5.178996 GCACAGAATTCATAGCCATAGACTG 59.821 44.000 8.44 0.00 0.00 3.51
1945 3701 2.924757 TCTGGATGACATGAGATGGC 57.075 50.000 0.00 0.00 39.32 4.40
1946 3702 3.006644 ACGATCTGGATGACATGAGATGG 59.993 47.826 0.00 10.92 33.60 3.51
1953 3709 5.598416 TCAAACTACGATCTGGATGACAT 57.402 39.130 0.00 0.00 0.00 3.06
1983 3739 6.258947 TCATTGTGTTGTCACGAAGATTAACA 59.741 34.615 0.00 0.79 46.49 2.41
1985 3741 6.852858 TCATTGTGTTGTCACGAAGATTAA 57.147 33.333 0.00 0.00 46.49 1.40
1991 3747 2.031245 GCCATCATTGTGTTGTCACGAA 60.031 45.455 0.00 0.00 46.49 3.85
1995 3751 1.603456 ACGCCATCATTGTGTTGTCA 58.397 45.000 0.00 0.00 0.00 3.58
2001 3757 2.938451 AGTGTCATACGCCATCATTGTG 59.062 45.455 0.00 0.00 0.00 3.33
2005 3761 1.139654 AGCAGTGTCATACGCCATCAT 59.860 47.619 0.00 0.00 31.95 2.45
2040 3796 0.250467 GGCCAACAGAGCAGAGAACA 60.250 55.000 0.00 0.00 0.00 3.18
2050 3806 2.463589 AAATCGCCTCGGCCAACAGA 62.464 55.000 2.24 0.00 37.98 3.41
2053 3809 1.376609 ATCAAATCGCCTCGGCCAAC 61.377 55.000 2.24 0.00 37.98 3.77
2058 3814 1.262417 CATGACATCAAATCGCCTCGG 59.738 52.381 0.00 0.00 0.00 4.63
2073 3829 2.614057 CGGAACATAGGGAAAGCATGAC 59.386 50.000 0.00 0.00 0.00 3.06
2079 3835 2.403252 ACAGCGGAACATAGGGAAAG 57.597 50.000 0.00 0.00 0.00 2.62
2109 3865 5.266709 ACTAACTACTCAGGGGAACACTA 57.733 43.478 0.00 0.00 0.00 2.74
2152 3908 2.081725 TACACGGCTGCAAATCGTTA 57.918 45.000 0.50 0.00 34.73 3.18
2316 4072 4.643334 AGCAATTCTGTCATGTGCACATAT 59.357 37.500 30.92 17.27 37.68 1.78
2320 4076 3.293311 AAGCAATTCTGTCATGTGCAC 57.707 42.857 10.75 10.75 37.68 4.57
2432 4426 2.611225 TCCAACGGCAAGCAAATTTT 57.389 40.000 0.00 0.00 0.00 1.82
2433 4427 2.482864 CTTCCAACGGCAAGCAAATTT 58.517 42.857 0.00 0.00 0.00 1.82
2434 4428 1.873486 GCTTCCAACGGCAAGCAAATT 60.873 47.619 2.00 0.00 43.87 1.82
2435 4429 0.319813 GCTTCCAACGGCAAGCAAAT 60.320 50.000 2.00 0.00 43.87 2.32
2443 4437 0.744414 TATCAGCTGCTTCCAACGGC 60.744 55.000 9.47 0.00 39.82 5.68
2471 4542 5.955488 TCTAAGAGGAAGATGTTTCTGTCG 58.045 41.667 0.00 0.00 30.72 4.35
2507 4578 7.036644 ACCCAAAGGATCCATATTCATATAGCA 60.037 37.037 15.82 0.00 36.73 3.49
2544 4615 9.331282 GAGTAGTACTCATTTAATTCAGCCAAT 57.669 33.333 22.85 0.00 44.45 3.16
2640 4711 7.913674 AAGAATGAGTGAAAAAGGCTACTAG 57.086 36.000 0.00 0.00 0.00 2.57
2641 4712 8.691661 AAAAGAATGAGTGAAAAAGGCTACTA 57.308 30.769 0.00 0.00 0.00 1.82
2642 4713 7.588497 AAAAGAATGAGTGAAAAAGGCTACT 57.412 32.000 0.00 0.00 0.00 2.57
2815 4907 8.543352 TTTGATGACAAGTATTTCCGGATGGAG 61.543 40.741 4.15 0.00 40.39 3.86
2816 4908 4.163268 TGATGACAAGTATTTCCGGATGGA 59.837 41.667 4.15 0.00 44.61 3.41
2817 4909 4.450976 TGATGACAAGTATTTCCGGATGG 58.549 43.478 4.15 0.00 0.00 3.51
2818 4910 6.435430 TTTGATGACAAGTATTTCCGGATG 57.565 37.500 4.15 0.97 37.32 3.51
2819 4911 7.416664 CCATTTTGATGACAAGTATTTCCGGAT 60.417 37.037 4.15 0.00 37.32 4.18
2820 4912 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
2821 4913 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
2822 4914 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
2828 4920 9.527157 TCCTTTTATCCATTTTGATGACAAGTA 57.473 29.630 0.00 0.00 37.32 2.24
2829 4921 8.421249 TCCTTTTATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
2830 4922 8.742777 TCTCCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
2831 4923 8.648698 TCTCCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
2832 4924 8.689061 CATCTCCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 32.05 3.58
2833 4925 8.689972 ACATCTCCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 33.85 3.06
2834 4926 8.827832 ACATCTCCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 33.85 2.92
2836 4928 9.927081 ACTACATCTCCTTTTATCCATTTTGAT 57.073 29.630 0.00 0.00 0.00 2.57
2844 4936 9.953697 CGCTATATACTACATCTCCTTTTATCC 57.046 37.037 0.00 0.00 0.00 2.59
2848 4940 9.080097 ACTTCGCTATATACTACATCTCCTTTT 57.920 33.333 0.00 0.00 0.00 2.27
2849 4941 8.516234 CACTTCGCTATATACTACATCTCCTTT 58.484 37.037 0.00 0.00 0.00 3.11
2850 4942 7.666388 ACACTTCGCTATATACTACATCTCCTT 59.334 37.037 0.00 0.00 0.00 3.36
2851 4943 7.169591 ACACTTCGCTATATACTACATCTCCT 58.830 38.462 0.00 0.00 0.00 3.69
2852 4944 7.380431 ACACTTCGCTATATACTACATCTCC 57.620 40.000 0.00 0.00 0.00 3.71
2853 4945 8.389603 GGTACACTTCGCTATATACTACATCTC 58.610 40.741 0.00 0.00 0.00 2.75
2854 4946 7.336427 GGGTACACTTCGCTATATACTACATCT 59.664 40.741 0.00 0.00 0.00 2.90
2855 4947 7.336427 AGGGTACACTTCGCTATATACTACATC 59.664 40.741 0.00 0.00 0.00 3.06
2856 4948 7.173722 AGGGTACACTTCGCTATATACTACAT 58.826 38.462 0.00 0.00 0.00 2.29
2857 4949 6.537355 AGGGTACACTTCGCTATATACTACA 58.463 40.000 0.00 0.00 0.00 2.74
2858 4950 6.093357 GGAGGGTACACTTCGCTATATACTAC 59.907 46.154 0.00 0.00 0.00 2.73
2859 4951 6.176183 GGAGGGTACACTTCGCTATATACTA 58.824 44.000 0.00 0.00 0.00 1.82
2860 4952 5.008980 GGAGGGTACACTTCGCTATATACT 58.991 45.833 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.