Multiple sequence alignment - TraesCS6B01G462800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G462800 chr6B 100.000 2740 0 0 1 2740 715686629 715689368 0.000000e+00 5060.0
1 TraesCS6B01G462800 chr6B 82.869 251 28 9 1935 2184 715682232 715682468 7.690000e-51 211.0
2 TraesCS6B01G462800 chr6B 95.455 44 0 2 2132 2175 715699185 715699226 4.900000e-08 69.4
3 TraesCS6B01G462800 chr6B 93.182 44 2 1 1901 1944 715682136 715682178 2.280000e-06 63.9
4 TraesCS6B01G462800 chr6A 87.575 1666 116 50 1 1607 614597111 614598744 0.000000e+00 1845.0
5 TraesCS6B01G462800 chr6A 82.670 427 35 26 1772 2175 614599036 614599446 2.610000e-90 342.0
6 TraesCS6B01G462800 chr6A 84.956 113 13 4 2063 2175 614590640 614590748 8.020000e-21 111.0
7 TraesCS6B01G462800 chr6A 97.826 46 0 1 2130 2175 614613175 614613219 8.130000e-11 78.7
8 TraesCS6B01G462800 chr6A 92.308 52 4 0 1688 1739 614598848 614598899 1.050000e-09 75.0
9 TraesCS6B01G462800 chr6A 100.000 40 0 0 2136 2175 614610200 614610239 1.050000e-09 75.0
10 TraesCS6B01G462800 chr6D 90.480 1145 64 19 582 1705 469552265 469553385 0.000000e+00 1469.0
11 TraesCS6B01G462800 chr6D 90.909 594 40 7 1 585 469541519 469542107 0.000000e+00 785.0
12 TraesCS6B01G462800 chr6D 82.061 262 29 11 1930 2184 469554020 469554270 9.940000e-50 207.0
13 TraesCS6B01G462800 chr6D 91.333 150 11 2 2589 2737 469554339 469554487 1.290000e-48 204.0
14 TraesCS6B01G462800 chr6D 85.106 94 8 4 2095 2184 469539462 469539553 1.040000e-14 91.6
15 TraesCS6B01G462800 chr5D 90.196 459 40 4 1150 1607 350980808 350980354 6.530000e-166 593.0
16 TraesCS6B01G462800 chr5D 86.789 492 56 8 1142 1631 350731393 350730909 8.630000e-150 540.0
17 TraesCS6B01G462800 chr5D 86.445 391 38 9 2209 2587 30973647 30974034 5.460000e-112 414.0
18 TraesCS6B01G462800 chr5B 89.293 467 45 4 1142 1607 411786181 411785719 5.090000e-162 580.0
19 TraesCS6B01G462800 chr5A 89.293 467 45 4 1142 1607 451393021 451392559 5.090000e-162 580.0
20 TraesCS6B01G462800 chr7A 89.518 353 32 3 2236 2587 730843633 730843285 2.500000e-120 442.0
21 TraesCS6B01G462800 chr2A 88.515 357 35 6 2235 2587 764335495 764335849 7.010000e-116 427.0
22 TraesCS6B01G462800 chr7D 88.451 355 38 3 2235 2587 99616682 99616329 2.520000e-115 425.0
23 TraesCS6B01G462800 chr1D 88.506 348 37 3 2242 2587 488109448 488109102 4.220000e-113 418.0
24 TraesCS6B01G462800 chr3A 88.663 344 36 3 2248 2589 80127747 80127405 1.520000e-112 416.0
25 TraesCS6B01G462800 chr2D 87.921 356 37 6 2235 2587 606047524 606047172 5.460000e-112 414.0
26 TraesCS6B01G462800 chr4D 87.328 363 38 7 2235 2595 477861897 477861541 2.540000e-110 409.0
27 TraesCS6B01G462800 chr4D 81.481 81 12 3 198 276 480858287 480858366 2.280000e-06 63.9
28 TraesCS6B01G462800 chr7B 85.901 383 43 8 2209 2589 374982612 374982239 5.500000e-107 398.0
29 TraesCS6B01G462800 chr3D 90.385 52 4 1 2137 2188 594895167 594895117 1.760000e-07 67.6
30 TraesCS6B01G462800 chrUn 73.023 215 41 15 53 262 17325983 17325781 2.950000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G462800 chr6B 715686629 715689368 2739 False 5060.000000 5060 100.000000 1 2740 1 chr6B.!!$F1 2739
1 TraesCS6B01G462800 chr6A 614597111 614599446 2335 False 754.000000 1845 87.517667 1 2175 3 chr6A.!!$F2 2174
2 TraesCS6B01G462800 chr6D 469552265 469554487 2222 False 626.666667 1469 87.958000 582 2737 3 chr6D.!!$F2 2155
3 TraesCS6B01G462800 chr6D 469539462 469542107 2645 False 438.300000 785 88.007500 1 2184 2 chr6D.!!$F1 2183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 2962 0.458669 ACCCCGTAGCATAACGACAG 59.541 55.0 7.71 0.0 45.68 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2036 4603 0.0414 CGCAGAAAATGTGACGTGCA 60.041 50.0 0.0 0.0 42.31 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 2139 0.598065 ATGTGAGAGTTTTTGCCGCC 59.402 50.000 0.00 0.00 0.00 6.13
85 2150 2.611225 TTTTGCCGCCAGATTTGTTT 57.389 40.000 0.00 0.00 0.00 2.83
133 2199 5.226396 GCGTGTCTATCAAGAGAGCAATAT 58.774 41.667 0.00 0.00 30.45 1.28
144 2210 8.783833 TCAAGAGAGCAATATATTGGCTATTC 57.216 34.615 23.57 18.93 38.21 1.75
152 2218 2.700722 TATTGGCTATTCGTGTGGCA 57.299 45.000 0.00 0.00 34.48 4.92
157 2223 2.289756 TGGCTATTCGTGTGGCAACTTA 60.290 45.455 0.00 0.00 33.38 2.24
158 2224 2.745281 GGCTATTCGTGTGGCAACTTAA 59.255 45.455 0.00 0.00 37.61 1.85
159 2225 3.377172 GGCTATTCGTGTGGCAACTTAAT 59.623 43.478 0.00 0.00 37.61 1.40
160 2226 4.142469 GGCTATTCGTGTGGCAACTTAATT 60.142 41.667 0.00 0.00 37.61 1.40
183 2249 9.528018 AATTCAATGTCTTATTTCGTGTTGTTT 57.472 25.926 0.00 0.00 0.00 2.83
191 2257 2.455295 TTCGTGTTGTTTTGCGGTAC 57.545 45.000 0.00 0.00 0.00 3.34
244 2310 3.181493 GGTGATGGATTGCAAGCTTGTAG 60.181 47.826 26.55 2.93 0.00 2.74
253 2319 1.722011 CAAGCTTGTAGTACGTGGGG 58.278 55.000 18.65 0.00 0.00 4.96
276 2344 6.095860 GGGGTAATGCTATAACCGTTTTCTTT 59.904 38.462 0.00 0.00 33.11 2.52
328 2399 3.877508 GAGTGGCTATTGCGGTCTTTAAT 59.122 43.478 0.00 0.00 40.82 1.40
340 2411 3.709987 GGTCTTTAATGCATGACATGGC 58.290 45.455 17.03 9.73 39.60 4.40
405 2476 7.989416 AGTGTAATTTTTAATCTCCAACGGA 57.011 32.000 0.00 0.00 0.00 4.69
417 2488 3.055675 TCTCCAACGGACGGAATACAATT 60.056 43.478 0.00 0.00 30.33 2.32
425 2496 6.579865 ACGGACGGAATACAATTAGAGAAAT 58.420 36.000 0.00 0.00 0.00 2.17
554 2628 2.158475 TCCAAGATGCCTTTTGGTGTCT 60.158 45.455 10.45 0.00 43.43 3.41
555 2629 2.629617 CCAAGATGCCTTTTGGTGTCTT 59.370 45.455 3.45 0.00 42.14 3.01
556 2630 3.826157 CCAAGATGCCTTTTGGTGTCTTA 59.174 43.478 3.45 0.00 40.68 2.10
557 2631 4.321230 CCAAGATGCCTTTTGGTGTCTTAC 60.321 45.833 3.45 0.00 40.68 2.34
598 2679 4.439968 ACGTAGCTAGGGCAAATCTTTAC 58.560 43.478 17.23 0.00 41.70 2.01
600 2681 2.919228 AGCTAGGGCAAATCTTTACCG 58.081 47.619 0.00 0.00 41.70 4.02
629 2713 7.603651 AGGAGTATTACATAATTAGCGAGTGG 58.396 38.462 0.00 0.00 0.00 4.00
688 2773 5.437060 AGAAGTCAACTAGCACAAAGGAAA 58.563 37.500 0.00 0.00 0.00 3.13
786 2875 1.332904 CGCTCTTGACGAACCAAACAC 60.333 52.381 0.00 0.00 0.00 3.32
804 2893 8.203485 ACCAAACACATACAGTTCAAATTCAAT 58.797 29.630 0.00 0.00 0.00 2.57
848 2962 0.458669 ACCCCGTAGCATAACGACAG 59.541 55.000 7.71 0.00 45.68 3.51
858 2972 3.005897 AGCATAACGACAGGCCTAGTATG 59.994 47.826 3.98 10.10 0.00 2.39
879 2998 9.895138 AGTATGGTACGTACTAATTTTTGGATT 57.105 29.630 24.07 3.01 30.91 3.01
883 3002 7.276218 TGGTACGTACTAATTTTTGGATTCTCG 59.724 37.037 24.07 0.00 0.00 4.04
976 3095 1.118838 CCACCCCAAACAAGCAAGAA 58.881 50.000 0.00 0.00 0.00 2.52
982 3101 2.450160 CCAAACAAGCAAGAACACGAC 58.550 47.619 0.00 0.00 0.00 4.34
1013 3132 7.327214 GCATCCTATCCTAGCTATATAATGCC 58.673 42.308 14.75 5.27 30.97 4.40
1035 3154 2.901839 AGCCATTGGTGCAATCTTTCTT 59.098 40.909 4.26 0.00 31.05 2.52
1062 3181 1.603739 GAGGAGCCAACACAACCCC 60.604 63.158 0.00 0.00 0.00 4.95
1105 3240 4.724602 GCTGCCTCGTCGTGCTGA 62.725 66.667 16.09 0.00 0.00 4.26
1289 3424 2.763881 GCTCAACGACTTCGACGC 59.236 61.111 5.47 0.00 43.02 5.19
1465 3600 2.358369 TCGACGAGTGCGACTCCT 60.358 61.111 0.00 0.73 42.12 3.69
1524 3659 2.369629 CCGCAACAACGTCGTCGAT 61.370 57.895 9.47 0.00 40.62 3.59
1612 3747 1.297664 GTCAGATGCATGACTCTGCC 58.702 55.000 2.46 5.47 45.03 4.85
1613 3748 0.179092 TCAGATGCATGACTCTGCCG 60.179 55.000 2.46 0.00 41.58 5.69
1614 3749 1.523258 AGATGCATGACTCTGCCGC 60.523 57.895 2.46 0.00 41.58 6.53
1615 3750 2.515523 ATGCATGACTCTGCCGCC 60.516 61.111 0.00 0.00 41.58 6.13
1616 3751 4.783621 TGCATGACTCTGCCGCCC 62.784 66.667 0.00 0.00 41.58 6.13
1654 3793 4.757149 GTGCCTTGATGTAGTGTTCTCTTT 59.243 41.667 0.00 0.00 0.00 2.52
1663 3802 8.721478 TGATGTAGTGTTCTCTTTCTTATTTGC 58.279 33.333 0.00 0.00 0.00 3.68
1673 3815 8.340618 TCTCTTTCTTATTTGCAGCTTATGTT 57.659 30.769 0.00 0.00 0.00 2.71
1686 3861 3.443681 AGCTTATGTTTATGTGTGGTGCC 59.556 43.478 0.00 0.00 0.00 5.01
1690 3865 2.660572 TGTTTATGTGTGGTGCCTTGT 58.339 42.857 0.00 0.00 0.00 3.16
1700 3960 2.032924 GTGGTGCCTTGTTGTAGTGTTC 59.967 50.000 0.00 0.00 0.00 3.18
1710 3970 7.132213 CCTTGTTGTAGTGTTCAAATGTAGTG 58.868 38.462 0.00 0.00 0.00 2.74
1739 3999 9.302345 CTCGATGAATAAGTAAACTGCTCTTTA 57.698 33.333 0.00 0.00 0.00 1.85
1807 4337 2.428890 ACCGAGTGCTTTCTATCAGGAG 59.571 50.000 0.00 0.00 0.00 3.69
1838 4368 3.627577 ACAAAAAGAATGCGAGTGTCAGT 59.372 39.130 0.00 0.00 0.00 3.41
1851 4381 5.140177 CGAGTGTCAGTCATAAAAACTTGC 58.860 41.667 8.39 0.00 0.00 4.01
1852 4382 5.277297 CGAGTGTCAGTCATAAAAACTTGCA 60.277 40.000 8.39 0.00 0.00 4.08
1857 4387 7.897800 GTGTCAGTCATAAAAACTTGCAAAAAC 59.102 33.333 0.00 0.00 0.00 2.43
1858 4388 7.600375 TGTCAGTCATAAAAACTTGCAAAAACA 59.400 29.630 0.00 0.00 0.00 2.83
1859 4389 8.603181 GTCAGTCATAAAAACTTGCAAAAACAT 58.397 29.630 0.00 0.00 0.00 2.71
1860 4390 9.809096 TCAGTCATAAAAACTTGCAAAAACATA 57.191 25.926 0.00 0.00 0.00 2.29
1861 4391 9.848172 CAGTCATAAAAACTTGCAAAAACATAC 57.152 29.630 0.00 0.00 0.00 2.39
1862 4392 9.816354 AGTCATAAAAACTTGCAAAAACATACT 57.184 25.926 0.00 0.00 0.00 2.12
1890 4420 0.447801 CGGCAATGGAGAGGTTTTCG 59.552 55.000 0.00 0.00 0.00 3.46
1937 4470 1.238439 CACAACATTCGAGCCCAGTT 58.762 50.000 0.00 0.00 0.00 3.16
1951 4513 3.709653 AGCCCAGTTACAGATTATTCCGA 59.290 43.478 0.00 0.00 0.00 4.55
1952 4514 4.163458 AGCCCAGTTACAGATTATTCCGAA 59.837 41.667 0.00 0.00 0.00 4.30
1970 4532 1.968493 GAAGTGGACCAGTCTACACCA 59.032 52.381 15.49 0.00 42.60 4.17
1986 4548 0.783850 ACCACCCAGCCCAGTTAAAT 59.216 50.000 0.00 0.00 0.00 1.40
2017 4579 1.300233 GCCCATAGAGCGTCCGAAG 60.300 63.158 0.00 0.00 0.00 3.79
2033 4600 1.201965 CGAAGAATGTGCTTTCGGCTC 60.202 52.381 0.00 0.00 42.39 4.70
2036 4603 2.508526 AGAATGTGCTTTCGGCTCTTT 58.491 42.857 0.00 0.00 42.39 2.52
2038 4605 0.242017 ATGTGCTTTCGGCTCTTTGC 59.758 50.000 0.00 0.00 42.39 3.68
2040 4607 0.661483 GTGCTTTCGGCTCTTTGCAC 60.661 55.000 0.00 0.00 45.15 4.57
2044 4611 0.812014 TTTCGGCTCTTTGCACGTCA 60.812 50.000 0.00 0.00 45.15 4.35
2054 4621 2.118228 TTGCACGTCACATTTTCTGC 57.882 45.000 0.00 0.00 0.00 4.26
2055 4622 0.041400 TGCACGTCACATTTTCTGCG 60.041 50.000 0.00 0.00 0.00 5.18
2056 4623 1.330080 GCACGTCACATTTTCTGCGC 61.330 55.000 0.00 0.00 0.00 6.09
2057 4624 1.054348 CACGTCACATTTTCTGCGCG 61.054 55.000 0.00 0.00 0.00 6.86
2058 4625 1.218875 ACGTCACATTTTCTGCGCGA 61.219 50.000 12.10 0.00 0.00 5.87
2059 4626 0.110867 CGTCACATTTTCTGCGCGAA 60.111 50.000 12.10 0.00 0.00 4.70
2060 4627 1.595609 GTCACATTTTCTGCGCGAAG 58.404 50.000 12.10 10.02 32.21 3.79
2087 4654 7.285783 GGGAAACCGCTAACAAAAATATTTC 57.714 36.000 0.10 0.00 43.64 2.17
2088 4655 7.094631 GGGAAACCGCTAACAAAAATATTTCT 58.905 34.615 0.10 0.00 43.64 2.52
2089 4656 7.062956 GGGAAACCGCTAACAAAAATATTTCTG 59.937 37.037 0.10 0.00 43.64 3.02
2090 4657 6.944557 AACCGCTAACAAAAATATTTCTGC 57.055 33.333 0.10 0.21 0.00 4.26
2091 4658 5.092781 ACCGCTAACAAAAATATTTCTGCG 58.907 37.500 0.10 10.60 39.46 5.18
2094 4661 5.646606 GCTAACAAAAATATTTCTGCGGGA 58.353 37.500 0.10 0.00 0.00 5.14
2095 4662 6.096695 GCTAACAAAAATATTTCTGCGGGAA 58.903 36.000 0.10 0.00 0.00 3.97
2123 4690 6.780706 AACTATATCGGCAAGATAAAACGG 57.219 37.500 5.42 0.00 44.27 4.44
2129 4696 1.743394 GGCAAGATAAAACGGAGGTGG 59.257 52.381 0.00 0.00 0.00 4.61
2139 4706 9.862149 AGATAAAACGGAGGTGGAAAATATAAT 57.138 29.630 0.00 0.00 0.00 1.28
2178 4745 3.655777 TCGATCCCCCTGCCTTTTAATAT 59.344 43.478 0.00 0.00 0.00 1.28
2181 4748 5.045869 CGATCCCCCTGCCTTTTAATATCTA 60.046 44.000 0.00 0.00 0.00 1.98
2182 4749 6.353082 CGATCCCCCTGCCTTTTAATATCTAT 60.353 42.308 0.00 0.00 0.00 1.98
2184 4751 6.552008 TCCCCCTGCCTTTTAATATCTATTG 58.448 40.000 0.00 0.00 0.00 1.90
2188 4794 9.401058 CCCCTGCCTTTTAATATCTATTGATAG 57.599 37.037 3.32 0.00 38.42 2.08
2222 4828 9.624697 CAATATAATATTGGAAATCCGTTGGTG 57.375 33.333 0.00 0.00 39.43 4.17
2223 4829 4.385358 AATATTGGAAATCCGTTGGTGC 57.615 40.909 0.00 0.00 39.43 5.01
2224 4830 1.923356 ATTGGAAATCCGTTGGTGCT 58.077 45.000 0.00 0.00 39.43 4.40
2225 4831 1.698506 TTGGAAATCCGTTGGTGCTT 58.301 45.000 0.00 0.00 39.43 3.91
2226 4832 1.243902 TGGAAATCCGTTGGTGCTTC 58.756 50.000 0.00 0.00 39.43 3.86
2227 4833 0.526211 GGAAATCCGTTGGTGCTTCC 59.474 55.000 0.00 0.00 0.00 3.46
2228 4834 1.534729 GAAATCCGTTGGTGCTTCCT 58.465 50.000 0.80 0.00 37.07 3.36
2229 4835 1.200020 GAAATCCGTTGGTGCTTCCTG 59.800 52.381 0.80 0.00 37.07 3.86
2230 4836 0.609131 AATCCGTTGGTGCTTCCTGG 60.609 55.000 0.00 0.00 37.07 4.45
2231 4837 1.488705 ATCCGTTGGTGCTTCCTGGA 61.489 55.000 0.00 0.00 37.21 3.86
2232 4838 1.672356 CCGTTGGTGCTTCCTGGAG 60.672 63.158 0.00 0.00 37.07 3.86
2233 4839 2.328099 CGTTGGTGCTTCCTGGAGC 61.328 63.158 10.12 10.12 43.00 4.70
2234 4840 2.032528 TTGGTGCTTCCTGGAGCG 59.967 61.111 11.67 3.00 45.64 5.03
2258 4864 8.739461 GCGCACGCTAAAATTATATTTTAAAGT 58.261 29.630 7.96 6.25 38.26 2.66
2297 4903 7.908230 CAAACAAAAATTTGGCGCATATATCT 58.092 30.769 10.83 0.00 42.34 1.98
2298 4904 7.698836 AACAAAAATTTGGCGCATATATCTC 57.301 32.000 10.83 0.00 42.34 2.75
2299 4905 5.914635 ACAAAAATTTGGCGCATATATCTCG 59.085 36.000 10.83 0.00 42.34 4.04
2300 4906 5.940192 AAAATTTGGCGCATATATCTCGA 57.060 34.783 10.83 0.00 0.00 4.04
2301 4907 4.928661 AATTTGGCGCATATATCTCGAC 57.071 40.909 10.83 5.66 0.00 4.20
2302 4908 3.378911 TTTGGCGCATATATCTCGACA 57.621 42.857 10.83 8.03 39.74 4.35
2303 4909 3.592898 TTGGCGCATATATCTCGACAT 57.407 42.857 10.83 0.00 41.22 3.06
2304 4910 3.592898 TGGCGCATATATCTCGACATT 57.407 42.857 10.83 0.00 36.19 2.71
2305 4911 4.712122 TGGCGCATATATCTCGACATTA 57.288 40.909 10.83 0.00 36.19 1.90
2306 4912 5.262588 TGGCGCATATATCTCGACATTAT 57.737 39.130 10.83 0.00 36.19 1.28
2307 4913 6.385649 TGGCGCATATATCTCGACATTATA 57.614 37.500 10.83 0.00 36.19 0.98
2308 4914 6.981722 TGGCGCATATATCTCGACATTATAT 58.018 36.000 10.83 0.00 36.19 0.86
2309 4915 6.863126 TGGCGCATATATCTCGACATTATATG 59.137 38.462 10.83 14.49 36.19 1.78
2311 4917 8.021396 GGCGCATATATCTCGACATTATATGTA 58.979 37.037 10.83 0.00 45.03 2.29
2312 4918 9.561270 GCGCATATATCTCGACATTATATGTAT 57.439 33.333 0.30 0.00 45.03 2.29
2320 4926 8.314143 TCTCGACATTATATGTATACACGTCA 57.686 34.615 7.96 0.00 45.03 4.35
2321 4927 8.776470 TCTCGACATTATATGTATACACGTCAA 58.224 33.333 7.96 0.85 45.03 3.18
2322 4928 8.944212 TCGACATTATATGTATACACGTCAAG 57.056 34.615 7.96 0.41 45.03 3.02
2323 4929 8.562052 TCGACATTATATGTATACACGTCAAGT 58.438 33.333 7.96 3.73 45.03 3.16
2324 4930 9.177304 CGACATTATATGTATACACGTCAAGTT 57.823 33.333 7.96 0.00 45.03 2.66
2329 4935 9.872721 TTATATGTATACACGTCAAGTTTTGGA 57.127 29.630 7.96 0.00 0.00 3.53
2330 4936 6.721571 ATGTATACACGTCAAGTTTTGGAG 57.278 37.500 7.96 0.00 0.00 3.86
2331 4937 5.845103 TGTATACACGTCAAGTTTTGGAGA 58.155 37.500 0.08 0.00 0.00 3.71
2332 4938 6.282167 TGTATACACGTCAAGTTTTGGAGAA 58.718 36.000 0.08 0.00 0.00 2.87
2333 4939 6.762187 TGTATACACGTCAAGTTTTGGAGAAA 59.238 34.615 0.08 0.00 0.00 2.52
2334 4940 6.687081 ATACACGTCAAGTTTTGGAGAAAA 57.313 33.333 0.00 0.00 0.00 2.29
2365 4971 6.713792 TTTTTGTGGCTTGTGTAAAAAGAC 57.286 33.333 0.00 0.00 40.70 3.01
2371 4977 5.966636 GGCTTGTGTAAAAAGACAAAAGG 57.033 39.130 8.22 0.00 39.76 3.11
2372 4978 5.656480 GGCTTGTGTAAAAAGACAAAAGGA 58.344 37.500 8.22 0.00 39.76 3.36
2373 4979 6.280643 GGCTTGTGTAAAAAGACAAAAGGAT 58.719 36.000 8.22 0.00 39.76 3.24
2374 4980 6.200854 GGCTTGTGTAAAAAGACAAAAGGATG 59.799 38.462 8.22 0.00 39.76 3.51
2375 4981 6.756542 GCTTGTGTAAAAAGACAAAAGGATGT 59.243 34.615 8.22 0.00 30.71 3.06
2387 4993 6.530019 ACAAAAGGATGTCTTGTGAAAAGT 57.470 33.333 3.25 0.00 35.55 2.66
2388 4994 7.639113 ACAAAAGGATGTCTTGTGAAAAGTA 57.361 32.000 3.25 0.00 35.55 2.24
2389 4995 8.062065 ACAAAAGGATGTCTTGTGAAAAGTAA 57.938 30.769 3.25 0.00 35.55 2.24
2390 4996 8.695456 ACAAAAGGATGTCTTGTGAAAAGTAAT 58.305 29.630 3.25 0.00 35.55 1.89
2391 4997 9.533253 CAAAAGGATGTCTTGTGAAAAGTAATT 57.467 29.630 0.00 0.00 35.55 1.40
2417 5023 9.712305 TTTTAACACTGGATTTTGTCTTTTTCA 57.288 25.926 0.00 0.00 0.00 2.69
2418 5024 8.696410 TTAACACTGGATTTTGTCTTTTTCAC 57.304 30.769 0.00 0.00 0.00 3.18
2419 5025 6.279513 ACACTGGATTTTGTCTTTTTCACA 57.720 33.333 0.00 0.00 0.00 3.58
2420 5026 6.099341 ACACTGGATTTTGTCTTTTTCACAC 58.901 36.000 0.00 0.00 0.00 3.82
2421 5027 5.229887 CACTGGATTTTGTCTTTTTCACACG 59.770 40.000 0.00 0.00 0.00 4.49
2422 5028 4.109050 TGGATTTTGTCTTTTTCACACGC 58.891 39.130 0.00 0.00 0.00 5.34
2423 5029 3.179599 GGATTTTGTCTTTTTCACACGCG 59.820 43.478 3.53 3.53 0.00 6.01
2424 5030 3.473093 TTTTGTCTTTTTCACACGCGA 57.527 38.095 15.93 0.00 0.00 5.87
2425 5031 2.445453 TTGTCTTTTTCACACGCGAC 57.555 45.000 15.93 0.00 0.00 5.19
2426 5032 1.360820 TGTCTTTTTCACACGCGACA 58.639 45.000 15.93 0.00 0.00 4.35
2427 5033 1.061421 TGTCTTTTTCACACGCGACAC 59.939 47.619 15.93 0.00 0.00 3.67
2428 5034 1.061421 GTCTTTTTCACACGCGACACA 59.939 47.619 15.93 0.00 0.00 3.72
2429 5035 1.937223 TCTTTTTCACACGCGACACAT 59.063 42.857 15.93 0.00 0.00 3.21
2430 5036 3.060138 GTCTTTTTCACACGCGACACATA 60.060 43.478 15.93 0.00 0.00 2.29
2431 5037 3.556365 TCTTTTTCACACGCGACACATAA 59.444 39.130 15.93 0.00 0.00 1.90
2432 5038 3.513462 TTTTCACACGCGACACATAAG 57.487 42.857 15.93 0.00 0.00 1.73
2433 5039 2.143008 TTCACACGCGACACATAAGT 57.857 45.000 15.93 0.00 0.00 2.24
2434 5040 2.143008 TCACACGCGACACATAAGTT 57.857 45.000 15.93 0.00 0.00 2.66
2435 5041 3.285816 TCACACGCGACACATAAGTTA 57.714 42.857 15.93 0.00 0.00 2.24
2436 5042 3.840468 TCACACGCGACACATAAGTTAT 58.160 40.909 15.93 0.00 0.00 1.89
2437 5043 4.239304 TCACACGCGACACATAAGTTATT 58.761 39.130 15.93 0.00 0.00 1.40
2438 5044 4.090786 TCACACGCGACACATAAGTTATTG 59.909 41.667 15.93 0.00 0.00 1.90
2439 5045 3.369756 ACACGCGACACATAAGTTATTGG 59.630 43.478 15.93 0.00 0.00 3.16
2440 5046 3.369756 CACGCGACACATAAGTTATTGGT 59.630 43.478 15.93 0.00 0.00 3.67
2441 5047 3.998341 ACGCGACACATAAGTTATTGGTT 59.002 39.130 15.93 0.00 0.00 3.67
2442 5048 4.453136 ACGCGACACATAAGTTATTGGTTT 59.547 37.500 15.93 0.00 0.00 3.27
2443 5049 5.049267 ACGCGACACATAAGTTATTGGTTTT 60.049 36.000 15.93 0.00 0.00 2.43
2444 5050 5.854338 CGCGACACATAAGTTATTGGTTTTT 59.146 36.000 0.00 0.00 0.00 1.94
2445 5051 6.032042 CGCGACACATAAGTTATTGGTTTTTC 59.968 38.462 0.00 0.00 0.00 2.29
2446 5052 6.032042 GCGACACATAAGTTATTGGTTTTTCG 59.968 38.462 0.00 2.90 0.00 3.46
2447 5053 7.073265 CGACACATAAGTTATTGGTTTTTCGT 58.927 34.615 0.00 0.00 0.00 3.85
2448 5054 7.059033 CGACACATAAGTTATTGGTTTTTCGTG 59.941 37.037 0.00 0.00 0.00 4.35
2449 5055 7.932335 ACACATAAGTTATTGGTTTTTCGTGA 58.068 30.769 9.78 0.00 0.00 4.35
2450 5056 8.407064 ACACATAAGTTATTGGTTTTTCGTGAA 58.593 29.630 9.78 0.00 0.00 3.18
2451 5057 9.239002 CACATAAGTTATTGGTTTTTCGTGAAA 57.761 29.630 0.00 0.00 0.00 2.69
2452 5058 9.240159 ACATAAGTTATTGGTTTTTCGTGAAAC 57.760 29.630 0.00 7.54 38.49 2.78
2468 5074 5.283060 GTGAAACGACTTTATGAGCATGT 57.717 39.130 0.00 0.00 0.00 3.21
2469 5075 6.403333 GTGAAACGACTTTATGAGCATGTA 57.597 37.500 0.00 0.00 0.00 2.29
2470 5076 6.241385 GTGAAACGACTTTATGAGCATGTAC 58.759 40.000 0.00 0.00 0.00 2.90
2471 5077 5.929415 TGAAACGACTTTATGAGCATGTACA 59.071 36.000 0.00 0.00 0.00 2.90
2472 5078 6.425417 TGAAACGACTTTATGAGCATGTACAA 59.575 34.615 0.00 0.00 0.00 2.41
2473 5079 6.985188 AACGACTTTATGAGCATGTACAAT 57.015 33.333 0.00 0.00 0.00 2.71
2474 5080 8.487313 AAACGACTTTATGAGCATGTACAATA 57.513 30.769 0.00 0.00 0.00 1.90
2475 5081 8.487313 AACGACTTTATGAGCATGTACAATAA 57.513 30.769 0.00 0.00 0.00 1.40
2476 5082 7.906160 ACGACTTTATGAGCATGTACAATAAC 58.094 34.615 0.00 0.00 0.00 1.89
2477 5083 7.547722 ACGACTTTATGAGCATGTACAATAACA 59.452 33.333 0.00 0.00 0.00 2.41
2478 5084 8.387354 CGACTTTATGAGCATGTACAATAACAA 58.613 33.333 0.00 0.00 32.02 2.83
2479 5085 9.708222 GACTTTATGAGCATGTACAATAACAAG 57.292 33.333 0.00 0.00 32.02 3.16
2480 5086 9.448438 ACTTTATGAGCATGTACAATAACAAGA 57.552 29.630 0.00 0.00 32.02 3.02
2483 5089 7.870509 ATGAGCATGTACAATAACAAGATGT 57.129 32.000 0.00 0.00 32.02 3.06
2484 5090 8.962884 ATGAGCATGTACAATAACAAGATGTA 57.037 30.769 0.00 0.00 32.02 2.29
2485 5091 8.196802 TGAGCATGTACAATAACAAGATGTAC 57.803 34.615 0.00 8.04 46.01 2.90
2491 5097 7.571089 GTACAATAACAAGATGTACGTGTCA 57.429 36.000 0.00 0.00 40.01 3.58
2492 5098 8.009984 GTACAATAACAAGATGTACGTGTCAA 57.990 34.615 0.00 0.00 40.01 3.18
2493 5099 7.117241 ACAATAACAAGATGTACGTGTCAAG 57.883 36.000 0.00 0.00 40.01 3.02
2494 5100 6.704493 ACAATAACAAGATGTACGTGTCAAGT 59.296 34.615 0.00 0.00 40.01 3.16
2495 5101 7.225931 ACAATAACAAGATGTACGTGTCAAGTT 59.774 33.333 0.00 5.71 40.01 2.66
2496 5102 7.724305 ATAACAAGATGTACGTGTCAAGTTT 57.276 32.000 0.00 0.00 40.01 2.66
2497 5103 6.431198 AACAAGATGTACGTGTCAAGTTTT 57.569 33.333 0.00 0.00 40.01 2.43
2498 5104 6.431198 ACAAGATGTACGTGTCAAGTTTTT 57.569 33.333 0.00 0.00 36.57 1.94
2499 5105 6.255215 ACAAGATGTACGTGTCAAGTTTTTG 58.745 36.000 0.00 0.00 36.57 2.44
2500 5106 6.128117 ACAAGATGTACGTGTCAAGTTTTTGT 60.128 34.615 0.00 0.00 36.57 2.83
2501 5107 6.431198 AGATGTACGTGTCAAGTTTTTGTT 57.569 33.333 0.00 0.00 35.73 2.83
2502 5108 6.848451 AGATGTACGTGTCAAGTTTTTGTTT 58.152 32.000 0.00 0.00 35.73 2.83
2503 5109 6.745450 AGATGTACGTGTCAAGTTTTTGTTTG 59.255 34.615 0.00 0.00 35.73 2.93
2504 5110 5.998553 TGTACGTGTCAAGTTTTTGTTTGA 58.001 33.333 0.00 0.00 35.73 2.69
2505 5111 6.436261 TGTACGTGTCAAGTTTTTGTTTGAA 58.564 32.000 0.00 0.00 35.29 2.69
2506 5112 7.085116 TGTACGTGTCAAGTTTTTGTTTGAAT 58.915 30.769 0.00 0.00 35.29 2.57
2507 5113 7.595502 TGTACGTGTCAAGTTTTTGTTTGAATT 59.404 29.630 0.00 0.00 35.29 2.17
2508 5114 7.414814 ACGTGTCAAGTTTTTGTTTGAATTT 57.585 28.000 0.00 0.00 35.29 1.82
2509 5115 7.856556 ACGTGTCAAGTTTTTGTTTGAATTTT 58.143 26.923 0.00 0.00 35.29 1.82
2510 5116 8.338986 ACGTGTCAAGTTTTTGTTTGAATTTTT 58.661 25.926 0.00 0.00 35.29 1.94
2551 5157 8.586570 TGTTTAAAGCACATTTTCAATACCAG 57.413 30.769 0.00 0.00 32.01 4.00
2552 5158 7.655328 TGTTTAAAGCACATTTTCAATACCAGG 59.345 33.333 0.00 0.00 32.01 4.45
2553 5159 7.531857 TTAAAGCACATTTTCAATACCAGGA 57.468 32.000 0.00 0.00 32.01 3.86
2554 5160 5.649782 AAGCACATTTTCAATACCAGGAG 57.350 39.130 0.00 0.00 0.00 3.69
2555 5161 3.445096 AGCACATTTTCAATACCAGGAGC 59.555 43.478 0.00 0.00 0.00 4.70
2556 5162 3.731867 GCACATTTTCAATACCAGGAGCG 60.732 47.826 0.00 0.00 0.00 5.03
2557 5163 3.440173 CACATTTTCAATACCAGGAGCGT 59.560 43.478 0.00 0.00 0.00 5.07
2558 5164 3.440173 ACATTTTCAATACCAGGAGCGTG 59.560 43.478 0.00 0.00 0.00 5.34
2559 5165 1.448985 TTTCAATACCAGGAGCGTGC 58.551 50.000 0.00 0.00 0.00 5.34
2560 5166 0.739462 TTCAATACCAGGAGCGTGCG 60.739 55.000 0.00 0.00 0.00 5.34
2561 5167 2.511600 AATACCAGGAGCGTGCGC 60.512 61.111 8.67 8.67 42.33 6.09
2572 5178 4.465512 CGTGCGCTTCCATGTGCC 62.466 66.667 9.73 0.00 42.20 5.01
2573 5179 3.364441 GTGCGCTTCCATGTGCCA 61.364 61.111 9.73 0.00 42.20 4.92
2574 5180 2.596923 TGCGCTTCCATGTGCCAA 60.597 55.556 9.73 0.00 42.20 4.52
2575 5181 2.198969 TGCGCTTCCATGTGCCAAA 61.199 52.632 9.73 0.00 42.20 3.28
2576 5182 1.006337 GCGCTTCCATGTGCCAAAA 60.006 52.632 0.00 0.00 37.48 2.44
2577 5183 0.390209 GCGCTTCCATGTGCCAAAAT 60.390 50.000 0.00 0.00 37.48 1.82
2578 5184 1.352114 CGCTTCCATGTGCCAAAATG 58.648 50.000 0.00 0.00 0.00 2.32
2579 5185 1.081094 GCTTCCATGTGCCAAAATGC 58.919 50.000 0.00 0.00 0.00 3.56
2580 5186 1.729284 CTTCCATGTGCCAAAATGCC 58.271 50.000 0.00 0.00 0.00 4.40
2581 5187 1.002201 CTTCCATGTGCCAAAATGCCA 59.998 47.619 0.00 0.00 0.00 4.92
2582 5188 0.321021 TCCATGTGCCAAAATGCCAC 59.679 50.000 0.00 0.00 0.00 5.01
2583 5189 0.322322 CCATGTGCCAAAATGCCACT 59.678 50.000 0.00 0.00 0.00 4.00
2584 5190 1.673626 CCATGTGCCAAAATGCCACTC 60.674 52.381 0.00 0.00 0.00 3.51
2585 5191 1.274167 CATGTGCCAAAATGCCACTCT 59.726 47.619 0.00 0.00 0.00 3.24
2586 5192 0.961019 TGTGCCAAAATGCCACTCTC 59.039 50.000 0.00 0.00 0.00 3.20
2587 5193 0.244721 GTGCCAAAATGCCACTCTCC 59.755 55.000 0.00 0.00 0.00 3.71
2596 5202 6.536224 CCAAAATGCCACTCTCCAATTAATTC 59.464 38.462 0.00 0.00 0.00 2.17
2636 5242 7.738437 ATCAATACCAAGTTCAATTTCCCAT 57.262 32.000 0.00 0.00 0.00 4.00
2653 5259 0.373370 CATGGTTATGTCACGCGTGG 59.627 55.000 36.41 19.49 0.00 4.94
2658 5264 2.717139 TTATGTCACGCGTGGCCACA 62.717 55.000 37.81 32.18 33.48 4.17
2691 5297 4.394729 TCCTCGCAACCTCAGTTTATTTT 58.605 39.130 0.00 0.00 32.45 1.82
2692 5298 4.454504 TCCTCGCAACCTCAGTTTATTTTC 59.545 41.667 0.00 0.00 32.45 2.29
2695 5302 5.757886 TCGCAACCTCAGTTTATTTTCTTG 58.242 37.500 0.00 0.00 32.45 3.02
2709 5316 2.403252 TTCTTGAGAATCCGCCCTTC 57.597 50.000 0.00 0.00 0.00 3.46
2737 5344 7.603024 GGCTCTTTATTCATTAGTAGGCGTAAT 59.397 37.037 0.00 0.00 0.00 1.89
2738 5345 8.648968 GCTCTTTATTCATTAGTAGGCGTAATC 58.351 37.037 0.00 0.00 0.00 1.75
2739 5346 9.141400 CTCTTTATTCATTAGTAGGCGTAATCC 57.859 37.037 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 2075 1.197721 GGACGTCGTCGAGGTAAGAAA 59.802 52.381 19.61 0.00 40.62 2.52
75 2139 2.417933 CCGGAGAGAGCAAACAAATCTG 59.582 50.000 0.00 0.00 0.00 2.90
85 2150 0.324738 ACCAAGATCCGGAGAGAGCA 60.325 55.000 11.34 0.00 0.00 4.26
133 2199 2.680841 GTTGCCACACGAATAGCCAATA 59.319 45.455 0.00 0.00 0.00 1.90
144 2210 4.545610 ACATTGAATTAAGTTGCCACACG 58.454 39.130 0.00 0.00 0.00 4.49
157 2223 9.528018 AAACAACACGAAATAAGACATTGAATT 57.472 25.926 0.00 0.00 0.00 2.17
158 2224 9.528018 AAAACAACACGAAATAAGACATTGAAT 57.472 25.926 0.00 0.00 0.00 2.57
159 2225 8.802856 CAAAACAACACGAAATAAGACATTGAA 58.197 29.630 0.00 0.00 0.00 2.69
160 2226 7.043722 GCAAAACAACACGAAATAAGACATTGA 60.044 33.333 0.00 0.00 0.00 2.57
183 2249 0.662085 GAAACCAAACCGTACCGCAA 59.338 50.000 0.00 0.00 0.00 4.85
208 2274 1.405821 CATCACCACCGGTCTAGAGAC 59.594 57.143 2.59 0.75 44.04 3.36
244 2310 4.309933 GTTATAGCATTACCCCCACGTAC 58.690 47.826 0.00 0.00 0.00 3.67
301 2369 1.447838 CGCAATAGCCACTCACCGT 60.448 57.895 0.00 0.00 37.52 4.83
305 2373 0.613260 AAGACCGCAATAGCCACTCA 59.387 50.000 0.00 0.00 37.52 3.41
328 2399 2.483197 GCCATCGCCATGTCATGCA 61.483 57.895 7.35 0.00 0.00 3.96
340 2411 2.485426 GGGATACATGTGAATGCCATCG 59.515 50.000 9.11 0.00 34.01 3.84
405 2476 9.765795 CCTCTTATTTCTCTAATTGTATTCCGT 57.234 33.333 0.00 0.00 0.00 4.69
478 2552 7.134815 CAGTACAATGAAAGGACAACTGAAAG 58.865 38.462 0.00 0.00 36.13 2.62
577 2658 3.808174 GGTAAAGATTTGCCCTAGCTACG 59.192 47.826 1.32 0.00 40.80 3.51
598 2679 7.167635 CGCTAATTATGTAATACTCCTATGCGG 59.832 40.741 0.00 0.00 0.00 5.69
600 2681 9.239002 CTCGCTAATTATGTAATACTCCTATGC 57.761 37.037 0.00 0.00 0.00 3.14
678 2763 2.508526 AGTGGCTAGCTTTCCTTTGTG 58.491 47.619 15.72 0.00 0.00 3.33
688 2773 9.101325 TCCTATAAAATTATGTAGTGGCTAGCT 57.899 33.333 15.72 0.00 0.00 3.32
786 2875 9.941664 GGATACTCATTGAATTTGAACTGTATG 57.058 33.333 0.00 0.00 0.00 2.39
818 2907 7.814107 CGTTATGCTACGGGGTAATTCTATAAA 59.186 37.037 0.00 0.00 37.86 1.40
830 2944 0.249322 CCTGTCGTTATGCTACGGGG 60.249 60.000 6.72 4.29 41.67 5.73
837 2951 3.318017 CATACTAGGCCTGTCGTTATGC 58.682 50.000 17.99 0.00 0.00 3.14
848 2962 6.581171 AATTAGTACGTACCATACTAGGCC 57.419 41.667 21.80 0.00 36.68 5.19
858 2972 7.615790 CGAGAATCCAAAAATTAGTACGTACC 58.384 38.462 21.80 4.66 0.00 3.34
877 2996 2.558378 CACTGATGTGGATGCGAGAAT 58.442 47.619 0.00 0.00 40.33 2.40
879 2998 3.746900 CACTGATGTGGATGCGAGA 57.253 52.632 0.00 0.00 40.33 4.04
976 3095 1.529152 TAGGATGCGTGTGGTCGTGT 61.529 55.000 0.00 0.00 0.00 4.49
982 3101 1.337260 GCTAGGATAGGATGCGTGTGG 60.337 57.143 0.00 0.00 39.70 4.17
1013 3132 2.232941 AGAAAGATTGCACCAATGGCTG 59.767 45.455 0.00 0.00 33.90 4.85
1035 3154 0.108804 GTTGGCTCCTCGATCGTGAA 60.109 55.000 18.20 0.00 0.00 3.18
1062 3181 4.572909 TGGTCATCTTCTTGTGAGACATG 58.427 43.478 0.00 0.00 0.00 3.21
1627 3762 1.271379 ACACTACATCAAGGCACCACC 60.271 52.381 0.00 0.00 39.61 4.61
1638 3773 8.721478 TGCAAATAAGAAAGAGAACACTACATC 58.279 33.333 0.00 0.00 0.00 3.06
1654 3793 8.739039 ACACATAAACATAAGCTGCAAATAAGA 58.261 29.630 1.02 0.00 0.00 2.10
1663 3802 4.414852 GCACCACACATAAACATAAGCTG 58.585 43.478 0.00 0.00 0.00 4.24
1673 3815 2.660572 ACAACAAGGCACCACACATAA 58.339 42.857 0.00 0.00 0.00 1.90
1686 3861 7.693952 ACACTACATTTGAACACTACAACAAG 58.306 34.615 0.00 0.00 0.00 3.16
1690 3865 6.588204 AGGACACTACATTTGAACACTACAA 58.412 36.000 0.00 0.00 0.00 2.41
1700 3960 7.492669 ACTTATTCATCGAGGACACTACATTTG 59.507 37.037 0.00 0.00 0.00 2.32
1710 3970 6.043411 AGCAGTTTACTTATTCATCGAGGAC 58.957 40.000 0.00 0.00 0.00 3.85
1739 3999 7.744087 TGCCGATTGCTGTTATAAGAAATAT 57.256 32.000 0.00 0.00 42.00 1.28
1741 4001 6.449635 TTGCCGATTGCTGTTATAAGAAAT 57.550 33.333 0.00 0.00 42.00 2.17
1743 4003 6.449635 AATTGCCGATTGCTGTTATAAGAA 57.550 33.333 0.00 0.00 42.00 2.52
1744 4004 6.449635 AAATTGCCGATTGCTGTTATAAGA 57.550 33.333 0.00 0.00 42.00 2.10
1745 4005 6.019640 CCAAAATTGCCGATTGCTGTTATAAG 60.020 38.462 0.00 0.00 42.00 1.73
1746 4006 5.809562 CCAAAATTGCCGATTGCTGTTATAA 59.190 36.000 0.00 0.00 42.00 0.98
1747 4007 5.347342 CCAAAATTGCCGATTGCTGTTATA 58.653 37.500 0.00 0.00 42.00 0.98
1748 4008 4.183101 CCAAAATTGCCGATTGCTGTTAT 58.817 39.130 0.00 0.00 42.00 1.89
1749 4009 3.583806 CCAAAATTGCCGATTGCTGTTA 58.416 40.909 0.00 0.00 42.00 2.41
1750 4010 2.415776 CCAAAATTGCCGATTGCTGTT 58.584 42.857 0.00 0.00 42.00 3.16
1751 4011 1.940752 GCCAAAATTGCCGATTGCTGT 60.941 47.619 0.00 0.00 42.00 4.40
1752 4012 0.722848 GCCAAAATTGCCGATTGCTG 59.277 50.000 0.00 0.00 42.00 4.41
1754 4014 2.195922 CTAGCCAAAATTGCCGATTGC 58.804 47.619 0.00 0.00 41.77 3.56
1755 4015 3.181397 CACTAGCCAAAATTGCCGATTG 58.819 45.455 0.00 0.00 0.00 2.67
1770 4131 0.804933 CGGTAAACTCCGGCACTAGC 60.805 60.000 0.00 0.00 45.88 3.42
1779 4140 3.041508 AGAAAGCACTCGGTAAACTCC 57.958 47.619 0.00 0.00 0.00 3.85
1781 4142 5.401531 TGATAGAAAGCACTCGGTAAACT 57.598 39.130 0.00 0.00 0.00 2.66
1782 4143 4.567159 CCTGATAGAAAGCACTCGGTAAAC 59.433 45.833 0.00 0.00 0.00 2.01
1798 4328 3.071874 TGTTTGCCAACCTCCTGATAG 57.928 47.619 0.00 0.00 31.02 2.08
1807 4337 3.545822 CGCATTCTTTTTGTTTGCCAACC 60.546 43.478 0.00 0.00 31.20 3.77
1857 4387 3.804325 CCATTGCCGAGTTCTACAGTATG 59.196 47.826 0.00 0.00 46.00 2.39
1858 4388 3.704566 TCCATTGCCGAGTTCTACAGTAT 59.295 43.478 0.00 0.00 0.00 2.12
1859 4389 3.093814 TCCATTGCCGAGTTCTACAGTA 58.906 45.455 0.00 0.00 0.00 2.74
1860 4390 1.899814 TCCATTGCCGAGTTCTACAGT 59.100 47.619 0.00 0.00 0.00 3.55
1861 4391 2.166459 TCTCCATTGCCGAGTTCTACAG 59.834 50.000 0.00 0.00 0.00 2.74
1862 4392 2.166459 CTCTCCATTGCCGAGTTCTACA 59.834 50.000 0.00 0.00 0.00 2.74
1908 4441 2.499693 TCGAATGTTGTGGAGGCTGATA 59.500 45.455 0.00 0.00 0.00 2.15
1951 4513 1.692519 GTGGTGTAGACTGGTCCACTT 59.307 52.381 13.71 0.00 43.34 3.16
1952 4514 1.339097 GTGGTGTAGACTGGTCCACT 58.661 55.000 13.71 0.00 43.34 4.00
1965 4527 1.357272 TTAACTGGGCTGGGTGGTGT 61.357 55.000 0.00 0.00 0.00 4.16
1970 4532 2.856231 TGGATATTTAACTGGGCTGGGT 59.144 45.455 0.00 0.00 0.00 4.51
2033 4600 2.468777 GCAGAAAATGTGACGTGCAAAG 59.531 45.455 0.00 0.00 0.00 2.77
2036 4603 0.041400 CGCAGAAAATGTGACGTGCA 60.041 50.000 0.00 0.00 42.31 4.57
2038 4605 1.054348 CGCGCAGAAAATGTGACGTG 61.054 55.000 8.75 0.00 42.31 4.49
2040 4607 0.110867 TTCGCGCAGAAAATGTGACG 60.111 50.000 8.75 0.00 42.31 4.35
2044 4611 1.210155 GGCTTCGCGCAGAAAATGT 59.790 52.632 10.74 0.00 41.67 2.71
2100 4667 6.518493 TCCGTTTTATCTTGCCGATATAGTT 58.482 36.000 0.00 0.00 34.68 2.24
2102 4669 5.577164 CCTCCGTTTTATCTTGCCGATATAG 59.423 44.000 0.00 0.00 34.68 1.31
2106 4673 2.093128 ACCTCCGTTTTATCTTGCCGAT 60.093 45.455 0.00 0.00 36.11 4.18
2110 4677 2.706890 TCCACCTCCGTTTTATCTTGC 58.293 47.619 0.00 0.00 0.00 4.01
2121 4688 6.770785 TCTCCAAATTATATTTTCCACCTCCG 59.229 38.462 0.00 0.00 0.00 4.63
2123 4690 8.579863 CCATCTCCAAATTATATTTTCCACCTC 58.420 37.037 0.00 0.00 0.00 3.85
2129 4696 8.712228 ACCTCCCATCTCCAAATTATATTTTC 57.288 34.615 0.00 0.00 0.00 2.29
2139 4706 3.040655 TCGATACCTCCCATCTCCAAA 57.959 47.619 0.00 0.00 0.00 3.28
2198 4804 7.669722 AGCACCAACGGATTTCCAATATTATAT 59.330 33.333 0.00 0.00 35.14 0.86
2199 4805 7.001674 AGCACCAACGGATTTCCAATATTATA 58.998 34.615 0.00 0.00 35.14 0.98
2200 4806 5.833131 AGCACCAACGGATTTCCAATATTAT 59.167 36.000 0.00 0.00 35.14 1.28
2208 4814 0.526211 GGAAGCACCAACGGATTTCC 59.474 55.000 0.00 0.00 38.79 3.13
2209 4815 1.200020 CAGGAAGCACCAACGGATTTC 59.800 52.381 2.96 0.00 42.04 2.17
2210 4816 1.247567 CAGGAAGCACCAACGGATTT 58.752 50.000 2.96 0.00 42.04 2.17
2212 4818 1.002134 CCAGGAAGCACCAACGGAT 60.002 57.895 2.96 0.00 42.04 4.18
2214 4820 1.672356 CTCCAGGAAGCACCAACGG 60.672 63.158 0.00 0.96 42.04 4.44
2215 4821 2.328099 GCTCCAGGAAGCACCAACG 61.328 63.158 6.13 0.00 42.05 4.10
2216 4822 2.328099 CGCTCCAGGAAGCACCAAC 61.328 63.158 10.44 0.00 42.62 3.77
2217 4823 2.032528 CGCTCCAGGAAGCACCAA 59.967 61.111 10.44 0.00 42.62 3.67
2218 4824 4.704833 GCGCTCCAGGAAGCACCA 62.705 66.667 0.00 0.00 42.62 4.17
2219 4825 4.704833 TGCGCTCCAGGAAGCACC 62.705 66.667 9.73 4.18 42.62 5.01
2220 4826 3.426568 GTGCGCTCCAGGAAGCAC 61.427 66.667 25.39 25.39 46.31 4.40
2232 4838 8.739461 ACTTTAAAATATAATTTTAGCGTGCGC 58.261 29.630 8.67 8.67 42.33 6.09
2272 4878 7.908230 AGATATATGCGCCAAATTTTTGTTTG 58.092 30.769 4.18 0.00 38.50 2.93
2273 4879 7.043458 CGAGATATATGCGCCAAATTTTTGTTT 60.043 33.333 4.18 0.00 36.45 2.83
2274 4880 6.417635 CGAGATATATGCGCCAAATTTTTGTT 59.582 34.615 4.18 0.00 36.45 2.83
2275 4881 5.914635 CGAGATATATGCGCCAAATTTTTGT 59.085 36.000 4.18 0.00 36.45 2.83
2276 4882 6.086765 GTCGAGATATATGCGCCAAATTTTTG 59.913 38.462 4.18 0.00 37.90 2.44
2277 4883 6.142817 GTCGAGATATATGCGCCAAATTTTT 58.857 36.000 4.18 0.00 0.00 1.94
2278 4884 5.238432 TGTCGAGATATATGCGCCAAATTTT 59.762 36.000 4.18 0.00 0.00 1.82
2279 4885 4.754618 TGTCGAGATATATGCGCCAAATTT 59.245 37.500 4.18 0.00 0.00 1.82
2280 4886 4.314961 TGTCGAGATATATGCGCCAAATT 58.685 39.130 4.18 0.00 0.00 1.82
2281 4887 3.925379 TGTCGAGATATATGCGCCAAAT 58.075 40.909 4.18 0.00 0.00 2.32
2282 4888 3.378911 TGTCGAGATATATGCGCCAAA 57.621 42.857 4.18 0.00 0.00 3.28
2283 4889 3.592898 ATGTCGAGATATATGCGCCAA 57.407 42.857 4.18 0.00 0.00 4.52
2284 4890 3.592898 AATGTCGAGATATATGCGCCA 57.407 42.857 4.18 0.00 0.00 5.69
2285 4891 6.863645 ACATATAATGTCGAGATATATGCGCC 59.136 38.462 20.94 0.00 39.92 6.53
2286 4892 7.859613 ACATATAATGTCGAGATATATGCGC 57.140 36.000 20.94 0.00 39.92 6.09
2294 4900 8.943002 TGACGTGTATACATATAATGTCGAGAT 58.057 33.333 9.18 0.00 43.67 2.75
2295 4901 8.314143 TGACGTGTATACATATAATGTCGAGA 57.686 34.615 9.18 0.00 43.67 4.04
2296 4902 8.944212 TTGACGTGTATACATATAATGTCGAG 57.056 34.615 9.18 0.00 43.67 4.04
2297 4903 8.562052 ACTTGACGTGTATACATATAATGTCGA 58.438 33.333 9.18 5.70 43.67 4.20
2298 4904 8.723777 ACTTGACGTGTATACATATAATGTCG 57.276 34.615 9.18 7.69 43.67 4.35
2303 4909 9.872721 TCCAAAACTTGACGTGTATACATATAA 57.127 29.630 9.18 2.31 0.00 0.98
2304 4910 9.524106 CTCCAAAACTTGACGTGTATACATATA 57.476 33.333 9.18 0.00 0.00 0.86
2305 4911 8.255206 TCTCCAAAACTTGACGTGTATACATAT 58.745 33.333 9.18 0.00 0.00 1.78
2306 4912 7.604549 TCTCCAAAACTTGACGTGTATACATA 58.395 34.615 9.18 0.00 0.00 2.29
2307 4913 6.460781 TCTCCAAAACTTGACGTGTATACAT 58.539 36.000 9.18 0.00 0.00 2.29
2308 4914 5.845103 TCTCCAAAACTTGACGTGTATACA 58.155 37.500 0.08 0.08 0.00 2.29
2309 4915 6.774354 TTCTCCAAAACTTGACGTGTATAC 57.226 37.500 0.00 0.00 0.00 1.47
2310 4916 7.632721 GTTTTCTCCAAAACTTGACGTGTATA 58.367 34.615 0.00 0.00 45.53 1.47
2311 4917 6.492254 GTTTTCTCCAAAACTTGACGTGTAT 58.508 36.000 0.00 0.00 45.53 2.29
2312 4918 5.871539 GTTTTCTCCAAAACTTGACGTGTA 58.128 37.500 0.00 0.00 45.53 2.90
2313 4919 4.729595 GTTTTCTCCAAAACTTGACGTGT 58.270 39.130 0.00 0.00 45.53 4.49
2342 4948 6.223852 TGTCTTTTTACACAAGCCACAAAAA 58.776 32.000 0.00 0.00 0.00 1.94
2343 4949 5.784177 TGTCTTTTTACACAAGCCACAAAA 58.216 33.333 0.00 0.00 0.00 2.44
2344 4950 5.392767 TGTCTTTTTACACAAGCCACAAA 57.607 34.783 0.00 0.00 0.00 2.83
2345 4951 5.392767 TTGTCTTTTTACACAAGCCACAA 57.607 34.783 0.00 0.00 0.00 3.33
2346 4952 5.392767 TTTGTCTTTTTACACAAGCCACA 57.607 34.783 0.00 0.00 0.00 4.17
2347 4953 5.290885 CCTTTTGTCTTTTTACACAAGCCAC 59.709 40.000 0.00 0.00 36.35 5.01
2348 4954 5.186021 TCCTTTTGTCTTTTTACACAAGCCA 59.814 36.000 0.00 0.00 36.35 4.75
2349 4955 5.656480 TCCTTTTGTCTTTTTACACAAGCC 58.344 37.500 0.00 0.00 36.35 4.35
2350 4956 6.756542 ACATCCTTTTGTCTTTTTACACAAGC 59.243 34.615 0.00 0.00 36.35 4.01
2351 4957 8.340230 GACATCCTTTTGTCTTTTTACACAAG 57.660 34.615 0.00 0.00 42.22 3.16
2363 4969 6.564328 ACTTTTCACAAGACATCCTTTTGTC 58.436 36.000 0.00 0.00 45.15 3.18
2364 4970 6.530019 ACTTTTCACAAGACATCCTTTTGT 57.470 33.333 0.00 0.00 34.87 2.83
2365 4971 9.533253 AATTACTTTTCACAAGACATCCTTTTG 57.467 29.630 0.00 0.00 34.66 2.44
2391 4997 9.712305 TGAAAAAGACAAAATCCAGTGTTAAAA 57.288 25.926 0.00 0.00 0.00 1.52
2392 4998 9.145865 GTGAAAAAGACAAAATCCAGTGTTAAA 57.854 29.630 0.00 0.00 0.00 1.52
2393 4999 8.307483 TGTGAAAAAGACAAAATCCAGTGTTAA 58.693 29.630 0.00 0.00 0.00 2.01
2394 5000 7.757624 GTGTGAAAAAGACAAAATCCAGTGTTA 59.242 33.333 0.00 0.00 0.00 2.41
2395 5001 6.589907 GTGTGAAAAAGACAAAATCCAGTGTT 59.410 34.615 0.00 0.00 0.00 3.32
2396 5002 6.099341 GTGTGAAAAAGACAAAATCCAGTGT 58.901 36.000 0.00 0.00 0.00 3.55
2397 5003 5.229887 CGTGTGAAAAAGACAAAATCCAGTG 59.770 40.000 0.00 0.00 0.00 3.66
2398 5004 5.339990 CGTGTGAAAAAGACAAAATCCAGT 58.660 37.500 0.00 0.00 0.00 4.00
2399 5005 4.207019 GCGTGTGAAAAAGACAAAATCCAG 59.793 41.667 0.00 0.00 0.00 3.86
2400 5006 4.109050 GCGTGTGAAAAAGACAAAATCCA 58.891 39.130 0.00 0.00 0.00 3.41
2401 5007 3.179599 CGCGTGTGAAAAAGACAAAATCC 59.820 43.478 0.00 0.00 0.00 3.01
2402 5008 4.032355 TCGCGTGTGAAAAAGACAAAATC 58.968 39.130 5.77 0.00 0.00 2.17
2403 5009 3.789224 GTCGCGTGTGAAAAAGACAAAAT 59.211 39.130 5.77 0.00 0.00 1.82
2404 5010 3.165124 GTCGCGTGTGAAAAAGACAAAA 58.835 40.909 5.77 0.00 0.00 2.44
2405 5011 2.159824 TGTCGCGTGTGAAAAAGACAAA 59.840 40.909 5.77 0.00 35.94 2.83
2406 5012 1.732809 TGTCGCGTGTGAAAAAGACAA 59.267 42.857 5.77 0.00 35.94 3.18
2407 5013 1.061421 GTGTCGCGTGTGAAAAAGACA 59.939 47.619 5.77 0.00 36.43 3.41
2408 5014 1.061421 TGTGTCGCGTGTGAAAAAGAC 59.939 47.619 5.77 0.00 0.00 3.01
2409 5015 1.360820 TGTGTCGCGTGTGAAAAAGA 58.639 45.000 5.77 0.00 0.00 2.52
2410 5016 2.383298 ATGTGTCGCGTGTGAAAAAG 57.617 45.000 5.77 0.00 0.00 2.27
2411 5017 3.310227 ACTTATGTGTCGCGTGTGAAAAA 59.690 39.130 5.77 0.00 0.00 1.94
2412 5018 2.867368 ACTTATGTGTCGCGTGTGAAAA 59.133 40.909 5.77 0.00 0.00 2.29
2413 5019 2.475818 ACTTATGTGTCGCGTGTGAAA 58.524 42.857 5.77 0.00 0.00 2.69
2414 5020 2.143008 ACTTATGTGTCGCGTGTGAA 57.857 45.000 5.77 0.00 0.00 3.18
2415 5021 2.143008 AACTTATGTGTCGCGTGTGA 57.857 45.000 5.77 0.00 0.00 3.58
2416 5022 4.322934 CAATAACTTATGTGTCGCGTGTG 58.677 43.478 5.77 0.00 0.00 3.82
2417 5023 3.369756 CCAATAACTTATGTGTCGCGTGT 59.630 43.478 5.77 0.00 0.00 4.49
2418 5024 3.369756 ACCAATAACTTATGTGTCGCGTG 59.630 43.478 5.77 0.00 0.00 5.34
2419 5025 3.592059 ACCAATAACTTATGTGTCGCGT 58.408 40.909 5.77 0.00 0.00 6.01
2420 5026 4.593597 AACCAATAACTTATGTGTCGCG 57.406 40.909 0.00 0.00 0.00 5.87
2421 5027 6.032042 CGAAAAACCAATAACTTATGTGTCGC 59.968 38.462 0.00 0.00 0.00 5.19
2422 5028 7.059033 CACGAAAAACCAATAACTTATGTGTCG 59.941 37.037 0.00 0.00 0.00 4.35
2423 5029 8.071368 TCACGAAAAACCAATAACTTATGTGTC 58.929 33.333 0.00 0.00 0.00 3.67
2424 5030 7.932335 TCACGAAAAACCAATAACTTATGTGT 58.068 30.769 0.00 0.00 0.00 3.72
2425 5031 8.789881 TTCACGAAAAACCAATAACTTATGTG 57.210 30.769 0.00 0.00 0.00 3.21
2426 5032 9.240159 GTTTCACGAAAAACCAATAACTTATGT 57.760 29.630 0.00 0.00 33.86 2.29
2427 5033 8.414173 CGTTTCACGAAAAACCAATAACTTATG 58.586 33.333 10.35 0.00 46.05 1.90
2428 5034 8.496872 CGTTTCACGAAAAACCAATAACTTAT 57.503 30.769 10.35 0.00 46.05 1.73
2429 5035 7.895582 CGTTTCACGAAAAACCAATAACTTA 57.104 32.000 10.35 0.00 46.05 2.24
2430 5036 6.799786 CGTTTCACGAAAAACCAATAACTT 57.200 33.333 10.35 0.00 46.05 2.66
2445 5051 4.143115 ACATGCTCATAAAGTCGTTTCACG 60.143 41.667 0.00 0.00 44.19 4.35
2446 5052 5.283060 ACATGCTCATAAAGTCGTTTCAC 57.717 39.130 0.00 0.00 0.00 3.18
2447 5053 5.929415 TGTACATGCTCATAAAGTCGTTTCA 59.071 36.000 0.00 0.00 0.00 2.69
2448 5054 6.403333 TGTACATGCTCATAAAGTCGTTTC 57.597 37.500 0.00 0.00 0.00 2.78
2449 5055 6.795098 TTGTACATGCTCATAAAGTCGTTT 57.205 33.333 0.00 0.00 0.00 3.60
2450 5056 6.985188 ATTGTACATGCTCATAAAGTCGTT 57.015 33.333 0.00 0.00 0.00 3.85
2451 5057 7.547722 TGTTATTGTACATGCTCATAAAGTCGT 59.452 33.333 0.00 0.00 0.00 4.34
2452 5058 7.905126 TGTTATTGTACATGCTCATAAAGTCG 58.095 34.615 0.00 0.00 0.00 4.18
2453 5059 9.708222 CTTGTTATTGTACATGCTCATAAAGTC 57.292 33.333 0.00 0.00 0.00 3.01
2454 5060 9.448438 TCTTGTTATTGTACATGCTCATAAAGT 57.552 29.630 0.00 0.00 0.00 2.66
2457 5063 9.394767 ACATCTTGTTATTGTACATGCTCATAA 57.605 29.630 0.00 0.00 0.00 1.90
2458 5064 8.962884 ACATCTTGTTATTGTACATGCTCATA 57.037 30.769 0.00 0.00 0.00 2.15
2459 5065 7.870509 ACATCTTGTTATTGTACATGCTCAT 57.129 32.000 0.00 0.00 0.00 2.90
2460 5066 7.010091 CGTACATCTTGTTATTGTACATGCTCA 59.990 37.037 11.61 0.00 43.67 4.26
2461 5067 7.010183 ACGTACATCTTGTTATTGTACATGCTC 59.990 37.037 11.61 0.00 43.67 4.26
2462 5068 6.816640 ACGTACATCTTGTTATTGTACATGCT 59.183 34.615 11.61 0.00 43.67 3.79
2463 5069 6.899771 CACGTACATCTTGTTATTGTACATGC 59.100 38.462 11.61 0.00 43.67 4.06
2464 5070 7.959733 ACACGTACATCTTGTTATTGTACATG 58.040 34.615 11.61 9.29 43.67 3.21
2465 5071 7.815549 TGACACGTACATCTTGTTATTGTACAT 59.184 33.333 11.61 0.00 43.67 2.29
2466 5072 7.146648 TGACACGTACATCTTGTTATTGTACA 58.853 34.615 11.61 0.00 43.67 2.90
2467 5073 7.571089 TGACACGTACATCTTGTTATTGTAC 57.429 36.000 0.00 0.00 41.33 2.90
2468 5074 7.868922 ACTTGACACGTACATCTTGTTATTGTA 59.131 33.333 0.00 0.00 0.00 2.41
2469 5075 6.704493 ACTTGACACGTACATCTTGTTATTGT 59.296 34.615 0.00 0.00 0.00 2.71
2470 5076 7.117241 ACTTGACACGTACATCTTGTTATTG 57.883 36.000 0.00 0.00 0.00 1.90
2471 5077 7.724305 AACTTGACACGTACATCTTGTTATT 57.276 32.000 0.00 0.00 0.00 1.40
2472 5078 7.724305 AAACTTGACACGTACATCTTGTTAT 57.276 32.000 0.00 0.00 0.00 1.89
2473 5079 7.542534 AAAACTTGACACGTACATCTTGTTA 57.457 32.000 0.00 0.00 0.00 2.41
2474 5080 6.431198 AAAACTTGACACGTACATCTTGTT 57.569 33.333 0.00 0.00 0.00 2.83
2475 5081 6.128117 ACAAAAACTTGACACGTACATCTTGT 60.128 34.615 0.00 0.00 0.00 3.16
2476 5082 6.255215 ACAAAAACTTGACACGTACATCTTG 58.745 36.000 0.00 0.00 0.00 3.02
2477 5083 6.431198 ACAAAAACTTGACACGTACATCTT 57.569 33.333 0.00 0.00 0.00 2.40
2478 5084 6.431198 AACAAAAACTTGACACGTACATCT 57.569 33.333 0.00 0.00 0.00 2.90
2479 5085 6.743627 TCAAACAAAAACTTGACACGTACATC 59.256 34.615 0.00 0.00 0.00 3.06
2480 5086 6.613233 TCAAACAAAAACTTGACACGTACAT 58.387 32.000 0.00 0.00 0.00 2.29
2481 5087 5.998553 TCAAACAAAAACTTGACACGTACA 58.001 33.333 0.00 0.00 0.00 2.90
2482 5088 6.914760 TTCAAACAAAAACTTGACACGTAC 57.085 33.333 0.00 0.00 31.41 3.67
2483 5089 8.522178 AAATTCAAACAAAAACTTGACACGTA 57.478 26.923 0.00 0.00 31.41 3.57
2484 5090 7.414814 AAATTCAAACAAAAACTTGACACGT 57.585 28.000 0.00 0.00 31.41 4.49
2485 5091 8.706656 AAAAATTCAAACAAAAACTTGACACG 57.293 26.923 0.00 0.00 31.41 4.49
2525 5131 9.206870 CTGGTATTGAAAATGTGCTTTAAACAT 57.793 29.630 0.00 0.00 39.95 2.71
2526 5132 7.655328 CCTGGTATTGAAAATGTGCTTTAAACA 59.345 33.333 0.00 0.00 0.00 2.83
2527 5133 7.870445 TCCTGGTATTGAAAATGTGCTTTAAAC 59.130 33.333 0.00 0.00 0.00 2.01
2528 5134 7.957002 TCCTGGTATTGAAAATGTGCTTTAAA 58.043 30.769 0.00 0.00 0.00 1.52
2529 5135 7.531857 TCCTGGTATTGAAAATGTGCTTTAA 57.468 32.000 0.00 0.00 0.00 1.52
2530 5136 6.350110 GCTCCTGGTATTGAAAATGTGCTTTA 60.350 38.462 0.00 0.00 0.00 1.85
2531 5137 5.567423 GCTCCTGGTATTGAAAATGTGCTTT 60.567 40.000 0.00 0.00 0.00 3.51
2532 5138 4.082026 GCTCCTGGTATTGAAAATGTGCTT 60.082 41.667 0.00 0.00 0.00 3.91
2533 5139 3.445096 GCTCCTGGTATTGAAAATGTGCT 59.555 43.478 0.00 0.00 0.00 4.40
2534 5140 3.731867 CGCTCCTGGTATTGAAAATGTGC 60.732 47.826 0.00 0.00 0.00 4.57
2535 5141 3.440173 ACGCTCCTGGTATTGAAAATGTG 59.560 43.478 0.00 0.00 0.00 3.21
2536 5142 3.440173 CACGCTCCTGGTATTGAAAATGT 59.560 43.478 0.00 0.00 0.00 2.71
2537 5143 3.731867 GCACGCTCCTGGTATTGAAAATG 60.732 47.826 0.00 0.00 0.00 2.32
2538 5144 2.423538 GCACGCTCCTGGTATTGAAAAT 59.576 45.455 0.00 0.00 0.00 1.82
2539 5145 1.810151 GCACGCTCCTGGTATTGAAAA 59.190 47.619 0.00 0.00 0.00 2.29
2540 5146 1.448985 GCACGCTCCTGGTATTGAAA 58.551 50.000 0.00 0.00 0.00 2.69
2541 5147 0.739462 CGCACGCTCCTGGTATTGAA 60.739 55.000 0.00 0.00 0.00 2.69
2542 5148 1.153647 CGCACGCTCCTGGTATTGA 60.154 57.895 0.00 0.00 0.00 2.57
2543 5149 2.813179 GCGCACGCTCCTGGTATTG 61.813 63.158 7.96 0.00 38.26 1.90
2544 5150 2.511600 GCGCACGCTCCTGGTATT 60.512 61.111 7.96 0.00 38.26 1.89
2555 5161 4.465512 GGCACATGGAAGCGCACG 62.466 66.667 11.47 0.00 0.00 5.34
2556 5162 2.419057 TTTGGCACATGGAAGCGCAC 62.419 55.000 11.47 2.54 39.30 5.34
2557 5163 1.742324 TTTTGGCACATGGAAGCGCA 61.742 50.000 11.47 0.00 39.30 6.09
2558 5164 0.390209 ATTTTGGCACATGGAAGCGC 60.390 50.000 0.00 0.00 39.30 5.92
2559 5165 1.352114 CATTTTGGCACATGGAAGCG 58.648 50.000 0.00 0.00 39.30 4.68
2560 5166 1.081094 GCATTTTGGCACATGGAAGC 58.919 50.000 0.00 0.00 39.30 3.86
2561 5167 1.729284 GGCATTTTGGCACATGGAAG 58.271 50.000 0.00 0.00 43.14 3.46
2562 5168 3.931768 GGCATTTTGGCACATGGAA 57.068 47.368 0.00 0.00 43.14 3.53
2570 5176 0.968405 TTGGAGAGTGGCATTTTGGC 59.032 50.000 0.00 0.00 44.03 4.52
2571 5177 3.967332 AATTGGAGAGTGGCATTTTGG 57.033 42.857 0.00 0.00 0.00 3.28
2572 5178 7.325694 AGAATTAATTGGAGAGTGGCATTTTG 58.674 34.615 5.17 0.00 0.00 2.44
2573 5179 7.486407 AGAATTAATTGGAGAGTGGCATTTT 57.514 32.000 5.17 0.00 0.00 1.82
2574 5180 7.486407 AAGAATTAATTGGAGAGTGGCATTT 57.514 32.000 5.17 0.00 0.00 2.32
2575 5181 7.486407 AAAGAATTAATTGGAGAGTGGCATT 57.514 32.000 5.17 0.00 0.00 3.56
2576 5182 7.178983 TCAAAAGAATTAATTGGAGAGTGGCAT 59.821 33.333 5.17 0.00 0.00 4.40
2577 5183 6.493115 TCAAAAGAATTAATTGGAGAGTGGCA 59.507 34.615 5.17 0.00 0.00 4.92
2578 5184 6.808704 GTCAAAAGAATTAATTGGAGAGTGGC 59.191 38.462 5.17 0.00 0.00 5.01
2579 5185 8.115490 AGTCAAAAGAATTAATTGGAGAGTGG 57.885 34.615 5.17 0.00 0.00 4.00
2618 5224 3.586429 ACCATGGGAAATTGAACTTGGT 58.414 40.909 18.09 7.73 36.78 3.67
2627 5233 3.130340 GCGTGACATAACCATGGGAAATT 59.870 43.478 18.09 3.40 36.39 1.82
2636 5242 2.030401 GCCACGCGTGACATAACCA 61.030 57.895 39.10 0.00 0.00 3.67
2691 5297 1.208052 CTGAAGGGCGGATTCTCAAGA 59.792 52.381 0.00 0.00 0.00 3.02
2692 5298 1.661341 CTGAAGGGCGGATTCTCAAG 58.339 55.000 0.00 0.00 0.00 3.02
2695 5302 4.865865 CCTGAAGGGCGGATTCTC 57.134 61.111 0.00 0.00 0.00 2.87
2709 5316 5.406780 CGCCTACTAATGAATAAAGAGCCTG 59.593 44.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.