Multiple sequence alignment - TraesCS6B01G462700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G462700 chr6B 100.000 5806 0 0 1 5806 715682118 715676313 0.000000e+00 10722.0
1 TraesCS6B01G462700 chr6B 82.752 516 46 19 941 1443 703675183 703675668 2.500000e-113 420.0
2 TraesCS6B01G462700 chr6B 84.290 331 45 5 2189 2518 71978846 71979170 3.380000e-82 316.0
3 TraesCS6B01G462700 chr6B 90.217 184 17 1 1695 1878 16907910 16907728 7.520000e-59 239.0
4 TraesCS6B01G462700 chr6B 88.268 179 18 2 1695 1873 38550257 38550432 1.640000e-50 211.0
5 TraesCS6B01G462700 chr6B 80.783 281 34 11 1954 2229 38550425 38550690 9.870000e-48 202.0
6 TraesCS6B01G462700 chr6B 80.695 259 29 12 1954 2207 16907740 16907498 1.290000e-41 182.0
7 TraesCS6B01G462700 chr6D 90.762 1981 131 34 2861 4824 469536724 469534779 0.000000e+00 2597.0
8 TraesCS6B01G462700 chr6D 84.423 1836 180 56 1 1768 469539229 469537432 0.000000e+00 1709.0
9 TraesCS6B01G462700 chr6D 90.601 766 35 5 4825 5556 469534824 469534062 0.000000e+00 981.0
10 TraesCS6B01G462700 chr6D 92.956 653 41 3 1954 2602 469537372 469536721 0.000000e+00 946.0
11 TraesCS6B01G462700 chr6D 94.048 252 12 3 5556 5806 469534008 469533759 4.250000e-101 379.0
12 TraesCS6B01G462700 chr6D 82.492 297 28 5 1369 1641 60795646 60795942 7.520000e-59 239.0
13 TraesCS6B01G462700 chr6D 96.875 96 2 1 1869 1964 159020654 159020748 6.020000e-35 159.0
14 TraesCS6B01G462700 chr6D 97.826 92 2 0 1868 1959 464673605 464673696 6.020000e-35 159.0
15 TraesCS6B01G462700 chr6A 84.542 2096 236 59 3280 5315 614587801 614585734 0.000000e+00 1995.0
16 TraesCS6B01G462700 chr6A 84.686 1750 164 56 1 1715 614590455 614588775 0.000000e+00 1652.0
17 TraesCS6B01G462700 chr6A 81.600 250 37 5 1391 1639 195031203 195031444 1.280000e-46 198.0
18 TraesCS6B01G462700 chr6A 85.621 153 21 1 5655 5806 614584275 614584123 6.020000e-35 159.0
19 TraesCS6B01G462700 chr6A 80.851 141 21 4 2021 2161 614588670 614588536 7.960000e-19 106.0
20 TraesCS6B01G462700 chr7B 94.704 642 33 1 1958 2599 139398132 139398772 0.000000e+00 996.0
21 TraesCS6B01G462700 chr7B 83.274 281 39 6 2240 2518 593845424 593845150 9.660000e-63 252.0
22 TraesCS6B01G462700 chr7B 89.130 184 19 1 1695 1878 59712522 59712704 1.630000e-55 228.0
23 TraesCS6B01G462700 chr7B 88.587 184 20 1 1695 1878 477875000 477875182 7.570000e-54 222.0
24 TraesCS6B01G462700 chr7B 80.576 278 34 11 1954 2226 59712692 59712954 4.590000e-46 196.0
25 TraesCS6B01G462700 chr7B 95.960 99 2 2 1870 1966 412543672 412543770 6.020000e-35 159.0
26 TraesCS6B01G462700 chr7B 95.161 62 3 0 1815 1876 139398072 139398133 1.330000e-16 99.0
27 TraesCS6B01G462700 chr5A 81.763 817 122 17 3396 4207 552590411 552591205 0.000000e+00 658.0
28 TraesCS6B01G462700 chr5A 91.176 272 23 1 2601 2872 410800880 410800610 9.190000e-98 368.0
29 TraesCS6B01G462700 chr5A 94.505 91 5 0 3176 3266 519884863 519884773 2.180000e-29 141.0
30 TraesCS6B01G462700 chr5D 81.280 828 131 17 3396 4218 432443680 432444488 0.000000e+00 649.0
31 TraesCS6B01G462700 chr5D 81.633 294 30 7 1372 1641 471426119 471425826 7.570000e-54 222.0
32 TraesCS6B01G462700 chr2A 81.350 815 125 16 3396 4207 753471477 753470687 6.340000e-179 638.0
33 TraesCS6B01G462700 chr2A 79.545 220 30 10 1439 1655 18864609 18864816 6.060000e-30 143.0
34 TraesCS6B01G462700 chr4A 81.250 816 125 18 3396 4207 102390806 102390015 8.210000e-178 634.0
35 TraesCS6B01G462700 chr4A 92.278 259 18 2 2601 2859 448512724 448512980 3.310000e-97 366.0
36 TraesCS6B01G462700 chr4A 80.478 251 40 5 1390 1639 493429418 493429176 3.570000e-42 183.0
37 TraesCS6B01G462700 chr4A 95.098 102 4 1 1861 1962 650851309 650851209 6.020000e-35 159.0
38 TraesCS6B01G462700 chr4A 95.098 102 4 1 1861 1962 650861512 650861412 6.020000e-35 159.0
39 TraesCS6B01G462700 chr4A 85.246 61 8 1 473 532 539823492 539823552 1.750000e-05 62.1
40 TraesCS6B01G462700 chr5B 82.685 514 48 22 941 1443 37791739 37791256 9.000000e-113 418.0
41 TraesCS6B01G462700 chr5B 92.664 259 18 1 2601 2859 450758473 450758730 7.110000e-99 372.0
42 TraesCS6B01G462700 chr5B 84.643 280 37 4 2240 2518 381220822 381220548 2.060000e-69 274.0
43 TraesCS6B01G462700 chr5B 98.925 93 1 0 1868 1960 417444287 417444379 3.600000e-37 167.0
44 TraesCS6B01G462700 chr5B 95.556 90 2 2 3176 3264 138777619 138777531 6.060000e-30 143.0
45 TraesCS6B01G462700 chr4D 92.748 262 18 1 2601 2862 16920682 16920422 1.530000e-100 377.0
46 TraesCS6B01G462700 chr4D 91.791 268 20 2 2596 2862 122202368 122202102 7.110000e-99 372.0
47 TraesCS6B01G462700 chr4D 93.548 93 5 1 3171 3262 28237803 28237895 2.820000e-28 137.0
48 TraesCS6B01G462700 chr3A 92.395 263 19 1 2601 2863 743686391 743686130 1.980000e-99 374.0
49 TraesCS6B01G462700 chr3A 91.386 267 21 2 2601 2866 41103265 41103000 1.190000e-96 364.0
50 TraesCS6B01G462700 chr3A 85.047 107 14 2 3017 3121 620991 621097 2.210000e-19 108.0
51 TraesCS6B01G462700 chr7D 91.698 265 21 1 2595 2859 553216463 553216726 3.310000e-97 366.0
52 TraesCS6B01G462700 chr7D 94.231 104 2 4 1870 1972 27810504 27810404 7.790000e-34 156.0
53 TraesCS6B01G462700 chr7D 95.349 86 4 0 3176 3261 118151604 118151689 2.820000e-28 137.0
54 TraesCS6B01G462700 chr7A 91.635 263 21 1 2601 2863 693403486 693403225 4.280000e-96 363.0
55 TraesCS6B01G462700 chr7A 92.593 108 5 3 1873 1978 126551990 126551884 1.010000e-32 152.0
56 TraesCS6B01G462700 chr2B 87.789 303 27 2 1151 1443 661841879 661842181 4.310000e-91 346.0
57 TraesCS6B01G462700 chr2B 89.130 184 19 1 1695 1878 110592032 110592214 1.630000e-55 228.0
58 TraesCS6B01G462700 chr2B 89.571 163 16 1 941 1102 661841698 661841860 7.630000e-49 206.0
59 TraesCS6B01G462700 chr2B 80.287 279 35 11 1954 2227 110592202 110592465 5.940000e-45 193.0
60 TraesCS6B01G462700 chr2B 92.708 96 6 1 3167 3262 691994689 691994783 2.820000e-28 137.0
61 TraesCS6B01G462700 chr2D 83.446 296 26 6 1369 1641 29139770 29140065 2.690000e-63 254.0
62 TraesCS6B01G462700 chr2D 94.231 104 5 1 1860 1962 22958491 22958388 2.170000e-34 158.0
63 TraesCS6B01G462700 chr2D 94.624 93 2 3 3176 3267 420176093 420176003 2.180000e-29 141.0
64 TraesCS6B01G462700 chr1B 79.817 327 53 9 2260 2578 601494625 601494946 5.850000e-55 226.0
65 TraesCS6B01G462700 chr1B 88.043 184 21 1 1695 1878 601493924 601494106 3.520000e-52 217.0
66 TraesCS6B01G462700 chr1B 87.500 184 22 1 1695 1878 114006995 114006813 1.640000e-50 211.0
67 TraesCS6B01G462700 chr1B 81.071 280 33 15 1954 2228 114006825 114006561 7.630000e-49 206.0
68 TraesCS6B01G462700 chr1B 81.053 285 30 10 1381 1641 637285085 637284801 7.630000e-49 206.0
69 TraesCS6B01G462700 chr1B 80.287 279 35 11 1954 2227 601494094 601494357 5.940000e-45 193.0
70 TraesCS6B01G462700 chr4B 80.592 304 35 5 1362 1641 11348654 11348351 4.560000e-51 213.0
71 TraesCS6B01G462700 chr4B 86.503 163 21 1 1359 1521 625129215 625129376 1.660000e-40 178.0
72 TraesCS6B01G462700 chr4B 93.617 94 5 1 3173 3265 91298402 91298309 7.850000e-29 139.0
73 TraesCS6B01G462700 chr4B 93.478 92 6 0 3173 3264 432817380 432817289 2.820000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G462700 chr6B 715676313 715682118 5805 True 10722.0 10722 100.000000 1 5806 1 chr6B.!!$R1 5805
1 TraesCS6B01G462700 chr6D 469533759 469539229 5470 True 1322.4 2597 90.558000 1 5806 5 chr6D.!!$R1 5805
2 TraesCS6B01G462700 chr6A 614584123 614590455 6332 True 978.0 1995 83.925000 1 5806 4 chr6A.!!$R1 5805
3 TraesCS6B01G462700 chr7B 139398072 139398772 700 False 547.5 996 94.932500 1815 2599 2 chr7B.!!$F4 784
4 TraesCS6B01G462700 chr5A 552590411 552591205 794 False 658.0 658 81.763000 3396 4207 1 chr5A.!!$F1 811
5 TraesCS6B01G462700 chr5D 432443680 432444488 808 False 649.0 649 81.280000 3396 4218 1 chr5D.!!$F1 822
6 TraesCS6B01G462700 chr2A 753470687 753471477 790 True 638.0 638 81.350000 3396 4207 1 chr2A.!!$R1 811
7 TraesCS6B01G462700 chr4A 102390015 102390806 791 True 634.0 634 81.250000 3396 4207 1 chr4A.!!$R1 811
8 TraesCS6B01G462700 chr1B 601493924 601494946 1022 False 212.0 226 82.715667 1695 2578 3 chr1B.!!$F1 883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 806 0.318120 CCAACAGCGAAGGCCAAATT 59.682 50.0 5.01 0.0 41.24 1.82 F
1020 1065 0.325933 TGATGTTCTCCAGCCAGGTG 59.674 55.0 0.00 0.0 39.02 4.00 F
2607 2967 0.323725 TGAAAGGCATTGCTCCCTCC 60.324 55.0 8.82 0.0 0.00 4.30 F
3776 4208 0.108186 TTGCTGTCATCGGTAGCCTG 60.108 55.0 0.00 0.0 36.64 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1753 1853 0.543277 CAGCATTCCTAGTGCAGGGA 59.457 55.0 6.59 0.0 45.58 4.20 R
2844 3204 0.395311 AGTATTCCCTCCGTCTGCGA 60.395 55.0 0.00 0.0 41.33 5.10 R
4159 4594 0.179179 GCTTCGCTCAATCTGTTGGC 60.179 55.0 0.00 0.0 35.99 4.52 R
4849 5333 0.032952 GGCACTCGGTTACAGACACA 59.967 55.0 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.292292 TCGTTTATGTTTTGACAGGAAATACG 58.708 34.615 0.00 0.00 0.00 3.06
32 33 5.651172 TTTGACAGGAAATACGCATATCG 57.349 39.130 0.00 0.00 45.38 2.92
33 34 3.057019 TGACAGGAAATACGCATATCGC 58.943 45.455 0.00 0.00 43.23 4.58
37 38 1.128692 GGAAATACGCATATCGCCTGC 59.871 52.381 0.00 0.00 43.23 4.85
38 39 1.128692 GAAATACGCATATCGCCTGCC 59.871 52.381 0.00 0.00 43.23 4.85
69 73 2.983592 CAGGTCGTTTGCACCCCC 60.984 66.667 0.00 0.00 33.96 5.40
90 94 6.227522 CCCCCTTAAAAACGATCAAAACAAT 58.772 36.000 0.00 0.00 0.00 2.71
93 97 9.430623 CCCCTTAAAAACGATCAAAACAATTAT 57.569 29.630 0.00 0.00 0.00 1.28
121 125 9.278978 TGCAACATAAACAATTCAAGACTACTA 57.721 29.630 0.00 0.00 0.00 1.82
202 206 9.713740 GAACAATAGCAAATGTCTTCTTAGATG 57.286 33.333 0.00 0.00 31.86 2.90
224 228 4.051237 GGTTCCTCAAAGCACAAAATCAC 58.949 43.478 0.00 0.00 35.39 3.06
227 231 2.364970 CCTCAAAGCACAAAATCACCCA 59.635 45.455 0.00 0.00 0.00 4.51
229 233 4.053295 CTCAAAGCACAAAATCACCCAAG 58.947 43.478 0.00 0.00 0.00 3.61
230 234 3.703556 TCAAAGCACAAAATCACCCAAGA 59.296 39.130 0.00 0.00 0.00 3.02
231 235 4.344679 TCAAAGCACAAAATCACCCAAGAT 59.655 37.500 0.00 0.00 0.00 2.40
247 258 9.321562 TCACCCAAGATATTTTCTATTTCGTAC 57.678 33.333 0.00 0.00 33.05 3.67
250 261 8.774586 CCCAAGATATTTTCTATTTCGTACCAG 58.225 37.037 0.00 0.00 33.05 4.00
252 263 9.542462 CAAGATATTTTCTATTTCGTACCAGGA 57.458 33.333 0.00 0.00 33.05 3.86
269 280 4.376340 CAGGATGGAGTTTTTGGCATAC 57.624 45.455 0.00 0.00 0.00 2.39
270 281 4.019174 CAGGATGGAGTTTTTGGCATACT 58.981 43.478 0.00 0.00 0.00 2.12
271 282 5.192927 CAGGATGGAGTTTTTGGCATACTA 58.807 41.667 0.00 0.00 0.00 1.82
273 284 6.322201 CAGGATGGAGTTTTTGGCATACTATT 59.678 38.462 0.00 0.00 0.00 1.73
274 285 6.547510 AGGATGGAGTTTTTGGCATACTATTC 59.452 38.462 0.00 0.00 0.00 1.75
276 287 7.719633 GGATGGAGTTTTTGGCATACTATTCTA 59.280 37.037 0.00 0.00 0.00 2.10
278 289 8.450578 TGGAGTTTTTGGCATACTATTCTATG 57.549 34.615 0.00 0.00 0.00 2.23
279 290 8.271458 TGGAGTTTTTGGCATACTATTCTATGA 58.729 33.333 0.00 0.00 0.00 2.15
285 296 7.452880 TTGGCATACTATTCTATGAAATGGC 57.547 36.000 0.00 8.39 38.49 4.40
286 297 5.945784 TGGCATACTATTCTATGAAATGGCC 59.054 40.000 0.00 0.00 37.56 5.36
287 298 5.065218 GGCATACTATTCTATGAAATGGCCG 59.935 44.000 0.00 0.00 33.69 6.13
288 299 5.447818 GCATACTATTCTATGAAATGGCCGC 60.448 44.000 0.00 0.00 0.00 6.53
289 300 4.357918 ACTATTCTATGAAATGGCCGCT 57.642 40.909 0.00 0.00 0.00 5.52
294 312 4.370364 TCTATGAAATGGCCGCTTTTTC 57.630 40.909 0.00 5.83 0.00 2.29
307 325 5.288472 GGCCGCTTTTTCAACATAACATAAG 59.712 40.000 0.00 0.00 0.00 1.73
311 329 8.973378 CCGCTTTTTCAACATAACATAAGAAAA 58.027 29.630 0.00 0.00 34.36 2.29
337 355 8.835467 TCATTTTTGTAACTTGAAAGTCTTCG 57.165 30.769 0.00 0.00 38.57 3.79
339 357 8.734030 CATTTTTGTAACTTGAAAGTCTTCGTC 58.266 33.333 0.00 0.00 38.57 4.20
379 397 6.597562 AGAAGGCGTACATATTTTATCCCAA 58.402 36.000 0.00 0.00 0.00 4.12
385 403 7.336931 GGCGTACATATTTTATCCCAAGATCAT 59.663 37.037 0.00 0.00 33.67 2.45
401 421 7.332678 CCCAAGATCATTTTCTTTCATTTGACC 59.667 37.037 0.00 0.00 33.69 4.02
404 424 9.485206 AAGATCATTTTCTTTCATTTGACCAAG 57.515 29.630 0.00 0.00 31.94 3.61
454 474 4.481463 ACGCCAAACAAACAATATAGTGC 58.519 39.130 0.00 0.00 0.00 4.40
457 477 6.094881 ACGCCAAACAAACAATATAGTGCTAT 59.905 34.615 0.00 0.00 0.00 2.97
458 478 6.632834 CGCCAAACAAACAATATAGTGCTATC 59.367 38.462 0.00 0.00 0.00 2.08
463 483 7.639162 ACAAACAATATAGTGCTATCGCTAC 57.361 36.000 0.00 0.00 38.04 3.58
522 542 5.755861 GGATGTAGGAAGAAGAAGATTTCGG 59.244 44.000 0.00 0.00 34.02 4.30
537 557 1.816074 TTCGGCGCCCCAAATATATC 58.184 50.000 23.46 0.00 0.00 1.63
593 613 4.643463 TCCTTACACGCTTTACATTTGGA 58.357 39.130 0.00 0.00 0.00 3.53
740 767 2.747822 GGCAGCTGAGTCATGTGCG 61.748 63.158 20.43 5.84 34.86 5.34
766 793 1.601759 CCCACCTGTCAGCCAACAG 60.602 63.158 8.72 8.72 45.10 3.16
778 805 1.966762 CCAACAGCGAAGGCCAAAT 59.033 52.632 5.01 0.00 41.24 2.32
779 806 0.318120 CCAACAGCGAAGGCCAAATT 59.682 50.000 5.01 0.00 41.24 1.82
780 807 1.543802 CCAACAGCGAAGGCCAAATTA 59.456 47.619 5.01 0.00 41.24 1.40
781 808 2.029470 CCAACAGCGAAGGCCAAATTAA 60.029 45.455 5.01 0.00 41.24 1.40
782 809 3.553922 CCAACAGCGAAGGCCAAATTAAA 60.554 43.478 5.01 0.00 41.24 1.52
946 991 4.664677 GATCCATCCGTCCGGCCG 62.665 72.222 21.04 21.04 34.68 6.13
978 1023 3.474570 CGGAGCAGGGGAAGGAGG 61.475 72.222 0.00 0.00 0.00 4.30
984 1029 4.348495 AGGGGAAGGAGGCGGGAA 62.348 66.667 0.00 0.00 0.00 3.97
987 1032 2.272471 GGAAGGAGGCGGGAAAGG 59.728 66.667 0.00 0.00 0.00 3.11
991 1036 3.798511 GGAGGCGGGAAAGGGGAG 61.799 72.222 0.00 0.00 0.00 4.30
1020 1065 0.325933 TGATGTTCTCCAGCCAGGTG 59.674 55.000 0.00 0.00 39.02 4.00
1095 1152 2.033602 CCCAACAAGGTCGGTCCC 59.966 66.667 0.00 0.00 36.75 4.46
1096 1153 2.526046 CCCAACAAGGTCGGTCCCT 61.526 63.158 0.00 0.00 36.75 4.20
1101 1158 2.039137 AAGGTCGGTCCCTCCTCC 59.961 66.667 0.63 0.00 36.75 4.30
1102 1159 2.559114 AAGGTCGGTCCCTCCTCCT 61.559 63.158 0.63 0.00 38.88 3.69
1103 1160 2.039137 GGTCGGTCCCTCCTCCTT 59.961 66.667 0.00 0.00 0.00 3.36
1104 1161 2.359967 GGTCGGTCCCTCCTCCTTG 61.360 68.421 0.00 0.00 0.00 3.61
1130 1187 2.370281 TTCTTGCGAGATGTGTCCTC 57.630 50.000 3.98 0.00 0.00 3.71
1311 1368 1.097547 GTGAGGATTCACCGGCCATG 61.098 60.000 0.00 0.00 46.47 3.66
1312 1369 2.124151 AGGATTCACCGGCCATGC 60.124 61.111 0.00 0.00 44.74 4.06
1314 1371 4.256090 GATTCACCGGCCATGCGC 62.256 66.667 0.00 0.00 0.00 6.09
1333 1404 2.833582 TCCGGGCTCGTCTGGATC 60.834 66.667 4.71 0.00 37.28 3.36
1340 1411 2.010582 GCTCGTCTGGATCGGCTTCT 62.011 60.000 0.00 0.00 0.00 2.85
1356 1427 2.226674 GCTTCTTACCCTGCTGTTGTTC 59.773 50.000 0.00 0.00 0.00 3.18
1357 1428 2.163818 TCTTACCCTGCTGTTGTTCG 57.836 50.000 0.00 0.00 0.00 3.95
1524 1600 5.991328 TTTAATCGAGTTCCAGATGCATC 57.009 39.130 19.37 19.37 0.00 3.91
1555 1654 2.582272 TCCATTGCTGGATGTTGGC 58.418 52.632 0.00 0.00 46.95 4.52
1582 1681 2.016318 TGGGATTTGTCTAATGCTGCG 58.984 47.619 0.00 0.00 35.15 5.18
1595 1694 1.070821 TGCTGCGACTTCAATCTTCG 58.929 50.000 0.00 0.00 35.82 3.79
1632 1731 0.466543 TTGGCTGTTGGTACGACAGT 59.533 50.000 21.75 0.00 44.88 3.55
1646 1745 7.833786 TGGTACGACAGTGTAAGATTAATTCT 58.166 34.615 0.00 0.00 35.70 2.40
1667 1766 4.532126 TCTGTAATTGAGTCCCAGATGTGT 59.468 41.667 0.00 0.00 0.00 3.72
1675 1774 4.349636 TGAGTCCCAGATGTGTTTTAGGAA 59.650 41.667 0.00 0.00 0.00 3.36
1722 1822 5.384336 TGTGGCCATTGCTGTGTATATTAT 58.616 37.500 9.72 0.00 37.74 1.28
1753 1853 6.289064 AGATTCGTCAAACCTTACAAGTTCT 58.711 36.000 0.00 0.00 0.00 3.01
1754 1854 5.978934 TTCGTCAAACCTTACAAGTTCTC 57.021 39.130 0.00 0.00 0.00 2.87
1755 1855 4.374399 TCGTCAAACCTTACAAGTTCTCC 58.626 43.478 0.00 0.00 0.00 3.71
1765 1865 1.625818 ACAAGTTCTCCCTGCACTAGG 59.374 52.381 0.00 0.00 46.88 3.02
1775 1875 1.015109 CTGCACTAGGAATGCTGCTG 58.985 55.000 0.00 0.32 43.77 4.41
1788 1888 0.449388 GCTGCTGGCTATCACAACAC 59.551 55.000 0.00 0.00 38.06 3.32
1790 1890 1.736126 CTGCTGGCTATCACAACACTG 59.264 52.381 0.00 0.00 0.00 3.66
1797 1897 2.030893 GCTATCACAACACTGCAAGCAA 60.031 45.455 0.00 0.00 37.60 3.91
1801 1901 4.227512 TCACAACACTGCAAGCAATTAG 57.772 40.909 0.00 0.00 37.60 1.73
1803 1903 3.976942 CACAACACTGCAAGCAATTAGAC 59.023 43.478 0.00 0.00 37.60 2.59
1810 1910 2.288666 GCAAGCAATTAGACGATGGGA 58.711 47.619 0.00 0.00 0.00 4.37
1876 1980 7.002879 TGAGGGACAGTAGTGGAATATACTAC 58.997 42.308 1.92 6.27 46.82 2.73
1884 1988 4.664392 AGTGGAATATACTACTCCCTCCG 58.336 47.826 0.00 0.00 0.00 4.63
1885 1989 4.106019 AGTGGAATATACTACTCCCTCCGT 59.894 45.833 0.00 0.00 0.00 4.69
1886 1990 5.311649 AGTGGAATATACTACTCCCTCCGTA 59.688 44.000 0.00 0.00 0.00 4.02
1887 1991 6.006449 GTGGAATATACTACTCCCTCCGTAA 58.994 44.000 0.00 0.00 0.00 3.18
1888 1992 6.491403 GTGGAATATACTACTCCCTCCGTAAA 59.509 42.308 0.00 0.00 0.00 2.01
1889 1993 6.491403 TGGAATATACTACTCCCTCCGTAAAC 59.509 42.308 0.00 0.00 0.00 2.01
1890 1994 6.718912 GGAATATACTACTCCCTCCGTAAACT 59.281 42.308 0.00 0.00 0.00 2.66
1891 1995 7.885399 GGAATATACTACTCCCTCCGTAAACTA 59.115 40.741 0.00 0.00 0.00 2.24
1892 1996 9.289782 GAATATACTACTCCCTCCGTAAACTAA 57.710 37.037 0.00 0.00 0.00 2.24
1893 1997 9.819754 AATATACTACTCCCTCCGTAAACTAAT 57.180 33.333 0.00 0.00 0.00 1.73
1898 2002 9.294614 ACTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
1899 2003 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
1900 2004 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1901 2005 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1902 2006 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
1903 2007 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
1904 2008 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
1905 2009 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
1906 2010 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
1907 2011 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
1908 2012 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
1922 2026 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
1923 2027 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
1924 2028 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
1925 2029 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
1926 2030 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
1955 2059 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
1957 2061 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
2015 2120 4.608948 AGTATGGACTGGCTAAGCATAC 57.391 45.455 0.00 0.00 34.50 2.39
2113 2223 3.313526 CAGGGCGATATGTTTCTCCAAAG 59.686 47.826 0.00 0.00 0.00 2.77
2350 2698 3.820467 TGTTAGTACAGCAATGCAAGCTT 59.180 39.130 13.67 0.00 41.14 3.74
2416 2767 3.419732 AATTGGCTATTTGGGGGACAT 57.580 42.857 0.00 0.00 0.00 3.06
2518 2877 1.338337 AGAATACCGTGCCTCTCATCG 59.662 52.381 0.00 0.00 0.00 3.84
2532 2891 2.160219 TCTCATCGCAGTGCAAACAATC 59.840 45.455 16.83 0.00 0.00 2.67
2541 2900 4.321156 GCAGTGCAAACAATCCAATAGTGA 60.321 41.667 11.09 0.00 0.00 3.41
2599 2959 5.701750 TCAATCAACCATTTGAAAGGCATTG 59.298 36.000 0.00 0.29 45.01 2.82
2600 2960 3.401182 TCAACCATTTGAAAGGCATTGC 58.599 40.909 0.00 0.00 38.87 3.56
2601 2961 3.071312 TCAACCATTTGAAAGGCATTGCT 59.929 39.130 8.82 0.00 38.87 3.91
2602 2962 3.323751 ACCATTTGAAAGGCATTGCTC 57.676 42.857 8.82 0.00 0.00 4.26
2603 2963 2.027837 ACCATTTGAAAGGCATTGCTCC 60.028 45.455 8.82 0.00 0.00 4.70
2604 2964 2.624636 CATTTGAAAGGCATTGCTCCC 58.375 47.619 8.82 0.00 0.00 4.30
2605 2965 2.014010 TTTGAAAGGCATTGCTCCCT 57.986 45.000 8.82 0.00 0.00 4.20
2606 2966 1.549203 TTGAAAGGCATTGCTCCCTC 58.451 50.000 8.82 1.67 0.00 4.30
2607 2967 0.323725 TGAAAGGCATTGCTCCCTCC 60.324 55.000 8.82 0.00 0.00 4.30
2608 2968 1.379044 AAAGGCATTGCTCCCTCCG 60.379 57.895 8.82 0.00 0.00 4.63
2609 2969 2.142292 AAAGGCATTGCTCCCTCCGT 62.142 55.000 8.82 0.00 0.00 4.69
2610 2970 2.514824 GGCATTGCTCCCTCCGTC 60.515 66.667 8.82 0.00 0.00 4.79
2611 2971 2.514824 GCATTGCTCCCTCCGTCC 60.515 66.667 0.16 0.00 0.00 4.79
2612 2972 2.202932 CATTGCTCCCTCCGTCCG 60.203 66.667 0.00 0.00 0.00 4.79
2613 2973 2.683933 ATTGCTCCCTCCGTCCGT 60.684 61.111 0.00 0.00 0.00 4.69
2614 2974 3.019003 ATTGCTCCCTCCGTCCGTG 62.019 63.158 0.00 0.00 0.00 4.94
2615 2975 4.671590 TGCTCCCTCCGTCCGTGA 62.672 66.667 0.00 0.00 0.00 4.35
2616 2976 3.379445 GCTCCCTCCGTCCGTGAA 61.379 66.667 0.00 0.00 0.00 3.18
2617 2977 2.722201 GCTCCCTCCGTCCGTGAAT 61.722 63.158 0.00 0.00 0.00 2.57
2618 2978 1.389609 GCTCCCTCCGTCCGTGAATA 61.390 60.000 0.00 0.00 0.00 1.75
2619 2979 1.108776 CTCCCTCCGTCCGTGAATAA 58.891 55.000 0.00 0.00 0.00 1.40
2620 2980 1.067212 CTCCCTCCGTCCGTGAATAAG 59.933 57.143 0.00 0.00 0.00 1.73
2621 2981 0.822164 CCCTCCGTCCGTGAATAAGT 59.178 55.000 0.00 0.00 0.00 2.24
2622 2982 1.470979 CCCTCCGTCCGTGAATAAGTG 60.471 57.143 0.00 0.00 0.00 3.16
2623 2983 1.203994 CCTCCGTCCGTGAATAAGTGT 59.796 52.381 0.00 0.00 0.00 3.55
2624 2984 2.424601 CCTCCGTCCGTGAATAAGTGTA 59.575 50.000 0.00 0.00 0.00 2.90
2625 2985 3.432782 CTCCGTCCGTGAATAAGTGTAC 58.567 50.000 0.00 0.00 0.00 2.90
2626 2986 2.819019 TCCGTCCGTGAATAAGTGTACA 59.181 45.455 0.00 0.00 0.00 2.90
2627 2987 3.444742 TCCGTCCGTGAATAAGTGTACAT 59.555 43.478 0.00 0.00 0.00 2.29
2628 2988 3.795101 CCGTCCGTGAATAAGTGTACATC 59.205 47.826 0.00 0.00 0.00 3.06
2629 2989 4.439700 CCGTCCGTGAATAAGTGTACATCT 60.440 45.833 0.00 0.00 0.00 2.90
2630 2990 5.220912 CCGTCCGTGAATAAGTGTACATCTA 60.221 44.000 0.00 0.00 0.00 1.98
2631 2991 5.907945 CGTCCGTGAATAAGTGTACATCTAG 59.092 44.000 0.00 0.00 0.00 2.43
2632 2992 5.686397 GTCCGTGAATAAGTGTACATCTAGC 59.314 44.000 0.00 0.00 0.00 3.42
2633 2993 5.593095 TCCGTGAATAAGTGTACATCTAGCT 59.407 40.000 0.00 0.00 0.00 3.32
2634 2994 6.096423 TCCGTGAATAAGTGTACATCTAGCTT 59.904 38.462 0.00 0.00 0.00 3.74
2635 2995 6.757010 CCGTGAATAAGTGTACATCTAGCTTT 59.243 38.462 0.00 0.00 0.00 3.51
2636 2996 7.277981 CCGTGAATAAGTGTACATCTAGCTTTT 59.722 37.037 0.00 0.00 0.00 2.27
2637 2997 8.110612 CGTGAATAAGTGTACATCTAGCTTTTG 58.889 37.037 0.00 0.00 0.00 2.44
2638 2998 8.936864 GTGAATAAGTGTACATCTAGCTTTTGT 58.063 33.333 0.00 0.00 0.00 2.83
2639 2999 9.151471 TGAATAAGTGTACATCTAGCTTTTGTC 57.849 33.333 0.00 0.00 0.00 3.18
2640 3000 8.494016 AATAAGTGTACATCTAGCTTTTGTCC 57.506 34.615 0.00 0.00 0.00 4.02
2641 3001 5.746990 AGTGTACATCTAGCTTTTGTCCT 57.253 39.130 0.00 0.00 0.00 3.85
2642 3002 6.852420 AGTGTACATCTAGCTTTTGTCCTA 57.148 37.500 0.00 0.00 0.00 2.94
2643 3003 7.241042 AGTGTACATCTAGCTTTTGTCCTAA 57.759 36.000 0.00 0.00 0.00 2.69
2644 3004 7.324178 AGTGTACATCTAGCTTTTGTCCTAAG 58.676 38.462 0.00 0.00 0.00 2.18
2645 3005 7.038941 AGTGTACATCTAGCTTTTGTCCTAAGT 60.039 37.037 0.00 0.00 0.00 2.24
2646 3006 7.275999 GTGTACATCTAGCTTTTGTCCTAAGTC 59.724 40.741 0.00 0.00 0.00 3.01
2647 3007 6.360370 ACATCTAGCTTTTGTCCTAAGTCA 57.640 37.500 0.00 0.00 0.00 3.41
2648 3008 6.769512 ACATCTAGCTTTTGTCCTAAGTCAA 58.230 36.000 0.00 0.00 0.00 3.18
2649 3009 7.224297 ACATCTAGCTTTTGTCCTAAGTCAAA 58.776 34.615 0.00 0.00 30.64 2.69
2650 3010 7.389053 ACATCTAGCTTTTGTCCTAAGTCAAAG 59.611 37.037 0.00 0.00 33.54 2.77
2651 3011 6.827727 TCTAGCTTTTGTCCTAAGTCAAAGT 58.172 36.000 0.00 0.00 33.54 2.66
2652 3012 7.280356 TCTAGCTTTTGTCCTAAGTCAAAGTT 58.720 34.615 0.00 0.00 33.54 2.66
2653 3013 6.775594 AGCTTTTGTCCTAAGTCAAAGTTT 57.224 33.333 0.00 0.00 33.54 2.66
2654 3014 7.170393 AGCTTTTGTCCTAAGTCAAAGTTTT 57.830 32.000 0.00 0.00 33.54 2.43
2655 3015 8.288689 AGCTTTTGTCCTAAGTCAAAGTTTTA 57.711 30.769 0.00 0.00 33.54 1.52
2656 3016 8.745590 AGCTTTTGTCCTAAGTCAAAGTTTTAA 58.254 29.630 0.00 0.00 33.54 1.52
2657 3017 9.361315 GCTTTTGTCCTAAGTCAAAGTTTTAAA 57.639 29.630 0.00 0.00 33.54 1.52
2684 3044 9.996554 ACTTTGACCAATTTTATAGGGAAAAAG 57.003 29.630 0.00 0.00 35.01 2.27
2685 3045 9.996554 CTTTGACCAATTTTATAGGGAAAAAGT 57.003 29.630 0.00 0.00 32.29 2.66
2688 3048 9.816787 TGACCAATTTTATAGGGAAAAAGTAGT 57.183 29.630 0.00 0.00 32.29 2.73
2739 3099 9.453572 TCACTAGATTCATTTTGAAATGTAGCT 57.546 29.630 14.96 14.96 44.66 3.32
2794 3154 9.431887 TGCTACTACACTTTTCTATAAAGTTGG 57.568 33.333 0.42 0.00 38.32 3.77
2795 3155 9.433153 GCTACTACACTTTTCTATAAAGTTGGT 57.567 33.333 0.42 0.74 38.32 3.67
2798 3158 9.841295 ACTACACTTTTCTATAAAGTTGGTCAA 57.159 29.630 0.42 0.00 38.32 3.18
2846 3206 8.186178 ACAAAAGCTAGATGTACACTTATTCG 57.814 34.615 0.00 0.00 0.00 3.34
2847 3207 6.830114 AAAGCTAGATGTACACTTATTCGC 57.170 37.500 0.00 0.00 0.00 4.70
2848 3208 5.515797 AGCTAGATGTACACTTATTCGCA 57.484 39.130 0.00 0.00 0.00 5.10
2849 3209 5.524284 AGCTAGATGTACACTTATTCGCAG 58.476 41.667 0.00 0.00 0.00 5.18
2850 3210 5.299531 AGCTAGATGTACACTTATTCGCAGA 59.700 40.000 0.00 0.00 0.00 4.26
2851 3211 5.399892 GCTAGATGTACACTTATTCGCAGAC 59.600 44.000 0.00 0.00 34.32 3.51
2852 3212 4.352039 AGATGTACACTTATTCGCAGACG 58.648 43.478 0.00 0.00 42.01 4.18
2853 3213 2.871133 TGTACACTTATTCGCAGACGG 58.129 47.619 0.00 0.00 40.63 4.79
2854 3214 2.488937 TGTACACTTATTCGCAGACGGA 59.511 45.455 0.00 0.00 40.63 4.69
2855 3215 2.279582 ACACTTATTCGCAGACGGAG 57.720 50.000 0.00 0.00 40.63 4.63
2856 3216 1.135083 ACACTTATTCGCAGACGGAGG 60.135 52.381 0.00 0.00 40.63 4.30
2857 3217 0.460311 ACTTATTCGCAGACGGAGGG 59.540 55.000 0.00 0.00 40.63 4.30
2858 3218 0.744874 CTTATTCGCAGACGGAGGGA 59.255 55.000 0.00 0.00 40.63 4.20
2859 3219 1.136305 CTTATTCGCAGACGGAGGGAA 59.864 52.381 6.11 6.11 41.28 3.97
2860 3220 1.410004 TATTCGCAGACGGAGGGAAT 58.590 50.000 16.23 16.23 46.29 3.01
3269 3678 4.946772 GGGACGGAGGGAGTATATTAGTAC 59.053 50.000 0.00 0.00 0.00 2.73
3629 4052 6.345882 GCTGCTATTCAGTACGTATTACTTGC 60.346 42.308 0.00 0.00 44.66 4.01
3640 4064 5.938322 ACGTATTACTTGCAACCTTCATTG 58.062 37.500 0.00 0.00 0.00 2.82
3653 4079 6.215121 CAACCTTCATTGTTTGCTTGTCATA 58.785 36.000 0.00 0.00 0.00 2.15
3656 4082 5.630680 CCTTCATTGTTTGCTTGTCATACAC 59.369 40.000 0.00 0.00 36.58 2.90
3660 4086 5.512753 TTGTTTGCTTGTCATACACACAT 57.487 34.783 0.00 0.00 36.58 3.21
3679 4105 5.185635 ACACATAATCACCATTTGTTGAGGG 59.814 40.000 0.00 0.00 0.00 4.30
3776 4208 0.108186 TTGCTGTCATCGGTAGCCTG 60.108 55.000 0.00 0.00 36.64 4.85
3839 4271 4.445385 GTCAGGTATTTGTTTTTGCTGCAG 59.555 41.667 10.11 10.11 0.00 4.41
3842 4274 5.049828 AGGTATTTGTTTTTGCTGCAGAAC 58.950 37.500 20.43 13.41 0.00 3.01
3874 4309 5.055144 CCTGTTCCACTGATCTGATGTATG 58.945 45.833 6.60 0.00 0.00 2.39
3900 4335 5.796350 ACATGCTAACCGAATGTAACTTC 57.204 39.130 0.00 0.00 40.23 3.01
3905 4340 5.116882 GCTAACCGAATGTAACTTCTCCAT 58.883 41.667 0.00 0.00 0.00 3.41
3957 4392 1.265568 CGCTGCATTTCATTCAGTGC 58.734 50.000 0.00 0.00 38.05 4.40
3960 4395 2.247637 CTGCATTTCATTCAGTGCGTG 58.752 47.619 0.00 0.00 40.34 5.34
4010 4445 4.082665 AGGTATGCTCCTGATCATTGTG 57.917 45.455 0.00 0.00 36.35 3.33
4018 4453 4.588899 CTCCTGATCATTGTGGTACCAAA 58.411 43.478 18.31 8.93 0.00 3.28
4024 4459 5.772169 TGATCATTGTGGTACCAAATGTTCA 59.228 36.000 30.49 30.49 0.00 3.18
4048 4483 5.474578 TGCAGATACTCCCATGATAACTC 57.525 43.478 0.00 0.00 0.00 3.01
4212 4647 0.179029 CTGTGAAGTCCAACCCGGTT 60.179 55.000 0.00 0.00 35.57 4.44
4229 4664 2.162208 CGGTTAGCTGTGATTGCAATGT 59.838 45.455 18.59 0.00 0.00 2.71
4238 4673 3.384146 TGTGATTGCAATGTTTGAGTGGT 59.616 39.130 18.59 0.00 0.00 4.16
4241 4676 2.772568 TGCAATGTTTGAGTGGTTCG 57.227 45.000 0.00 0.00 0.00 3.95
4249 4684 4.710528 GTTTGAGTGGTTCGAACAGTAG 57.289 45.455 28.24 0.00 45.73 2.57
4250 4685 4.365723 GTTTGAGTGGTTCGAACAGTAGA 58.634 43.478 28.24 7.47 45.73 2.59
4251 4686 4.659111 TTGAGTGGTTCGAACAGTAGAA 57.341 40.909 28.24 12.78 0.00 2.10
4252 4687 3.973657 TGAGTGGTTCGAACAGTAGAAC 58.026 45.455 28.24 15.46 44.22 3.01
4253 4688 3.635373 TGAGTGGTTCGAACAGTAGAACT 59.365 43.478 28.24 19.22 44.33 3.01
4258 4693 6.488006 AGTGGTTCGAACAGTAGAACTAACTA 59.512 38.462 28.24 0.00 44.33 2.24
4262 4697 7.217825 GGTTCGAACAGTAGAACTAACTATTCG 59.782 40.741 28.24 9.65 44.33 3.34
4263 4698 7.369803 TCGAACAGTAGAACTAACTATTCGT 57.630 36.000 14.09 0.00 35.63 3.85
4267 4702 6.091437 ACAGTAGAACTAACTATTCGTGTGC 58.909 40.000 0.00 0.00 0.00 4.57
4274 4709 8.182881 AGAACTAACTATTCGTGTGCTAACTAG 58.817 37.037 0.00 0.00 0.00 2.57
4302 4740 0.677731 TTCCTTCATTCCTGCAGGCG 60.678 55.000 28.91 18.12 35.92 5.52
4329 4767 0.921347 CTAGCGGAACAAACGGATCG 59.079 55.000 0.00 0.00 0.00 3.69
4335 4773 1.356938 GAACAAACGGATCGGAGACC 58.643 55.000 7.35 0.00 42.51 3.85
4374 4812 1.011968 TGAATGTCTTCCGCGAACCG 61.012 55.000 8.23 0.00 0.00 4.44
4398 4836 1.372582 ACATGTAAGCTGTGCATCCG 58.627 50.000 0.00 0.00 28.71 4.18
4424 4862 1.539157 CTTCCTTCCCTTGCCTTGTC 58.461 55.000 0.00 0.00 0.00 3.18
4425 4863 0.112412 TTCCTTCCCTTGCCTTGTCC 59.888 55.000 0.00 0.00 0.00 4.02
4426 4864 0.772124 TCCTTCCCTTGCCTTGTCCT 60.772 55.000 0.00 0.00 0.00 3.85
4429 4867 2.422093 CCTTCCCTTGCCTTGTCCTATC 60.422 54.545 0.00 0.00 0.00 2.08
4430 4868 1.965414 TCCCTTGCCTTGTCCTATCA 58.035 50.000 0.00 0.00 0.00 2.15
4431 4869 2.274542 TCCCTTGCCTTGTCCTATCAA 58.725 47.619 0.00 0.00 0.00 2.57
4432 4870 2.026262 TCCCTTGCCTTGTCCTATCAAC 60.026 50.000 0.00 0.00 0.00 3.18
4433 4871 2.025887 CCCTTGCCTTGTCCTATCAACT 60.026 50.000 0.00 0.00 0.00 3.16
4434 4872 3.012518 CCTTGCCTTGTCCTATCAACTG 58.987 50.000 0.00 0.00 0.00 3.16
4435 4873 3.307691 CCTTGCCTTGTCCTATCAACTGA 60.308 47.826 0.00 0.00 0.00 3.41
4436 4874 3.334583 TGCCTTGTCCTATCAACTGAC 57.665 47.619 0.00 0.00 0.00 3.51
4437 4875 2.906389 TGCCTTGTCCTATCAACTGACT 59.094 45.455 0.00 0.00 0.00 3.41
4441 4879 5.938125 GCCTTGTCCTATCAACTGACTTTTA 59.062 40.000 0.00 0.00 0.00 1.52
4448 4886 7.334421 GTCCTATCAACTGACTTTTATGCTTGA 59.666 37.037 0.00 0.00 0.00 3.02
4452 4890 7.977789 TCAACTGACTTTTATGCTTGACATA 57.022 32.000 0.00 0.00 40.38 2.29
4455 4893 9.926751 CAACTGACTTTTATGCTTGACATATAG 57.073 33.333 0.00 0.00 40.93 1.31
4460 4898 7.006509 ACTTTTATGCTTGACATATAGGCCAT 58.993 34.615 5.01 0.00 40.93 4.40
4461 4899 6.822667 TTTATGCTTGACATATAGGCCATG 57.177 37.500 5.01 2.06 40.93 3.66
4465 4903 5.199723 TGCTTGACATATAGGCCATGAAAA 58.800 37.500 5.01 0.00 0.00 2.29
4470 4908 5.104151 TGACATATAGGCCATGAAAACCTGA 60.104 40.000 5.01 0.00 34.92 3.86
4473 4911 4.803329 ATAGGCCATGAAAACCTGATCT 57.197 40.909 5.01 0.00 34.92 2.75
4477 4915 6.266131 AGGCCATGAAAACCTGATCTATTA 57.734 37.500 5.01 0.00 30.82 0.98
4480 4918 5.241728 GCCATGAAAACCTGATCTATTACCC 59.758 44.000 0.00 0.00 0.00 3.69
4481 4919 6.364701 CCATGAAAACCTGATCTATTACCCA 58.635 40.000 0.00 0.00 0.00 4.51
4484 4922 6.288294 TGAAAACCTGATCTATTACCCATCG 58.712 40.000 0.00 0.00 0.00 3.84
4487 4925 6.591750 AACCTGATCTATTACCCATCGTAG 57.408 41.667 0.00 0.00 0.00 3.51
4492 4930 5.944599 TGATCTATTACCCATCGTAGACTCC 59.055 44.000 0.00 0.00 42.51 3.85
4506 4944 3.460857 AGACTCCGCATATTGTTCCTC 57.539 47.619 0.00 0.00 0.00 3.71
4517 4955 7.255242 CCGCATATTGTTCCTCTTTTACATCAT 60.255 37.037 0.00 0.00 0.00 2.45
4518 4956 7.800380 CGCATATTGTTCCTCTTTTACATCATC 59.200 37.037 0.00 0.00 0.00 2.92
4519 4957 8.623903 GCATATTGTTCCTCTTTTACATCATCA 58.376 33.333 0.00 0.00 0.00 3.07
4651 5090 5.538433 AGATCAAGTAAGCCCATCTCTCTAC 59.462 44.000 0.00 0.00 0.00 2.59
4664 5103 4.659529 TCTCTCTACCTCTCTTGAACCA 57.340 45.455 0.00 0.00 0.00 3.67
4700 5139 6.491062 TGATGTATTGCTGCTGGCTAATAAAT 59.509 34.615 0.00 0.00 42.39 1.40
4702 5141 6.064060 TGTATTGCTGCTGGCTAATAAATCT 58.936 36.000 0.00 0.00 42.39 2.40
4799 5283 2.124903 CACTACAAGTCAGCGTTCGTT 58.875 47.619 0.00 0.00 0.00 3.85
4824 5308 2.092882 GTCTGTAACCGAGTGCCGC 61.093 63.158 0.00 0.00 36.84 6.53
4826 5310 3.583276 CTGTAACCGAGTGCCGCCA 62.583 63.158 0.00 0.00 36.84 5.69
4827 5311 3.116531 GTAACCGAGTGCCGCCAC 61.117 66.667 0.00 0.00 42.39 5.01
4835 5319 3.562635 GTGCCGCCACTACAAGTC 58.437 61.111 0.00 0.00 38.93 3.01
4836 5320 1.301401 GTGCCGCCACTACAAGTCA 60.301 57.895 0.00 0.00 38.93 3.41
4837 5321 1.005037 TGCCGCCACTACAAGTCAG 60.005 57.895 0.00 0.00 0.00 3.51
4838 5322 2.391389 GCCGCCACTACAAGTCAGC 61.391 63.158 0.00 0.00 0.00 4.26
4839 5323 2.094659 CCGCCACTACAAGTCAGCG 61.095 63.158 11.94 11.94 43.62 5.18
4840 5324 1.372997 CGCCACTACAAGTCAGCGT 60.373 57.895 11.07 0.00 40.87 5.07
4841 5325 0.944311 CGCCACTACAAGTCAGCGTT 60.944 55.000 11.07 0.00 40.87 4.84
4842 5326 0.790814 GCCACTACAAGTCAGCGTTC 59.209 55.000 0.00 0.00 0.00 3.95
4843 5327 1.060713 CCACTACAAGTCAGCGTTCG 58.939 55.000 0.00 0.00 0.00 3.95
4844 5328 1.602165 CCACTACAAGTCAGCGTTCGT 60.602 52.381 0.00 0.00 0.00 3.85
4845 5329 1.714460 CACTACAAGTCAGCGTTCGTC 59.286 52.381 0.00 0.00 0.00 4.20
4846 5330 0.975544 CTACAAGTCAGCGTTCGTCG 59.024 55.000 0.00 0.00 43.12 5.12
4847 5331 0.587768 TACAAGTCAGCGTTCGTCGA 59.412 50.000 6.91 0.00 42.86 4.20
4848 5332 0.933509 ACAAGTCAGCGTTCGTCGAC 60.934 55.000 5.18 5.18 42.86 4.20
4849 5333 0.660595 CAAGTCAGCGTTCGTCGACT 60.661 55.000 14.70 10.91 42.86 4.18
4850 5334 0.660595 AAGTCAGCGTTCGTCGACTG 60.661 55.000 14.70 7.51 42.86 3.51
4851 5335 1.370172 GTCAGCGTTCGTCGACTGT 60.370 57.895 14.70 0.00 41.08 3.55
4852 5336 1.370051 TCAGCGTTCGTCGACTGTG 60.370 57.895 14.70 0.00 41.08 3.66
4853 5337 1.657487 CAGCGTTCGTCGACTGTGT 60.657 57.895 14.70 0.00 42.86 3.72
4854 5338 1.370172 AGCGTTCGTCGACTGTGTC 60.370 57.895 14.70 0.02 42.86 3.67
4855 5339 1.370172 GCGTTCGTCGACTGTGTCT 60.370 57.895 14.70 0.00 42.86 3.41
4856 5340 1.597700 GCGTTCGTCGACTGTGTCTG 61.598 60.000 14.70 0.00 42.86 3.51
4857 5341 0.316772 CGTTCGTCGACTGTGTCTGT 60.317 55.000 14.70 0.00 42.86 3.41
4858 5342 1.070376 CGTTCGTCGACTGTGTCTGTA 60.070 52.381 14.70 0.00 42.86 2.74
4859 5343 2.600556 CGTTCGTCGACTGTGTCTGTAA 60.601 50.000 14.70 0.00 42.86 2.41
4860 5344 2.675767 TCGTCGACTGTGTCTGTAAC 57.324 50.000 14.70 0.00 0.00 2.50
4861 5345 1.265095 TCGTCGACTGTGTCTGTAACC 59.735 52.381 14.70 0.00 0.00 2.85
4862 5346 1.682982 GTCGACTGTGTCTGTAACCG 58.317 55.000 8.70 0.00 0.00 4.44
4863 5347 1.265095 GTCGACTGTGTCTGTAACCGA 59.735 52.381 8.70 0.00 0.00 4.69
4864 5348 1.534163 TCGACTGTGTCTGTAACCGAG 59.466 52.381 0.00 0.00 0.00 4.63
4865 5349 1.266175 CGACTGTGTCTGTAACCGAGT 59.734 52.381 0.00 0.00 0.00 4.18
4866 5350 2.662700 GACTGTGTCTGTAACCGAGTG 58.337 52.381 0.00 0.00 0.00 3.51
4867 5351 1.269621 ACTGTGTCTGTAACCGAGTGC 60.270 52.381 0.00 0.00 0.00 4.40
4868 5352 0.032952 TGTGTCTGTAACCGAGTGCC 59.967 55.000 0.00 0.00 0.00 5.01
4869 5353 1.007336 GTGTCTGTAACCGAGTGCCG 61.007 60.000 0.00 0.00 38.18 5.69
4897 5381 1.338337 TCGCTAGCATCTGTCCTTAGC 59.662 52.381 16.45 0.00 0.00 3.09
4898 5382 1.339610 CGCTAGCATCTGTCCTTAGCT 59.660 52.381 16.45 0.00 39.22 3.32
4899 5383 2.753296 GCTAGCATCTGTCCTTAGCTG 58.247 52.381 10.63 0.00 36.80 4.24
4921 5405 1.562475 GTGCTGTTTAGGTATCCCCCA 59.438 52.381 0.00 0.00 0.00 4.96
4924 5408 2.104963 GCTGTTTAGGTATCCCCCAGAG 59.895 54.545 0.00 0.00 0.00 3.35
4938 5422 2.328819 CCAGAGGGAAGCATCTTCTG 57.671 55.000 13.46 13.46 37.18 3.02
4966 5451 3.007398 AGTTTGAGAGACATGACTCACCC 59.993 47.826 23.85 14.04 41.82 4.61
4972 5457 0.326264 GACATGACTCACCCTTGGCT 59.674 55.000 0.00 0.00 0.00 4.75
5012 5504 7.069331 CAGGGGCATGTATTACTTTAAATTCCA 59.931 37.037 0.00 0.00 0.00 3.53
5112 5620 5.674052 TGGTGGGATGGATTTACATTTTG 57.326 39.130 0.00 0.00 0.00 2.44
5220 5749 2.082354 GCTCGCCACTAGTTTGAGC 58.918 57.895 19.31 19.31 44.37 4.26
5223 5754 2.778679 GCCACTAGTTTGAGCGCG 59.221 61.111 0.00 0.00 0.00 6.86
5228 5759 0.319555 ACTAGTTTGAGCGCGCAAGA 60.320 50.000 35.10 15.34 43.02 3.02
5246 5777 5.807520 CGCAAGAGATTATTACACTGTCTGT 59.192 40.000 0.00 0.00 43.02 3.41
5270 5801 7.686438 TGTAAACATCATTGCTTACACTGAT 57.314 32.000 0.00 0.00 44.47 2.90
5324 5874 3.558931 TTCCTCTGAAGTGCACAAAGA 57.441 42.857 21.04 16.46 0.00 2.52
5354 5943 4.100808 ACTGACCTATCTCTTCAAGGCATC 59.899 45.833 0.00 0.00 33.42 3.91
5402 6180 4.034394 TGTTGAGACGAGCATTTCATATGC 59.966 41.667 0.00 1.61 44.85 3.14
5627 7299 9.810545 AATAATTTCTGTTTTTGAAACGAGGAA 57.189 25.926 0.00 2.23 36.43 3.36
5651 7323 2.034066 ATGTTGCAGGTGGGGACG 59.966 61.111 0.00 0.00 0.00 4.79
5788 7474 6.693761 TTTCTCGATGAAATTTTGCACATG 57.306 33.333 6.10 0.00 39.50 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.024271 TTTTCAGGCAGGCGATATGC 58.976 50.000 0.00 0.00 43.09 3.14
46 49 1.512926 GTGCAAACGACCTGAGTGAT 58.487 50.000 0.00 0.00 0.00 3.06
73 77 9.994432 TTGCAAATAATTGTTTTGATCGTTTTT 57.006 22.222 15.80 0.00 38.85 1.94
93 97 9.243637 GTAGTCTTGAATTGTTTATGTTGCAAA 57.756 29.630 0.00 0.00 0.00 3.68
96 100 9.760660 CTAGTAGTCTTGAATTGTTTATGTTGC 57.239 33.333 0.00 0.00 0.00 4.17
174 178 9.155975 TCTAAGAAGACATTTGCTATTGTTCTC 57.844 33.333 0.00 0.00 0.00 2.87
182 186 6.823689 GGAACCATCTAAGAAGACATTTGCTA 59.176 38.462 0.00 0.00 33.57 3.49
184 188 5.649831 AGGAACCATCTAAGAAGACATTTGC 59.350 40.000 0.00 0.00 33.57 3.68
185 189 6.881065 TGAGGAACCATCTAAGAAGACATTTG 59.119 38.462 0.00 0.00 33.57 2.32
202 206 4.051237 GTGATTTTGTGCTTTGAGGAACC 58.949 43.478 0.00 0.00 0.00 3.62
224 228 8.671384 TGGTACGAAATAGAAAATATCTTGGG 57.329 34.615 0.00 0.00 39.71 4.12
229 233 8.936864 CCATCCTGGTACGAAATAGAAAATATC 58.063 37.037 0.00 0.00 31.35 1.63
230 234 8.656806 TCCATCCTGGTACGAAATAGAAAATAT 58.343 33.333 0.00 0.00 39.03 1.28
231 235 8.025270 TCCATCCTGGTACGAAATAGAAAATA 57.975 34.615 0.00 0.00 39.03 1.40
243 254 2.747446 CCAAAAACTCCATCCTGGTACG 59.253 50.000 0.00 0.00 39.03 3.67
247 258 1.631405 TGCCAAAAACTCCATCCTGG 58.369 50.000 0.00 0.00 39.43 4.45
250 261 6.547510 AGAATAGTATGCCAAAAACTCCATCC 59.452 38.462 0.00 0.00 0.00 3.51
252 263 9.071276 CATAGAATAGTATGCCAAAAACTCCAT 57.929 33.333 0.00 0.00 0.00 3.41
263 274 5.065218 CGGCCATTTCATAGAATAGTATGCC 59.935 44.000 2.24 0.00 31.42 4.40
264 275 5.447818 GCGGCCATTTCATAGAATAGTATGC 60.448 44.000 2.24 0.00 31.42 3.14
265 276 5.877012 AGCGGCCATTTCATAGAATAGTATG 59.123 40.000 2.24 0.00 0.00 2.39
266 277 6.054860 AGCGGCCATTTCATAGAATAGTAT 57.945 37.500 2.24 0.00 0.00 2.12
267 278 5.483685 AGCGGCCATTTCATAGAATAGTA 57.516 39.130 2.24 0.00 0.00 1.82
268 279 4.357918 AGCGGCCATTTCATAGAATAGT 57.642 40.909 2.24 0.00 0.00 2.12
269 280 5.695851 AAAGCGGCCATTTCATAGAATAG 57.304 39.130 2.24 0.00 0.00 1.73
270 281 6.096141 TGAAAAAGCGGCCATTTCATAGAATA 59.904 34.615 20.32 3.51 37.95 1.75
271 282 5.105392 TGAAAAAGCGGCCATTTCATAGAAT 60.105 36.000 20.32 0.00 37.95 2.40
273 284 3.761218 TGAAAAAGCGGCCATTTCATAGA 59.239 39.130 20.32 4.88 37.95 1.98
274 285 4.108699 TGAAAAAGCGGCCATTTCATAG 57.891 40.909 20.32 0.00 37.95 2.23
276 287 3.066380 GTTGAAAAAGCGGCCATTTCAT 58.934 40.909 23.07 6.24 41.26 2.57
278 289 2.478831 TGTTGAAAAAGCGGCCATTTC 58.521 42.857 16.69 16.69 34.45 2.17
279 290 2.611225 TGTTGAAAAAGCGGCCATTT 57.389 40.000 2.24 0.00 0.00 2.32
281 292 3.006323 TGTTATGTTGAAAAAGCGGCCAT 59.994 39.130 2.24 0.00 0.00 4.40
282 293 2.362397 TGTTATGTTGAAAAAGCGGCCA 59.638 40.909 2.24 0.00 0.00 5.36
283 294 3.019933 TGTTATGTTGAAAAAGCGGCC 57.980 42.857 0.00 0.00 0.00 6.13
284 295 6.090129 TCTTATGTTATGTTGAAAAAGCGGC 58.910 36.000 0.00 0.00 0.00 6.53
285 296 8.514136 TTTCTTATGTTATGTTGAAAAAGCGG 57.486 30.769 0.00 0.00 0.00 5.52
311 329 9.450807 CGAAGACTTTCAAGTTACAAAAATGAT 57.549 29.630 0.00 0.00 39.88 2.45
312 330 8.455682 ACGAAGACTTTCAAGTTACAAAAATGA 58.544 29.630 0.00 0.00 39.88 2.57
313 331 8.614994 ACGAAGACTTTCAAGTTACAAAAATG 57.385 30.769 0.00 0.00 39.88 2.32
320 338 4.047142 ACCGACGAAGACTTTCAAGTTAC 58.953 43.478 0.00 0.00 39.88 2.50
337 355 4.743644 CCTTCTATATTGGAAACGACCGAC 59.256 45.833 0.00 0.00 0.00 4.79
339 357 3.493503 GCCTTCTATATTGGAAACGACCG 59.506 47.826 0.00 0.00 0.00 4.79
377 395 8.821147 TGGTCAAATGAAAGAAAATGATCTTG 57.179 30.769 0.00 0.00 39.54 3.02
379 397 8.645110 ACTTGGTCAAATGAAAGAAAATGATCT 58.355 29.630 0.00 0.00 0.00 2.75
433 453 4.732784 AGCACTATATTGTTTGTTTGGCG 58.267 39.130 0.00 0.00 0.00 5.69
434 454 6.632834 CGATAGCACTATATTGTTTGTTTGGC 59.367 38.462 0.00 0.00 0.00 4.52
454 474 3.004171 AGCTCTCATACCGTAGCGATAG 58.996 50.000 0.00 0.00 39.94 2.08
457 477 1.676746 AAGCTCTCATACCGTAGCGA 58.323 50.000 0.00 0.00 39.94 4.93
458 478 2.120232 CAAAGCTCTCATACCGTAGCG 58.880 52.381 0.00 0.00 39.94 4.26
522 542 1.165270 AAGCGATATATTTGGGGCGC 58.835 50.000 0.00 0.00 44.22 6.53
566 586 4.119442 TGTAAAGCGTGTAAGGATCTCC 57.881 45.455 0.00 0.00 0.00 3.71
577 597 4.497473 TCCTTTCCAAATGTAAAGCGTG 57.503 40.909 0.00 0.00 32.48 5.34
672 695 0.179018 AGCAGCCGGTGAGACTTTTT 60.179 50.000 1.90 0.00 0.00 1.94
673 696 0.886490 CAGCAGCCGGTGAGACTTTT 60.886 55.000 1.90 0.00 43.56 2.27
674 697 1.302033 CAGCAGCCGGTGAGACTTT 60.302 57.895 1.90 0.00 43.56 2.66
675 698 2.345244 CAGCAGCCGGTGAGACTT 59.655 61.111 1.90 0.00 43.56 3.01
676 699 3.699894 CCAGCAGCCGGTGAGACT 61.700 66.667 1.90 0.00 43.56 3.24
731 758 3.127533 GTCCCTGCCGCACATGAC 61.128 66.667 0.00 0.00 0.00 3.06
766 793 1.640428 GGCTTTAATTTGGCCTTCGC 58.360 50.000 3.32 0.00 42.31 4.70
793 820 2.815647 CTTCCCGCCAGTTCTCGC 60.816 66.667 0.00 0.00 0.00 5.03
820 847 2.180769 GGGAAATGCGCGGGAAAC 59.819 61.111 8.83 0.00 0.00 2.78
946 991 4.567385 CCGCTCTGCTCTCGGCTC 62.567 72.222 0.00 0.00 42.39 4.70
984 1029 3.345028 ATGGCTGCTGCTCCCCTT 61.345 61.111 15.64 0.00 39.59 3.95
987 1032 2.194212 CATCATGGCTGCTGCTCCC 61.194 63.158 15.64 1.51 39.59 4.30
991 1036 0.381089 GAGAACATCATGGCTGCTGC 59.619 55.000 7.10 7.10 38.76 5.25
1095 1152 1.746991 GAAAGCGGGCAAGGAGGAG 60.747 63.158 0.00 0.00 0.00 3.69
1096 1153 1.779061 AAGAAAGCGGGCAAGGAGGA 61.779 55.000 0.00 0.00 0.00 3.71
1124 1181 2.920912 AGGAAACCGGCGAGGACA 60.921 61.111 9.30 0.00 45.00 4.02
1125 1182 2.240162 ATCAGGAAACCGGCGAGGAC 62.240 60.000 9.30 0.00 45.00 3.85
1130 1187 0.174845 TCTACATCAGGAAACCGGCG 59.825 55.000 0.00 0.00 0.00 6.46
1184 1241 3.700970 TCAGCGGCATCGTTCCCA 61.701 61.111 1.45 0.00 38.89 4.37
1188 1245 4.373116 ACGGTCAGCGGCATCGTT 62.373 61.111 0.00 0.00 38.89 3.85
1296 1353 3.585990 CGCATGGCCGGTGAATCC 61.586 66.667 11.80 0.00 0.00 3.01
1340 1411 0.250553 CCCGAACAACAGCAGGGTAA 60.251 55.000 0.00 0.00 37.36 2.85
1356 1427 4.506255 GCAGATCCCCCAACCCCG 62.506 72.222 0.00 0.00 0.00 5.73
1357 1428 3.346734 TGCAGATCCCCCAACCCC 61.347 66.667 0.00 0.00 0.00 4.95
1524 1600 4.453136 CCAGCAATGGAATCCAAACAAAAG 59.547 41.667 5.89 0.00 36.95 2.27
1552 1651 1.607178 CAAATCCCACAGCCAGCCA 60.607 57.895 0.00 0.00 0.00 4.75
1553 1652 1.598701 GACAAATCCCACAGCCAGCC 61.599 60.000 0.00 0.00 0.00 4.85
1554 1653 0.610232 AGACAAATCCCACAGCCAGC 60.610 55.000 0.00 0.00 0.00 4.85
1555 1654 2.787473 TAGACAAATCCCACAGCCAG 57.213 50.000 0.00 0.00 0.00 4.85
1595 1694 6.763610 ACAGCCAACAGTATTTCTATCTTAGC 59.236 38.462 0.00 0.00 0.00 3.09
1598 1697 6.375455 CCAACAGCCAACAGTATTTCTATCTT 59.625 38.462 0.00 0.00 0.00 2.40
1646 1745 4.908601 ACACATCTGGGACTCAATTACA 57.091 40.909 0.00 0.00 0.00 2.41
1667 1766 8.586744 ACAAAGGTGTAAACTTGTTTCCTAAAA 58.413 29.630 1.72 0.00 35.72 1.52
1675 1774 4.142249 GGAGCACAAAGGTGTAAACTTGTT 60.142 41.667 0.00 0.00 46.95 2.83
1722 1822 4.002906 AGGTTTGACGAATCTAACAGCA 57.997 40.909 0.00 0.00 40.91 4.41
1753 1853 0.543277 CAGCATTCCTAGTGCAGGGA 59.457 55.000 6.59 0.00 45.58 4.20
1754 1854 1.099879 GCAGCATTCCTAGTGCAGGG 61.100 60.000 6.59 0.00 45.58 4.45
1775 1875 1.135575 GCTTGCAGTGTTGTGATAGCC 60.136 52.381 0.00 0.00 0.00 3.93
1788 1888 2.032550 CCCATCGTCTAATTGCTTGCAG 59.967 50.000 0.00 0.00 0.00 4.41
1790 1890 2.288666 TCCCATCGTCTAATTGCTTGC 58.711 47.619 0.00 0.00 0.00 4.01
1797 1897 4.422073 TGCAGATTTCCCATCGTCTAAT 57.578 40.909 0.00 0.00 0.00 1.73
1801 1901 3.699067 CAATTGCAGATTTCCCATCGTC 58.301 45.455 0.00 0.00 0.00 4.20
1803 1903 2.100252 AGCAATTGCAGATTTCCCATCG 59.900 45.455 30.89 0.00 45.16 3.84
1876 1980 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
1877 1981 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
1878 1982 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
1879 1983 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
1880 1984 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
1881 1985 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
1882 1986 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
1896 2000 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
1897 2001 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
1898 2002 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
1899 2003 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
1900 2004 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
1929 2033 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
1931 2035 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
1941 2045 9.075678 GCAGTAATATACTCCCTCTGTAAACTA 57.924 37.037 0.00 0.00 36.76 2.24
1942 2046 7.563924 TGCAGTAATATACTCCCTCTGTAAACT 59.436 37.037 0.00 0.00 36.76 2.66
1943 2047 7.723324 TGCAGTAATATACTCCCTCTGTAAAC 58.277 38.462 0.00 0.00 36.76 2.01
1944 2048 7.907841 TGCAGTAATATACTCCCTCTGTAAA 57.092 36.000 0.00 0.00 36.76 2.01
1945 2049 7.907841 TTGCAGTAATATACTCCCTCTGTAA 57.092 36.000 0.00 0.00 36.76 2.41
1946 2050 7.907841 TTTGCAGTAATATACTCCCTCTGTA 57.092 36.000 0.00 0.00 36.76 2.74
1947 2051 6.808321 TTTGCAGTAATATACTCCCTCTGT 57.192 37.500 0.00 0.00 36.76 3.41
1948 2052 7.308229 GCATTTTGCAGTAATATACTCCCTCTG 60.308 40.741 0.00 0.00 44.26 3.35
1949 2053 6.712547 GCATTTTGCAGTAATATACTCCCTCT 59.287 38.462 0.00 0.00 44.26 3.69
1950 2054 6.903419 GCATTTTGCAGTAATATACTCCCTC 58.097 40.000 0.00 0.00 44.26 4.30
1951 2055 6.884280 GCATTTTGCAGTAATATACTCCCT 57.116 37.500 0.00 0.00 44.26 4.20
2096 2206 7.596749 ACAAGTACTTTGGAGAAACATATCG 57.403 36.000 5.07 0.00 41.25 2.92
2298 2646 7.538678 AGCAGCATTTCTAGTGAAAATTAAACG 59.461 33.333 0.00 0.00 44.22 3.60
2302 2650 7.554118 AGCTAGCAGCATTTCTAGTGAAAATTA 59.446 33.333 18.83 0.00 45.56 1.40
2350 2698 5.192927 CCAGCAGATTTACCATTACTGGAA 58.807 41.667 6.05 0.00 46.37 3.53
2416 2767 5.972327 TTCACGGTAATTTATCCCCCTAA 57.028 39.130 0.00 0.00 0.00 2.69
2505 2864 2.163390 CACTGCGATGAGAGGCACG 61.163 63.158 0.00 0.00 34.97 5.34
2518 2877 3.922240 CACTATTGGATTGTTTGCACTGC 59.078 43.478 0.00 0.00 0.00 4.40
2532 2891 3.565764 TTGCAGATCCCTCACTATTGG 57.434 47.619 0.00 0.00 0.00 3.16
2541 2900 5.450818 TGGTAAAGTAATTGCAGATCCCT 57.549 39.130 0.00 0.00 0.00 4.20
2599 2959 1.389609 TATTCACGGACGGAGGGAGC 61.390 60.000 0.00 0.00 0.00 4.70
2600 2960 1.067212 CTTATTCACGGACGGAGGGAG 59.933 57.143 0.00 0.00 0.00 4.30
2601 2961 1.108776 CTTATTCACGGACGGAGGGA 58.891 55.000 0.00 0.00 0.00 4.20
2602 2962 0.822164 ACTTATTCACGGACGGAGGG 59.178 55.000 0.00 0.00 0.00 4.30
2603 2963 1.203994 ACACTTATTCACGGACGGAGG 59.796 52.381 0.00 0.00 0.00 4.30
2604 2964 2.649331 ACACTTATTCACGGACGGAG 57.351 50.000 0.00 0.00 0.00 4.63
2605 2965 2.819019 TGTACACTTATTCACGGACGGA 59.181 45.455 0.00 0.00 0.00 4.69
2606 2966 3.220507 TGTACACTTATTCACGGACGG 57.779 47.619 0.00 0.00 0.00 4.79
2607 2967 4.669318 AGATGTACACTTATTCACGGACG 58.331 43.478 0.00 0.00 0.00 4.79
2608 2968 5.686397 GCTAGATGTACACTTATTCACGGAC 59.314 44.000 0.00 0.00 0.00 4.79
2609 2969 5.593095 AGCTAGATGTACACTTATTCACGGA 59.407 40.000 0.00 0.00 0.00 4.69
2610 2970 5.833082 AGCTAGATGTACACTTATTCACGG 58.167 41.667 0.00 0.00 0.00 4.94
2611 2971 7.757097 AAAGCTAGATGTACACTTATTCACG 57.243 36.000 0.00 0.00 0.00 4.35
2612 2972 8.936864 ACAAAAGCTAGATGTACACTTATTCAC 58.063 33.333 0.00 0.00 0.00 3.18
2613 2973 9.151471 GACAAAAGCTAGATGTACACTTATTCA 57.849 33.333 0.00 0.00 0.00 2.57
2614 2974 8.604890 GGACAAAAGCTAGATGTACACTTATTC 58.395 37.037 0.00 0.00 0.00 1.75
2615 2975 8.322091 AGGACAAAAGCTAGATGTACACTTATT 58.678 33.333 0.00 0.00 30.01 1.40
2616 2976 7.852263 AGGACAAAAGCTAGATGTACACTTAT 58.148 34.615 0.00 0.00 30.01 1.73
2617 2977 7.241042 AGGACAAAAGCTAGATGTACACTTA 57.759 36.000 0.00 0.00 30.01 2.24
2618 2978 6.115448 AGGACAAAAGCTAGATGTACACTT 57.885 37.500 0.00 0.00 30.01 3.16
2619 2979 5.746990 AGGACAAAAGCTAGATGTACACT 57.253 39.130 0.00 0.13 30.01 3.55
2620 2980 7.097834 ACTTAGGACAAAAGCTAGATGTACAC 58.902 38.462 0.00 0.00 30.01 2.90
2621 2981 7.039293 TGACTTAGGACAAAAGCTAGATGTACA 60.039 37.037 0.00 0.00 30.01 2.90
2622 2982 7.321153 TGACTTAGGACAAAAGCTAGATGTAC 58.679 38.462 0.00 0.00 0.00 2.90
2623 2983 7.476540 TGACTTAGGACAAAAGCTAGATGTA 57.523 36.000 0.00 0.00 0.00 2.29
2624 2984 6.360370 TGACTTAGGACAAAAGCTAGATGT 57.640 37.500 0.00 0.00 0.00 3.06
2625 2985 7.389053 ACTTTGACTTAGGACAAAAGCTAGATG 59.611 37.037 4.30 0.00 36.87 2.90
2626 2986 7.454225 ACTTTGACTTAGGACAAAAGCTAGAT 58.546 34.615 4.30 0.00 36.87 1.98
2627 2987 6.827727 ACTTTGACTTAGGACAAAAGCTAGA 58.172 36.000 4.30 0.00 36.87 2.43
2628 2988 7.497925 AACTTTGACTTAGGACAAAAGCTAG 57.502 36.000 4.30 0.00 36.87 3.42
2629 2989 7.875327 AAACTTTGACTTAGGACAAAAGCTA 57.125 32.000 4.30 0.00 36.87 3.32
2630 2990 6.775594 AAACTTTGACTTAGGACAAAAGCT 57.224 33.333 4.30 0.00 36.87 3.74
2631 2991 8.920509 TTAAAACTTTGACTTAGGACAAAAGC 57.079 30.769 4.30 0.00 36.87 3.51
2658 3018 9.996554 CTTTTTCCCTATAAAATTGGTCAAAGT 57.003 29.630 0.00 0.00 0.00 2.66
2659 3019 9.996554 ACTTTTTCCCTATAAAATTGGTCAAAG 57.003 29.630 0.00 0.00 0.00 2.77
2662 3022 9.816787 ACTACTTTTTCCCTATAAAATTGGTCA 57.183 29.630 0.00 0.00 0.00 4.02
2713 3073 9.453572 AGCTACATTTCAAAATGAATCTAGTGA 57.546 29.630 19.50 0.00 46.72 3.41
2768 3128 9.431887 CCAACTTTATAGAAAAGTGTAGTAGCA 57.568 33.333 4.05 0.00 40.10 3.49
2769 3129 9.433153 ACCAACTTTATAGAAAAGTGTAGTAGC 57.567 33.333 4.05 0.00 40.10 3.58
2772 3132 9.841295 TTGACCAACTTTATAGAAAAGTGTAGT 57.159 29.630 4.05 2.94 40.10 2.73
2802 3162 8.927721 GCTTTTGTACCAAGTCAAAGTTTTAAA 58.072 29.630 4.34 0.00 35.47 1.52
2803 3163 8.308207 AGCTTTTGTACCAAGTCAAAGTTTTAA 58.692 29.630 4.34 0.00 35.47 1.52
2804 3164 7.832769 AGCTTTTGTACCAAGTCAAAGTTTTA 58.167 30.769 4.34 0.00 35.47 1.52
2805 3165 6.697395 AGCTTTTGTACCAAGTCAAAGTTTT 58.303 32.000 4.34 0.00 35.47 2.43
2806 3166 6.280855 AGCTTTTGTACCAAGTCAAAGTTT 57.719 33.333 4.34 0.00 35.47 2.66
2807 3167 5.914898 AGCTTTTGTACCAAGTCAAAGTT 57.085 34.783 4.34 0.00 35.47 2.66
2808 3168 6.354130 TCTAGCTTTTGTACCAAGTCAAAGT 58.646 36.000 0.00 0.00 35.47 2.66
2809 3169 6.861065 TCTAGCTTTTGTACCAAGTCAAAG 57.139 37.500 0.00 0.00 35.47 2.77
2810 3170 6.770785 ACATCTAGCTTTTGTACCAAGTCAAA 59.229 34.615 0.00 0.00 32.75 2.69
2811 3171 6.296026 ACATCTAGCTTTTGTACCAAGTCAA 58.704 36.000 0.00 0.00 0.00 3.18
2812 3172 5.865085 ACATCTAGCTTTTGTACCAAGTCA 58.135 37.500 0.00 0.00 0.00 3.41
2813 3173 6.872020 TGTACATCTAGCTTTTGTACCAAGTC 59.128 38.462 21.21 5.76 43.13 3.01
2814 3174 6.649557 GTGTACATCTAGCTTTTGTACCAAGT 59.350 38.462 21.21 1.75 43.13 3.16
2815 3175 6.874134 AGTGTACATCTAGCTTTTGTACCAAG 59.126 38.462 21.21 0.00 43.13 3.61
2816 3176 6.765403 AGTGTACATCTAGCTTTTGTACCAA 58.235 36.000 21.21 8.94 43.13 3.67
2817 3177 6.354794 AGTGTACATCTAGCTTTTGTACCA 57.645 37.500 21.21 12.29 43.13 3.25
2818 3178 8.943909 ATAAGTGTACATCTAGCTTTTGTACC 57.056 34.615 21.21 15.58 43.13 3.34
2820 3180 9.297586 CGAATAAGTGTACATCTAGCTTTTGTA 57.702 33.333 0.00 0.00 0.00 2.41
2821 3181 7.201530 GCGAATAAGTGTACATCTAGCTTTTGT 60.202 37.037 0.00 0.00 0.00 2.83
2822 3182 7.119997 GCGAATAAGTGTACATCTAGCTTTTG 58.880 38.462 0.00 0.00 0.00 2.44
2823 3183 6.816640 TGCGAATAAGTGTACATCTAGCTTTT 59.183 34.615 0.00 0.00 0.00 2.27
2824 3184 6.338146 TGCGAATAAGTGTACATCTAGCTTT 58.662 36.000 0.00 0.00 0.00 3.51
2825 3185 5.902681 TGCGAATAAGTGTACATCTAGCTT 58.097 37.500 0.00 0.00 0.00 3.74
2826 3186 5.299531 TCTGCGAATAAGTGTACATCTAGCT 59.700 40.000 0.00 0.00 0.00 3.32
2827 3187 5.399892 GTCTGCGAATAAGTGTACATCTAGC 59.600 44.000 0.00 0.00 0.00 3.42
2828 3188 5.621634 CGTCTGCGAATAAGTGTACATCTAG 59.378 44.000 0.00 0.00 41.33 2.43
2829 3189 5.505159 CCGTCTGCGAATAAGTGTACATCTA 60.505 44.000 0.00 0.00 41.33 1.98
2830 3190 4.352039 CGTCTGCGAATAAGTGTACATCT 58.648 43.478 0.00 0.00 41.33 2.90
2831 3191 3.486108 CCGTCTGCGAATAAGTGTACATC 59.514 47.826 0.00 0.00 41.33 3.06
2832 3192 3.129813 TCCGTCTGCGAATAAGTGTACAT 59.870 43.478 0.00 0.00 41.33 2.29
2833 3193 2.488937 TCCGTCTGCGAATAAGTGTACA 59.511 45.455 0.00 0.00 41.33 2.90
2834 3194 3.106672 CTCCGTCTGCGAATAAGTGTAC 58.893 50.000 0.00 0.00 41.33 2.90
2835 3195 2.098607 CCTCCGTCTGCGAATAAGTGTA 59.901 50.000 0.00 0.00 41.33 2.90
2836 3196 1.135083 CCTCCGTCTGCGAATAAGTGT 60.135 52.381 0.00 0.00 41.33 3.55
2837 3197 1.560923 CCTCCGTCTGCGAATAAGTG 58.439 55.000 0.00 0.00 41.33 3.16
2838 3198 0.460311 CCCTCCGTCTGCGAATAAGT 59.540 55.000 0.00 0.00 41.33 2.24
2839 3199 0.744874 TCCCTCCGTCTGCGAATAAG 59.255 55.000 0.00 0.00 41.33 1.73
2840 3200 1.187974 TTCCCTCCGTCTGCGAATAA 58.812 50.000 0.00 0.00 41.33 1.40
2841 3201 1.410004 ATTCCCTCCGTCTGCGAATA 58.590 50.000 0.00 0.00 41.33 1.75
2842 3202 1.068741 GTATTCCCTCCGTCTGCGAAT 59.931 52.381 0.00 0.00 41.33 3.34
2843 3203 0.458669 GTATTCCCTCCGTCTGCGAA 59.541 55.000 0.00 0.00 41.33 4.70
2844 3204 0.395311 AGTATTCCCTCCGTCTGCGA 60.395 55.000 0.00 0.00 41.33 5.10
2845 3205 0.460311 AAGTATTCCCTCCGTCTGCG 59.540 55.000 0.00 0.00 37.95 5.18
2846 3206 4.338379 AATAAGTATTCCCTCCGTCTGC 57.662 45.455 0.00 0.00 0.00 4.26
2847 3207 5.047235 CCCTAATAAGTATTCCCTCCGTCTG 60.047 48.000 0.00 0.00 0.00 3.51
2848 3208 5.085219 CCCTAATAAGTATTCCCTCCGTCT 58.915 45.833 0.00 0.00 0.00 4.18
2849 3209 4.837298 ACCCTAATAAGTATTCCCTCCGTC 59.163 45.833 0.00 0.00 0.00 4.79
2850 3210 4.591924 CACCCTAATAAGTATTCCCTCCGT 59.408 45.833 0.00 0.00 0.00 4.69
2851 3211 4.591924 ACACCCTAATAAGTATTCCCTCCG 59.408 45.833 0.00 0.00 0.00 4.63
2852 3212 5.368816 ACACACCCTAATAAGTATTCCCTCC 59.631 44.000 0.00 0.00 0.00 4.30
2853 3213 6.126854 ACACACACCCTAATAAGTATTCCCTC 60.127 42.308 0.00 0.00 0.00 4.30
2854 3214 5.729718 ACACACACCCTAATAAGTATTCCCT 59.270 40.000 0.00 0.00 0.00 4.20
2855 3215 5.997843 ACACACACCCTAATAAGTATTCCC 58.002 41.667 0.00 0.00 0.00 3.97
2860 3220 9.258629 ACAGTAATACACACACCCTAATAAGTA 57.741 33.333 0.00 0.00 0.00 2.24
2984 3346 6.039717 GCCAGCAATGAGGTCTTTTATATTCA 59.960 38.462 0.00 0.00 0.00 2.57
3148 3553 1.604604 AGCCAGCGCTTAAGAAAACA 58.395 45.000 7.50 0.00 45.55 2.83
3155 3560 6.097915 AGTATAATCTTAGCCAGCGCTTAA 57.902 37.500 7.50 3.06 45.55 1.85
3156 3561 5.336531 GGAGTATAATCTTAGCCAGCGCTTA 60.337 44.000 7.50 0.00 45.55 3.09
3157 3562 4.561105 GAGTATAATCTTAGCCAGCGCTT 58.439 43.478 7.50 0.00 45.55 4.68
3159 3564 3.254892 GGAGTATAATCTTAGCCAGCGC 58.745 50.000 0.00 0.00 0.00 5.92
3282 3693 8.893219 TGCTGATATCTCATTAACTACCAAAG 57.107 34.615 3.98 0.00 0.00 2.77
3629 4052 4.431809 TGACAAGCAAACAATGAAGGTTG 58.568 39.130 11.93 11.93 43.07 3.77
3640 4064 7.271223 GTGATTATGTGTGTATGACAAGCAAAC 59.729 37.037 0.00 0.00 35.91 2.93
3653 4079 6.294675 CCTCAACAAATGGTGATTATGTGTGT 60.295 38.462 0.91 0.00 41.51 3.72
3656 4082 5.418524 TCCCTCAACAAATGGTGATTATGTG 59.581 40.000 0.91 0.00 41.51 3.21
3660 4086 5.640147 ACTTCCCTCAACAAATGGTGATTA 58.360 37.500 0.91 0.00 41.51 1.75
3679 4105 3.511934 TCAGAGAGGAAGGCAGTAACTTC 59.488 47.826 0.00 0.00 42.73 3.01
3776 4208 3.669536 CTTCTTGTCCTGAACTCCCTTC 58.330 50.000 0.00 0.00 0.00 3.46
3812 4244 3.425193 GCAAAAACAAATACCTGACTGCG 59.575 43.478 0.00 0.00 0.00 5.18
3842 4274 6.037940 CAGATCAGTGGAACAGGAACATAATG 59.962 42.308 0.00 0.00 41.80 1.90
3874 4309 5.123344 AGTTACATTCGGTTAGCATGTTTCC 59.877 40.000 0.00 0.00 37.80 3.13
3888 4323 7.237173 GTCTGAAAATGGAGAAGTTACATTCG 58.763 38.462 0.00 0.00 34.00 3.34
3893 4328 9.886132 TTATAGGTCTGAAAATGGAGAAGTTAC 57.114 33.333 0.00 0.00 0.00 2.50
3900 4335 8.970859 AATCAGTTATAGGTCTGAAAATGGAG 57.029 34.615 7.91 0.00 42.67 3.86
3905 4340 9.146984 CGTTGTAATCAGTTATAGGTCTGAAAA 57.853 33.333 7.91 0.05 42.67 2.29
3960 4395 1.594862 GTGTTCTCTATGTGCATCCGC 59.405 52.381 0.00 0.00 39.24 5.54
4010 4445 4.782019 TCTGCATTGAACATTTGGTACC 57.218 40.909 4.43 4.43 0.00 3.34
4018 4453 4.508551 TGGGAGTATCTGCATTGAACAT 57.491 40.909 0.00 0.00 33.73 2.71
4024 4459 6.271857 AGAGTTATCATGGGAGTATCTGCATT 59.728 38.462 0.00 0.00 33.73 3.56
4048 4483 6.090483 TCTTCTAACTGAGGACAAACAGAG 57.910 41.667 0.00 0.00 37.54 3.35
4159 4594 0.179179 GCTTCGCTCAATCTGTTGGC 60.179 55.000 0.00 0.00 35.99 4.52
4212 4647 4.520111 ACTCAAACATTGCAATCACAGCTA 59.480 37.500 9.53 0.00 0.00 3.32
4229 4664 4.659111 TCTACTGTTCGAACCACTCAAA 57.341 40.909 24.78 4.00 0.00 2.69
4241 4676 7.201333 GCACACGAATAGTTAGTTCTACTGTTC 60.201 40.741 0.00 0.00 39.16 3.18
4246 4681 7.967303 AGTTAGCACACGAATAGTTAGTTCTAC 59.033 37.037 0.00 0.00 0.00 2.59
4249 4684 7.967303 ACTAGTTAGCACACGAATAGTTAGTTC 59.033 37.037 0.00 0.00 0.00 3.01
4250 4685 7.824672 ACTAGTTAGCACACGAATAGTTAGTT 58.175 34.615 0.00 0.00 0.00 2.24
4251 4686 7.120285 TGACTAGTTAGCACACGAATAGTTAGT 59.880 37.037 0.00 0.00 0.00 2.24
4252 4687 7.470079 TGACTAGTTAGCACACGAATAGTTAG 58.530 38.462 0.00 0.00 0.00 2.34
4253 4688 7.381766 TGACTAGTTAGCACACGAATAGTTA 57.618 36.000 0.00 0.00 0.00 2.24
4258 4693 5.720202 TGAATGACTAGTTAGCACACGAAT 58.280 37.500 0.00 0.00 0.00 3.34
4262 4697 6.595716 AGGAAATGAATGACTAGTTAGCACAC 59.404 38.462 0.00 0.00 0.00 3.82
4263 4698 6.711277 AGGAAATGAATGACTAGTTAGCACA 58.289 36.000 0.00 0.00 0.00 4.57
4274 4709 5.105635 TGCAGGAATGAAGGAAATGAATGAC 60.106 40.000 0.00 0.00 0.00 3.06
4302 4740 2.886124 GTTCCGCTAGTCGCTGGC 60.886 66.667 5.38 5.38 36.73 4.85
4307 4745 0.387622 TCCGTTTGTTCCGCTAGTCG 60.388 55.000 0.00 0.00 38.08 4.18
4311 4749 0.458889 CCGATCCGTTTGTTCCGCTA 60.459 55.000 0.00 0.00 0.00 4.26
4329 4767 1.135199 TGCGTGTAGAAATCGGTCTCC 60.135 52.381 0.00 0.00 0.00 3.71
4335 4773 0.370273 GCACCTGCGTGTAGAAATCG 59.630 55.000 0.00 0.00 42.39 3.34
4374 4812 1.000385 TGCACAGCTTACATGTTTGCC 60.000 47.619 2.30 0.00 0.00 4.52
4398 4836 1.478631 CAAGGGAAGGAAGGATTGGC 58.521 55.000 0.00 0.00 0.00 4.52
4424 4862 7.119699 TGTCAAGCATAAAAGTCAGTTGATAGG 59.880 37.037 0.00 0.00 0.00 2.57
4425 4863 8.032952 TGTCAAGCATAAAAGTCAGTTGATAG 57.967 34.615 0.00 0.00 0.00 2.08
4426 4864 7.977789 TGTCAAGCATAAAAGTCAGTTGATA 57.022 32.000 0.00 0.00 0.00 2.15
4429 4867 9.926751 CTATATGTCAAGCATAAAAGTCAGTTG 57.073 33.333 0.00 0.00 42.68 3.16
4430 4868 9.113838 CCTATATGTCAAGCATAAAAGTCAGTT 57.886 33.333 0.00 0.00 42.68 3.16
4431 4869 7.227512 GCCTATATGTCAAGCATAAAAGTCAGT 59.772 37.037 0.00 0.00 42.68 3.41
4432 4870 7.308229 GGCCTATATGTCAAGCATAAAAGTCAG 60.308 40.741 0.00 0.00 42.68 3.51
4433 4871 6.486657 GGCCTATATGTCAAGCATAAAAGTCA 59.513 38.462 0.00 0.00 42.68 3.41
4434 4872 6.486657 TGGCCTATATGTCAAGCATAAAAGTC 59.513 38.462 3.32 0.00 42.68 3.01
4435 4873 6.364701 TGGCCTATATGTCAAGCATAAAAGT 58.635 36.000 3.32 0.00 42.68 2.66
4436 4874 6.882610 TGGCCTATATGTCAAGCATAAAAG 57.117 37.500 3.32 0.00 42.68 2.27
4437 4875 7.003482 TCATGGCCTATATGTCAAGCATAAAA 58.997 34.615 3.32 0.00 42.68 1.52
4441 4879 4.645863 TCATGGCCTATATGTCAAGCAT 57.354 40.909 3.32 0.00 41.42 3.79
4448 4886 5.387113 TCAGGTTTTCATGGCCTATATGT 57.613 39.130 3.32 0.00 32.00 2.29
4452 4890 4.803329 AGATCAGGTTTTCATGGCCTAT 57.197 40.909 3.32 0.00 32.00 2.57
4455 4893 5.241728 GGTAATAGATCAGGTTTTCATGGCC 59.758 44.000 0.00 0.00 32.00 5.36
4460 4898 6.126883 ACGATGGGTAATAGATCAGGTTTTCA 60.127 38.462 0.00 0.00 0.00 2.69
4461 4899 6.289064 ACGATGGGTAATAGATCAGGTTTTC 58.711 40.000 0.00 0.00 0.00 2.29
4465 4903 5.711036 GTCTACGATGGGTAATAGATCAGGT 59.289 44.000 0.00 0.00 0.00 4.00
4470 4908 4.942483 CGGAGTCTACGATGGGTAATAGAT 59.058 45.833 0.00 0.00 0.00 1.98
4473 4911 2.816087 GCGGAGTCTACGATGGGTAATA 59.184 50.000 9.18 0.00 0.00 0.98
4477 4915 0.755698 ATGCGGAGTCTACGATGGGT 60.756 55.000 9.18 0.00 0.00 4.51
4480 4918 3.902150 ACAATATGCGGAGTCTACGATG 58.098 45.455 9.18 1.15 0.00 3.84
4481 4919 4.547532 GAACAATATGCGGAGTCTACGAT 58.452 43.478 9.18 1.73 0.00 3.73
4484 4922 4.038162 AGAGGAACAATATGCGGAGTCTAC 59.962 45.833 0.00 0.00 0.00 2.59
4487 4925 3.460857 AGAGGAACAATATGCGGAGTC 57.539 47.619 0.00 0.00 0.00 3.36
4492 4930 7.015226 TGATGTAAAAGAGGAACAATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
4664 5103 4.330894 CAGCAATACATCATCGTGTGTCTT 59.669 41.667 0.00 0.00 33.62 3.01
4700 5139 3.135348 CCCTGCATATCAGAGGTGAAAGA 59.865 47.826 0.00 0.00 45.72 2.52
4702 5141 3.114606 TCCCTGCATATCAGAGGTGAAA 58.885 45.455 0.00 0.00 45.72 2.69
4739 5178 2.978000 ATGTGCCCGACATCGACA 59.022 55.556 2.09 0.00 41.91 4.35
4799 5283 2.552743 CACTCGGTTACAGACTCAGTCA 59.447 50.000 7.77 0.00 34.60 3.41
4824 5308 1.060713 CGAACGCTGACTTGTAGTGG 58.939 55.000 0.00 0.00 0.00 4.00
4826 5310 1.662309 CGACGAACGCTGACTTGTAGT 60.662 52.381 0.00 0.00 34.51 2.73
4827 5311 0.975544 CGACGAACGCTGACTTGTAG 59.024 55.000 0.00 0.00 34.51 2.74
4828 5312 0.587768 TCGACGAACGCTGACTTGTA 59.412 50.000 0.00 0.00 42.26 2.41
4829 5313 0.933509 GTCGACGAACGCTGACTTGT 60.934 55.000 0.00 0.00 42.26 3.16
4830 5314 0.660595 AGTCGACGAACGCTGACTTG 60.661 55.000 10.46 0.00 38.48 3.16
4831 5315 0.660595 CAGTCGACGAACGCTGACTT 60.661 55.000 10.46 3.74 43.30 3.01
4832 5316 1.082038 CAGTCGACGAACGCTGACT 60.082 57.895 10.46 13.35 43.30 3.41
4833 5317 1.370172 ACAGTCGACGAACGCTGAC 60.370 57.895 17.78 10.04 43.30 3.51
4834 5318 1.370051 CACAGTCGACGAACGCTGA 60.370 57.895 17.78 0.00 43.30 4.26
4835 5319 1.597700 GACACAGTCGACGAACGCTG 61.598 60.000 10.46 11.24 44.75 5.18
4836 5320 1.370172 GACACAGTCGACGAACGCT 60.370 57.895 10.46 0.00 42.26 5.07
4837 5321 1.370172 AGACACAGTCGACGAACGC 60.370 57.895 10.46 1.26 42.26 4.84
4838 5322 0.316772 ACAGACACAGTCGACGAACG 60.317 55.000 10.46 2.86 44.09 3.95
4839 5323 2.675767 TACAGACACAGTCGACGAAC 57.324 50.000 10.46 1.78 37.67 3.95
4840 5324 2.287188 GGTTACAGACACAGTCGACGAA 60.287 50.000 10.46 0.00 37.67 3.85
4841 5325 1.265095 GGTTACAGACACAGTCGACGA 59.735 52.381 10.46 0.00 37.67 4.20
4842 5326 1.682982 GGTTACAGACACAGTCGACG 58.317 55.000 10.46 7.86 37.67 5.12
4843 5327 1.265095 TCGGTTACAGACACAGTCGAC 59.735 52.381 7.70 7.70 37.67 4.20
4844 5328 1.534163 CTCGGTTACAGACACAGTCGA 59.466 52.381 0.00 0.00 37.67 4.20
4845 5329 1.266175 ACTCGGTTACAGACACAGTCG 59.734 52.381 0.00 0.00 37.67 4.18
4846 5330 2.662700 CACTCGGTTACAGACACAGTC 58.337 52.381 0.00 0.00 0.00 3.51
4847 5331 1.269621 GCACTCGGTTACAGACACAGT 60.270 52.381 0.00 0.00 0.00 3.55
4848 5332 1.419374 GCACTCGGTTACAGACACAG 58.581 55.000 0.00 0.00 0.00 3.66
4849 5333 0.032952 GGCACTCGGTTACAGACACA 59.967 55.000 0.00 0.00 0.00 3.72
4850 5334 1.007336 CGGCACTCGGTTACAGACAC 61.007 60.000 0.00 0.00 34.75 3.67
4851 5335 1.287815 CGGCACTCGGTTACAGACA 59.712 57.895 0.00 0.00 34.75 3.41
4852 5336 2.092882 GCGGCACTCGGTTACAGAC 61.093 63.158 0.00 0.00 39.69 3.51
4853 5337 2.260434 GCGGCACTCGGTTACAGA 59.740 61.111 0.00 0.00 39.69 3.41
4854 5338 2.813908 GGCGGCACTCGGTTACAG 60.814 66.667 3.07 0.00 39.69 2.74
4855 5339 2.845752 GATGGCGGCACTCGGTTACA 62.846 60.000 16.34 0.00 39.69 2.41
4856 5340 2.125269 ATGGCGGCACTCGGTTAC 60.125 61.111 16.34 0.00 39.69 2.50
4857 5341 2.185867 GATGGCGGCACTCGGTTA 59.814 61.111 16.34 0.00 39.69 2.85
4858 5342 4.015406 TGATGGCGGCACTCGGTT 62.015 61.111 16.34 0.00 39.69 4.44
4859 5343 4.760047 GTGATGGCGGCACTCGGT 62.760 66.667 16.34 0.00 39.69 4.69
4860 5344 4.457496 AGTGATGGCGGCACTCGG 62.457 66.667 16.34 0.00 42.62 4.63
4864 5348 3.716539 TAGCGAGTGATGGCGGCAC 62.717 63.158 16.34 9.31 36.53 5.01
4865 5349 3.430565 CTAGCGAGTGATGGCGGCA 62.431 63.158 16.34 16.34 0.00 5.69
4866 5350 2.659897 CTAGCGAGTGATGGCGGC 60.660 66.667 0.00 0.00 0.00 6.53
4867 5351 2.659897 GCTAGCGAGTGATGGCGG 60.660 66.667 0.00 0.00 0.00 6.13
4868 5352 1.280886 GATGCTAGCGAGTGATGGCG 61.281 60.000 10.77 0.00 41.37 5.69
4869 5353 0.033228 AGATGCTAGCGAGTGATGGC 59.967 55.000 10.77 0.00 38.61 4.40
4921 5405 0.545646 GCCAGAAGATGCTTCCCTCT 59.454 55.000 3.71 0.00 0.00 3.69
4924 5408 0.750911 CCAGCCAGAAGATGCTTCCC 60.751 60.000 3.71 0.00 35.12 3.97
4938 5422 2.027745 TCATGTCTCTCAAACTCCAGCC 60.028 50.000 0.00 0.00 0.00 4.85
4966 5451 1.666054 GAGCATCCTCTCAAGCCAAG 58.334 55.000 0.00 0.00 35.16 3.61
5012 5504 2.223923 GCTCATACGCCTCTGATCAACT 60.224 50.000 0.00 0.00 0.00 3.16
5220 5749 3.551890 ACAGTGTAATAATCTCTTGCGCG 59.448 43.478 0.00 0.00 0.00 6.86
5223 5754 6.998338 CACAGACAGTGTAATAATCTCTTGC 58.002 40.000 0.00 0.00 43.40 4.01
5258 5789 3.005367 TGAGTGTTCGATCAGTGTAAGCA 59.995 43.478 8.54 0.00 0.00 3.91
5259 5790 3.575630 TGAGTGTTCGATCAGTGTAAGC 58.424 45.455 8.54 0.00 0.00 3.09
5269 5800 7.549134 TGCTTTAGTCAATTATGAGTGTTCGAT 59.451 33.333 0.00 0.00 39.57 3.59
5270 5801 6.871492 TGCTTTAGTCAATTATGAGTGTTCGA 59.129 34.615 0.00 0.00 39.57 3.71
5324 5874 7.069331 CCTTGAAGAGATAGGTCAGTGTAATCT 59.931 40.741 0.00 0.00 0.00 2.40
5371 5960 6.992063 AATGCTCGTCTCAACAAATAGATT 57.008 33.333 0.00 0.00 0.00 2.40
5402 6180 1.613437 ACAGACAAGGGGCAAAAATCG 59.387 47.619 0.00 0.00 0.00 3.34
5471 6253 9.979578 AAAAATACTGACAATCAAGCAATACAA 57.020 25.926 0.00 0.00 0.00 2.41
5536 6318 2.489722 CTCATGACTGACCGAGAGACAA 59.510 50.000 0.00 0.00 0.00 3.18
5611 7283 5.099575 TCAAAGCTTCCTCGTTTCAAAAAC 58.900 37.500 0.00 0.00 0.00 2.43
5617 7289 4.222114 CAACATCAAAGCTTCCTCGTTTC 58.778 43.478 0.00 0.00 0.00 2.78
5627 7299 0.963962 CCACCTGCAACATCAAAGCT 59.036 50.000 0.00 0.00 0.00 3.74
5651 7323 5.481473 AGAGCTCCTGAGATATCATTTCTCC 59.519 44.000 10.93 0.00 39.10 3.71
5716 7402 7.219484 AGAAATGTGGTCCAAAATGTCTAAG 57.781 36.000 6.69 0.00 0.00 2.18
5717 7403 7.595819 AAGAAATGTGGTCCAAAATGTCTAA 57.404 32.000 8.36 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.