Multiple sequence alignment - TraesCS6B01G461400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G461400 chr6B 100.000 5513 0 0 974 6486 714632536 714638048 0.000000e+00 10181.0
1 TraesCS6B01G461400 chr6B 100.000 626 0 0 1 626 714631563 714632188 0.000000e+00 1157.0
2 TraesCS6B01G461400 chr6B 93.431 137 3 1 6330 6466 714960657 714960787 1.430000e-46 198.0
3 TraesCS6B01G461400 chr6D 94.997 1959 63 14 4529 6485 468843232 468845157 0.000000e+00 3042.0
4 TraesCS6B01G461400 chr6D 93.429 1750 93 7 2597 4342 468841385 468843116 0.000000e+00 2575.0
5 TraesCS6B01G461400 chr6D 96.164 391 13 1 2206 2594 468840768 468841158 7.090000e-179 638.0
6 TraesCS6B01G461400 chr6D 85.254 590 55 8 50 626 468839056 468839626 4.360000e-161 579.0
7 TraesCS6B01G461400 chr6D 90.491 326 18 6 1397 1714 468840178 468840498 1.010000e-112 418.0
8 TraesCS6B01G461400 chr6D 83.784 444 37 20 974 1395 468839712 468840142 7.890000e-104 388.0
9 TraesCS6B01G461400 chr6D 92.925 212 15 0 1794 2005 365722639 365722850 6.320000e-80 309.0
10 TraesCS6B01G461400 chr6D 89.815 216 13 2 2004 2210 468840525 468840740 1.070000e-67 268.0
11 TraesCS6B01G461400 chr6D 87.209 86 7 2 1112 1194 24823417 24823333 1.930000e-15 95.3
12 TraesCS6B01G461400 chr6D 97.059 34 0 1 4341 4374 468843201 468843233 1.000000e-03 56.5
13 TraesCS6B01G461400 chrUn 95.528 984 31 5 4354 5336 75179056 75178085 0.000000e+00 1561.0
14 TraesCS6B01G461400 chrUn 87.420 1097 121 12 2604 3687 75181006 75179914 0.000000e+00 1245.0
15 TraesCS6B01G461400 chrUn 91.038 915 37 18 5151 6057 75178027 75177150 0.000000e+00 1194.0
16 TraesCS6B01G461400 chrUn 89.571 326 21 5 302 626 75183173 75182860 1.010000e-107 401.0
17 TraesCS6B01G461400 chrUn 88.421 285 33 0 6201 6485 75176833 75176549 1.730000e-90 344.0
18 TraesCS6B01G461400 chrUn 79.909 438 64 20 3692 4118 75179587 75179163 3.800000e-77 300.0
19 TraesCS6B01G461400 chrUn 79.853 407 41 18 2202 2594 75181625 75181246 6.450000e-65 259.0
20 TraesCS6B01G461400 chr3B 93.396 212 14 0 1794 2005 259369447 259369658 1.360000e-81 315.0
21 TraesCS6B01G461400 chr3B 95.745 47 1 1 1756 1801 678312705 678312751 2.510000e-09 75.0
22 TraesCS6B01G461400 chr3B 95.745 47 1 1 1756 1801 817601370 817601416 2.510000e-09 75.0
23 TraesCS6B01G461400 chr7D 93.396 212 13 1 1794 2005 500979167 500978957 4.880000e-81 313.0
24 TraesCS6B01G461400 chr7D 90.541 74 6 1 1117 1190 401536699 401536771 5.350000e-16 97.1
25 TraesCS6B01G461400 chr7D 100.000 40 0 0 1756 1795 47235520 47235559 2.510000e-09 75.0
26 TraesCS6B01G461400 chr7D 100.000 40 0 0 1756 1795 277745535 277745496 2.510000e-09 75.0
27 TraesCS6B01G461400 chr4B 92.593 216 16 0 1794 2009 38549644 38549859 1.760000e-80 311.0
28 TraesCS6B01G461400 chr4B 92.523 214 16 0 1794 2007 273957591 273957378 2.270000e-79 307.0
29 TraesCS6B01G461400 chr5B 92.958 213 13 2 1794 2005 84937162 84937373 6.320000e-80 309.0
30 TraesCS6B01G461400 chr5D 92.523 214 16 0 1794 2007 554400540 554400753 2.270000e-79 307.0
31 TraesCS6B01G461400 chr1D 92.523 214 16 0 1795 2008 144395370 144395157 2.270000e-79 307.0
32 TraesCS6B01G461400 chr1D 92.523 214 16 0 1794 2007 171745292 171745079 2.270000e-79 307.0
33 TraesCS6B01G461400 chr1D 91.176 68 5 1 1109 1175 141705978 141706045 2.490000e-14 91.6
34 TraesCS6B01G461400 chr3D 87.500 88 9 1 1104 1191 523157470 523157385 4.140000e-17 100.0
35 TraesCS6B01G461400 chr7B 92.647 68 5 0 1112 1179 13801861 13801928 1.490000e-16 99.0
36 TraesCS6B01G461400 chr6A 91.549 71 6 0 1122 1192 14351004 14351074 1.490000e-16 99.0
37 TraesCS6B01G461400 chr6A 100.000 40 0 0 1756 1795 575540207 575540168 2.510000e-09 75.0
38 TraesCS6B01G461400 chr2A 87.805 82 10 0 1107 1188 67713360 67713279 5.350000e-16 97.1
39 TraesCS6B01G461400 chr2A 85.556 90 11 1 1101 1188 67978676 67978587 6.920000e-15 93.5
40 TraesCS6B01G461400 chr7A 100.000 42 0 0 1754 1795 690917358 690917399 1.940000e-10 78.7
41 TraesCS6B01G461400 chr5A 100.000 40 0 0 1756 1795 668190648 668190687 2.510000e-09 75.0
42 TraesCS6B01G461400 chr4A 100.000 40 0 0 1756 1795 733880918 733880879 2.510000e-09 75.0
43 TraesCS6B01G461400 chr1A 100.000 40 0 0 1756 1795 272210564 272210603 2.510000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G461400 chr6B 714631563 714638048 6485 False 5669.000000 10181 100.000000 1 6486 2 chr6B.!!$F2 6485
1 TraesCS6B01G461400 chr6D 468839056 468845157 6101 False 995.562500 3042 91.374125 50 6485 8 chr6D.!!$F2 6435
2 TraesCS6B01G461400 chrUn 75176549 75183173 6624 True 757.714286 1561 87.391429 302 6485 7 chrUn.!!$R1 6183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.975135 TTTACCGGTCCATTCGTCCA 59.025 50.0 12.40 0.00 0.00 4.02 F
1880 1986 0.107831 TTTGCCTAGGTTCACGTGCT 59.892 50.0 11.67 4.94 0.00 4.40 F
2404 2760 0.250684 TTGCTCTTGGTCGCAATGGA 60.251 50.0 0.00 0.00 40.84 3.41 F
3193 3797 0.324368 AGGACGACCTCATGCTGGTA 60.324 55.0 0.00 0.00 44.13 3.25 F
3341 3945 0.036732 ATGGCCAGAGAAGCGAAACA 59.963 50.0 13.05 0.00 0.00 2.83 F
3496 4100 0.179004 ATGGCGGTCACAAAAGGACA 60.179 50.0 0.00 0.00 37.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2136 0.036164 ATGGCTACGTGCACCTTTGA 59.964 50.000 12.15 0.0 45.15 2.69 R
3193 3797 0.321122 CCTTCTCCAACTCAGCGCTT 60.321 55.000 7.50 0.0 0.00 4.68 R
3336 3940 0.529119 ACGACGTCCACCACTGTTTC 60.529 55.000 10.58 0.0 0.00 2.78 R
4281 5283 0.603065 CCCTAAAGCAAACTGCCACC 59.397 55.000 0.00 0.0 46.52 4.61 R
4531 5630 1.079057 TTGGCAGCCGTACGCATTA 60.079 52.632 10.49 0.0 41.38 1.90 R
5493 6831 0.254178 TCTTCCAGCTTCCCTGCATC 59.746 55.000 0.00 0.0 40.36 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.316029 TAGGTTCGGTGATGGGCC 58.684 61.111 0.00 0.00 0.00 5.80
24 25 4.041762 GGTGATGGGCCGGGTTGA 62.042 66.667 2.18 0.00 0.00 3.18
25 26 2.750237 GTGATGGGCCGGGTTGAC 60.750 66.667 2.18 0.00 0.00 3.18
26 27 3.253061 TGATGGGCCGGGTTGACA 61.253 61.111 2.18 0.00 0.00 3.58
27 28 2.275418 GATGGGCCGGGTTGACAT 59.725 61.111 2.18 0.00 0.00 3.06
28 29 2.044053 ATGGGCCGGGTTGACATG 60.044 61.111 2.18 0.00 0.00 3.21
29 30 3.660422 ATGGGCCGGGTTGACATGG 62.660 63.158 2.18 0.00 0.00 3.66
32 33 3.443045 GCCGGGTTGACATGGCAG 61.443 66.667 0.00 0.00 46.76 4.85
33 34 2.350895 CCGGGTTGACATGGCAGA 59.649 61.111 0.00 0.00 0.00 4.26
34 35 2.040544 CCGGGTTGACATGGCAGAC 61.041 63.158 0.00 3.25 0.00 3.51
35 36 2.390599 CGGGTTGACATGGCAGACG 61.391 63.158 0.00 4.14 0.00 4.18
36 37 1.302511 GGGTTGACATGGCAGACGT 60.303 57.895 0.00 0.00 0.00 4.34
37 38 1.577328 GGGTTGACATGGCAGACGTG 61.577 60.000 0.00 0.00 41.98 4.49
46 47 4.065281 GCAGACGTGCCTACCCGT 62.065 66.667 0.00 0.00 44.72 5.28
47 48 2.654877 CAGACGTGCCTACCCGTT 59.345 61.111 0.00 0.00 37.44 4.44
48 49 1.005394 CAGACGTGCCTACCCGTTT 60.005 57.895 0.00 0.00 37.44 3.60
61 62 2.766736 ACCCGTTTCATATCCACCCTA 58.233 47.619 0.00 0.00 0.00 3.53
68 69 5.588648 CGTTTCATATCCACCCTACATTTGT 59.411 40.000 0.00 0.00 0.00 2.83
69 70 6.764085 CGTTTCATATCCACCCTACATTTGTA 59.236 38.462 0.00 0.00 0.00 2.41
79 80 6.183361 CCACCCTACATTTGTACTGGATATGA 60.183 42.308 8.00 0.00 0.00 2.15
80 81 6.931281 CACCCTACATTTGTACTGGATATGAG 59.069 42.308 8.00 0.00 0.00 2.90
81 82 6.844388 ACCCTACATTTGTACTGGATATGAGA 59.156 38.462 8.00 0.00 0.00 3.27
85 86 6.821388 ACATTTGTACTGGATATGAGAGACC 58.179 40.000 0.00 0.00 0.00 3.85
86 87 6.384015 ACATTTGTACTGGATATGAGAGACCA 59.616 38.462 0.00 0.00 0.00 4.02
89 90 3.298686 ACTGGATATGAGAGACCACGA 57.701 47.619 0.00 0.00 0.00 4.35
91 92 4.219115 ACTGGATATGAGAGACCACGAAT 58.781 43.478 0.00 0.00 0.00 3.34
93 94 5.475220 ACTGGATATGAGAGACCACGAATAG 59.525 44.000 0.00 0.00 0.00 1.73
95 96 4.461081 GGATATGAGAGACCACGAATAGCT 59.539 45.833 0.00 0.00 0.00 3.32
96 97 5.047660 GGATATGAGAGACCACGAATAGCTT 60.048 44.000 0.00 0.00 0.00 3.74
98 99 2.166459 TGAGAGACCACGAATAGCTTGG 59.834 50.000 0.00 0.00 41.50 3.61
108 109 4.631377 CACGAATAGCTTGGATGTTTGAGA 59.369 41.667 0.00 0.00 0.00 3.27
112 113 2.787994 AGCTTGGATGTTTGAGACCAG 58.212 47.619 0.00 0.00 33.85 4.00
121 122 5.107065 GGATGTTTGAGACCAGTTTAAGACG 60.107 44.000 0.00 0.00 0.00 4.18
124 125 3.678056 TGAGACCAGTTTAAGACGCAT 57.322 42.857 0.00 0.00 0.00 4.73
133 134 5.163622 CCAGTTTAAGACGCATGATTGGATT 60.164 40.000 0.00 0.00 0.00 3.01
134 135 5.967674 CAGTTTAAGACGCATGATTGGATTC 59.032 40.000 0.00 0.00 0.00 2.52
136 137 2.602257 AGACGCATGATTGGATTCGA 57.398 45.000 0.00 0.00 0.00 3.71
140 141 4.024556 AGACGCATGATTGGATTCGATTTC 60.025 41.667 0.00 0.00 0.00 2.17
141 142 3.879295 ACGCATGATTGGATTCGATTTCT 59.121 39.130 0.00 0.00 0.00 2.52
143 144 5.163622 ACGCATGATTGGATTCGATTTCTTT 60.164 36.000 0.00 0.00 0.00 2.52
144 145 5.745294 CGCATGATTGGATTCGATTTCTTTT 59.255 36.000 0.00 0.00 0.00 2.27
145 146 6.254157 CGCATGATTGGATTCGATTTCTTTTT 59.746 34.615 0.00 0.00 0.00 1.94
146 147 7.431960 CGCATGATTGGATTCGATTTCTTTTTA 59.568 33.333 0.00 0.00 0.00 1.52
147 148 8.534778 GCATGATTGGATTCGATTTCTTTTTAC 58.465 33.333 0.00 0.00 0.00 2.01
148 149 9.023967 CATGATTGGATTCGATTTCTTTTTACC 57.976 33.333 0.00 0.00 0.00 2.85
149 150 7.247728 TGATTGGATTCGATTTCTTTTTACCG 58.752 34.615 0.00 0.00 0.00 4.02
150 151 5.554822 TGGATTCGATTTCTTTTTACCGG 57.445 39.130 0.00 0.00 0.00 5.28
151 152 5.005094 TGGATTCGATTTCTTTTTACCGGT 58.995 37.500 13.98 13.98 0.00 5.28
152 153 5.122711 TGGATTCGATTTCTTTTTACCGGTC 59.877 40.000 12.40 0.00 0.00 4.79
159 160 3.405823 TCTTTTTACCGGTCCATTCGT 57.594 42.857 12.40 0.00 0.00 3.85
162 163 0.975135 TTTACCGGTCCATTCGTCCA 59.025 50.000 12.40 0.00 0.00 4.02
164 165 1.952102 TACCGGTCCATTCGTCCAGC 61.952 60.000 12.40 0.00 0.00 4.85
188 189 3.501458 GAGGCGCCCGGATGTAGAC 62.501 68.421 26.15 0.00 0.00 2.59
189 190 3.845259 GGCGCCCGGATGTAGACA 61.845 66.667 18.11 0.00 0.00 3.41
192 193 1.498865 GCGCCCGGATGTAGACATTG 61.499 60.000 0.73 0.00 36.57 2.82
193 194 1.498865 CGCCCGGATGTAGACATTGC 61.499 60.000 0.73 0.00 36.57 3.56
200 201 4.201851 CCGGATGTAGACATTGCAAGAAAG 60.202 45.833 4.94 0.00 36.57 2.62
202 203 5.122239 CGGATGTAGACATTGCAAGAAAGAA 59.878 40.000 4.94 0.00 36.57 2.52
209 210 6.501781 AGACATTGCAAGAAAGAAAGAACTG 58.498 36.000 4.94 0.00 0.00 3.16
218 219 3.297134 AAGAAAGAACTGCACCTGGAA 57.703 42.857 0.00 0.00 0.00 3.53
233 234 4.399303 CACCTGGAATTAACCATTCTGTCC 59.601 45.833 0.00 0.00 41.22 4.02
262 263 1.136721 CCACGTCGCGACTTTACTTTG 60.137 52.381 33.94 19.39 0.00 2.77
292 296 7.256399 ACTTTACCTAGATGGATGGATGGATA 58.744 38.462 0.00 0.00 39.71 2.59
293 297 7.908917 ACTTTACCTAGATGGATGGATGGATAT 59.091 37.037 0.00 0.00 39.71 1.63
294 298 9.439461 CTTTACCTAGATGGATGGATGGATATA 57.561 37.037 0.00 0.00 39.71 0.86
295 299 9.973880 TTTACCTAGATGGATGGATGGATATAT 57.026 33.333 0.00 0.00 39.71 0.86
336 340 2.758736 AAAAGCAAAAGCACCACACA 57.241 40.000 0.00 0.00 0.00 3.72
359 363 2.890474 GCACGTACCATCTGCCGG 60.890 66.667 0.00 0.00 0.00 6.13
360 364 2.889617 CACGTACCATCTGCCGGA 59.110 61.111 5.05 0.00 0.00 5.14
361 365 1.226974 CACGTACCATCTGCCGGAG 60.227 63.158 5.05 0.00 0.00 4.63
362 366 1.681327 ACGTACCATCTGCCGGAGT 60.681 57.895 5.05 0.00 0.00 3.85
363 367 1.226974 CGTACCATCTGCCGGAGTG 60.227 63.158 5.05 0.00 0.00 3.51
364 368 1.663379 CGTACCATCTGCCGGAGTGA 61.663 60.000 5.05 0.00 0.00 3.41
399 403 1.862008 GCGAGATCACTGACCGATGAC 60.862 57.143 0.00 0.00 0.00 3.06
430 434 2.476051 CACGTTGCGGTGAGATGC 59.524 61.111 0.00 0.00 40.38 3.91
431 435 2.742372 ACGTTGCGGTGAGATGCC 60.742 61.111 0.00 0.00 0.00 4.40
462 467 1.003118 AGTACATGTGATGTGGGCGTT 59.997 47.619 9.11 0.00 44.60 4.84
534 539 1.773391 ATGCATGGGAGGGAGGGAG 60.773 63.158 0.00 0.00 0.00 4.30
999 1013 1.153549 CTACGCCAGCCTCTCCAAC 60.154 63.158 0.00 0.00 0.00 3.77
1057 1087 2.233271 CTTGCTTGCTTCCTTCCTCAA 58.767 47.619 0.00 0.00 0.00 3.02
1065 1095 5.901413 TGCTTCCTTCCTCAAGATCATAT 57.099 39.130 0.00 0.00 0.00 1.78
1067 1097 4.928615 GCTTCCTTCCTCAAGATCATATCG 59.071 45.833 0.00 0.00 0.00 2.92
1075 1105 5.351740 TCCTCAAGATCATATCGCTACTACG 59.648 44.000 0.00 0.00 0.00 3.51
1085 1115 4.579454 ATCGCTACTACGCATTTCCTTA 57.421 40.909 0.00 0.00 0.00 2.69
1115 1145 5.707242 TCTTATTATCTACACCAGCTCCG 57.293 43.478 0.00 0.00 0.00 4.63
1125 1155 2.231964 ACACCAGCTCCGTTCGTAAATA 59.768 45.455 0.00 0.00 0.00 1.40
1127 1157 3.489785 CACCAGCTCCGTTCGTAAATATC 59.510 47.826 0.00 0.00 0.00 1.63
1138 1168 5.949787 CGTTCGTAAATATCAGACGTTTTGG 59.050 40.000 0.00 0.00 37.81 3.28
1145 1175 6.811253 AATATCAGACGTTTTGGCAGTTTA 57.189 33.333 0.00 0.00 0.00 2.01
1147 1177 4.966965 TCAGACGTTTTGGCAGTTTAAA 57.033 36.364 0.00 0.00 0.00 1.52
1149 1179 5.897050 TCAGACGTTTTGGCAGTTTAAATT 58.103 33.333 0.00 0.00 0.00 1.82
1150 1180 5.746245 TCAGACGTTTTGGCAGTTTAAATTG 59.254 36.000 6.35 6.35 0.00 2.32
1185 1215 6.465084 ACGTCTTATATTTAGGAATGGAGGC 58.535 40.000 0.00 0.00 0.00 4.70
1192 1222 2.447408 TAGGAATGGAGGCAGTACGA 57.553 50.000 0.00 0.00 0.00 3.43
1200 1230 1.067821 GGAGGCAGTACGATCTCTTGG 59.932 57.143 10.56 0.00 0.00 3.61
1221 1252 3.005472 GGAGCCACTGGTTTTCCTTTTAC 59.995 47.826 0.00 0.00 41.38 2.01
1237 1268 4.584743 CCTTTTACTTTGGGTTTCTCTGCT 59.415 41.667 0.00 0.00 0.00 4.24
1239 1270 5.767816 TTTACTTTGGGTTTCTCTGCTTC 57.232 39.130 0.00 0.00 0.00 3.86
1242 1273 0.250727 TTGGGTTTCTCTGCTTCGGG 60.251 55.000 0.00 0.00 0.00 5.14
1243 1274 1.375326 GGGTTTCTCTGCTTCGGGT 59.625 57.895 0.00 0.00 0.00 5.28
1245 1276 1.578206 GGTTTCTCTGCTTCGGGTGC 61.578 60.000 0.00 0.00 0.00 5.01
1246 1277 1.302511 TTTCTCTGCTTCGGGTGCC 60.303 57.895 0.00 0.00 0.00 5.01
1257 1288 4.195334 GGGTGCCGGATGGATGCT 62.195 66.667 5.05 0.00 37.49 3.79
1259 1290 3.589881 GTGCCGGATGGATGCTGC 61.590 66.667 5.05 0.00 37.49 5.25
1264 1295 1.450531 CCGGATGGATGCTGCTTTCC 61.451 60.000 13.20 13.20 37.49 3.13
1268 1299 3.521796 GGATGCTGCTTTCCCGCC 61.522 66.667 10.05 0.00 0.00 6.13
1280 1311 2.282462 CCCGCCCTTTCACTGCTT 60.282 61.111 0.00 0.00 0.00 3.91
1281 1312 1.002624 CCCGCCCTTTCACTGCTTA 60.003 57.895 0.00 0.00 0.00 3.09
1284 1315 1.305930 CGCCCTTTCACTGCTTACCC 61.306 60.000 0.00 0.00 0.00 3.69
1292 1323 4.911514 TTCACTGCTTACCCTTTGTTTC 57.088 40.909 0.00 0.00 0.00 2.78
1294 1325 2.616842 CACTGCTTACCCTTTGTTTCGT 59.383 45.455 0.00 0.00 0.00 3.85
1295 1326 3.066203 CACTGCTTACCCTTTGTTTCGTT 59.934 43.478 0.00 0.00 0.00 3.85
1296 1327 3.697542 ACTGCTTACCCTTTGTTTCGTTT 59.302 39.130 0.00 0.00 0.00 3.60
1297 1328 4.201980 ACTGCTTACCCTTTGTTTCGTTTC 60.202 41.667 0.00 0.00 0.00 2.78
1298 1329 3.949113 TGCTTACCCTTTGTTTCGTTTCT 59.051 39.130 0.00 0.00 0.00 2.52
1314 1345 3.653344 GTTTCTTTCCTTCATGTTGGCC 58.347 45.455 0.00 0.00 0.00 5.36
1352 1384 2.689785 CGAGCATTGCAGGGCGAAA 61.690 57.895 11.91 0.00 34.54 3.46
1380 1413 0.943359 GCGATCATGCCCTCTTCTCG 60.943 60.000 0.00 0.00 0.00 4.04
1384 1417 0.176680 TCATGCCCTCTTCTCGCTTC 59.823 55.000 0.00 0.00 0.00 3.86
1387 1420 2.888863 CCCTCTTCTCGCTTCGCT 59.111 61.111 0.00 0.00 0.00 4.93
1395 1428 1.139989 TCTCGCTTCGCTGTTTTCTG 58.860 50.000 0.00 0.00 0.00 3.02
1399 1466 2.867368 TCGCTTCGCTGTTTTCTGTTTA 59.133 40.909 0.00 0.00 0.00 2.01
1406 1473 5.212194 TCGCTGTTTTCTGTTTATTGCTTC 58.788 37.500 0.00 0.00 0.00 3.86
1417 1484 4.155449 GTTTATTGCTTCGTGATTTGCGA 58.845 39.130 0.00 0.00 36.51 5.10
1421 1488 2.887337 TGCTTCGTGATTTGCGATCTA 58.113 42.857 0.00 0.00 38.21 1.98
1448 1515 8.653984 TTAATCATGAGAAAACGTTTTCATCG 57.346 30.769 40.11 28.82 46.81 3.84
1474 1549 3.746492 CCCGGTTCTCTTCAGTTTAGTTG 59.254 47.826 0.00 0.00 0.00 3.16
1479 1554 6.033619 CGGTTCTCTTCAGTTTAGTTGATACG 59.966 42.308 0.00 0.00 0.00 3.06
1565 1644 1.303317 GGTTGGATGCACCGGAAGT 60.303 57.895 9.46 0.00 42.61 3.01
1633 1712 6.111382 AGGTATATACGCTCGCTTACTATCA 58.889 40.000 6.79 0.00 0.00 2.15
1654 1754 2.031682 AGTCGATGCACTCACTTTTTGC 60.032 45.455 0.00 0.00 36.76 3.68
1687 1787 3.972950 TCATGCTTCTCTCGTACTAGC 57.027 47.619 0.00 0.00 0.00 3.42
1688 1788 3.546724 TCATGCTTCTCTCGTACTAGCT 58.453 45.455 0.00 0.00 33.15 3.32
1694 1800 4.687483 GCTTCTCTCGTACTAGCTAGTAGG 59.313 50.000 33.25 33.25 42.78 3.18
1719 1825 4.693283 GACCATCTGATCCACGTAAATCA 58.307 43.478 10.57 10.57 0.00 2.57
1721 1827 5.684704 ACCATCTGATCCACGTAAATCATT 58.315 37.500 11.24 2.30 31.79 2.57
1727 1833 4.331443 TGATCCACGTAAATCATTTCCACG 59.669 41.667 7.70 4.24 38.52 4.94
1741 1847 6.037098 TCATTTCCACGTGGTTTTTAAGTTG 58.963 36.000 32.74 18.88 36.34 3.16
1749 1855 4.254492 GTGGTTTTTAAGTTGCACCCAAA 58.746 39.130 0.00 0.00 31.68 3.28
1750 1856 4.093703 GTGGTTTTTAAGTTGCACCCAAAC 59.906 41.667 0.00 0.00 31.68 2.93
1762 1868 5.957842 TGCACCCAAACTTTACTTAGATG 57.042 39.130 0.00 0.00 0.00 2.90
1763 1869 5.626142 TGCACCCAAACTTTACTTAGATGA 58.374 37.500 0.00 0.00 0.00 2.92
1764 1870 5.705441 TGCACCCAAACTTTACTTAGATGAG 59.295 40.000 0.00 0.00 0.00 2.90
1766 1872 6.238648 CACCCAAACTTTACTTAGATGAGGT 58.761 40.000 0.00 0.00 0.00 3.85
1767 1873 6.149474 CACCCAAACTTTACTTAGATGAGGTG 59.851 42.308 0.00 0.00 33.31 4.00
1768 1874 5.123979 CCCAAACTTTACTTAGATGAGGTGC 59.876 44.000 0.00 0.00 0.00 5.01
1769 1875 5.940470 CCAAACTTTACTTAGATGAGGTGCT 59.060 40.000 0.00 0.00 0.00 4.40
1770 1876 7.103641 CCAAACTTTACTTAGATGAGGTGCTA 58.896 38.462 0.00 0.00 0.00 3.49
1772 1878 8.660373 CAAACTTTACTTAGATGAGGTGCTAAG 58.340 37.037 0.00 0.00 45.63 2.18
1773 1879 6.342111 ACTTTACTTAGATGAGGTGCTAAGC 58.658 40.000 0.00 0.00 44.59 3.09
1775 1881 6.485830 TTACTTAGATGAGGTGCTAAGCAT 57.514 37.500 0.00 0.00 44.59 3.79
1777 1883 6.678568 ACTTAGATGAGGTGCTAAGCATAT 57.321 37.500 0.00 0.00 44.59 1.78
1779 1885 8.195165 ACTTAGATGAGGTGCTAAGCATATTA 57.805 34.615 0.00 0.00 44.59 0.98
1780 1886 8.651389 ACTTAGATGAGGTGCTAAGCATATTAA 58.349 33.333 0.00 0.00 44.59 1.40
1781 1887 9.494271 CTTAGATGAGGTGCTAAGCATATTAAA 57.506 33.333 0.00 0.00 41.91 1.52
1784 1890 9.664332 AGATGAGGTGCTAAGCATATTAAATAG 57.336 33.333 0.00 0.00 41.91 1.73
1788 1894 9.436957 GAGGTGCTAAGCATATTAAATAGCTTA 57.563 33.333 14.27 14.27 44.73 3.09
1796 1902 9.956720 AAGCATATTAAATAGCTTAGCAACTTG 57.043 29.630 7.07 0.00 44.73 3.16
1815 1921 8.112449 GCAACTTGCTTCATTTAATGATTTAGC 58.888 33.333 18.08 18.08 40.96 3.09
1816 1922 9.142515 CAACTTGCTTCATTTAATGATTTAGCA 57.857 29.630 21.68 21.68 44.44 3.49
1818 1924 9.143631 ACTTGCTTCATTTAATGATTTAGCAAC 57.856 29.630 27.60 5.41 46.95 4.17
1819 1925 9.362539 CTTGCTTCATTTAATGATTTAGCAACT 57.637 29.630 27.60 0.00 46.95 3.16
1833 1939 9.453572 TGATTTAGCAACTAAAGATCTTCATGT 57.546 29.630 8.78 5.36 38.97 3.21
1838 1944 8.218338 AGCAACTAAAGATCTTCATGTATTGG 57.782 34.615 8.78 0.00 0.00 3.16
1839 1945 7.831193 AGCAACTAAAGATCTTCATGTATTGGT 59.169 33.333 8.78 10.20 0.00 3.67
1840 1946 7.912250 GCAACTAAAGATCTTCATGTATTGGTG 59.088 37.037 8.78 3.27 0.00 4.17
1841 1947 8.400947 CAACTAAAGATCTTCATGTATTGGTGG 58.599 37.037 8.78 0.00 0.00 4.61
1843 1949 3.825328 AGATCTTCATGTATTGGTGGGC 58.175 45.455 0.00 0.00 0.00 5.36
1844 1950 3.461085 AGATCTTCATGTATTGGTGGGCT 59.539 43.478 0.00 0.00 0.00 5.19
1845 1951 3.737559 TCTTCATGTATTGGTGGGCTT 57.262 42.857 0.00 0.00 0.00 4.35
1846 1952 3.620488 TCTTCATGTATTGGTGGGCTTC 58.380 45.455 0.00 0.00 0.00 3.86
1848 1954 1.922447 TCATGTATTGGTGGGCTTCCT 59.078 47.619 0.00 0.00 0.00 3.36
1850 1956 2.507407 TGTATTGGTGGGCTTCCTTC 57.493 50.000 0.00 0.00 0.00 3.46
1851 1957 1.707989 TGTATTGGTGGGCTTCCTTCA 59.292 47.619 0.00 0.00 0.00 3.02
1852 1958 2.311542 TGTATTGGTGGGCTTCCTTCAT 59.688 45.455 0.00 0.00 0.00 2.57
1855 1961 3.534357 TTGGTGGGCTTCCTTCATTTA 57.466 42.857 0.00 0.00 0.00 1.40
1857 1963 3.850752 TGGTGGGCTTCCTTCATTTAAA 58.149 40.909 0.00 0.00 0.00 1.52
1860 1966 6.201591 TGGTGGGCTTCCTTCATTTAAATAT 58.798 36.000 0.00 0.00 0.00 1.28
1865 1971 7.552330 TGGGCTTCCTTCATTTAAATATTTTGC 59.448 33.333 5.91 0.76 0.00 3.68
1866 1972 7.012327 GGGCTTCCTTCATTTAAATATTTTGCC 59.988 37.037 5.91 8.78 0.00 4.52
1867 1973 7.770433 GGCTTCCTTCATTTAAATATTTTGCCT 59.230 33.333 5.91 0.00 0.00 4.75
1868 1974 9.816354 GCTTCCTTCATTTAAATATTTTGCCTA 57.184 29.630 5.91 0.00 0.00 3.93
1876 1982 9.019764 CATTTAAATATTTTGCCTAGGTTCACG 57.980 33.333 11.31 0.00 0.00 4.35
1877 1983 7.690952 TTAAATATTTTGCCTAGGTTCACGT 57.309 32.000 11.31 0.00 0.00 4.49
1878 1984 5.560966 AATATTTTGCCTAGGTTCACGTG 57.439 39.130 9.94 9.94 0.00 4.49
1879 1985 0.948678 TTTTGCCTAGGTTCACGTGC 59.051 50.000 11.67 0.00 0.00 5.34
1880 1986 0.107831 TTTGCCTAGGTTCACGTGCT 59.892 50.000 11.67 4.94 0.00 4.40
1881 1987 0.107831 TTGCCTAGGTTCACGTGCTT 59.892 50.000 11.67 0.00 0.00 3.91
1882 1988 0.970640 TGCCTAGGTTCACGTGCTTA 59.029 50.000 11.67 0.00 0.00 3.09
1883 1989 1.067142 TGCCTAGGTTCACGTGCTTAG 60.067 52.381 11.67 7.93 0.00 2.18
1884 1990 1.641577 CCTAGGTTCACGTGCTTAGC 58.358 55.000 11.67 8.36 0.00 3.09
1885 1991 1.067142 CCTAGGTTCACGTGCTTAGCA 60.067 52.381 11.67 1.39 35.60 3.49
1886 1992 2.418746 CCTAGGTTCACGTGCTTAGCAT 60.419 50.000 11.03 0.00 41.91 3.79
1887 1993 2.185004 AGGTTCACGTGCTTAGCATT 57.815 45.000 11.03 0.00 41.91 3.56
1888 1994 1.806542 AGGTTCACGTGCTTAGCATTG 59.193 47.619 11.03 11.13 41.91 2.82
1889 1995 1.535462 GGTTCACGTGCTTAGCATTGT 59.465 47.619 11.03 9.73 41.91 2.71
1890 1996 2.031157 GGTTCACGTGCTTAGCATTGTT 60.031 45.455 11.03 0.00 41.91 2.83
1891 1997 3.550030 GGTTCACGTGCTTAGCATTGTTT 60.550 43.478 11.03 0.00 41.91 2.83
1892 1998 3.536158 TCACGTGCTTAGCATTGTTTC 57.464 42.857 11.03 0.00 41.91 2.78
1893 1999 3.138304 TCACGTGCTTAGCATTGTTTCT 58.862 40.909 11.03 0.00 41.91 2.52
1894 2000 3.563808 TCACGTGCTTAGCATTGTTTCTT 59.436 39.130 11.03 0.00 41.91 2.52
1895 2001 3.908382 CACGTGCTTAGCATTGTTTCTTC 59.092 43.478 11.03 0.00 41.91 2.87
1896 2002 3.058224 ACGTGCTTAGCATTGTTTCTTCC 60.058 43.478 11.03 0.00 41.91 3.46
1897 2003 3.058293 CGTGCTTAGCATTGTTTCTTCCA 60.058 43.478 11.03 0.00 41.91 3.53
1898 2004 4.479619 GTGCTTAGCATTGTTTCTTCCAG 58.520 43.478 11.03 0.00 41.91 3.86
1899 2005 3.507233 TGCTTAGCATTGTTTCTTCCAGG 59.493 43.478 1.39 0.00 31.71 4.45
1900 2006 3.119352 GCTTAGCATTGTTTCTTCCAGGG 60.119 47.826 0.00 0.00 0.00 4.45
1901 2007 1.928868 AGCATTGTTTCTTCCAGGGG 58.071 50.000 0.00 0.00 0.00 4.79
1902 2008 1.147817 AGCATTGTTTCTTCCAGGGGT 59.852 47.619 0.00 0.00 0.00 4.95
1903 2009 1.546029 GCATTGTTTCTTCCAGGGGTC 59.454 52.381 0.00 0.00 0.00 4.46
1904 2010 2.875296 CATTGTTTCTTCCAGGGGTCA 58.125 47.619 0.00 0.00 0.00 4.02
1905 2011 2.358322 TTGTTTCTTCCAGGGGTCAC 57.642 50.000 0.00 0.00 0.00 3.67
1906 2012 0.476771 TGTTTCTTCCAGGGGTCACC 59.523 55.000 0.00 0.00 40.67 4.02
1907 2013 0.476771 GTTTCTTCCAGGGGTCACCA 59.523 55.000 0.00 0.00 43.89 4.17
1908 2014 1.075536 GTTTCTTCCAGGGGTCACCAT 59.924 52.381 0.00 0.00 43.89 3.55
1909 2015 2.307686 GTTTCTTCCAGGGGTCACCATA 59.692 50.000 0.00 0.00 43.89 2.74
1910 2016 1.580059 TCTTCCAGGGGTCACCATAC 58.420 55.000 0.00 0.00 43.89 2.39
1911 2017 1.080498 TCTTCCAGGGGTCACCATACT 59.920 52.381 0.00 0.00 43.89 2.12
1912 2018 1.486726 CTTCCAGGGGTCACCATACTC 59.513 57.143 0.00 0.00 43.89 2.59
1913 2019 0.415830 TCCAGGGGTCACCATACTCA 59.584 55.000 0.00 0.00 43.89 3.41
1914 2020 1.009552 TCCAGGGGTCACCATACTCAT 59.990 52.381 0.00 0.00 43.89 2.90
1915 2021 1.417890 CCAGGGGTCACCATACTCATC 59.582 57.143 0.00 0.00 43.89 2.92
1916 2022 2.402564 CAGGGGTCACCATACTCATCT 58.597 52.381 0.00 0.00 43.89 2.90
1917 2023 2.366916 CAGGGGTCACCATACTCATCTC 59.633 54.545 0.00 0.00 43.89 2.75
1918 2024 2.248686 AGGGGTCACCATACTCATCTCT 59.751 50.000 0.00 0.00 43.89 3.10
1919 2025 2.630580 GGGGTCACCATACTCATCTCTC 59.369 54.545 0.00 0.00 39.85 3.20
1920 2026 3.571590 GGGTCACCATACTCATCTCTCT 58.428 50.000 0.00 0.00 36.50 3.10
1921 2027 3.572255 GGGTCACCATACTCATCTCTCTC 59.428 52.174 0.00 0.00 36.50 3.20
1922 2028 4.469657 GGTCACCATACTCATCTCTCTCT 58.530 47.826 0.00 0.00 0.00 3.10
1923 2029 4.892934 GGTCACCATACTCATCTCTCTCTT 59.107 45.833 0.00 0.00 0.00 2.85
1924 2030 5.009610 GGTCACCATACTCATCTCTCTCTTC 59.990 48.000 0.00 0.00 0.00 2.87
1925 2031 5.827797 GTCACCATACTCATCTCTCTCTTCT 59.172 44.000 0.00 0.00 0.00 2.85
1926 2032 6.321181 GTCACCATACTCATCTCTCTCTTCTT 59.679 42.308 0.00 0.00 0.00 2.52
1927 2033 7.500892 GTCACCATACTCATCTCTCTCTTCTTA 59.499 40.741 0.00 0.00 0.00 2.10
1928 2034 8.055790 TCACCATACTCATCTCTCTCTTCTTAA 58.944 37.037 0.00 0.00 0.00 1.85
1929 2035 8.690884 CACCATACTCATCTCTCTCTTCTTAAA 58.309 37.037 0.00 0.00 0.00 1.52
1930 2036 9.432982 ACCATACTCATCTCTCTCTTCTTAAAT 57.567 33.333 0.00 0.00 0.00 1.40
1937 2043 9.539825 TCATCTCTCTCTTCTTAAATAACATGC 57.460 33.333 0.00 0.00 0.00 4.06
1938 2044 8.772705 CATCTCTCTCTTCTTAAATAACATGCC 58.227 37.037 0.00 0.00 0.00 4.40
1939 2045 7.851228 TCTCTCTCTTCTTAAATAACATGCCA 58.149 34.615 0.00 0.00 0.00 4.92
1940 2046 7.766278 TCTCTCTCTTCTTAAATAACATGCCAC 59.234 37.037 0.00 0.00 0.00 5.01
1941 2047 7.394016 TCTCTCTTCTTAAATAACATGCCACA 58.606 34.615 0.00 0.00 0.00 4.17
1942 2048 8.049117 TCTCTCTTCTTAAATAACATGCCACAT 58.951 33.333 0.00 0.00 0.00 3.21
1943 2049 9.330063 CTCTCTTCTTAAATAACATGCCACATA 57.670 33.333 0.00 0.00 0.00 2.29
1944 2050 9.679661 TCTCTTCTTAAATAACATGCCACATAA 57.320 29.630 0.00 0.00 0.00 1.90
1945 2051 9.941664 CTCTTCTTAAATAACATGCCACATAAG 57.058 33.333 0.00 0.00 0.00 1.73
1946 2052 9.679661 TCTTCTTAAATAACATGCCACATAAGA 57.320 29.630 0.00 0.00 0.00 2.10
1976 2082 4.712476 CCTACATGAAAGGCTTAGCATCT 58.288 43.478 6.53 0.00 0.00 2.90
1978 2084 3.960571 ACATGAAAGGCTTAGCATCTGT 58.039 40.909 6.53 2.10 0.00 3.41
1981 2087 6.830912 ACATGAAAGGCTTAGCATCTGTATA 58.169 36.000 6.53 0.00 0.00 1.47
1983 2089 7.443575 ACATGAAAGGCTTAGCATCTGTATAAG 59.556 37.037 6.53 0.00 0.00 1.73
1996 2102 5.233083 TCTGTATAAGATGGAGCATTGGG 57.767 43.478 0.00 0.00 0.00 4.12
1999 2105 3.803186 ATAAGATGGAGCATTGGGAGG 57.197 47.619 0.00 0.00 0.00 4.30
2000 2106 0.554792 AAGATGGAGCATTGGGAGGG 59.445 55.000 0.00 0.00 0.00 4.30
2001 2107 1.152368 GATGGAGCATTGGGAGGGG 59.848 63.158 0.00 0.00 0.00 4.79
2002 2108 2.990994 GATGGAGCATTGGGAGGGGC 62.991 65.000 0.00 0.00 0.00 5.80
2003 2109 4.529731 GGAGCATTGGGAGGGGCC 62.530 72.222 0.00 0.00 0.00 5.80
2030 2136 1.532794 TGGTCTTTTGGCCCGCATT 60.533 52.632 0.00 0.00 45.51 3.56
2045 2329 1.464023 CGCATTCAAAGGTGCACGTAG 60.464 52.381 13.22 8.89 41.32 3.51
2055 2339 1.677820 GGTGCACGTAGCCATTTACCT 60.678 52.381 11.45 0.00 44.83 3.08
2076 2360 2.035449 TCGGACCAAGAATATACGGCTG 59.965 50.000 0.00 0.00 0.00 4.85
2125 2418 3.839823 TTTTAGCGTACGTGTGTGTTC 57.160 42.857 17.90 0.00 0.00 3.18
2172 2478 2.278596 CGTCGTAGTGGCCCATCG 60.279 66.667 0.00 0.00 0.00 3.84
2320 2674 4.983215 TTCGTTAGTGTACAGTTGCATG 57.017 40.909 8.85 0.00 0.00 4.06
2400 2756 1.159285 CATCTTGCTCTTGGTCGCAA 58.841 50.000 0.00 0.00 43.21 4.85
2404 2760 0.250684 TTGCTCTTGGTCGCAATGGA 60.251 50.000 0.00 0.00 40.84 3.41
2412 2768 1.137404 GTCGCAATGGACATGGCAC 59.863 57.895 11.86 5.71 37.61 5.01
2454 2810 1.743958 CTCCTTTCCAGCTTGAGCATG 59.256 52.381 5.70 0.00 45.16 4.06
2594 2959 3.575630 CGTATGTATTCCTGGATCACGG 58.424 50.000 0.00 0.00 0.00 4.94
2595 2960 3.254903 CGTATGTATTCCTGGATCACGGA 59.745 47.826 0.00 0.00 0.00 4.69
2612 3210 4.080015 TCACGGATTTCCCATCTAACCATT 60.080 41.667 0.00 0.00 34.14 3.16
2724 3325 2.580783 TGGTCTATCCCCCAAAAGGAAG 59.419 50.000 0.00 0.00 36.85 3.46
2728 3332 2.238084 ATCCCCCAAAAGGAAGAAGC 57.762 50.000 0.00 0.00 36.85 3.86
2839 3443 4.147219 TGAGTACTACGATGATGATGCG 57.853 45.455 0.00 0.00 0.00 4.73
2962 3566 1.321074 ATGTCCCCGGAGAAGACGAC 61.321 60.000 0.73 0.00 33.13 4.34
2992 3596 4.740741 AGACTATGACGTCGATGATGAG 57.259 45.455 12.58 5.46 38.90 2.90
3067 3671 2.869801 CAATGGCAATGTTGATGATGGC 59.130 45.455 0.00 0.00 38.68 4.40
3107 3711 2.527951 CTTCCCCCAGCTTGAGTCCG 62.528 65.000 0.00 0.00 0.00 4.79
3112 3716 2.345244 CAGCTTGAGTCCGCCACT 59.655 61.111 0.00 0.00 38.45 4.00
3142 3746 4.148825 ATGGTCAGCGTCGAGGCC 62.149 66.667 25.27 11.35 0.00 5.19
3161 3765 1.471501 CCATCGCGGAGAAAGATGACA 60.472 52.381 6.13 0.00 43.06 3.58
3163 3767 2.672961 TCGCGGAGAAAGATGACATT 57.327 45.000 6.13 0.00 0.00 2.71
3193 3797 0.324368 AGGACGACCTCATGCTGGTA 60.324 55.000 0.00 0.00 44.13 3.25
3336 3940 0.942962 GAATCATGGCCAGAGAAGCG 59.057 55.000 13.05 0.00 0.00 4.68
3341 3945 0.036732 ATGGCCAGAGAAGCGAAACA 59.963 50.000 13.05 0.00 0.00 2.83
3409 4013 3.311110 ACGGAAGAGAAGGGCGCA 61.311 61.111 10.83 0.00 0.00 6.09
3465 4069 2.387510 AGAGGGAGGAAGGGAAAGTAGT 59.612 50.000 0.00 0.00 0.00 2.73
3496 4100 0.179004 ATGGCGGTCACAAAAGGACA 60.179 50.000 0.00 0.00 37.00 4.02
3527 4131 1.683319 GGGTGAAGGATGAGAAAGGCC 60.683 57.143 0.00 0.00 0.00 5.19
3528 4132 1.004745 GGTGAAGGATGAGAAAGGCCA 59.995 52.381 5.01 0.00 0.00 5.36
3559 4163 1.808531 GAGTGCCAGCCAATGCAACA 61.809 55.000 0.00 0.00 39.57 3.33
3585 4189 5.163561 CCAAGAGCAAGTTTCAAAAGGTACA 60.164 40.000 0.00 0.00 0.00 2.90
3596 4200 5.728351 TCAAAAGGTACACTTCTTGTTCG 57.272 39.130 0.00 0.00 38.85 3.95
3665 4269 7.769044 TGATCTTTGGCTGTAAATTACTCTACC 59.231 37.037 4.67 1.89 0.00 3.18
3668 4272 7.822822 TCTTTGGCTGTAAATTACTCTACCTTC 59.177 37.037 4.67 0.00 0.00 3.46
3689 4619 8.047310 ACCTTCTGTTAATTCCTAAACATCGAT 58.953 33.333 0.00 0.00 35.21 3.59
3690 4620 8.338259 CCTTCTGTTAATTCCTAAACATCGATG 58.662 37.037 23.68 23.68 35.21 3.84
3755 4687 9.893305 CATATGTATTACGTTCTGTATGACTGA 57.107 33.333 0.00 0.00 31.81 3.41
3813 4746 6.038714 GTCCATGGAAATATTTCTGTGTCTCC 59.961 42.308 23.85 9.36 37.35 3.71
3832 4765 7.121315 GTGTCTCCACTAGCTTTTTGGAAATAT 59.879 37.037 10.81 0.00 38.97 1.28
3884 4818 4.389077 CACTTTGAACCGATCCTAAGACAC 59.611 45.833 0.00 0.00 0.00 3.67
3889 4823 0.249073 CCGATCCTAAGACACAGGCG 60.249 60.000 0.00 0.00 32.82 5.52
3952 4886 7.939039 CACATCACAATAATACCATCCCTACTT 59.061 37.037 0.00 0.00 0.00 2.24
3954 4888 9.436957 CATCACAATAATACCATCCCTACTTAC 57.563 37.037 0.00 0.00 0.00 2.34
3956 4890 9.886337 TCACAATAATACCATCCCTACTTACTA 57.114 33.333 0.00 0.00 0.00 1.82
3989 4923 8.865590 ATACGTTGCACTAAGTTTTCAAATTT 57.134 26.923 0.00 0.00 0.00 1.82
4041 4997 9.699703 TTAATTGAACATTTTAAGCAGTTACCC 57.300 29.630 0.00 0.00 0.00 3.69
4043 4999 6.716934 TGAACATTTTAAGCAGTTACCCAA 57.283 33.333 0.00 0.00 0.00 4.12
4136 5137 8.557304 AATGTCAATCCATAAAAATCAGGGAT 57.443 30.769 0.00 0.00 38.18 3.85
4253 5254 3.181530 CCTCTGAGCACGTTACAATTTCG 60.182 47.826 0.00 0.00 0.00 3.46
4372 5471 4.613944 CAAAAGATCAAAGCAGCACTGAA 58.386 39.130 0.81 0.00 0.00 3.02
4407 5506 6.053632 TGATCAGAAGAGACCTTGCAATTA 57.946 37.500 0.00 0.00 31.62 1.40
4410 5509 6.305272 TCAGAAGAGACCTTGCAATTAGAT 57.695 37.500 0.00 0.00 31.62 1.98
4411 5510 6.111382 TCAGAAGAGACCTTGCAATTAGATG 58.889 40.000 0.00 0.00 31.62 2.90
4412 5511 6.070596 TCAGAAGAGACCTTGCAATTAGATGA 60.071 38.462 0.00 0.00 31.62 2.92
4413 5512 6.766944 CAGAAGAGACCTTGCAATTAGATGAT 59.233 38.462 0.00 0.00 31.62 2.45
4414 5513 6.991531 AGAAGAGACCTTGCAATTAGATGATC 59.008 38.462 0.00 0.00 31.62 2.92
4415 5514 6.497624 AGAGACCTTGCAATTAGATGATCT 57.502 37.500 0.00 0.00 0.00 2.75
4416 5515 7.609097 AGAGACCTTGCAATTAGATGATCTA 57.391 36.000 0.00 0.00 0.00 1.98
4417 5516 7.669427 AGAGACCTTGCAATTAGATGATCTAG 58.331 38.462 0.00 0.00 29.56 2.43
4418 5517 7.289782 AGAGACCTTGCAATTAGATGATCTAGT 59.710 37.037 0.00 0.00 29.56 2.57
4426 5525 6.295236 GCAATTAGATGATCTAGTGCTCCTCT 60.295 42.308 22.67 0.00 38.11 3.69
4443 5542 4.155709 TCCTCTATATCCCACTGCTTCAG 58.844 47.826 0.00 0.00 37.52 3.02
4518 5617 2.595750 TGGGAAACGTCCATTCCAAT 57.404 45.000 17.12 0.00 46.69 3.16
4531 5630 6.708054 CGTCCATTCCAATCTAGCTTCTAATT 59.292 38.462 0.00 0.00 0.00 1.40
4653 5753 7.065563 GTCTAATGCTATCTTTATGCATCCCAG 59.934 40.741 0.19 0.00 45.29 4.45
4959 6059 0.538977 ACCGACTCCGAAGAAGACCA 60.539 55.000 0.00 0.00 38.22 4.02
5132 6232 5.182190 GGCTTTTCTTTCTCTTTCTAGTGGG 59.818 44.000 0.00 0.00 0.00 4.61
5350 6688 0.036952 ATGGACACTTGACAGCGAGG 60.037 55.000 0.00 0.00 0.00 4.63
5493 6831 6.475504 TGGTACTGGAATTATAGATGCATGG 58.524 40.000 2.46 0.00 0.00 3.66
5495 6833 7.037370 TGGTACTGGAATTATAGATGCATGGAT 60.037 37.037 2.46 0.00 0.00 3.41
5496 6834 7.281774 GGTACTGGAATTATAGATGCATGGATG 59.718 40.741 2.46 0.00 0.00 3.51
5587 6932 8.256611 AGTGAGTGTGTATCATATGTGTTTTC 57.743 34.615 1.90 0.00 0.00 2.29
5775 7121 0.611618 TGCGATTGGTGCTTTGGGAT 60.612 50.000 0.00 0.00 0.00 3.85
5820 7166 0.107654 CAACAGTAGTAGGGCCTGCC 60.108 60.000 18.53 6.62 0.00 4.85
5821 7167 0.252742 AACAGTAGTAGGGCCTGCCT 60.253 55.000 18.53 14.41 36.10 4.75
5822 7168 0.978146 ACAGTAGTAGGGCCTGCCTG 60.978 60.000 18.53 19.86 36.10 4.85
5823 7169 1.383248 AGTAGTAGGGCCTGCCTGG 60.383 63.158 18.53 0.00 39.35 4.45
5851 7197 4.758674 TGCTTCCTCTTGAATGAACTCTTG 59.241 41.667 0.00 0.00 31.06 3.02
5874 7220 1.073177 GTGGATTGCTTGCATTGCAC 58.927 50.000 20.02 20.02 38.71 4.57
5935 7281 1.194218 TTCCAGATCATCTCGTGCCA 58.806 50.000 0.00 0.00 0.00 4.92
5937 7283 0.879400 CCAGATCATCTCGTGCCAGC 60.879 60.000 0.00 0.00 0.00 4.85
5975 7321 1.296056 GCCGCCAATGACAAGTACGT 61.296 55.000 0.00 0.00 0.00 3.57
6016 7362 1.574428 CACACTTACTTGGCCGTGC 59.426 57.895 0.00 0.00 0.00 5.34
6025 7371 0.449388 CTTGGCCGTGCTTTCTGATC 59.551 55.000 0.00 0.00 0.00 2.92
6031 7377 2.544685 CCGTGCTTTCTGATCGATCTT 58.455 47.619 25.02 0.00 0.00 2.40
6041 7387 4.189231 TCTGATCGATCTTGTGAGACGTA 58.811 43.478 25.02 0.49 33.99 3.57
6042 7388 4.034163 TCTGATCGATCTTGTGAGACGTAC 59.966 45.833 25.02 0.00 33.99 3.67
6043 7389 2.800694 TCGATCTTGTGAGACGTACG 57.199 50.000 15.01 15.01 33.99 3.67
6044 7390 2.071540 TCGATCTTGTGAGACGTACGT 58.928 47.619 23.04 23.04 33.99 3.57
6133 7535 8.773033 AAGGCCTCTTTGTGATCAATTATTAT 57.227 30.769 5.23 0.00 33.32 1.28
6134 7536 8.174733 AGGCCTCTTTGTGATCAATTATTATG 57.825 34.615 0.00 0.00 33.32 1.90
6141 7543 5.891198 TGTGATCAATTATTATGGGGGAGG 58.109 41.667 0.00 0.00 0.00 4.30
6143 7545 4.294702 TGATCAATTATTATGGGGGAGGGG 59.705 45.833 0.00 0.00 0.00 4.79
6144 7546 3.000360 TCAATTATTATGGGGGAGGGGG 59.000 50.000 0.00 0.00 0.00 5.40
6148 7550 3.916659 TATTATGGGGGAGGGGGCAGG 62.917 61.905 0.00 0.00 0.00 4.85
6195 7597 3.967467 AATCAGCCTCAATTCCCTCAT 57.033 42.857 0.00 0.00 0.00 2.90
6201 7603 4.221262 CAGCCTCAATTCCCTCATTTTTCA 59.779 41.667 0.00 0.00 0.00 2.69
6203 7605 5.486419 AGCCTCAATTCCCTCATTTTTCATT 59.514 36.000 0.00 0.00 0.00 2.57
6204 7606 5.583457 GCCTCAATTCCCTCATTTTTCATTG 59.417 40.000 0.00 0.00 0.00 2.82
6210 7729 6.931790 TTCCCTCATTTTTCATTGGATTCA 57.068 33.333 0.00 0.00 0.00 2.57
6216 7735 8.472413 CCTCATTTTTCATTGGATTCAGTGTAT 58.528 33.333 0.00 0.00 33.12 2.29
6286 7805 9.816787 TGGTCTAAAAATACCTTTTATCCAACT 57.183 29.630 0.00 0.00 38.71 3.16
6315 7834 2.915349 AGCCATCACTAATGCTCTGTG 58.085 47.619 0.00 0.00 33.71 3.66
6340 7859 9.923786 TGTATGCACGTATGTTTAAATTACATC 57.076 29.630 0.00 2.33 37.42 3.06
6443 7962 4.419522 ACATTGAACGACATAAGCCAAC 57.580 40.909 0.00 0.00 0.00 3.77
6446 7965 5.048083 ACATTGAACGACATAAGCCAACATT 60.048 36.000 0.00 0.00 0.00 2.71
6466 7985 7.295952 ACATTGAACGAATAATCTCACAGAC 57.704 36.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.316029 GGCCCATCACCGAACCTA 58.684 61.111 0.00 0.00 0.00 3.08
7 8 4.041762 TCAACCCGGCCCATCACC 62.042 66.667 0.00 0.00 0.00 4.02
8 9 2.750237 GTCAACCCGGCCCATCAC 60.750 66.667 0.00 0.00 0.00 3.06
9 10 2.611505 ATGTCAACCCGGCCCATCA 61.612 57.895 0.00 0.00 0.00 3.07
10 11 2.120909 CATGTCAACCCGGCCCATC 61.121 63.158 0.00 0.00 0.00 3.51
11 12 2.044053 CATGTCAACCCGGCCCAT 60.044 61.111 0.00 0.00 0.00 4.00
12 13 4.358841 CCATGTCAACCCGGCCCA 62.359 66.667 0.00 0.00 0.00 5.36
15 16 3.443045 CTGCCATGTCAACCCGGC 61.443 66.667 0.00 0.00 45.11 6.13
16 17 2.040544 GTCTGCCATGTCAACCCGG 61.041 63.158 0.00 0.00 0.00 5.73
17 18 2.390599 CGTCTGCCATGTCAACCCG 61.391 63.158 0.00 0.00 0.00 5.28
18 19 1.302511 ACGTCTGCCATGTCAACCC 60.303 57.895 0.00 0.00 0.00 4.11
19 20 1.868997 CACGTCTGCCATGTCAACC 59.131 57.895 0.00 0.00 0.00 3.77
20 21 1.207593 GCACGTCTGCCATGTCAAC 59.792 57.895 0.00 0.00 37.45 3.18
21 22 3.654201 GCACGTCTGCCATGTCAA 58.346 55.556 0.00 0.00 37.45 3.18
35 36 2.158871 TGGATATGAAACGGGTAGGCAC 60.159 50.000 0.00 0.00 0.00 5.01
36 37 2.120312 TGGATATGAAACGGGTAGGCA 58.880 47.619 0.00 0.00 0.00 4.75
37 38 2.490991 GTGGATATGAAACGGGTAGGC 58.509 52.381 0.00 0.00 0.00 3.93
38 39 2.224450 GGGTGGATATGAAACGGGTAGG 60.224 54.545 0.00 0.00 0.00 3.18
39 40 2.704065 AGGGTGGATATGAAACGGGTAG 59.296 50.000 0.00 0.00 0.00 3.18
40 41 2.766736 AGGGTGGATATGAAACGGGTA 58.233 47.619 0.00 0.00 0.00 3.69
41 42 1.591768 AGGGTGGATATGAAACGGGT 58.408 50.000 0.00 0.00 0.00 5.28
42 43 2.436542 TGTAGGGTGGATATGAAACGGG 59.563 50.000 0.00 0.00 0.00 5.28
43 44 3.830744 TGTAGGGTGGATATGAAACGG 57.169 47.619 0.00 0.00 0.00 4.44
44 45 5.588648 ACAAATGTAGGGTGGATATGAAACG 59.411 40.000 0.00 0.00 0.00 3.60
45 46 7.773690 AGTACAAATGTAGGGTGGATATGAAAC 59.226 37.037 0.00 0.00 0.00 2.78
46 47 7.773224 CAGTACAAATGTAGGGTGGATATGAAA 59.227 37.037 0.00 0.00 0.00 2.69
47 48 7.279615 CAGTACAAATGTAGGGTGGATATGAA 58.720 38.462 0.00 0.00 0.00 2.57
48 49 6.183361 CCAGTACAAATGTAGGGTGGATATGA 60.183 42.308 9.46 0.00 32.67 2.15
61 62 6.384015 TGGTCTCTCATATCCAGTACAAATGT 59.616 38.462 0.00 0.00 0.00 2.71
68 69 4.432980 TCGTGGTCTCTCATATCCAGTA 57.567 45.455 0.00 0.00 0.00 2.74
69 70 3.298686 TCGTGGTCTCTCATATCCAGT 57.701 47.619 0.00 0.00 0.00 4.00
79 80 2.457598 TCCAAGCTATTCGTGGTCTCT 58.542 47.619 1.39 0.00 43.63 3.10
80 81 2.961526 TCCAAGCTATTCGTGGTCTC 57.038 50.000 1.39 0.00 43.63 3.36
81 82 2.501723 ACATCCAAGCTATTCGTGGTCT 59.498 45.455 1.39 0.00 43.63 3.85
85 86 4.631377 TCTCAAACATCCAAGCTATTCGTG 59.369 41.667 0.00 0.00 0.00 4.35
86 87 4.631813 GTCTCAAACATCCAAGCTATTCGT 59.368 41.667 0.00 0.00 0.00 3.85
89 90 4.922206 TGGTCTCAAACATCCAAGCTATT 58.078 39.130 0.00 0.00 0.00 1.73
91 92 3.327757 ACTGGTCTCAAACATCCAAGCTA 59.672 43.478 0.00 0.00 0.00 3.32
93 94 2.508526 ACTGGTCTCAAACATCCAAGC 58.491 47.619 0.00 0.00 0.00 4.01
95 96 6.262273 GTCTTAAACTGGTCTCAAACATCCAA 59.738 38.462 0.00 0.00 0.00 3.53
96 97 5.763204 GTCTTAAACTGGTCTCAAACATCCA 59.237 40.000 0.00 0.00 0.00 3.41
98 99 5.614887 GCGTCTTAAACTGGTCTCAAACATC 60.615 44.000 0.00 0.00 0.00 3.06
108 109 3.440173 CCAATCATGCGTCTTAAACTGGT 59.560 43.478 0.00 0.00 0.00 4.00
112 113 4.963953 CGAATCCAATCATGCGTCTTAAAC 59.036 41.667 0.00 0.00 0.00 2.01
121 122 7.529880 AAAAAGAAATCGAATCCAATCATGC 57.470 32.000 0.00 0.00 0.00 4.06
124 125 7.247728 CGGTAAAAAGAAATCGAATCCAATCA 58.752 34.615 0.00 0.00 0.00 2.57
133 134 4.005487 TGGACCGGTAAAAAGAAATCGA 57.995 40.909 7.34 0.00 0.00 3.59
134 135 4.957759 ATGGACCGGTAAAAAGAAATCG 57.042 40.909 7.34 0.00 0.00 3.34
136 137 4.763279 ACGAATGGACCGGTAAAAAGAAAT 59.237 37.500 7.34 0.00 0.00 2.17
140 141 2.417586 GGACGAATGGACCGGTAAAAAG 59.582 50.000 7.34 0.00 0.00 2.27
141 142 2.224475 TGGACGAATGGACCGGTAAAAA 60.224 45.455 7.34 0.00 0.00 1.94
143 144 0.975135 TGGACGAATGGACCGGTAAA 59.025 50.000 7.34 0.00 0.00 2.01
144 145 0.533491 CTGGACGAATGGACCGGTAA 59.467 55.000 7.34 0.00 0.00 2.85
145 146 1.952102 GCTGGACGAATGGACCGGTA 61.952 60.000 7.34 0.00 33.13 4.02
146 147 2.978824 CTGGACGAATGGACCGGT 59.021 61.111 6.92 6.92 0.00 5.28
147 148 2.511600 GCTGGACGAATGGACCGG 60.512 66.667 0.00 0.00 0.00 5.28
148 149 2.511600 GGCTGGACGAATGGACCG 60.512 66.667 0.00 0.00 0.00 4.79
149 150 2.511600 CGGCTGGACGAATGGACC 60.512 66.667 0.00 0.00 35.47 4.46
150 151 0.953960 AAACGGCTGGACGAATGGAC 60.954 55.000 1.84 0.00 37.61 4.02
151 152 0.953471 CAAACGGCTGGACGAATGGA 60.953 55.000 1.84 0.00 37.61 3.41
152 153 0.953471 TCAAACGGCTGGACGAATGG 60.953 55.000 1.84 0.00 37.61 3.16
177 178 2.905075 TCTTGCAATGTCTACATCCGG 58.095 47.619 0.00 0.00 35.10 5.14
178 179 4.631377 TCTTTCTTGCAATGTCTACATCCG 59.369 41.667 0.00 0.00 35.10 4.18
180 181 7.810658 TCTTTCTTTCTTGCAATGTCTACATC 58.189 34.615 0.00 0.00 35.10 3.06
181 182 7.750229 TCTTTCTTTCTTGCAATGTCTACAT 57.250 32.000 0.00 0.00 38.41 2.29
188 189 5.045215 TGCAGTTCTTTCTTTCTTGCAATG 58.955 37.500 0.00 0.00 0.00 2.82
189 190 5.045872 GTGCAGTTCTTTCTTTCTTGCAAT 58.954 37.500 0.00 0.00 0.00 3.56
192 193 3.067320 AGGTGCAGTTCTTTCTTTCTTGC 59.933 43.478 0.00 0.00 0.00 4.01
193 194 4.498682 CCAGGTGCAGTTCTTTCTTTCTTG 60.499 45.833 0.00 0.00 0.00 3.02
200 201 5.461526 GTTAATTCCAGGTGCAGTTCTTTC 58.538 41.667 0.00 0.00 0.00 2.62
202 203 3.826729 GGTTAATTCCAGGTGCAGTTCTT 59.173 43.478 0.00 0.00 0.00 2.52
209 210 3.763897 ACAGAATGGTTAATTCCAGGTGC 59.236 43.478 0.00 0.00 45.10 5.01
218 219 2.676342 GCGAACGGACAGAATGGTTAAT 59.324 45.455 0.00 0.00 43.62 1.40
262 263 8.478877 CATCCATCCATCTAGGTAAAGTATACC 58.521 40.741 0.00 0.00 39.02 2.73
300 304 9.466497 TTTTGCTTTTTCTGTGGAGATATATCT 57.534 29.630 15.26 15.26 40.50 1.98
336 340 1.141019 AGATGGTACGTGCGCGATT 59.859 52.632 28.73 7.43 42.00 3.34
359 363 2.420022 GCTCTCACTCTCACTCTCACTC 59.580 54.545 0.00 0.00 0.00 3.51
360 364 2.436417 GCTCTCACTCTCACTCTCACT 58.564 52.381 0.00 0.00 0.00 3.41
361 365 1.130373 CGCTCTCACTCTCACTCTCAC 59.870 57.143 0.00 0.00 0.00 3.51
362 366 1.002544 TCGCTCTCACTCTCACTCTCA 59.997 52.381 0.00 0.00 0.00 3.27
363 367 1.665679 CTCGCTCTCACTCTCACTCTC 59.334 57.143 0.00 0.00 0.00 3.20
364 368 1.277842 TCTCGCTCTCACTCTCACTCT 59.722 52.381 0.00 0.00 0.00 3.24
430 434 1.337447 ACATGTACTTTGTCCGTCCGG 60.337 52.381 0.00 0.00 0.00 5.14
431 435 1.724623 CACATGTACTTTGTCCGTCCG 59.275 52.381 0.00 0.00 0.00 4.79
432 436 3.034721 TCACATGTACTTTGTCCGTCC 57.965 47.619 0.00 0.00 0.00 4.79
433 437 3.994392 ACATCACATGTACTTTGTCCGTC 59.006 43.478 0.00 0.00 42.78 4.79
434 438 3.745975 CACATCACATGTACTTTGTCCGT 59.254 43.478 0.00 0.00 42.70 4.69
462 467 2.180946 AGCCAGTACTCCATCCATGA 57.819 50.000 0.00 0.00 0.00 3.07
518 523 3.174265 CCTCCCTCCCTCCCATGC 61.174 72.222 0.00 0.00 0.00 4.06
987 1001 0.742281 CCGTCATGTTGGAGAGGCTG 60.742 60.000 0.00 0.00 0.00 4.85
1057 1087 5.568685 AATGCGTAGTAGCGATATGATCT 57.431 39.130 0.00 0.00 40.67 2.75
1065 1095 2.953466 AAGGAAATGCGTAGTAGCGA 57.047 45.000 0.00 0.00 40.67 4.93
1067 1097 9.946165 AAAAATAATAAGGAAATGCGTAGTAGC 57.054 29.630 0.00 0.00 37.71 3.58
1109 1139 4.608951 GTCTGATATTTACGAACGGAGCT 58.391 43.478 0.00 0.00 0.00 4.09
1115 1145 5.731263 GCCAAAACGTCTGATATTTACGAAC 59.269 40.000 11.03 0.00 39.80 3.95
1125 1155 5.508200 TTTAAACTGCCAAAACGTCTGAT 57.492 34.783 0.00 0.00 0.00 2.90
1127 1157 5.746245 TCAATTTAAACTGCCAAAACGTCTG 59.254 36.000 0.00 0.00 0.00 3.51
1145 1175 2.693074 AGACGTTTGGGCAGTTCAATTT 59.307 40.909 0.00 0.00 0.00 1.82
1147 1177 1.981256 AGACGTTTGGGCAGTTCAAT 58.019 45.000 0.00 0.00 0.00 2.57
1149 1179 2.623878 TAAGACGTTTGGGCAGTTCA 57.376 45.000 0.00 0.00 0.00 3.18
1150 1180 5.813080 AATATAAGACGTTTGGGCAGTTC 57.187 39.130 0.00 0.00 0.00 3.01
1185 1215 1.751351 TGGCTCCAAGAGATCGTACTG 59.249 52.381 0.00 0.00 0.00 2.74
1192 1222 1.366319 AACCAGTGGCTCCAAGAGAT 58.634 50.000 9.78 0.00 0.00 2.75
1200 1230 3.889538 AGTAAAAGGAAAACCAGTGGCTC 59.110 43.478 9.78 3.38 0.00 4.70
1221 1252 1.537202 CCGAAGCAGAGAAACCCAAAG 59.463 52.381 0.00 0.00 0.00 2.77
1242 1273 3.589881 GCAGCATCCATCCGGCAC 61.590 66.667 0.00 0.00 0.00 5.01
1243 1274 2.842188 AAAGCAGCATCCATCCGGCA 62.842 55.000 0.00 0.00 0.00 5.69
1245 1276 1.450531 GGAAAGCAGCATCCATCCGG 61.451 60.000 11.44 0.00 35.71 5.14
1246 1277 1.450531 GGGAAAGCAGCATCCATCCG 61.451 60.000 16.70 0.00 37.46 4.18
1247 1278 1.450531 CGGGAAAGCAGCATCCATCC 61.451 60.000 16.70 6.52 37.46 3.51
1248 1279 2.028130 CGGGAAAGCAGCATCCATC 58.972 57.895 16.70 2.57 37.46 3.51
1249 1280 2.123428 GCGGGAAAGCAGCATCCAT 61.123 57.895 16.70 0.00 37.46 3.41
1250 1281 2.751436 GCGGGAAAGCAGCATCCA 60.751 61.111 16.70 0.00 37.46 3.41
1251 1282 3.521796 GGCGGGAAAGCAGCATCC 61.522 66.667 8.44 8.44 39.27 3.51
1252 1283 3.521796 GGGCGGGAAAGCAGCATC 61.522 66.667 0.00 0.00 39.27 3.91
1253 1284 3.590466 AAGGGCGGGAAAGCAGCAT 62.590 57.895 0.00 0.00 39.27 3.79
1254 1285 3.808218 AAAGGGCGGGAAAGCAGCA 62.808 57.895 0.00 0.00 39.27 4.41
1255 1286 2.991540 AAAGGGCGGGAAAGCAGC 60.992 61.111 0.00 0.00 39.27 5.25
1256 1287 1.603455 TGAAAGGGCGGGAAAGCAG 60.603 57.895 0.00 0.00 39.27 4.24
1257 1288 1.901464 GTGAAAGGGCGGGAAAGCA 60.901 57.895 0.00 0.00 39.27 3.91
1259 1290 1.866853 GCAGTGAAAGGGCGGGAAAG 61.867 60.000 0.00 0.00 0.00 2.62
1264 1295 1.305930 GGTAAGCAGTGAAAGGGCGG 61.306 60.000 0.00 0.00 0.00 6.13
1268 1299 3.222603 ACAAAGGGTAAGCAGTGAAAGG 58.777 45.455 0.00 0.00 0.00 3.11
1280 1311 5.195185 AGGAAAGAAACGAAACAAAGGGTA 58.805 37.500 0.00 0.00 0.00 3.69
1281 1312 4.021229 AGGAAAGAAACGAAACAAAGGGT 58.979 39.130 0.00 0.00 0.00 4.34
1284 1315 6.751888 ACATGAAGGAAAGAAACGAAACAAAG 59.248 34.615 0.00 0.00 0.00 2.77
1292 1323 3.308530 GCCAACATGAAGGAAAGAAACG 58.691 45.455 0.00 0.00 0.00 3.60
1294 1325 2.295909 CGGCCAACATGAAGGAAAGAAA 59.704 45.455 2.24 0.00 0.00 2.52
1295 1326 1.885887 CGGCCAACATGAAGGAAAGAA 59.114 47.619 2.24 0.00 0.00 2.52
1296 1327 1.533625 CGGCCAACATGAAGGAAAGA 58.466 50.000 2.24 0.00 0.00 2.52
1297 1328 0.109132 GCGGCCAACATGAAGGAAAG 60.109 55.000 2.24 0.00 0.00 2.62
1298 1329 1.531739 GGCGGCCAACATGAAGGAAA 61.532 55.000 15.62 0.00 0.00 3.13
1323 1354 2.813172 TGCAATGCTCGAGATGAAAACA 59.187 40.909 18.75 2.46 0.00 2.83
1329 1360 1.783031 GCCCTGCAATGCTCGAGATG 61.783 60.000 18.75 12.50 0.00 2.90
1352 1384 2.552819 GCATGATCGCTGCATGGCT 61.553 57.895 13.53 0.00 42.53 4.75
1362 1394 0.943359 GCGAGAAGAGGGCATGATCG 60.943 60.000 0.00 0.00 0.00 3.69
1384 1417 4.087085 CGAAGCAATAAACAGAAAACAGCG 59.913 41.667 0.00 0.00 0.00 5.18
1387 1420 6.125327 TCACGAAGCAATAAACAGAAAACA 57.875 33.333 0.00 0.00 0.00 2.83
1395 1428 4.155449 TCGCAAATCACGAAGCAATAAAC 58.845 39.130 0.00 0.00 36.44 2.01
1399 1466 2.679837 AGATCGCAAATCACGAAGCAAT 59.320 40.909 0.00 0.00 43.71 3.56
1406 1473 8.223100 TCATGATTAATTAGATCGCAAATCACG 58.777 33.333 11.52 6.60 36.49 4.35
1448 1515 1.219393 CTGAAGAGAACCGGGCCTC 59.781 63.158 6.32 11.94 0.00 4.70
1474 1549 3.876914 TGGATGAAACTGCCATTCGTATC 59.123 43.478 0.00 0.00 0.00 2.24
1479 1554 3.698040 ACTGATGGATGAAACTGCCATTC 59.302 43.478 0.00 0.00 42.22 2.67
1565 1644 8.206876 TTGAAGACGTCATTATTGCTTCGCAA 62.207 38.462 19.50 3.55 43.88 4.85
1579 1658 4.328983 GTGTTGAACTCTTTGAAGACGTCA 59.671 41.667 19.50 0.00 0.00 4.35
1622 1701 2.721603 GTGCATCGACTGATAGTAAGCG 59.278 50.000 0.00 0.00 32.18 4.68
1633 1712 2.031682 GCAAAAAGTGAGTGCATCGACT 60.032 45.455 0.00 0.00 38.19 4.18
1654 1754 7.306690 CGAGAGAAGCATGAAAAGATCAGTATG 60.307 40.741 0.00 0.00 42.53 2.39
1687 1787 1.982660 TCAGATGGTCGCCCTACTAG 58.017 55.000 0.00 0.00 0.00 2.57
1688 1788 2.515854 GATCAGATGGTCGCCCTACTA 58.484 52.381 0.00 0.00 0.00 1.82
1694 1800 1.592669 CGTGGATCAGATGGTCGCC 60.593 63.158 0.00 0.00 0.00 5.54
1719 1825 4.806775 GCAACTTAAAAACCACGTGGAAAT 59.193 37.500 40.21 22.29 38.94 2.17
1721 1827 3.192844 TGCAACTTAAAAACCACGTGGAA 59.807 39.130 40.21 22.09 38.94 3.53
1727 1833 3.528597 TGGGTGCAACTTAAAAACCAC 57.471 42.857 0.00 0.00 36.74 4.16
1741 1847 5.123979 CCTCATCTAAGTAAAGTTTGGGTGC 59.876 44.000 0.00 0.00 0.00 5.01
1749 1855 6.070767 TGCTTAGCACCTCATCTAAGTAAAGT 60.071 38.462 1.39 0.00 42.15 2.66
1750 1856 6.341316 TGCTTAGCACCTCATCTAAGTAAAG 58.659 40.000 1.39 0.00 42.15 1.85
1762 1868 7.913674 AGCTATTTAATATGCTTAGCACCTC 57.086 36.000 9.82 0.00 43.04 3.85
1770 1876 9.956720 CAAGTTGCTAAGCTATTTAATATGCTT 57.043 29.630 18.23 18.23 45.94 3.91
1772 1878 8.220618 GCAAGTTGCTAAGCTATTTAATATGC 57.779 34.615 20.71 0.00 40.96 3.14
1807 1913 9.453572 ACATGAAGATCTTTAGTTGCTAAATCA 57.546 29.630 9.87 0.00 35.72 2.57
1812 1918 9.330063 CCAATACATGAAGATCTTTAGTTGCTA 57.670 33.333 9.87 0.00 0.00 3.49
1813 1919 7.831193 ACCAATACATGAAGATCTTTAGTTGCT 59.169 33.333 9.87 0.00 0.00 3.91
1814 1920 7.912250 CACCAATACATGAAGATCTTTAGTTGC 59.088 37.037 9.87 0.00 0.00 4.17
1815 1921 8.400947 CCACCAATACATGAAGATCTTTAGTTG 58.599 37.037 9.87 4.44 0.00 3.16
1816 1922 7.557719 CCCACCAATACATGAAGATCTTTAGTT 59.442 37.037 9.87 0.00 0.00 2.24
1817 1923 7.056635 CCCACCAATACATGAAGATCTTTAGT 58.943 38.462 9.87 10.87 0.00 2.24
1818 1924 6.016777 GCCCACCAATACATGAAGATCTTTAG 60.017 42.308 9.87 5.39 0.00 1.85
1819 1925 5.827797 GCCCACCAATACATGAAGATCTTTA 59.172 40.000 9.87 5.81 0.00 1.85
1820 1926 4.646492 GCCCACCAATACATGAAGATCTTT 59.354 41.667 9.87 0.00 0.00 2.52
1821 1927 4.079558 AGCCCACCAATACATGAAGATCTT 60.080 41.667 7.95 7.95 0.00 2.40
1822 1928 3.461085 AGCCCACCAATACATGAAGATCT 59.539 43.478 0.00 0.00 0.00 2.75
1823 1929 3.825328 AGCCCACCAATACATGAAGATC 58.175 45.455 0.00 0.00 0.00 2.75
1824 1930 3.959495 AGCCCACCAATACATGAAGAT 57.041 42.857 0.00 0.00 0.00 2.40
1825 1931 3.620488 GAAGCCCACCAATACATGAAGA 58.380 45.455 0.00 0.00 0.00 2.87
1827 1933 2.311542 AGGAAGCCCACCAATACATGAA 59.688 45.455 0.00 0.00 33.88 2.57
1829 1935 2.442236 AGGAAGCCCACCAATACATG 57.558 50.000 0.00 0.00 33.88 3.21
1830 1936 2.311542 TGAAGGAAGCCCACCAATACAT 59.688 45.455 0.00 0.00 33.88 2.29
1833 1939 3.756082 AATGAAGGAAGCCCACCAATA 57.244 42.857 0.00 0.00 33.88 1.90
1835 1941 2.397044 AAATGAAGGAAGCCCACCAA 57.603 45.000 0.00 0.00 33.88 3.67
1837 1943 6.731292 ATATTTAAATGAAGGAAGCCCACC 57.269 37.500 11.05 0.00 33.88 4.61
1838 1944 8.882736 CAAAATATTTAAATGAAGGAAGCCCAC 58.117 33.333 11.05 0.00 33.88 4.61
1839 1945 7.552330 GCAAAATATTTAAATGAAGGAAGCCCA 59.448 33.333 11.05 0.00 33.88 5.36
1840 1946 7.012327 GGCAAAATATTTAAATGAAGGAAGCCC 59.988 37.037 11.05 0.00 0.00 5.19
1841 1947 7.770433 AGGCAAAATATTTAAATGAAGGAAGCC 59.230 33.333 11.05 13.66 0.00 4.35
1845 1951 9.487442 ACCTAGGCAAAATATTTAAATGAAGGA 57.513 29.630 9.30 0.00 0.00 3.36
1850 1956 9.019764 CGTGAACCTAGGCAAAATATTTAAATG 57.980 33.333 9.30 0.00 0.00 2.32
1851 1957 8.745590 ACGTGAACCTAGGCAAAATATTTAAAT 58.254 29.630 9.30 5.89 0.00 1.40
1852 1958 8.024285 CACGTGAACCTAGGCAAAATATTTAAA 58.976 33.333 10.90 0.00 0.00 1.52
1855 1961 5.621329 GCACGTGAACCTAGGCAAAATATTT 60.621 40.000 22.23 0.00 0.00 1.40
1857 1963 3.377172 GCACGTGAACCTAGGCAAAATAT 59.623 43.478 22.23 0.00 0.00 1.28
1860 1966 0.948678 GCACGTGAACCTAGGCAAAA 59.051 50.000 22.23 0.00 0.00 2.44
1865 1971 1.067142 TGCTAAGCACGTGAACCTAGG 60.067 52.381 22.23 7.41 31.71 3.02
1866 1972 2.363788 TGCTAAGCACGTGAACCTAG 57.636 50.000 22.23 13.51 31.71 3.02
1867 1973 3.000041 CAATGCTAAGCACGTGAACCTA 59.000 45.455 22.23 3.01 43.04 3.08
1868 1974 1.806542 CAATGCTAAGCACGTGAACCT 59.193 47.619 22.23 3.67 43.04 3.50
1869 1975 1.535462 ACAATGCTAAGCACGTGAACC 59.465 47.619 22.23 0.78 43.04 3.62
1870 1976 2.969443 ACAATGCTAAGCACGTGAAC 57.031 45.000 22.23 1.65 43.04 3.18
1872 1978 3.138304 AGAAACAATGCTAAGCACGTGA 58.862 40.909 22.23 0.00 43.04 4.35
1873 1979 3.542712 AGAAACAATGCTAAGCACGTG 57.457 42.857 12.28 12.28 43.04 4.49
1874 1980 3.058224 GGAAGAAACAATGCTAAGCACGT 60.058 43.478 0.00 0.00 43.04 4.49
1875 1981 3.058293 TGGAAGAAACAATGCTAAGCACG 60.058 43.478 0.00 0.00 43.04 5.34
1876 1982 4.479619 CTGGAAGAAACAATGCTAAGCAC 58.520 43.478 0.00 0.00 37.55 4.40
1877 1983 3.507233 CCTGGAAGAAACAATGCTAAGCA 59.493 43.478 0.00 0.00 38.95 3.91
1878 1984 3.119352 CCCTGGAAGAAACAATGCTAAGC 60.119 47.826 0.00 0.00 34.07 3.09
1879 1985 3.445096 CCCCTGGAAGAAACAATGCTAAG 59.555 47.826 0.00 0.00 34.07 2.18
1880 1986 3.181423 ACCCCTGGAAGAAACAATGCTAA 60.181 43.478 0.00 0.00 34.07 3.09
1881 1987 2.378547 ACCCCTGGAAGAAACAATGCTA 59.621 45.455 0.00 0.00 34.07 3.49
1882 1988 1.147817 ACCCCTGGAAGAAACAATGCT 59.852 47.619 0.00 0.00 34.07 3.79
1883 1989 1.546029 GACCCCTGGAAGAAACAATGC 59.454 52.381 0.00 0.00 34.07 3.56
1884 1990 2.558359 GTGACCCCTGGAAGAAACAATG 59.442 50.000 0.00 0.00 34.07 2.82
1885 1991 2.490902 GGTGACCCCTGGAAGAAACAAT 60.491 50.000 0.00 0.00 34.07 2.71
1886 1992 1.133606 GGTGACCCCTGGAAGAAACAA 60.134 52.381 0.00 0.00 34.07 2.83
1887 1993 0.476771 GGTGACCCCTGGAAGAAACA 59.523 55.000 0.00 0.00 34.07 2.83
1888 1994 0.476771 TGGTGACCCCTGGAAGAAAC 59.523 55.000 0.00 0.00 34.07 2.78
1889 1995 1.455822 ATGGTGACCCCTGGAAGAAA 58.544 50.000 0.00 0.00 34.07 2.52
1890 1996 1.913419 GTATGGTGACCCCTGGAAGAA 59.087 52.381 0.00 0.00 34.07 2.52
1891 1997 1.080498 AGTATGGTGACCCCTGGAAGA 59.920 52.381 0.00 0.00 34.07 2.87
1892 1998 1.486726 GAGTATGGTGACCCCTGGAAG 59.513 57.143 0.00 0.00 0.00 3.46
1893 1999 1.203376 TGAGTATGGTGACCCCTGGAA 60.203 52.381 0.00 0.00 0.00 3.53
1894 2000 0.415830 TGAGTATGGTGACCCCTGGA 59.584 55.000 0.00 0.00 0.00 3.86
1895 2001 1.417890 GATGAGTATGGTGACCCCTGG 59.582 57.143 0.00 0.00 0.00 4.45
1896 2002 2.366916 GAGATGAGTATGGTGACCCCTG 59.633 54.545 0.00 0.00 0.00 4.45
1897 2003 2.248686 AGAGATGAGTATGGTGACCCCT 59.751 50.000 0.00 0.00 0.00 4.79
1898 2004 2.630580 GAGAGATGAGTATGGTGACCCC 59.369 54.545 0.00 0.00 0.00 4.95
1899 2005 3.571590 AGAGAGATGAGTATGGTGACCC 58.428 50.000 0.00 0.00 0.00 4.46
1900 2006 4.469657 AGAGAGAGATGAGTATGGTGACC 58.530 47.826 0.00 0.00 0.00 4.02
1901 2007 5.827797 AGAAGAGAGAGATGAGTATGGTGAC 59.172 44.000 0.00 0.00 0.00 3.67
1902 2008 6.012337 AGAAGAGAGAGATGAGTATGGTGA 57.988 41.667 0.00 0.00 0.00 4.02
1903 2009 6.713762 AAGAAGAGAGAGATGAGTATGGTG 57.286 41.667 0.00 0.00 0.00 4.17
1904 2010 8.830915 TTTAAGAAGAGAGAGATGAGTATGGT 57.169 34.615 0.00 0.00 0.00 3.55
1911 2017 9.539825 GCATGTTATTTAAGAAGAGAGAGATGA 57.460 33.333 0.00 0.00 0.00 2.92
1912 2018 8.772705 GGCATGTTATTTAAGAAGAGAGAGATG 58.227 37.037 0.00 0.00 0.00 2.90
1913 2019 8.489489 TGGCATGTTATTTAAGAAGAGAGAGAT 58.511 33.333 0.00 0.00 0.00 2.75
1914 2020 7.766278 GTGGCATGTTATTTAAGAAGAGAGAGA 59.234 37.037 0.00 0.00 0.00 3.10
1915 2021 7.550551 TGTGGCATGTTATTTAAGAAGAGAGAG 59.449 37.037 0.00 0.00 0.00 3.20
1916 2022 7.394016 TGTGGCATGTTATTTAAGAAGAGAGA 58.606 34.615 0.00 0.00 0.00 3.10
1917 2023 7.615582 TGTGGCATGTTATTTAAGAAGAGAG 57.384 36.000 0.00 0.00 0.00 3.20
1918 2024 9.679661 TTATGTGGCATGTTATTTAAGAAGAGA 57.320 29.630 0.00 0.00 0.00 3.10
1919 2025 9.941664 CTTATGTGGCATGTTATTTAAGAAGAG 57.058 33.333 0.00 0.00 0.00 2.85
1920 2026 9.679661 TCTTATGTGGCATGTTATTTAAGAAGA 57.320 29.630 0.00 0.00 0.00 2.87
1954 2060 4.514441 CAGATGCTAAGCCTTTCATGTAGG 59.486 45.833 10.97 10.97 35.80 3.18
1955 2061 5.121811 ACAGATGCTAAGCCTTTCATGTAG 58.878 41.667 0.00 0.00 0.00 2.74
1956 2062 5.102953 ACAGATGCTAAGCCTTTCATGTA 57.897 39.130 0.00 0.00 0.00 2.29
1957 2063 3.960571 ACAGATGCTAAGCCTTTCATGT 58.039 40.909 0.00 0.00 0.00 3.21
1958 2064 7.658982 TCTTATACAGATGCTAAGCCTTTCATG 59.341 37.037 0.00 0.00 0.00 3.07
1973 2079 5.549228 TCCCAATGCTCCATCTTATACAGAT 59.451 40.000 0.00 0.00 43.80 2.90
1975 2081 5.233083 TCCCAATGCTCCATCTTATACAG 57.767 43.478 0.00 0.00 0.00 2.74
1976 2082 4.042062 CCTCCCAATGCTCCATCTTATACA 59.958 45.833 0.00 0.00 0.00 2.29
1978 2084 3.588842 CCCTCCCAATGCTCCATCTTATA 59.411 47.826 0.00 0.00 0.00 0.98
1981 2087 0.554792 CCCTCCCAATGCTCCATCTT 59.445 55.000 0.00 0.00 0.00 2.40
1983 2089 1.152368 CCCCTCCCAATGCTCCATC 59.848 63.158 0.00 0.00 0.00 3.51
1987 2093 1.645402 TAAGGCCCCTCCCAATGCTC 61.645 60.000 0.00 0.00 34.51 4.26
1988 2094 1.001140 ATAAGGCCCCTCCCAATGCT 61.001 55.000 0.00 0.00 34.51 3.79
1989 2095 0.777446 TATAAGGCCCCTCCCAATGC 59.223 55.000 0.00 0.00 34.51 3.56
1990 2096 3.852578 AGTATATAAGGCCCCTCCCAATG 59.147 47.826 0.00 0.00 34.51 2.82
1991 2097 3.852578 CAGTATATAAGGCCCCTCCCAAT 59.147 47.826 0.00 0.00 34.51 3.16
1992 2098 3.256704 CAGTATATAAGGCCCCTCCCAA 58.743 50.000 0.00 0.00 34.51 4.12
1993 2099 2.496523 CCAGTATATAAGGCCCCTCCCA 60.497 54.545 0.00 0.00 34.51 4.37
1994 2100 2.197465 CCAGTATATAAGGCCCCTCCC 58.803 57.143 0.00 0.00 34.51 4.30
1995 2101 2.838813 GACCAGTATATAAGGCCCCTCC 59.161 54.545 0.00 0.00 0.00 4.30
1996 2102 3.792515 AGACCAGTATATAAGGCCCCTC 58.207 50.000 0.00 0.00 0.00 4.30
1999 2105 5.070685 CCAAAAGACCAGTATATAAGGCCC 58.929 45.833 0.00 0.00 0.00 5.80
2000 2106 4.519350 GCCAAAAGACCAGTATATAAGGCC 59.481 45.833 0.00 0.00 0.00 5.19
2001 2107 4.519350 GGCCAAAAGACCAGTATATAAGGC 59.481 45.833 0.00 0.00 36.57 4.35
2002 2108 5.070685 GGGCCAAAAGACCAGTATATAAGG 58.929 45.833 4.39 1.82 46.95 2.69
2030 2136 0.036164 ATGGCTACGTGCACCTTTGA 59.964 50.000 12.15 0.00 45.15 2.69
2045 2329 1.065709 TCTTGGTCCGAGGTAAATGGC 60.066 52.381 6.27 0.00 0.00 4.40
2055 2339 2.035449 CAGCCGTATATTCTTGGTCCGA 59.965 50.000 0.00 0.00 0.00 4.55
2076 2360 1.412710 TGACGCTTGGGTCTCATATCC 59.587 52.381 16.63 0.00 37.81 2.59
2125 2418 2.019984 GACTATTGCCCAGCTTTCCAG 58.980 52.381 0.00 0.00 0.00 3.86
2320 2674 8.612619 CATAATATATACTGTTCAAATCCCGGC 58.387 37.037 0.00 0.00 0.00 6.13
2356 2712 4.406648 AATCAACGTGCATAGATCTCCA 57.593 40.909 0.00 0.00 0.00 3.86
2360 2716 3.065233 TGGCAAATCAACGTGCATAGATC 59.935 43.478 0.00 0.00 42.74 2.75
2400 2756 2.045045 CCGGTGTGCCATGTCCAT 60.045 61.111 0.00 0.00 34.09 3.41
2404 2760 1.916273 TAGGTCCGGTGTGCCATGT 60.916 57.895 0.00 0.00 34.09 3.21
2412 2768 1.019278 GCATGTGTGTAGGTCCGGTG 61.019 60.000 0.00 0.00 0.00 4.94
2416 2772 0.324943 AGTGGCATGTGTGTAGGTCC 59.675 55.000 0.00 0.00 0.00 4.46
2418 2774 0.324943 GGAGTGGCATGTGTGTAGGT 59.675 55.000 0.00 0.00 0.00 3.08
2594 2959 7.093771 ACAACTTCAATGGTTAGATGGGAAATC 60.094 37.037 0.00 0.00 0.00 2.17
2595 2960 6.725834 ACAACTTCAATGGTTAGATGGGAAAT 59.274 34.615 0.00 0.00 0.00 2.17
2612 3210 6.931281 GCATATATAGAGGCTTGACAACTTCA 59.069 38.462 0.00 0.00 0.00 3.02
2696 3297 1.850345 TGGGGGATAGACCAATCCAAC 59.150 52.381 5.32 0.00 46.29 3.77
2724 3325 8.248117 ACATTTGCTAAATCATTTCAAGCTTC 57.752 30.769 0.00 0.00 34.28 3.86
2728 3332 9.590451 ACCATACATTTGCTAAATCATTTCAAG 57.410 29.630 0.00 0.00 0.00 3.02
2839 3443 0.953960 AAGGATGGTTGGCGACGAAC 60.954 55.000 0.00 0.00 0.00 3.95
2938 3542 2.235402 GTCTTCTCCGGGGACATTAACA 59.765 50.000 1.51 0.00 0.00 2.41
2962 3566 0.866061 CGTCATAGTCTTCGTGGCCG 60.866 60.000 0.00 0.00 0.00 6.13
3067 3671 0.888619 TGAAGGTAGGTGTGAGAGCG 59.111 55.000 0.00 0.00 0.00 5.03
3107 3711 2.527951 ATCACCTTCTCCGCAGTGGC 62.528 60.000 0.00 0.00 37.80 5.01
3112 3716 1.191489 TGACCATCACCTTCTCCGCA 61.191 55.000 0.00 0.00 0.00 5.69
3142 3746 1.926561 TGTCATCTTTCTCCGCGATG 58.073 50.000 8.23 0.61 36.70 3.84
3161 3765 2.351276 GTCCTCCGTGGTGGCAAT 59.649 61.111 2.03 0.00 37.80 3.56
3193 3797 0.321122 CCTTCTCCAACTCAGCGCTT 60.321 55.000 7.50 0.00 0.00 4.68
3336 3940 0.529119 ACGACGTCCACCACTGTTTC 60.529 55.000 10.58 0.00 0.00 2.78
3341 3945 4.295119 GGCACGACGTCCACCACT 62.295 66.667 10.58 0.00 0.00 4.00
3406 4010 4.111016 TGGACGGCGACTAGTGCG 62.111 66.667 16.62 5.20 0.00 5.34
3409 4013 1.749638 CTCCTGGACGGCGACTAGT 60.750 63.158 16.62 0.00 0.00 2.57
3465 4069 2.125147 CGCCATCTCCGCCTTTCA 60.125 61.111 0.00 0.00 0.00 2.69
3496 4100 2.418669 TCCTTCACCCTCCACTTCTTT 58.581 47.619 0.00 0.00 0.00 2.52
3552 4156 0.601558 CTTGCTCTTGGCTGTTGCAT 59.398 50.000 0.00 0.00 42.39 3.96
3559 4163 3.181472 CCTTTTGAAACTTGCTCTTGGCT 60.181 43.478 0.00 0.00 42.39 4.75
3585 4189 3.175109 AGGAAACGACGAACAAGAAGT 57.825 42.857 0.00 0.00 0.00 3.01
3596 4200 1.399727 CGATGTGCCAAAGGAAACGAC 60.400 52.381 0.00 0.00 0.00 4.34
3665 4269 8.883731 ACATCGATGTTTAGGAATTAACAGAAG 58.116 33.333 25.18 0.00 37.90 2.85
3839 4773 8.059798 AGTGCAAGTTGCTATTCTCATTAAAT 57.940 30.769 27.17 0.06 45.31 1.40
3852 4786 1.202290 CGGTTCAAAGTGCAAGTTGCT 60.202 47.619 27.17 6.59 45.31 3.91
3884 4818 4.638421 TCAAACTAAAATATGGTCCGCCTG 59.362 41.667 0.00 0.00 35.27 4.85
3889 4823 8.336801 ACTCAACTCAAACTAAAATATGGTCC 57.663 34.615 0.00 0.00 0.00 4.46
3941 4875 4.753186 AGTGGGATAGTAAGTAGGGATGG 58.247 47.826 0.00 0.00 0.00 3.51
3952 4886 5.135383 AGTGCAACGTATAGTGGGATAGTA 58.865 41.667 0.00 0.00 45.86 1.82
3954 4888 4.585955 AGTGCAACGTATAGTGGGATAG 57.414 45.455 0.00 0.00 45.86 2.08
3956 4890 4.404715 ACTTAGTGCAACGTATAGTGGGAT 59.595 41.667 0.00 0.00 45.86 3.85
3958 4892 4.119442 ACTTAGTGCAACGTATAGTGGG 57.881 45.455 0.00 0.00 45.86 4.61
3959 4893 6.146510 TGAAAACTTAGTGCAACGTATAGTGG 59.853 38.462 0.00 0.00 45.86 4.00
4110 5067 9.659135 ATCCCTGATTTTTATGGATTGACATTA 57.341 29.630 0.00 0.00 31.87 1.90
4112 5069 7.785985 TCATCCCTGATTTTTATGGATTGACAT 59.214 33.333 0.00 0.00 33.60 3.06
4113 5070 7.124721 TCATCCCTGATTTTTATGGATTGACA 58.875 34.615 0.00 0.00 33.60 3.58
4221 5222 2.350804 CGTGCTCAGAGGTGATTGATTG 59.649 50.000 0.00 0.00 30.18 2.67
4281 5283 0.603065 CCCTAAAGCAAACTGCCACC 59.397 55.000 0.00 0.00 46.52 4.61
4282 5284 1.328279 ACCCTAAAGCAAACTGCCAC 58.672 50.000 0.00 0.00 46.52 5.01
4372 5471 7.327214 GTCTCTTCTGATCAGTAATTGGACTT 58.673 38.462 21.92 0.00 0.00 3.01
4410 5509 5.254032 TGGGATATAGAGGAGCACTAGATCA 59.746 44.000 0.00 0.00 39.10 2.92
4411 5510 5.592688 GTGGGATATAGAGGAGCACTAGATC 59.407 48.000 0.00 0.00 37.64 2.75
4412 5511 5.255207 AGTGGGATATAGAGGAGCACTAGAT 59.745 44.000 0.00 0.00 0.00 1.98
4413 5512 4.604050 AGTGGGATATAGAGGAGCACTAGA 59.396 45.833 0.00 0.00 0.00 2.43
4414 5513 4.704540 CAGTGGGATATAGAGGAGCACTAG 59.295 50.000 0.00 0.00 0.00 2.57
4415 5514 4.667573 CAGTGGGATATAGAGGAGCACTA 58.332 47.826 0.00 0.00 0.00 2.74
4416 5515 3.505386 CAGTGGGATATAGAGGAGCACT 58.495 50.000 0.00 0.00 0.00 4.40
4417 5516 2.028567 GCAGTGGGATATAGAGGAGCAC 60.029 54.545 0.00 0.00 0.00 4.40
4418 5517 2.158249 AGCAGTGGGATATAGAGGAGCA 60.158 50.000 0.00 0.00 0.00 4.26
4426 5525 8.664669 TGATATTACTGAAGCAGTGGGATATA 57.335 34.615 10.15 2.00 45.01 0.86
4443 5542 9.950680 ATGATGGTTGAAACGAAATGATATTAC 57.049 29.630 0.00 0.00 0.00 1.89
4497 5596 3.722908 TTGGAATGGACGTTTCCCATA 57.277 42.857 13.60 0.00 43.20 2.74
4518 5617 6.147581 CCGTACGCATTAATTAGAAGCTAGA 58.852 40.000 10.49 0.00 0.00 2.43
4531 5630 1.079057 TTGGCAGCCGTACGCATTA 60.079 52.632 10.49 0.00 41.38 1.90
4653 5753 4.789012 TGAAATGGTCCATCAAGAAAGC 57.211 40.909 4.39 0.00 0.00 3.51
5109 6209 5.765677 ACCCACTAGAAAGAGAAAGAAAAGC 59.234 40.000 0.00 0.00 0.00 3.51
5132 6232 6.622549 AGCACTATTAGTAACACTGACTGAC 58.377 40.000 0.00 0.00 0.00 3.51
5284 6384 4.115401 TGCTAGATTGATATAGCTGGCG 57.885 45.455 16.02 0.00 45.27 5.69
5489 6827 1.107538 CCAGCTTCCCTGCATCCATG 61.108 60.000 0.00 0.00 40.36 3.66
5493 6831 0.254178 TCTTCCAGCTTCCCTGCATC 59.746 55.000 0.00 0.00 40.36 3.91
5495 6833 0.700564 ATTCTTCCAGCTTCCCTGCA 59.299 50.000 0.00 0.00 40.36 4.41
5496 6834 1.340405 TGATTCTTCCAGCTTCCCTGC 60.340 52.381 0.00 0.00 40.36 4.85
5497 6835 2.751806 GTTGATTCTTCCAGCTTCCCTG 59.248 50.000 0.00 0.00 41.41 4.45
5498 6836 2.376518 TGTTGATTCTTCCAGCTTCCCT 59.623 45.455 0.00 0.00 0.00 4.20
5499 6837 2.795329 TGTTGATTCTTCCAGCTTCCC 58.205 47.619 0.00 0.00 0.00 3.97
5500 6838 3.823304 AGTTGTTGATTCTTCCAGCTTCC 59.177 43.478 0.00 0.00 0.00 3.46
5501 6839 4.276926 ACAGTTGTTGATTCTTCCAGCTTC 59.723 41.667 0.00 0.00 0.00 3.86
5502 6840 4.210331 ACAGTTGTTGATTCTTCCAGCTT 58.790 39.130 0.00 0.00 0.00 3.74
5503 6841 3.825328 ACAGTTGTTGATTCTTCCAGCT 58.175 40.909 0.00 0.00 0.00 4.24
5504 6842 4.574599 AACAGTTGTTGATTCTTCCAGC 57.425 40.909 0.00 0.00 36.80 4.85
5587 6932 3.140895 ACATTCAGGGGGATAAGGATTGG 59.859 47.826 0.00 0.00 0.00 3.16
5775 7121 1.630369 ACACAAGGCCATCAGCTAAGA 59.370 47.619 5.01 0.00 43.05 2.10
5820 7166 3.131709 TCAAGAGGAAGCAAAGACCAG 57.868 47.619 0.00 0.00 0.00 4.00
5821 7167 3.576078 TTCAAGAGGAAGCAAAGACCA 57.424 42.857 0.00 0.00 0.00 4.02
5822 7168 4.074970 TCATTCAAGAGGAAGCAAAGACC 58.925 43.478 0.00 0.00 39.30 3.85
5823 7169 5.240403 AGTTCATTCAAGAGGAAGCAAAGAC 59.760 40.000 0.00 0.00 39.30 3.01
5851 7197 2.925563 GCAATGCAAGCAATCCACTAAC 59.074 45.455 0.00 0.00 0.00 2.34
5874 7220 2.357009 CTGAAAGCAATCTCCCCAATCG 59.643 50.000 0.00 0.00 0.00 3.34
5937 7283 0.684805 CTAGATAGCTAGGCCCCGGG 60.685 65.000 15.80 15.80 40.37 5.73
5975 7321 4.191544 CTCCTATCGTTTGGATTTGAGCA 58.808 43.478 0.00 0.00 36.55 4.26
6016 7362 4.498681 CGTCTCACAAGATCGATCAGAAAG 59.501 45.833 26.47 18.11 33.08 2.62
6025 7371 2.166799 CACGTACGTCTCACAAGATCG 58.833 52.381 19.94 0.00 33.08 3.69
6031 7377 0.317519 CAGCACACGTACGTCTCACA 60.318 55.000 19.94 0.00 0.00 3.58
6041 7387 1.375140 CCTGATCAGCAGCACACGT 60.375 57.895 17.76 0.00 43.50 4.49
6042 7388 1.079612 TCCTGATCAGCAGCACACG 60.080 57.895 17.76 1.09 43.50 4.49
6043 7389 0.321034 TGTCCTGATCAGCAGCACAC 60.321 55.000 17.76 6.69 40.31 3.82
6044 7390 2.060370 TGTCCTGATCAGCAGCACA 58.940 52.632 17.76 12.91 42.89 4.57
6143 7545 3.750373 TAATCCGCTTCGCCCTGCC 62.750 63.158 0.00 0.00 0.00 4.85
6144 7546 2.203015 TAATCCGCTTCGCCCTGC 60.203 61.111 0.00 0.00 0.00 4.85
6148 7550 1.149148 GGATTCTAATCCGCTTCGCC 58.851 55.000 5.99 0.00 44.96 5.54
6195 7597 8.408043 ACTGATACACTGAATCCAATGAAAAA 57.592 30.769 0.00 0.00 0.00 1.94
6201 7603 6.942005 TGTCAAACTGATACACTGAATCCAAT 59.058 34.615 0.00 0.00 0.00 3.16
6203 7605 5.863965 TGTCAAACTGATACACTGAATCCA 58.136 37.500 0.00 0.00 0.00 3.41
6204 7606 6.801539 TTGTCAAACTGATACACTGAATCC 57.198 37.500 0.00 0.00 0.00 3.01
6210 7729 6.349611 GCCATGAATTGTCAAACTGATACACT 60.350 38.462 0.00 0.00 37.30 3.55
6216 7735 2.884012 ACGCCATGAATTGTCAAACTGA 59.116 40.909 0.00 0.00 37.30 3.41
6286 7805 0.899019 TAGTGATGGCTACGGTGCAA 59.101 50.000 0.00 0.00 34.04 4.08
6315 7834 9.923786 TGATGTAATTTAAACATACGTGCATAC 57.076 29.630 0.00 0.00 37.69 2.39
6340 7859 7.403312 AGATTCAGATCGGATCCTTATAGTG 57.597 40.000 14.19 4.80 37.37 2.74
6354 7873 8.256605 ACACTGCCACATATATAGATTCAGATC 58.743 37.037 0.00 0.00 0.00 2.75
6443 7962 6.508563 CGGTCTGTGAGATTATTCGTTCAATG 60.509 42.308 0.00 0.00 0.00 2.82
6446 7965 4.421058 CGGTCTGTGAGATTATTCGTTCA 58.579 43.478 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.