Multiple sequence alignment - TraesCS6B01G459600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G459600 chr6B 100.000 6991 0 0 1 6991 713904938 713911928 0.000000e+00 12911.0
1 TraesCS6B01G459600 chr6B 92.010 3179 231 12 2858 6018 713459980 713463153 0.000000e+00 4442.0
2 TraesCS6B01G459600 chr6B 91.126 3144 241 17 2857 5977 713945169 713948297 0.000000e+00 4226.0
3 TraesCS6B01G459600 chr6B 82.329 3237 452 67 2842 6014 713498036 713501216 0.000000e+00 2699.0
4 TraesCS6B01G459600 chr6B 92.547 1771 121 5 4296 6062 713358642 713360405 0.000000e+00 2529.0
5 TraesCS6B01G459600 chr6B 87.534 2182 227 29 3899 6062 713679908 713682062 0.000000e+00 2481.0
6 TraesCS6B01G459600 chr6B 89.039 1998 181 13 3948 5930 713771122 713773096 0.000000e+00 2442.0
7 TraesCS6B01G459600 chr6B 89.722 1761 162 12 4262 6008 713826041 713827796 0.000000e+00 2231.0
8 TraesCS6B01G459600 chr6B 86.068 1615 168 29 830 2432 713458409 713459978 0.000000e+00 1683.0
9 TraesCS6B01G459600 chr6B 86.948 1471 152 20 973 2433 713943729 713945169 0.000000e+00 1616.0
10 TraesCS6B01G459600 chr6B 91.300 954 41 13 6068 6991 147607085 147606144 0.000000e+00 1264.0
11 TraesCS6B01G459600 chr6B 80.552 1702 224 51 555 2219 713822095 713823726 0.000000e+00 1210.0
12 TraesCS6B01G459600 chr6B 82.540 1386 213 21 2888 4259 713345516 713346886 0.000000e+00 1192.0
13 TraesCS6B01G459600 chr6B 83.975 1273 166 23 978 2224 713755231 713756491 0.000000e+00 1186.0
14 TraesCS6B01G459600 chr6B 83.207 1185 167 19 1064 2231 713669035 713670204 0.000000e+00 1057.0
15 TraesCS6B01G459600 chr6B 78.808 1359 236 33 1099 2430 713768012 713769345 0.000000e+00 867.0
16 TraesCS6B01G459600 chr6B 78.481 1422 232 50 2841 4237 713824601 713825973 0.000000e+00 863.0
17 TraesCS6B01G459600 chr6B 79.651 1145 173 45 1367 2484 713496458 713497569 0.000000e+00 769.0
18 TraesCS6B01G459600 chr6B 92.410 527 38 2 1 527 713640836 713641360 0.000000e+00 750.0
19 TraesCS6B01G459600 chr6B 77.137 1041 171 41 2776 3773 713677329 713678345 6.170000e-150 542.0
20 TraesCS6B01G459600 chr6B 77.157 788 126 27 2947 3701 713757333 713758099 6.530000e-110 409.0
21 TraesCS6B01G459600 chr6B 92.226 283 22 0 1146 1428 713496182 713496464 1.090000e-107 401.0
22 TraesCS6B01G459600 chr6B 88.401 319 36 1 561 879 713495729 713496046 3.960000e-102 383.0
23 TraesCS6B01G459600 chr6B 74.023 1024 179 53 1492 2490 713870489 713871450 3.120000e-88 337.0
24 TraesCS6B01G459600 chr6B 84.643 280 27 9 569 841 713943424 713943694 1.500000e-66 265.0
25 TraesCS6B01G459600 chr6B 82.520 246 30 8 670 913 713668694 713668928 3.310000e-48 204.0
26 TraesCS6B01G459600 chr6B 90.714 140 13 0 129 268 713493442 713493581 3.330000e-43 187.0
27 TraesCS6B01G459600 chr6B 88.652 141 13 3 6552 6689 226650361 226650501 1.210000e-37 169.0
28 TraesCS6B01G459600 chr6B 98.649 74 1 0 1 74 713768555 713768628 1.580000e-26 132.0
29 TraesCS6B01G459600 chr6B 95.652 69 3 0 1 69 713343156 713343224 2.060000e-20 111.0
30 TraesCS6B01G459600 chr6B 91.026 78 6 1 1 77 713496731 713496808 3.450000e-18 104.0
31 TraesCS6B01G459600 chr6B 91.026 78 6 1 1 77 713755904 713755981 3.450000e-18 104.0
32 TraesCS6B01G459600 chr6B 83.929 112 13 5 572 678 713457073 713457184 1.240000e-17 102.0
33 TraesCS6B01G459600 chr6B 83.158 95 15 1 737 831 713458200 713458293 1.250000e-12 86.1
34 TraesCS6B01G459600 chr6D 82.794 3307 441 66 2773 6014 467857893 467861136 0.000000e+00 2837.0
35 TraesCS6B01G459600 chr6D 79.365 2016 282 83 559 2527 467855463 467857391 0.000000e+00 1295.0
36 TraesCS6B01G459600 chr6D 78.495 186 40 0 372 557 327367522 327367337 9.520000e-24 122.0
37 TraesCS6B01G459600 chr6A 94.545 1760 91 3 4259 6014 613974741 613976499 0.000000e+00 2713.0
38 TraesCS6B01G459600 chr6A 87.958 2209 231 24 563 2748 613968973 613971169 0.000000e+00 2573.0
39 TraesCS6B01G459600 chr6A 91.251 1383 103 13 2885 4259 613973140 613974512 0.000000e+00 1868.0
40 TraesCS6B01G459600 chr6A 91.129 124 11 0 144 267 613968800 613968923 1.210000e-37 169.0
41 TraesCS6B01G459600 chr6A 87.162 148 8 7 6068 6205 63604090 63603944 2.610000e-34 158.0
42 TraesCS6B01G459600 chr6A 90.909 55 5 0 503 557 80039111 80039057 2.700000e-09 75.0
43 TraesCS6B01G459600 chr6A 91.837 49 4 0 501 549 80039161 80039113 1.260000e-07 69.4
44 TraesCS6B01G459600 chr7A 92.628 312 18 4 6068 6376 58247001 58247310 1.790000e-120 444.0
45 TraesCS6B01G459600 chr7A 88.850 287 31 1 6527 6812 58247401 58247687 1.120000e-92 351.0
46 TraesCS6B01G459600 chr7A 94.958 119 6 0 6873 6991 58247698 58247816 3.330000e-43 187.0
47 TraesCS6B01G459600 chr7A 75.592 422 59 27 6222 6634 618663339 618663725 1.210000e-37 169.0
48 TraesCS6B01G459600 chr7A 85.987 157 14 6 6068 6216 603521003 603520847 2.020000e-35 161.0
49 TraesCS6B01G459600 chr7D 90.968 310 14 2 6696 6991 10967552 10967861 8.440000e-109 405.0
50 TraesCS6B01G459600 chr7D 87.725 334 25 8 6033 6351 10966974 10967306 6.620000e-100 375.0
51 TraesCS6B01G459600 chr7D 84.043 282 19 12 6389 6668 10967303 10967560 1.510000e-61 248.0
52 TraesCS6B01G459600 chr2A 76.027 584 73 40 6067 6634 778250340 778249808 2.520000e-59 241.0
53 TraesCS6B01G459600 chr3D 81.724 290 46 6 271 557 8889615 8889330 1.170000e-57 235.0
54 TraesCS6B01G459600 chr4B 86.528 193 21 4 6296 6488 645465022 645465209 2.560000e-49 207.0
55 TraesCS6B01G459600 chr7B 89.677 155 10 4 6068 6216 300034540 300034386 7.160000e-45 193.0
56 TraesCS6B01G459600 chr5A 81.498 227 42 0 331 557 332727780 332728006 3.330000e-43 187.0
57 TraesCS6B01G459600 chr5A 87.500 72 6 3 6566 6634 660207224 660207295 5.810000e-11 80.5
58 TraesCS6B01G459600 chr4D 85.876 177 21 4 6552 6725 311355689 311355514 1.200000e-42 185.0
59 TraesCS6B01G459600 chr5B 86.928 153 14 4 6068 6214 535079167 535079319 4.340000e-37 167.0
60 TraesCS6B01G459600 chr2B 85.802 162 13 6 6066 6218 708097411 708097571 5.610000e-36 163.0
61 TraesCS6B01G459600 chr2B 85.625 160 10 10 6057 6205 205638377 205638534 9.390000e-34 156.0
62 TraesCS6B01G459600 chr3B 75.874 286 59 9 280 560 801135148 801134868 3.400000e-28 137.0
63 TraesCS6B01G459600 chr1D 85.938 64 9 0 494 557 20066171 20066234 1.260000e-07 69.4
64 TraesCS6B01G459600 chr1D 87.500 56 2 4 507 559 443123876 443123823 7.570000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G459600 chr6B 713904938 713911928 6990 False 12911.000000 12911 100.000000 1 6991 1 chr6B.!!$F5 6990
1 TraesCS6B01G459600 chr6B 713358642 713360405 1763 False 2529.000000 2529 92.547000 4296 6062 1 chr6B.!!$F2 1766
2 TraesCS6B01G459600 chr6B 713943424 713948297 4873 False 2035.666667 4226 87.572333 569 5977 3 chr6B.!!$F14 5408
3 TraesCS6B01G459600 chr6B 713457073 713463153 6080 False 1578.275000 4442 86.291250 572 6018 4 chr6B.!!$F7 5446
4 TraesCS6B01G459600 chr6B 713677329 713682062 4733 False 1511.500000 2481 82.335500 2776 6062 2 chr6B.!!$F10 3286
5 TraesCS6B01G459600 chr6B 713822095 713827796 5701 False 1434.666667 2231 82.918333 555 6008 3 chr6B.!!$F13 5453
6 TraesCS6B01G459600 chr6B 147606144 147607085 941 True 1264.000000 1264 91.300000 6068 6991 1 chr6B.!!$R1 923
7 TraesCS6B01G459600 chr6B 713768012 713773096 5084 False 1147.000000 2442 88.832000 1 5930 3 chr6B.!!$F12 5929
8 TraesCS6B01G459600 chr6B 713493442 713501216 7774 False 757.166667 2699 87.391167 1 6014 6 chr6B.!!$F8 6013
9 TraesCS6B01G459600 chr6B 713640836 713641360 524 False 750.000000 750 92.410000 1 527 1 chr6B.!!$F3 526
10 TraesCS6B01G459600 chr6B 713343156 713346886 3730 False 651.500000 1192 89.096000 1 4259 2 chr6B.!!$F6 4258
11 TraesCS6B01G459600 chr6B 713668694 713670204 1510 False 630.500000 1057 82.863500 670 2231 2 chr6B.!!$F9 1561
12 TraesCS6B01G459600 chr6B 713755231 713758099 2868 False 566.333333 1186 84.052667 1 3701 3 chr6B.!!$F11 3700
13 TraesCS6B01G459600 chr6B 713870489 713871450 961 False 337.000000 337 74.023000 1492 2490 1 chr6B.!!$F4 998
14 TraesCS6B01G459600 chr6D 467855463 467861136 5673 False 2066.000000 2837 81.079500 559 6014 2 chr6D.!!$F1 5455
15 TraesCS6B01G459600 chr6A 613968800 613976499 7699 False 1830.750000 2713 91.220750 144 6014 4 chr6A.!!$F1 5870
16 TraesCS6B01G459600 chr7A 58247001 58247816 815 False 327.333333 444 92.145333 6068 6991 3 chr7A.!!$F2 923
17 TraesCS6B01G459600 chr7D 10966974 10967861 887 False 342.666667 405 87.578667 6033 6991 3 chr7D.!!$F1 958
18 TraesCS6B01G459600 chr2A 778249808 778250340 532 True 241.000000 241 76.027000 6067 6634 1 chr2A.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 1610 0.036732 GGTGATGGTGCAGGACTTGA 59.963 55.000 0.00 0.0 0.00 3.02 F
615 2481 0.037017 TTTGGGGTGGATGTACGTGG 59.963 55.000 0.00 0.0 0.00 4.94 F
677 2551 0.108804 CACGTAGTCTGCCCGTCAAT 60.109 55.000 0.00 0.0 41.61 2.57 F
1002 3979 0.172803 GTAACTGACCCGCGATGACT 59.827 55.000 8.23 0.0 0.00 3.41 F
1511 4578 0.238289 CACTTCAACGTCACCATGGC 59.762 55.000 13.04 0.0 0.00 4.40 F
2513 5923 0.382515 CTGCGGTCTCTACTAGTGGC 59.617 60.000 5.39 0.0 0.00 5.01 F
3471 10925 1.135689 GGTTATCGTTGCCAGTGCTTG 60.136 52.381 0.00 0.0 38.71 4.01 F
4596 13869 2.368875 ACTTGCGCTAGGTATAATGGCT 59.631 45.455 22.48 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 4603 0.839277 CAGGTGCCTCCCATGACATA 59.161 55.000 0.00 0.00 36.75 2.29 R
2097 5184 1.003355 ACCTTGACAGCCGTCCATG 60.003 57.895 0.00 0.00 41.85 3.66 R
2281 5559 3.169355 AGGATGCGCAATGATTTTTCC 57.831 42.857 17.11 14.75 0.00 3.13 R
2959 10365 0.376152 GCTGCAGATGGAATGACACG 59.624 55.000 20.43 0.00 0.00 4.49 R
3243 10694 2.195727 TCTAGTTCCATGTGCCCATCA 58.804 47.619 0.00 0.00 0.00 3.07 R
4351 13610 0.179067 TTTCGCAACTATAGCCCCCG 60.179 55.000 0.00 0.00 0.00 5.73 R
5405 14679 1.268079 GCTGAAGTCCTTCCACAAAGC 59.732 52.381 4.67 3.16 38.77 3.51 R
6270 15591 0.796312 CCGAAGTGGAACAATCACGG 59.204 55.000 0.00 0.00 45.16 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.710096 ACCAACAATCCCATCGGTAG 57.290 50.000 0.00 0.00 0.00 3.18
20 21 1.913419 ACCAACAATCCCATCGGTAGT 59.087 47.619 0.00 0.00 0.00 2.73
21 22 2.307686 ACCAACAATCCCATCGGTAGTT 59.692 45.455 0.00 0.00 0.00 2.24
22 23 2.682856 CCAACAATCCCATCGGTAGTTG 59.317 50.000 0.00 0.00 36.69 3.16
23 24 2.038387 ACAATCCCATCGGTAGTTGC 57.962 50.000 0.00 0.00 0.00 4.17
24 25 1.280710 ACAATCCCATCGGTAGTTGCA 59.719 47.619 0.00 0.00 0.00 4.08
25 26 2.092429 ACAATCCCATCGGTAGTTGCAT 60.092 45.455 0.00 0.00 0.00 3.96
26 27 2.260844 ATCCCATCGGTAGTTGCATG 57.739 50.000 0.00 0.00 0.00 4.06
27 28 1.199615 TCCCATCGGTAGTTGCATGA 58.800 50.000 0.00 0.00 0.00 3.07
28 29 1.138859 TCCCATCGGTAGTTGCATGAG 59.861 52.381 0.00 0.00 0.00 2.90
29 30 1.134401 CCCATCGGTAGTTGCATGAGT 60.134 52.381 0.00 0.00 0.00 3.41
30 31 2.102420 CCCATCGGTAGTTGCATGAGTA 59.898 50.000 0.00 0.00 0.00 2.59
31 32 3.244215 CCCATCGGTAGTTGCATGAGTAT 60.244 47.826 0.00 0.00 0.00 2.12
32 33 4.380531 CCATCGGTAGTTGCATGAGTATT 58.619 43.478 0.00 0.00 0.00 1.89
33 34 4.816385 CCATCGGTAGTTGCATGAGTATTT 59.184 41.667 0.00 0.00 0.00 1.40
34 35 5.277490 CCATCGGTAGTTGCATGAGTATTTG 60.277 44.000 0.00 0.00 0.00 2.32
35 36 3.621268 TCGGTAGTTGCATGAGTATTTGC 59.379 43.478 0.00 0.00 39.33 3.68
36 37 3.242739 CGGTAGTTGCATGAGTATTTGCC 60.243 47.826 0.00 0.00 38.08 4.52
37 38 3.947834 GGTAGTTGCATGAGTATTTGCCT 59.052 43.478 0.00 0.00 38.08 4.75
38 39 5.123227 GGTAGTTGCATGAGTATTTGCCTA 58.877 41.667 0.00 0.00 38.08 3.93
39 40 5.237344 GGTAGTTGCATGAGTATTTGCCTAG 59.763 44.000 0.00 0.00 38.08 3.02
40 41 5.102953 AGTTGCATGAGTATTTGCCTAGA 57.897 39.130 0.00 0.00 38.08 2.43
41 42 4.878397 AGTTGCATGAGTATTTGCCTAGAC 59.122 41.667 0.00 0.00 38.08 2.59
42 43 3.457234 TGCATGAGTATTTGCCTAGACG 58.543 45.455 0.00 0.00 38.08 4.18
43 44 3.132111 TGCATGAGTATTTGCCTAGACGA 59.868 43.478 0.00 0.00 38.08 4.20
44 45 3.491267 GCATGAGTATTTGCCTAGACGAC 59.509 47.826 0.00 0.00 32.66 4.34
45 46 4.682787 CATGAGTATTTGCCTAGACGACA 58.317 43.478 0.00 0.00 0.00 4.35
46 47 4.794278 TGAGTATTTGCCTAGACGACAA 57.206 40.909 0.00 0.00 0.00 3.18
47 48 5.142061 TGAGTATTTGCCTAGACGACAAA 57.858 39.130 0.00 0.00 37.66 2.83
48 49 5.168569 TGAGTATTTGCCTAGACGACAAAG 58.831 41.667 0.00 0.00 36.78 2.77
49 50 5.148651 AGTATTTGCCTAGACGACAAAGT 57.851 39.130 0.00 0.00 36.78 2.66
50 51 4.929808 AGTATTTGCCTAGACGACAAAGTG 59.070 41.667 0.00 0.00 36.78 3.16
51 52 2.163818 TTGCCTAGACGACAAAGTGG 57.836 50.000 0.00 0.00 0.00 4.00
52 53 0.320421 TGCCTAGACGACAAAGTGGC 60.320 55.000 0.00 0.00 39.33 5.01
53 54 1.019805 GCCTAGACGACAAAGTGGCC 61.020 60.000 0.00 0.00 33.45 5.36
54 55 0.320374 CCTAGACGACAAAGTGGCCA 59.680 55.000 0.00 0.00 0.00 5.36
55 56 1.066143 CCTAGACGACAAAGTGGCCAT 60.066 52.381 9.72 0.00 0.00 4.40
56 57 2.002586 CTAGACGACAAAGTGGCCATG 58.997 52.381 9.72 5.87 0.00 3.66
57 58 0.606401 AGACGACAAAGTGGCCATGG 60.606 55.000 9.72 7.63 0.00 3.66
58 59 0.605319 GACGACAAAGTGGCCATGGA 60.605 55.000 18.40 0.00 0.00 3.41
59 60 0.606401 ACGACAAAGTGGCCATGGAG 60.606 55.000 18.40 4.46 0.00 3.86
60 61 1.308069 CGACAAAGTGGCCATGGAGG 61.308 60.000 18.40 0.08 41.84 4.30
61 62 0.038166 GACAAAGTGGCCATGGAGGA 59.962 55.000 18.40 0.00 41.22 3.71
62 63 0.038744 ACAAAGTGGCCATGGAGGAG 59.961 55.000 18.40 0.00 41.22 3.69
63 64 0.682209 CAAAGTGGCCATGGAGGAGG 60.682 60.000 18.40 0.00 41.22 4.30
72 73 3.582998 CCATGGAGGAGGCAAATCTAA 57.417 47.619 5.56 0.00 41.22 2.10
73 74 3.217626 CCATGGAGGAGGCAAATCTAAC 58.782 50.000 5.56 0.00 41.22 2.34
74 75 3.371917 CCATGGAGGAGGCAAATCTAACA 60.372 47.826 5.56 0.00 41.22 2.41
75 76 4.272489 CATGGAGGAGGCAAATCTAACAA 58.728 43.478 0.00 0.00 0.00 2.83
76 77 3.686016 TGGAGGAGGCAAATCTAACAAC 58.314 45.455 0.00 0.00 0.00 3.32
77 78 2.678336 GGAGGAGGCAAATCTAACAACG 59.322 50.000 0.00 0.00 0.00 4.10
78 79 3.596214 GAGGAGGCAAATCTAACAACGA 58.404 45.455 0.00 0.00 0.00 3.85
79 80 3.335579 AGGAGGCAAATCTAACAACGAC 58.664 45.455 0.00 0.00 0.00 4.34
80 81 3.071479 GGAGGCAAATCTAACAACGACA 58.929 45.455 0.00 0.00 0.00 4.35
81 82 3.500680 GGAGGCAAATCTAACAACGACAA 59.499 43.478 0.00 0.00 0.00 3.18
82 83 4.023536 GGAGGCAAATCTAACAACGACAAA 60.024 41.667 0.00 0.00 0.00 2.83
83 84 5.108385 AGGCAAATCTAACAACGACAAAG 57.892 39.130 0.00 0.00 0.00 2.77
84 85 4.578928 AGGCAAATCTAACAACGACAAAGT 59.421 37.500 0.00 0.00 0.00 2.66
85 86 4.675114 GGCAAATCTAACAACGACAAAGTG 59.325 41.667 0.00 0.00 0.00 3.16
86 87 4.675114 GCAAATCTAACAACGACAAAGTGG 59.325 41.667 0.00 0.00 0.00 4.00
87 88 4.483476 AATCTAACAACGACAAAGTGGC 57.517 40.909 0.00 0.00 0.00 5.01
88 89 2.215196 TCTAACAACGACAAAGTGGCC 58.785 47.619 0.00 0.00 0.00 5.36
89 90 1.944024 CTAACAACGACAAAGTGGCCA 59.056 47.619 0.00 0.00 0.00 5.36
90 91 1.398692 AACAACGACAAAGTGGCCAT 58.601 45.000 9.72 0.00 0.00 4.40
91 92 0.667993 ACAACGACAAAGTGGCCATG 59.332 50.000 9.72 5.87 0.00 3.66
92 93 0.950836 CAACGACAAAGTGGCCATGA 59.049 50.000 9.72 0.00 0.00 3.07
93 94 1.069022 CAACGACAAAGTGGCCATGAG 60.069 52.381 9.72 6.13 0.00 2.90
94 95 0.108585 ACGACAAAGTGGCCATGAGT 59.891 50.000 9.72 5.65 0.00 3.41
95 96 1.346395 ACGACAAAGTGGCCATGAGTA 59.654 47.619 9.72 0.00 0.00 2.59
96 97 2.027192 ACGACAAAGTGGCCATGAGTAT 60.027 45.455 9.72 0.00 0.00 2.12
97 98 3.009723 CGACAAAGTGGCCATGAGTATT 58.990 45.455 9.72 0.00 0.00 1.89
98 99 3.440173 CGACAAAGTGGCCATGAGTATTT 59.560 43.478 9.72 0.85 0.00 1.40
99 100 4.437390 CGACAAAGTGGCCATGAGTATTTC 60.437 45.833 9.72 0.00 0.00 2.17
100 101 4.406456 ACAAAGTGGCCATGAGTATTTCA 58.594 39.130 9.72 0.00 40.85 2.69
101 102 4.832266 ACAAAGTGGCCATGAGTATTTCAA 59.168 37.500 9.72 0.00 39.77 2.69
102 103 5.163513 CAAAGTGGCCATGAGTATTTCAAC 58.836 41.667 9.72 0.00 39.77 3.18
103 104 4.032960 AGTGGCCATGAGTATTTCAACA 57.967 40.909 9.72 0.00 39.77 3.33
104 105 4.406456 AGTGGCCATGAGTATTTCAACAA 58.594 39.130 9.72 0.00 39.77 2.83
105 106 4.832266 AGTGGCCATGAGTATTTCAACAAA 59.168 37.500 9.72 0.00 39.77 2.83
106 107 5.047802 AGTGGCCATGAGTATTTCAACAAAG 60.048 40.000 9.72 0.00 39.77 2.77
107 108 4.220382 TGGCCATGAGTATTTCAACAAAGG 59.780 41.667 0.00 0.00 39.77 3.11
108 109 4.381932 GGCCATGAGTATTTCAACAAAGGG 60.382 45.833 0.00 0.00 39.77 3.95
109 110 4.747810 CCATGAGTATTTCAACAAAGGGC 58.252 43.478 0.00 0.00 39.77 5.19
110 111 4.381932 CCATGAGTATTTCAACAAAGGGCC 60.382 45.833 0.00 0.00 39.77 5.80
111 112 3.838565 TGAGTATTTCAACAAAGGGCCA 58.161 40.909 6.18 0.00 31.34 5.36
112 113 4.219115 TGAGTATTTCAACAAAGGGCCAA 58.781 39.130 6.18 0.00 31.34 4.52
113 114 4.651503 TGAGTATTTCAACAAAGGGCCAAA 59.348 37.500 6.18 0.00 31.34 3.28
114 115 5.306678 TGAGTATTTCAACAAAGGGCCAAAT 59.693 36.000 6.18 3.53 31.34 2.32
115 116 6.495181 TGAGTATTTCAACAAAGGGCCAAATA 59.505 34.615 6.18 2.46 31.34 1.40
116 117 7.015682 TGAGTATTTCAACAAAGGGCCAAATAA 59.984 33.333 6.18 0.00 31.34 1.40
117 118 7.740805 AGTATTTCAACAAAGGGCCAAATAAA 58.259 30.769 6.18 0.00 0.00 1.40
118 119 7.877612 AGTATTTCAACAAAGGGCCAAATAAAG 59.122 33.333 6.18 0.00 0.00 1.85
119 120 5.878406 TTCAACAAAGGGCCAAATAAAGA 57.122 34.783 6.18 0.00 0.00 2.52
120 121 5.878406 TCAACAAAGGGCCAAATAAAGAA 57.122 34.783 6.18 0.00 0.00 2.52
121 122 6.432403 TCAACAAAGGGCCAAATAAAGAAT 57.568 33.333 6.18 0.00 0.00 2.40
122 123 6.836242 TCAACAAAGGGCCAAATAAAGAATT 58.164 32.000 6.18 0.00 0.00 2.17
123 124 6.934083 TCAACAAAGGGCCAAATAAAGAATTC 59.066 34.615 6.18 0.00 0.00 2.17
124 125 6.686484 ACAAAGGGCCAAATAAAGAATTCT 57.314 33.333 6.18 0.88 0.00 2.40
125 126 6.701340 ACAAAGGGCCAAATAAAGAATTCTC 58.299 36.000 8.78 0.00 0.00 2.87
126 127 6.498303 ACAAAGGGCCAAATAAAGAATTCTCT 59.502 34.615 8.78 0.00 0.00 3.10
127 128 6.782082 AAGGGCCAAATAAAGAATTCTCTC 57.218 37.500 8.78 0.00 0.00 3.20
128 129 6.084749 AGGGCCAAATAAAGAATTCTCTCT 57.915 37.500 8.78 0.00 0.00 3.10
129 130 5.890419 AGGGCCAAATAAAGAATTCTCTCTG 59.110 40.000 8.78 2.66 0.00 3.35
130 131 5.888161 GGGCCAAATAAAGAATTCTCTCTGA 59.112 40.000 8.78 0.00 0.00 3.27
131 132 6.378280 GGGCCAAATAAAGAATTCTCTCTGAA 59.622 38.462 8.78 0.00 39.24 3.02
132 133 7.416101 GGGCCAAATAAAGAATTCTCTCTGAAG 60.416 40.741 8.78 0.00 38.18 3.02
141 142 5.128663 AGAATTCTCTCTGAAGTAGAAGGGC 59.871 44.000 0.88 0.00 38.18 5.19
165 166 3.343617 CAAACCCGAAGATAAGGAGCAA 58.656 45.455 0.00 0.00 0.00 3.91
168 169 1.587547 CCGAAGATAAGGAGCAAGGC 58.412 55.000 0.00 0.00 0.00 4.35
171 172 0.464554 AAGATAAGGAGCAAGGCCGC 60.465 55.000 0.00 0.00 0.00 6.53
205 206 0.597377 GGCTTGAGCAAACCAAACCG 60.597 55.000 5.24 0.00 44.36 4.44
213 214 4.214545 TGAGCAAACCAAACCGTATACTTG 59.785 41.667 0.56 0.00 0.00 3.16
223 224 5.580911 AACCGTATACTTGAACGTTGAAC 57.419 39.130 5.00 0.00 37.40 3.18
268 274 2.761208 GCACTCACTCACTAGGGTACAT 59.239 50.000 0.00 0.00 0.00 2.29
270 276 2.761208 ACTCACTCACTAGGGTACATGC 59.239 50.000 0.00 0.00 0.00 4.06
271 277 2.760650 CTCACTCACTAGGGTACATGCA 59.239 50.000 0.00 0.00 0.00 3.96
280 1581 1.103398 GGGTACATGCATGTGGCCTC 61.103 60.000 36.72 25.52 43.89 4.70
290 1591 1.134367 CATGTGGCCTCAGATTGCAAG 59.866 52.381 13.77 0.00 0.00 4.01
291 1592 0.609957 TGTGGCCTCAGATTGCAAGG 60.610 55.000 3.32 0.30 0.00 3.61
292 1593 0.610232 GTGGCCTCAGATTGCAAGGT 60.610 55.000 3.32 0.00 32.49 3.50
293 1594 0.609957 TGGCCTCAGATTGCAAGGTG 60.610 55.000 3.32 4.82 32.49 4.00
294 1595 0.322816 GGCCTCAGATTGCAAGGTGA 60.323 55.000 4.94 9.21 32.49 4.02
297 1598 2.022195 CCTCAGATTGCAAGGTGATGG 58.978 52.381 12.58 11.94 0.00 3.51
298 1599 2.619849 CCTCAGATTGCAAGGTGATGGT 60.620 50.000 12.58 0.00 0.00 3.55
299 1600 2.422479 CTCAGATTGCAAGGTGATGGTG 59.578 50.000 12.58 0.29 0.00 4.17
300 1601 1.135199 CAGATTGCAAGGTGATGGTGC 60.135 52.381 4.94 0.00 38.78 5.01
302 1603 4.084265 TGCAAGGTGATGGTGCAG 57.916 55.556 0.00 0.00 43.09 4.41
303 1604 1.604308 TGCAAGGTGATGGTGCAGG 60.604 57.895 0.00 0.00 43.09 4.85
305 1606 1.589716 GCAAGGTGATGGTGCAGGAC 61.590 60.000 0.00 0.00 38.19 3.85
306 1607 0.037303 CAAGGTGATGGTGCAGGACT 59.963 55.000 0.00 0.00 0.00 3.85
308 1609 0.037303 AGGTGATGGTGCAGGACTTG 59.963 55.000 0.00 0.00 0.00 3.16
309 1610 0.036732 GGTGATGGTGCAGGACTTGA 59.963 55.000 0.00 0.00 0.00 3.02
311 1612 1.808945 GTGATGGTGCAGGACTTGAAG 59.191 52.381 0.00 0.00 0.00 3.02
312 1613 1.699083 TGATGGTGCAGGACTTGAAGA 59.301 47.619 0.00 0.00 0.00 2.87
314 1615 2.260844 TGGTGCAGGACTTGAAGAAG 57.739 50.000 0.00 0.00 35.07 2.85
316 1617 1.072331 GGTGCAGGACTTGAAGAAGGA 59.928 52.381 0.00 0.00 32.95 3.36
318 1619 3.055094 GGTGCAGGACTTGAAGAAGGATA 60.055 47.826 0.00 0.00 32.95 2.59
319 1620 4.565652 GGTGCAGGACTTGAAGAAGGATAA 60.566 45.833 0.00 0.00 32.95 1.75
320 1621 4.393371 GTGCAGGACTTGAAGAAGGATAAC 59.607 45.833 0.00 0.00 32.95 1.89
321 1622 4.287067 TGCAGGACTTGAAGAAGGATAACT 59.713 41.667 0.00 0.00 32.95 2.24
322 1623 4.873259 GCAGGACTTGAAGAAGGATAACTC 59.127 45.833 0.00 0.00 32.95 3.01
323 1624 5.337975 GCAGGACTTGAAGAAGGATAACTCT 60.338 44.000 0.00 0.00 32.95 3.24
324 1625 6.706295 CAGGACTTGAAGAAGGATAACTCTT 58.294 40.000 0.00 0.00 32.95 2.85
325 1626 7.164803 CAGGACTTGAAGAAGGATAACTCTTT 58.835 38.462 0.00 0.00 32.95 2.52
326 1627 8.314751 CAGGACTTGAAGAAGGATAACTCTTTA 58.685 37.037 0.00 0.00 32.95 1.85
328 1629 8.315482 GGACTTGAAGAAGGATAACTCTTTAGT 58.685 37.037 0.00 0.00 33.30 2.24
329 1630 9.713713 GACTTGAAGAAGGATAACTCTTTAGTT 57.286 33.333 0.00 0.00 40.19 2.24
335 1636 8.358582 AGAAGGATAACTCTTTAGTTTACGGA 57.641 34.615 0.00 0.00 43.60 4.69
337 1638 6.571605 AGGATAACTCTTTAGTTTACGGAGC 58.428 40.000 0.00 0.00 43.60 4.70
338 1639 6.380560 AGGATAACTCTTTAGTTTACGGAGCT 59.619 38.462 0.00 0.00 43.60 4.09
341 1642 9.396938 GATAACTCTTTAGTTTACGGAGCTATC 57.603 37.037 0.00 0.00 43.60 2.08
342 1643 6.770746 ACTCTTTAGTTTACGGAGCTATCA 57.229 37.500 0.00 0.00 29.00 2.15
344 1645 8.461249 ACTCTTTAGTTTACGGAGCTATCATA 57.539 34.615 0.00 0.00 29.00 2.15
345 1646 8.351461 ACTCTTTAGTTTACGGAGCTATCATAC 58.649 37.037 0.00 0.00 29.00 2.39
346 1647 8.229253 TCTTTAGTTTACGGAGCTATCATACA 57.771 34.615 0.00 0.00 0.00 2.29
347 1648 8.857098 TCTTTAGTTTACGGAGCTATCATACAT 58.143 33.333 0.00 0.00 0.00 2.29
354 1655 9.990360 TTTACGGAGCTATCATACATGAAATAA 57.010 29.630 0.00 0.00 40.69 1.40
355 1656 7.891183 ACGGAGCTATCATACATGAAATAAC 57.109 36.000 0.00 0.00 40.69 1.89
356 1657 7.671302 ACGGAGCTATCATACATGAAATAACT 58.329 34.615 0.00 0.00 40.69 2.24
357 1658 7.815068 ACGGAGCTATCATACATGAAATAACTC 59.185 37.037 0.00 2.22 40.69 3.01
359 1660 9.664332 GGAGCTATCATACATGAAATAACTCAT 57.336 33.333 0.00 0.00 40.69 2.90
368 1669 7.474398 ACATGAAATAACTCATCACTCATCG 57.526 36.000 0.00 0.00 33.66 3.84
369 1670 6.481313 ACATGAAATAACTCATCACTCATCGG 59.519 38.462 0.00 0.00 33.66 4.18
370 1671 6.220726 TGAAATAACTCATCACTCATCGGA 57.779 37.500 0.00 0.00 0.00 4.55
376 1677 3.624861 ACTCATCACTCATCGGATTTTGC 59.375 43.478 0.00 0.00 0.00 3.68
379 1680 4.701651 TCATCACTCATCGGATTTTGCTTT 59.298 37.500 0.00 0.00 0.00 3.51
380 1681 5.183713 TCATCACTCATCGGATTTTGCTTTT 59.816 36.000 0.00 0.00 0.00 2.27
381 1682 5.452078 TCACTCATCGGATTTTGCTTTTT 57.548 34.783 0.00 0.00 0.00 1.94
382 1683 5.221880 TCACTCATCGGATTTTGCTTTTTG 58.778 37.500 0.00 0.00 0.00 2.44
384 1685 6.016693 TCACTCATCGGATTTTGCTTTTTGTA 60.017 34.615 0.00 0.00 0.00 2.41
385 1686 6.640499 CACTCATCGGATTTTGCTTTTTGTAA 59.360 34.615 0.00 0.00 0.00 2.41
386 1687 7.168972 CACTCATCGGATTTTGCTTTTTGTAAA 59.831 33.333 0.00 0.00 0.00 2.01
387 1688 7.872483 ACTCATCGGATTTTGCTTTTTGTAAAT 59.128 29.630 0.00 0.00 30.72 1.40
389 1690 9.050601 TCATCGGATTTTGCTTTTTGTAAATTT 57.949 25.926 0.00 0.00 30.72 1.82
393 1694 9.376171 CGGATTTTGCTTTTTGTAAATTTAACC 57.624 29.630 0.00 0.00 30.72 2.85
421 1722 9.979578 TTAATTTATGCACTCAAATGTTGAAGT 57.020 25.926 0.00 0.00 39.58 3.01
425 1726 4.671377 TGCACTCAAATGTTGAAGTTCAC 58.329 39.130 4.68 1.95 39.58 3.18
427 1728 5.101628 GCACTCAAATGTTGAAGTTCACAA 58.898 37.500 4.68 0.00 39.58 3.33
428 1729 5.004726 GCACTCAAATGTTGAAGTTCACAAC 59.995 40.000 4.68 2.77 45.07 3.32
458 1759 5.799978 AGAATACTATATCTCTCGGGGGT 57.200 43.478 0.00 0.00 0.00 4.95
459 1760 5.511363 AGAATACTATATCTCTCGGGGGTG 58.489 45.833 0.00 0.00 0.00 4.61
461 1762 1.187087 CTATATCTCTCGGGGGTGGC 58.813 60.000 0.00 0.00 0.00 5.01
462 1763 0.252103 TATATCTCTCGGGGGTGGCC 60.252 60.000 0.00 0.00 0.00 5.36
475 1776 3.936203 TGGCCGTCCTGTGTGGTC 61.936 66.667 0.00 0.00 37.07 4.02
480 1781 2.342648 GTCCTGTGTGGTCGGGTC 59.657 66.667 0.00 0.00 37.07 4.46
481 1782 2.123208 TCCTGTGTGGTCGGGTCA 60.123 61.111 0.00 0.00 37.07 4.02
483 1784 2.030562 CTGTGTGGTCGGGTCACC 59.969 66.667 0.00 0.00 36.90 4.02
493 1794 4.035843 GGGTCACCGTGGAGATCT 57.964 61.111 0.00 0.00 0.00 2.75
494 1795 2.287829 GGGTCACCGTGGAGATCTT 58.712 57.895 0.00 0.00 0.00 2.40
495 1796 0.175989 GGGTCACCGTGGAGATCTTC 59.824 60.000 0.00 0.00 0.00 2.87
498 1799 0.041238 TCACCGTGGAGATCTTCCCT 59.959 55.000 0.00 0.00 46.19 4.20
499 1800 0.461961 CACCGTGGAGATCTTCCCTC 59.538 60.000 0.00 0.00 46.19 4.30
500 1801 0.688087 ACCGTGGAGATCTTCCCTCC 60.688 60.000 0.00 0.00 46.19 4.30
507 1812 0.397816 AGATCTTCCCTCCGTCCCTG 60.398 60.000 0.00 0.00 0.00 4.45
515 1820 1.280998 CCCTCCGTCCCTGTAAACATT 59.719 52.381 0.00 0.00 0.00 2.71
516 1821 2.356135 CCTCCGTCCCTGTAAACATTG 58.644 52.381 0.00 0.00 0.00 2.82
517 1822 1.737793 CTCCGTCCCTGTAAACATTGC 59.262 52.381 0.00 0.00 0.00 3.56
518 1823 1.072489 TCCGTCCCTGTAAACATTGCA 59.928 47.619 0.00 0.00 0.00 4.08
521 1826 2.664424 CGTCCCTGTAAACATTGCAACG 60.664 50.000 0.00 0.00 0.00 4.10
522 1827 2.550606 GTCCCTGTAAACATTGCAACGA 59.449 45.455 0.00 0.00 0.00 3.85
525 1830 4.279671 TCCCTGTAAACATTGCAACGAATT 59.720 37.500 0.00 0.00 0.00 2.17
535 1840 8.532977 AACATTGCAACGAATTAATAAAAGCT 57.467 26.923 0.00 0.00 0.00 3.74
538 1843 6.846870 TGCAACGAATTAATAAAAGCTTCG 57.153 33.333 0.00 0.00 43.10 3.79
543 1848 6.772078 ACGAATTAATAAAAGCTTCGTGAGG 58.228 36.000 10.20 0.00 46.98 3.86
544 1849 6.370718 ACGAATTAATAAAAGCTTCGTGAGGT 59.629 34.615 10.20 0.00 46.98 3.85
546 1851 7.216317 CGAATTAATAAAAGCTTCGTGAGGTTG 59.784 37.037 0.00 0.00 44.94 3.77
547 1852 6.870971 TTAATAAAAGCTTCGTGAGGTTGT 57.129 33.333 0.00 4.65 44.94 3.32
548 1853 5.358298 AATAAAAGCTTCGTGAGGTTGTC 57.642 39.130 0.00 0.00 44.94 3.18
551 1856 3.746045 AAGCTTCGTGAGGTTGTCTTA 57.254 42.857 0.00 0.00 44.07 2.10
552 1857 3.746045 AGCTTCGTGAGGTTGTCTTAA 57.254 42.857 0.00 0.00 30.17 1.85
553 1858 4.067972 AGCTTCGTGAGGTTGTCTTAAA 57.932 40.909 0.00 0.00 30.17 1.52
607 2468 3.189606 TGTCTATGTCTTTGGGGTGGAT 58.810 45.455 0.00 0.00 0.00 3.41
615 2481 0.037017 TTTGGGGTGGATGTACGTGG 59.963 55.000 0.00 0.00 0.00 4.94
625 2491 3.775866 TGGATGTACGTGGGGAAAATCTA 59.224 43.478 0.00 0.00 0.00 1.98
677 2551 0.108804 CACGTAGTCTGCCCGTCAAT 60.109 55.000 0.00 0.00 41.61 2.57
781 3631 2.546789 CACAAAACCAGACGTACCCTTC 59.453 50.000 0.00 0.00 0.00 3.46
815 3668 1.448540 CAAGGCGTAGTGCTCCCAG 60.449 63.158 0.00 0.00 45.43 4.45
900 3871 3.118454 GTGGGTCATGCACGTCGG 61.118 66.667 0.00 0.00 0.00 4.79
916 3887 2.165030 CGTCGGAAGTACTGGTGGTAAT 59.835 50.000 0.00 0.00 31.56 1.89
918 3889 4.142403 CGTCGGAAGTACTGGTGGTAATTA 60.142 45.833 0.00 0.00 38.57 1.40
919 3890 5.622007 CGTCGGAAGTACTGGTGGTAATTAA 60.622 44.000 0.00 0.00 38.57 1.40
921 3892 5.481473 TCGGAAGTACTGGTGGTAATTAACT 59.519 40.000 1.50 0.00 38.57 2.24
922 3893 6.014327 TCGGAAGTACTGGTGGTAATTAACTT 60.014 38.462 1.50 0.00 38.57 2.66
924 3895 6.596888 GGAAGTACTGGTGGTAATTAACTTCC 59.403 42.308 18.67 18.67 44.43 3.46
925 3896 6.058553 AGTACTGGTGGTAATTAACTTCCC 57.941 41.667 1.50 0.27 31.56 3.97
926 3897 3.946606 ACTGGTGGTAATTAACTTCCCG 58.053 45.455 1.50 4.10 0.00 5.14
927 3898 2.681344 CTGGTGGTAATTAACTTCCCGC 59.319 50.000 1.50 0.00 0.00 6.13
928 3899 2.019249 GGTGGTAATTAACTTCCCGCC 58.981 52.381 1.50 4.14 38.57 6.13
947 3918 5.937540 CCCGCCAAAATTAAAAGAATTTCCT 59.062 36.000 0.00 0.00 37.28 3.36
1002 3979 0.172803 GTAACTGACCCGCGATGACT 59.827 55.000 8.23 0.00 0.00 3.41
1023 4002 2.909662 TGTAATATCCGATGGGGCATCA 59.090 45.455 0.00 0.00 40.54 3.07
1037 4017 3.317993 GGGGCATCATGCTTTTAATACGT 59.682 43.478 10.11 0.00 44.28 3.57
1097 4078 7.606349 TCAATAGCATCTGTGTATCCATCTAC 58.394 38.462 0.00 0.00 0.00 2.59
1098 4079 7.452813 TCAATAGCATCTGTGTATCCATCTACT 59.547 37.037 0.00 0.00 0.00 2.57
1103 4084 7.122501 AGCATCTGTGTATCCATCTACTATCTG 59.877 40.741 0.00 0.00 0.00 2.90
1330 4338 0.254462 TTCCAGATGCGGGCATGTTA 59.746 50.000 11.44 0.00 36.70 2.41
1344 4352 4.951094 GGGCATGTTAACATTTACTACCCA 59.049 41.667 18.50 0.00 33.61 4.51
1431 4494 2.664402 AGAAGCTCTTTCTGGCCAAA 57.336 45.000 7.01 0.00 44.46 3.28
1463 4526 1.002403 TCCTTGCCCTGTATCCCGA 59.998 57.895 0.00 0.00 0.00 5.14
1467 4530 0.539986 TTGCCCTGTATCCCGAAGAC 59.460 55.000 0.00 0.00 0.00 3.01
1474 4537 4.283467 CCCTGTATCCCGAAGACAATATGA 59.717 45.833 0.00 0.00 0.00 2.15
1478 4541 7.122799 CCTGTATCCCGAAGACAATATGATCTA 59.877 40.741 0.00 0.00 0.00 1.98
1479 4542 8.595362 TGTATCCCGAAGACAATATGATCTAT 57.405 34.615 0.00 0.00 0.00 1.98
1480 4543 9.035890 TGTATCCCGAAGACAATATGATCTATT 57.964 33.333 0.00 0.00 0.00 1.73
1487 4550 7.526192 CGAAGACAATATGATCTATTCCCCTGT 60.526 40.741 0.00 0.00 0.00 4.00
1510 4577 0.874390 CCACTTCAACGTCACCATGG 59.126 55.000 11.19 11.19 0.00 3.66
1511 4578 0.238289 CACTTCAACGTCACCATGGC 59.762 55.000 13.04 0.00 0.00 4.40
1534 4601 5.059161 CACCAGGTATGAATGACACCTATG 58.941 45.833 0.00 0.00 40.77 2.23
1536 4603 5.608437 ACCAGGTATGAATGACACCTATGAT 59.392 40.000 0.00 0.00 40.77 2.45
1551 4618 4.831674 CTATGATATGTCATGGGAGGCA 57.168 45.455 14.66 0.00 44.62 4.75
1672 4743 2.225491 GGTTCTTGCACGAGTATTTGCA 59.775 45.455 0.00 0.00 46.93 4.08
1699 4770 1.707427 ACAAAGAGGCCATGAAGGAGT 59.293 47.619 5.01 0.00 41.22 3.85
1715 4792 3.299503 AGGAGTCAAATGCAAACCAGTT 58.700 40.909 0.00 0.00 30.71 3.16
1761 4841 0.387239 GTTCCATCCGTTTGCAGCAC 60.387 55.000 0.00 0.00 0.00 4.40
1791 4871 1.824852 GCCTTTGGGTTCATAGTTGGG 59.175 52.381 0.00 0.00 34.45 4.12
1826 4909 2.857152 GCTTCTCAGCACTATCAAGTCG 59.143 50.000 0.00 0.00 46.49 4.18
1848 4931 2.969262 AGGTCAAGGGCTCTCTAATAGC 59.031 50.000 0.00 0.00 39.33 2.97
1869 4952 4.021981 AGCAGTATCAAAGTTTTCTTGGCC 60.022 41.667 0.00 0.00 40.37 5.36
1937 5020 0.604511 GAACGGAATGTTGACGGGGT 60.605 55.000 0.00 0.00 42.09 4.95
2097 5184 6.045318 CCCATATGACGAGAATCCATACATC 58.955 44.000 3.65 0.00 0.00 3.06
2266 5534 5.849357 TTTCTTCTTATTTAACGCTCGCA 57.151 34.783 0.00 0.00 0.00 5.10
2267 5535 5.450376 TTCTTCTTATTTAACGCTCGCAG 57.550 39.130 0.00 0.00 0.00 5.18
2365 5759 5.353394 AATTGTATTCTCGCCCAAGACTA 57.647 39.130 0.00 0.00 0.00 2.59
2397 5791 6.128282 GCCTGTCATAGAAGTTCGAAAATCAA 60.128 38.462 0.00 0.00 0.00 2.57
2401 5798 7.655732 TGTCATAGAAGTTCGAAAATCAACAGA 59.344 33.333 0.00 0.00 0.00 3.41
2424 5822 7.116805 CAGACCTTTTTGCAGAATATTTTGACC 59.883 37.037 10.05 0.00 0.00 4.02
2490 5898 1.612950 CACATGGGTTACTTTGCAGCA 59.387 47.619 0.00 0.00 0.00 4.41
2513 5923 0.382515 CTGCGGTCTCTACTAGTGGC 59.617 60.000 5.39 0.00 0.00 5.01
2542 5952 3.724374 TGACAACGTTCTACTCCCTTTG 58.276 45.455 0.00 0.00 0.00 2.77
2560 5970 7.638444 TCCCTTTGGATGTGAATATAAGTTGA 58.362 34.615 0.00 0.00 35.03 3.18
2575 5985 3.409026 AGTTGAGCACAGGTTCTTAGG 57.591 47.619 0.00 0.00 0.00 2.69
2663 6099 8.146053 TCCTCCACTGAAGTTTCTAATCATTA 57.854 34.615 0.00 0.00 0.00 1.90
2665 6101 8.834465 CCTCCACTGAAGTTTCTAATCATTATG 58.166 37.037 0.00 0.00 0.00 1.90
2667 6103 9.739276 TCCACTGAAGTTTCTAATCATTATGTT 57.261 29.630 0.00 0.00 0.00 2.71
2693 6129 5.291128 GTGATATAGTACACGTGCTTTGCTT 59.709 40.000 17.22 0.00 0.00 3.91
2708 6144 4.148174 GCTTTGCTTGTTAAATTGACGACC 59.852 41.667 0.00 0.00 0.00 4.79
2715 6151 9.602568 TGCTTGTTAAATTGACGACCTAATATA 57.397 29.630 0.00 0.00 0.00 0.86
2721 6157 5.779529 ATTGACGACCTAATATACCGTGT 57.220 39.130 0.00 0.00 33.32 4.49
2732 6168 7.119846 ACCTAATATACCGTGTCCGACTTATAC 59.880 40.741 0.00 0.00 35.63 1.47
2734 6170 9.371136 CTAATATACCGTGTCCGACTTATACTA 57.629 37.037 0.00 0.00 35.63 1.82
2740 6176 2.945008 TGTCCGACTTATACTACCACCG 59.055 50.000 0.00 0.00 0.00 4.94
2744 6180 2.951642 CGACTTATACTACCACCGGGAA 59.048 50.000 6.32 0.00 38.05 3.97
2765 7470 8.347035 CGGGAATAAAGACTTAAGTTGTTTTCA 58.653 33.333 17.33 6.02 0.00 2.69
2803 8160 2.879103 ATGGGTCTGGTTTACCACAG 57.121 50.000 0.00 0.00 42.01 3.66
2814 9732 2.989166 GTTTACCACAGGTAGCACGTAC 59.011 50.000 0.00 0.00 39.52 3.67
2829 9747 5.997385 AGCACGTACCTTTAAAATGTTCTG 58.003 37.500 0.00 0.00 0.00 3.02
2898 10081 3.283751 CCTAGTCTAGATAGGATGGCCG 58.716 54.545 17.05 0.00 42.15 6.13
2906 10089 6.017192 TCTAGATAGGATGGCCGTTAATTCT 58.983 40.000 0.00 2.89 39.96 2.40
3015 10424 2.305927 TCCTAAAGGAGGTTGCAAGAGG 59.694 50.000 0.00 0.00 46.76 3.69
3025 10434 2.650778 GCAAGAGGTTTTGCGGGG 59.349 61.111 0.00 0.00 43.36 5.73
3128 10579 8.352201 AGAAAACATCACAATTCTTGATCGAAA 58.648 29.630 0.00 0.00 30.98 3.46
3243 10694 7.116075 TCTTGCGGTAGTAGGTTATACAAAT 57.884 36.000 0.00 0.00 0.00 2.32
3275 10726 2.422479 TGGAACTAGAAGACATCGTCGG 59.578 50.000 0.00 0.00 37.67 4.79
3294 10745 7.244898 TCGTCGGTCAATATGGTTTTTATTTG 58.755 34.615 0.00 0.00 0.00 2.32
3413 10864 2.749076 GTGTCAATAGCACCTGCATTCA 59.251 45.455 0.00 0.00 45.16 2.57
3470 10924 1.165270 GGTTATCGTTGCCAGTGCTT 58.835 50.000 0.00 0.00 38.71 3.91
3471 10925 1.135689 GGTTATCGTTGCCAGTGCTTG 60.136 52.381 0.00 0.00 38.71 4.01
3546 11002 6.686630 TGCTACAACTTCCATTACAAATTGG 58.313 36.000 0.00 0.00 0.00 3.16
3679 11144 6.066054 CAAAGAGTTGGTTTCCTCTCTTTC 57.934 41.667 22.23 3.00 44.36 2.62
3705 11171 5.269991 AGTGGAGTTATGCTAACTAGGTGA 58.730 41.667 8.09 0.00 0.00 4.02
3742 11208 5.178797 ACTACTCATACAACATGGTTCAGC 58.821 41.667 0.00 0.00 0.00 4.26
3865 12818 6.704310 AGTTTGGCTAATTCATGAAAATGCT 58.296 32.000 13.09 0.00 0.00 3.79
3906 12859 4.520492 CCTACTTGAGCTTTGTTGGTTGAT 59.480 41.667 0.00 0.00 0.00 2.57
3930 12911 2.990195 AGGCTGGATACCACCATCATA 58.010 47.619 0.00 0.00 39.34 2.15
4004 12989 7.821846 TGTGCAGAAAAACTTCCAAAACTTTAT 59.178 29.630 0.00 0.00 0.00 1.40
4056 13047 1.135689 CGCCTCATGGAAACGGAAAAG 60.136 52.381 0.00 0.00 34.57 2.27
4067 13059 7.056844 TGGAAACGGAAAAGGAATGTTATTT 57.943 32.000 0.00 0.00 0.00 1.40
4175 13170 3.256558 GAATGCAACATTTTGGAGAGCC 58.743 45.455 0.00 0.00 36.37 4.70
4202 13197 8.297426 CGTTGATGTATAGAGGTAGCTTCAATA 58.703 37.037 0.00 0.00 0.00 1.90
4260 13507 6.010219 AGCTTTGGTTCCACATTTACTACAT 58.990 36.000 0.00 0.00 0.00 2.29
4288 13546 5.130975 TCATTCATTGCTCACATACCTACCT 59.869 40.000 0.00 0.00 0.00 3.08
4291 13550 6.346477 TCATTGCTCACATACCTACCTATC 57.654 41.667 0.00 0.00 0.00 2.08
4298 13557 8.557450 TGCTCACATACCTACCTATCATAGATA 58.443 37.037 0.00 0.00 0.00 1.98
4390 13649 4.574599 AAACTGCACTCATGGAAAAGAC 57.425 40.909 0.00 0.00 0.00 3.01
4456 13715 4.664188 GCAGTCTTCTCTTAGGTAAGTCG 58.336 47.826 0.00 0.00 34.93 4.18
4492 13757 8.409358 ACTTACCTCAATAGAATTGCAACTTT 57.591 30.769 0.00 0.00 0.00 2.66
4596 13869 2.368875 ACTTGCGCTAGGTATAATGGCT 59.631 45.455 22.48 0.00 0.00 4.75
4704 13977 6.058183 ACTAATATCAGATGAAAGTGCCACC 58.942 40.000 0.00 0.00 0.00 4.61
4756 14029 9.884636 AGGAATTAAATAAAGCAACCAATAACC 57.115 29.630 0.00 0.00 0.00 2.85
4920 14193 5.852282 TCTTATCACAGATCATTCACCGA 57.148 39.130 0.00 0.00 0.00 4.69
4938 14211 3.243401 ACCGAAATGTGGTCAAGCTTTTC 60.243 43.478 0.00 0.00 33.35 2.29
5018 14291 6.201806 GGCACACTATATGATCTTCTTCACAC 59.798 42.308 0.00 0.00 0.00 3.82
5172 14445 6.876257 CCAATATACTCCTAGATGGCAACTTC 59.124 42.308 1.54 0.00 40.93 3.01
5173 14446 2.969628 ACTCCTAGATGGCAACTTCG 57.030 50.000 1.54 0.00 45.04 3.79
5347 14621 6.385759 TGGAATTATACTGGTGGAGCTTCTAA 59.614 38.462 0.00 0.00 0.00 2.10
5405 14679 6.311200 GGTATAAAACAAAGCTTGGCTCATTG 59.689 38.462 0.00 0.00 38.25 2.82
5427 14701 2.727123 TTGTGGAAGGACTTCAGCAA 57.273 45.000 13.51 13.18 41.20 3.91
5883 15161 8.438676 ACTATGCAATGTATGTAGTTCCTTTC 57.561 34.615 0.00 0.00 0.00 2.62
5932 15212 6.312918 TCCGAATTGTGTTTGTAGCTTATCTC 59.687 38.462 0.00 0.00 0.00 2.75
5935 15215 7.848051 CGAATTGTGTTTGTAGCTTATCTCATC 59.152 37.037 0.00 0.00 0.00 2.92
5953 15235 8.954950 ATCTCATCTGTGTAATTTCTTTCGAT 57.045 30.769 0.00 0.00 0.00 3.59
5955 15237 7.278646 TCTCATCTGTGTAATTTCTTTCGATGG 59.721 37.037 0.00 0.00 0.00 3.51
6063 15348 7.085116 CCGTATACATTTCTCACTACTCATCC 58.915 42.308 3.32 0.00 0.00 3.51
6065 15350 9.000486 CGTATACATTTCTCACTACTCATCCTA 58.000 37.037 3.32 0.00 0.00 2.94
6130 15417 2.001872 TCAACATGCAGCATAGACACG 58.998 47.619 7.82 0.00 0.00 4.49
6173 15466 1.342672 ACGTCACCCTTCACCCACTT 61.343 55.000 0.00 0.00 0.00 3.16
6241 15561 6.893020 AAATTCCTAATCACTCCCTACTGT 57.107 37.500 0.00 0.00 0.00 3.55
6270 15591 4.097361 GTCAGACCCGAAGCCCCC 62.097 72.222 0.00 0.00 0.00 5.40
6351 15672 2.066999 ACTTCCTCATCCCGCTCCC 61.067 63.158 0.00 0.00 0.00 4.30
6427 15751 4.363990 CAGCGACGGCACCAGACT 62.364 66.667 0.00 0.00 43.41 3.24
6428 15752 4.057428 AGCGACGGCACCAGACTC 62.057 66.667 0.00 0.00 43.41 3.36
6567 15891 3.785859 GGAGCAGGCCACCGATCA 61.786 66.667 5.01 0.00 0.00 2.92
6651 15978 2.366167 CCCCTCTGGTCCCTCCTG 60.366 72.222 0.00 0.00 37.07 3.86
6771 16099 2.795329 CATGCCTCCTTACTGTGGTTT 58.205 47.619 0.00 0.00 0.00 3.27
6792 16120 2.983192 TGGTTGGTCTGTTCTTCCCATA 59.017 45.455 0.00 0.00 0.00 2.74
6871 16203 1.745232 TTCTTCACGTTTGCTGGTGT 58.255 45.000 0.00 0.00 35.67 4.16
6905 16247 2.819608 CCTTCAATCATTGGGTCAACGT 59.180 45.455 0.00 0.00 0.00 3.99
6931 16273 7.129457 TCTGCAGTTCAAGGTAATATCATCT 57.871 36.000 14.67 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.036958 TGCAACTACCGATGGGATTG 57.963 50.000 0.00 3.47 36.97 2.67
6 7 2.172505 TCATGCAACTACCGATGGGATT 59.827 45.455 0.00 0.00 36.97 3.01
7 8 1.768275 TCATGCAACTACCGATGGGAT 59.232 47.619 0.00 0.00 36.97 3.85
8 9 1.138859 CTCATGCAACTACCGATGGGA 59.861 52.381 0.00 0.00 36.97 4.37
9 10 1.134401 ACTCATGCAACTACCGATGGG 60.134 52.381 0.00 0.00 40.11 4.00
10 11 2.315925 ACTCATGCAACTACCGATGG 57.684 50.000 0.00 0.00 0.00 3.51
11 12 5.741425 CAAATACTCATGCAACTACCGATG 58.259 41.667 0.00 0.00 0.00 3.84
12 13 4.273480 GCAAATACTCATGCAACTACCGAT 59.727 41.667 0.00 0.00 42.12 4.18
13 14 3.621268 GCAAATACTCATGCAACTACCGA 59.379 43.478 0.00 0.00 42.12 4.69
14 15 3.242739 GGCAAATACTCATGCAACTACCG 60.243 47.826 0.00 0.00 44.32 4.02
15 16 3.947834 AGGCAAATACTCATGCAACTACC 59.052 43.478 0.00 0.00 44.32 3.18
16 17 6.018669 GTCTAGGCAAATACTCATGCAACTAC 60.019 42.308 0.00 0.00 44.32 2.73
17 18 6.049149 GTCTAGGCAAATACTCATGCAACTA 58.951 40.000 0.00 0.00 44.32 2.24
18 19 4.878397 GTCTAGGCAAATACTCATGCAACT 59.122 41.667 0.00 0.00 44.32 3.16
19 20 4.260375 CGTCTAGGCAAATACTCATGCAAC 60.260 45.833 0.00 0.00 44.32 4.17
20 21 3.871006 CGTCTAGGCAAATACTCATGCAA 59.129 43.478 0.00 0.00 44.32 4.08
21 22 3.132111 TCGTCTAGGCAAATACTCATGCA 59.868 43.478 0.00 0.00 44.32 3.96
22 23 3.491267 GTCGTCTAGGCAAATACTCATGC 59.509 47.826 0.00 0.00 41.82 4.06
23 24 4.682787 TGTCGTCTAGGCAAATACTCATG 58.317 43.478 0.00 0.00 0.00 3.07
24 25 5.339008 TTGTCGTCTAGGCAAATACTCAT 57.661 39.130 0.00 0.00 42.17 2.90
25 26 4.794278 TTGTCGTCTAGGCAAATACTCA 57.206 40.909 0.00 0.00 42.17 3.41
32 33 1.876416 GCCACTTTGTCGTCTAGGCAA 60.876 52.381 0.00 0.00 43.63 4.52
33 34 0.320421 GCCACTTTGTCGTCTAGGCA 60.320 55.000 0.00 0.00 40.29 4.75
34 35 1.019805 GGCCACTTTGTCGTCTAGGC 61.020 60.000 0.00 0.00 39.86 3.93
35 36 0.320374 TGGCCACTTTGTCGTCTAGG 59.680 55.000 0.00 0.00 0.00 3.02
36 37 2.002586 CATGGCCACTTTGTCGTCTAG 58.997 52.381 8.16 0.00 0.00 2.43
37 38 1.338674 CCATGGCCACTTTGTCGTCTA 60.339 52.381 8.16 0.00 0.00 2.59
38 39 0.606401 CCATGGCCACTTTGTCGTCT 60.606 55.000 8.16 0.00 0.00 4.18
39 40 0.605319 TCCATGGCCACTTTGTCGTC 60.605 55.000 8.16 0.00 0.00 4.20
40 41 0.606401 CTCCATGGCCACTTTGTCGT 60.606 55.000 8.16 0.00 0.00 4.34
41 42 1.308069 CCTCCATGGCCACTTTGTCG 61.308 60.000 8.16 0.00 0.00 4.35
42 43 0.038166 TCCTCCATGGCCACTTTGTC 59.962 55.000 8.16 0.00 35.26 3.18
43 44 0.038744 CTCCTCCATGGCCACTTTGT 59.961 55.000 8.16 0.00 35.26 2.83
44 45 0.682209 CCTCCTCCATGGCCACTTTG 60.682 60.000 8.16 1.63 35.26 2.77
45 46 1.693640 CCTCCTCCATGGCCACTTT 59.306 57.895 8.16 0.00 35.26 2.66
46 47 2.988839 GCCTCCTCCATGGCCACTT 61.989 63.158 8.16 0.00 43.11 3.16
47 48 3.415087 GCCTCCTCCATGGCCACT 61.415 66.667 8.16 0.00 43.11 4.00
52 53 3.217626 GTTAGATTTGCCTCCTCCATGG 58.782 50.000 4.97 4.97 37.10 3.66
53 54 3.889815 TGTTAGATTTGCCTCCTCCATG 58.110 45.455 0.00 0.00 0.00 3.66
54 55 4.273318 GTTGTTAGATTTGCCTCCTCCAT 58.727 43.478 0.00 0.00 0.00 3.41
55 56 3.686016 GTTGTTAGATTTGCCTCCTCCA 58.314 45.455 0.00 0.00 0.00 3.86
56 57 2.678336 CGTTGTTAGATTTGCCTCCTCC 59.322 50.000 0.00 0.00 0.00 4.30
57 58 3.371285 GTCGTTGTTAGATTTGCCTCCTC 59.629 47.826 0.00 0.00 0.00 3.71
58 59 3.244422 TGTCGTTGTTAGATTTGCCTCCT 60.244 43.478 0.00 0.00 0.00 3.69
59 60 3.071479 TGTCGTTGTTAGATTTGCCTCC 58.929 45.455 0.00 0.00 0.00 4.30
60 61 4.742438 TTGTCGTTGTTAGATTTGCCTC 57.258 40.909 0.00 0.00 0.00 4.70
61 62 4.578928 ACTTTGTCGTTGTTAGATTTGCCT 59.421 37.500 0.00 0.00 0.00 4.75
62 63 4.675114 CACTTTGTCGTTGTTAGATTTGCC 59.325 41.667 0.00 0.00 0.00 4.52
63 64 4.675114 CCACTTTGTCGTTGTTAGATTTGC 59.325 41.667 0.00 0.00 0.00 3.68
64 65 4.675114 GCCACTTTGTCGTTGTTAGATTTG 59.325 41.667 0.00 0.00 0.00 2.32
65 66 4.261447 GGCCACTTTGTCGTTGTTAGATTT 60.261 41.667 0.00 0.00 0.00 2.17
66 67 3.252458 GGCCACTTTGTCGTTGTTAGATT 59.748 43.478 0.00 0.00 0.00 2.40
67 68 2.812011 GGCCACTTTGTCGTTGTTAGAT 59.188 45.455 0.00 0.00 0.00 1.98
68 69 2.215196 GGCCACTTTGTCGTTGTTAGA 58.785 47.619 0.00 0.00 0.00 2.10
69 70 1.944024 TGGCCACTTTGTCGTTGTTAG 59.056 47.619 0.00 0.00 0.00 2.34
70 71 2.039818 TGGCCACTTTGTCGTTGTTA 57.960 45.000 0.00 0.00 0.00 2.41
71 72 1.066908 CATGGCCACTTTGTCGTTGTT 59.933 47.619 8.16 0.00 0.00 2.83
72 73 0.667993 CATGGCCACTTTGTCGTTGT 59.332 50.000 8.16 0.00 0.00 3.32
73 74 0.950836 TCATGGCCACTTTGTCGTTG 59.049 50.000 8.16 0.00 0.00 4.10
74 75 1.238439 CTCATGGCCACTTTGTCGTT 58.762 50.000 8.16 0.00 0.00 3.85
75 76 0.108585 ACTCATGGCCACTTTGTCGT 59.891 50.000 8.16 2.06 0.00 4.34
76 77 2.093306 TACTCATGGCCACTTTGTCG 57.907 50.000 8.16 1.39 0.00 4.35
77 78 4.458989 TGAAATACTCATGGCCACTTTGTC 59.541 41.667 8.16 0.00 0.00 3.18
78 79 4.406456 TGAAATACTCATGGCCACTTTGT 58.594 39.130 8.16 7.72 0.00 2.83
79 80 5.163513 GTTGAAATACTCATGGCCACTTTG 58.836 41.667 8.16 2.00 32.78 2.77
80 81 4.832266 TGTTGAAATACTCATGGCCACTTT 59.168 37.500 8.16 0.94 32.78 2.66
81 82 4.406456 TGTTGAAATACTCATGGCCACTT 58.594 39.130 8.16 0.00 32.78 3.16
82 83 4.032960 TGTTGAAATACTCATGGCCACT 57.967 40.909 8.16 0.00 32.78 4.00
83 84 4.782019 TTGTTGAAATACTCATGGCCAC 57.218 40.909 8.16 0.00 32.78 5.01
84 85 4.220382 CCTTTGTTGAAATACTCATGGCCA 59.780 41.667 8.56 8.56 32.78 5.36
85 86 4.381932 CCCTTTGTTGAAATACTCATGGCC 60.382 45.833 0.00 0.00 32.78 5.36
86 87 4.747810 CCCTTTGTTGAAATACTCATGGC 58.252 43.478 0.00 0.00 32.78 4.40
87 88 4.381932 GGCCCTTTGTTGAAATACTCATGG 60.382 45.833 0.00 0.00 32.78 3.66
88 89 4.220382 TGGCCCTTTGTTGAAATACTCATG 59.780 41.667 0.00 0.00 32.78 3.07
89 90 4.415596 TGGCCCTTTGTTGAAATACTCAT 58.584 39.130 0.00 0.00 32.78 2.90
90 91 3.838565 TGGCCCTTTGTTGAAATACTCA 58.161 40.909 0.00 0.00 0.00 3.41
91 92 4.864704 TTGGCCCTTTGTTGAAATACTC 57.135 40.909 0.00 0.00 0.00 2.59
92 93 5.823861 ATTTGGCCCTTTGTTGAAATACT 57.176 34.783 0.00 0.00 0.00 2.12
93 94 7.875554 TCTTTATTTGGCCCTTTGTTGAAATAC 59.124 33.333 0.00 0.00 0.00 1.89
94 95 7.967908 TCTTTATTTGGCCCTTTGTTGAAATA 58.032 30.769 0.00 0.00 0.00 1.40
95 96 6.836242 TCTTTATTTGGCCCTTTGTTGAAAT 58.164 32.000 0.00 0.00 0.00 2.17
96 97 6.240549 TCTTTATTTGGCCCTTTGTTGAAA 57.759 33.333 0.00 0.00 0.00 2.69
97 98 5.878406 TCTTTATTTGGCCCTTTGTTGAA 57.122 34.783 0.00 0.00 0.00 2.69
98 99 5.878406 TTCTTTATTTGGCCCTTTGTTGA 57.122 34.783 0.00 0.00 0.00 3.18
99 100 6.936335 AGAATTCTTTATTTGGCCCTTTGTTG 59.064 34.615 0.88 0.00 0.00 3.33
100 101 7.016563 AGAGAATTCTTTATTTGGCCCTTTGTT 59.983 33.333 9.87 0.00 0.00 2.83
101 102 6.498303 AGAGAATTCTTTATTTGGCCCTTTGT 59.502 34.615 9.87 0.00 0.00 2.83
102 103 6.939622 AGAGAATTCTTTATTTGGCCCTTTG 58.060 36.000 9.87 0.00 0.00 2.77
103 104 6.956435 AGAGAGAATTCTTTATTTGGCCCTTT 59.044 34.615 9.87 0.00 32.53 3.11
104 105 6.379417 CAGAGAGAATTCTTTATTTGGCCCTT 59.621 38.462 9.87 0.00 32.53 3.95
105 106 5.890419 CAGAGAGAATTCTTTATTTGGCCCT 59.110 40.000 9.87 0.00 32.53 5.19
106 107 5.888161 TCAGAGAGAATTCTTTATTTGGCCC 59.112 40.000 9.87 0.00 32.53 5.80
107 108 7.121907 ACTTCAGAGAGAATTCTTTATTTGGCC 59.878 37.037 9.87 0.00 35.25 5.36
108 109 8.049655 ACTTCAGAGAGAATTCTTTATTTGGC 57.950 34.615 9.87 0.00 35.25 4.52
114 115 8.754080 CCCTTCTACTTCAGAGAGAATTCTTTA 58.246 37.037 9.87 0.00 35.25 1.85
115 116 7.619965 CCCTTCTACTTCAGAGAGAATTCTTT 58.380 38.462 9.87 3.31 35.25 2.52
116 117 6.351796 GCCCTTCTACTTCAGAGAGAATTCTT 60.352 42.308 9.87 0.00 35.25 2.52
117 118 5.128663 GCCCTTCTACTTCAGAGAGAATTCT 59.871 44.000 7.95 7.95 35.25 2.40
118 119 5.356426 GCCCTTCTACTTCAGAGAGAATTC 58.644 45.833 0.00 0.00 35.25 2.17
119 120 4.142049 CGCCCTTCTACTTCAGAGAGAATT 60.142 45.833 0.00 0.00 35.25 2.17
120 121 3.383185 CGCCCTTCTACTTCAGAGAGAAT 59.617 47.826 0.00 0.00 35.25 2.40
121 122 2.755655 CGCCCTTCTACTTCAGAGAGAA 59.244 50.000 0.00 0.00 33.83 2.87
122 123 2.370349 CGCCCTTCTACTTCAGAGAGA 58.630 52.381 0.00 0.00 33.83 3.10
123 124 1.407258 CCGCCCTTCTACTTCAGAGAG 59.593 57.143 0.00 0.00 33.83 3.20
124 125 1.475403 CCGCCCTTCTACTTCAGAGA 58.525 55.000 0.00 0.00 33.83 3.10
125 126 0.179097 GCCGCCCTTCTACTTCAGAG 60.179 60.000 0.00 0.00 33.83 3.35
126 127 0.902984 TGCCGCCCTTCTACTTCAGA 60.903 55.000 0.00 0.00 0.00 3.27
127 128 0.036388 TTGCCGCCCTTCTACTTCAG 60.036 55.000 0.00 0.00 0.00 3.02
128 129 0.398696 TTTGCCGCCCTTCTACTTCA 59.601 50.000 0.00 0.00 0.00 3.02
129 130 0.803117 GTTTGCCGCCCTTCTACTTC 59.197 55.000 0.00 0.00 0.00 3.01
130 131 0.608308 GGTTTGCCGCCCTTCTACTT 60.608 55.000 0.00 0.00 0.00 2.24
131 132 1.002502 GGTTTGCCGCCCTTCTACT 60.003 57.895 0.00 0.00 0.00 2.57
132 133 2.044555 GGGTTTGCCGCCCTTCTAC 61.045 63.158 0.00 0.00 42.81 2.59
141 142 1.014352 CCTTATCTTCGGGTTTGCCG 58.986 55.000 0.00 0.00 34.97 5.69
168 169 2.510906 CAATGGACCTAGGGGCGG 59.489 66.667 14.81 0.00 35.63 6.13
171 172 1.289244 AAGCCCAATGGACCTAGGGG 61.289 60.000 14.81 12.71 41.75 4.79
205 206 4.142966 GGGCTGTTCAACGTTCAAGTATAC 60.143 45.833 0.00 0.00 0.00 1.47
213 214 1.282875 GCTGGGCTGTTCAACGTTC 59.717 57.895 0.00 0.00 0.00 3.95
268 274 1.317431 GCAATCTGAGGCCACATGCA 61.317 55.000 18.70 0.00 43.89 3.96
270 276 1.134367 CTTGCAATCTGAGGCCACATG 59.866 52.381 5.01 1.01 0.00 3.21
271 277 1.471119 CTTGCAATCTGAGGCCACAT 58.529 50.000 5.01 0.00 0.00 3.21
280 1581 1.135199 GCACCATCACCTTGCAATCTG 60.135 52.381 0.00 0.00 36.22 2.90
290 1591 0.036732 TCAAGTCCTGCACCATCACC 59.963 55.000 0.00 0.00 0.00 4.02
291 1592 1.808945 CTTCAAGTCCTGCACCATCAC 59.191 52.381 0.00 0.00 0.00 3.06
292 1593 1.699083 TCTTCAAGTCCTGCACCATCA 59.301 47.619 0.00 0.00 0.00 3.07
293 1594 2.479566 TCTTCAAGTCCTGCACCATC 57.520 50.000 0.00 0.00 0.00 3.51
294 1595 2.553904 CCTTCTTCAAGTCCTGCACCAT 60.554 50.000 0.00 0.00 0.00 3.55
297 1598 2.550830 TCCTTCTTCAAGTCCTGCAC 57.449 50.000 0.00 0.00 0.00 4.57
298 1599 4.287067 AGTTATCCTTCTTCAAGTCCTGCA 59.713 41.667 0.00 0.00 0.00 4.41
299 1600 4.837972 AGTTATCCTTCTTCAAGTCCTGC 58.162 43.478 0.00 0.00 0.00 4.85
300 1601 6.293004 AGAGTTATCCTTCTTCAAGTCCTG 57.707 41.667 0.00 0.00 0.00 3.86
302 1603 8.315482 ACTAAAGAGTTATCCTTCTTCAAGTCC 58.685 37.037 0.00 0.00 28.61 3.85
303 1604 9.713713 AACTAAAGAGTTATCCTTCTTCAAGTC 57.286 33.333 0.00 0.00 44.36 3.01
308 1609 9.085250 CCGTAAACTAAAGAGTTATCCTTCTTC 57.915 37.037 0.00 0.00 45.50 2.87
309 1610 8.810041 TCCGTAAACTAAAGAGTTATCCTTCTT 58.190 33.333 0.00 0.00 45.50 2.52
311 1612 7.222417 GCTCCGTAAACTAAAGAGTTATCCTTC 59.778 40.741 0.00 0.00 45.50 3.46
312 1613 7.040494 GCTCCGTAAACTAAAGAGTTATCCTT 58.960 38.462 0.00 0.00 45.50 3.36
314 1615 6.571605 AGCTCCGTAAACTAAAGAGTTATCC 58.428 40.000 0.00 0.00 45.50 2.59
316 1617 8.910944 TGATAGCTCCGTAAACTAAAGAGTTAT 58.089 33.333 0.00 0.00 45.50 1.89
319 1620 6.770746 TGATAGCTCCGTAAACTAAAGAGT 57.229 37.500 0.00 0.00 37.59 3.24
320 1621 8.350722 TGTATGATAGCTCCGTAAACTAAAGAG 58.649 37.037 0.00 0.00 0.00 2.85
321 1622 8.229253 TGTATGATAGCTCCGTAAACTAAAGA 57.771 34.615 0.00 0.00 0.00 2.52
322 1623 8.916654 CATGTATGATAGCTCCGTAAACTAAAG 58.083 37.037 0.00 0.00 0.00 1.85
323 1624 8.635328 TCATGTATGATAGCTCCGTAAACTAAA 58.365 33.333 0.00 0.00 0.00 1.85
324 1625 8.173542 TCATGTATGATAGCTCCGTAAACTAA 57.826 34.615 0.00 0.00 0.00 2.24
325 1626 7.754851 TCATGTATGATAGCTCCGTAAACTA 57.245 36.000 0.00 0.00 0.00 2.24
326 1627 6.650427 TCATGTATGATAGCTCCGTAAACT 57.350 37.500 0.00 0.00 0.00 2.66
328 1629 9.990360 TTATTTCATGTATGATAGCTCCGTAAA 57.010 29.630 0.00 0.00 36.56 2.01
329 1630 9.419297 GTTATTTCATGTATGATAGCTCCGTAA 57.581 33.333 0.00 0.00 36.56 3.18
332 1633 7.814587 TGAGTTATTTCATGTATGATAGCTCCG 59.185 37.037 12.65 0.00 36.56 4.63
342 1643 9.201127 CGATGAGTGATGAGTTATTTCATGTAT 57.799 33.333 0.00 0.00 37.90 2.29
344 1645 6.481313 CCGATGAGTGATGAGTTATTTCATGT 59.519 38.462 0.00 0.00 37.90 3.21
345 1646 6.703165 TCCGATGAGTGATGAGTTATTTCATG 59.297 38.462 0.00 0.00 37.90 3.07
346 1647 6.820335 TCCGATGAGTGATGAGTTATTTCAT 58.180 36.000 0.00 0.00 40.40 2.57
347 1648 6.220726 TCCGATGAGTGATGAGTTATTTCA 57.779 37.500 0.00 0.00 0.00 2.69
354 1655 3.624861 GCAAAATCCGATGAGTGATGAGT 59.375 43.478 0.00 0.00 0.00 3.41
355 1656 3.875727 AGCAAAATCCGATGAGTGATGAG 59.124 43.478 0.00 0.00 0.00 2.90
356 1657 3.877559 AGCAAAATCCGATGAGTGATGA 58.122 40.909 0.00 0.00 0.00 2.92
357 1658 4.627611 AAGCAAAATCCGATGAGTGATG 57.372 40.909 0.00 0.00 0.00 3.07
359 1660 5.221224 ACAAAAAGCAAAATCCGATGAGTGA 60.221 36.000 0.00 0.00 0.00 3.41
360 1661 4.984161 ACAAAAAGCAAAATCCGATGAGTG 59.016 37.500 0.00 0.00 0.00 3.51
361 1662 5.200368 ACAAAAAGCAAAATCCGATGAGT 57.800 34.783 0.00 0.00 0.00 3.41
362 1663 7.636259 TTTACAAAAAGCAAAATCCGATGAG 57.364 32.000 0.00 0.00 0.00 2.90
367 1668 9.376171 GGTTAAATTTACAAAAAGCAAAATCCG 57.624 29.630 0.00 0.00 0.00 4.18
390 1691 9.723601 AACATTTGAGTGCATAAATTAATGGTT 57.276 25.926 0.00 0.00 0.00 3.67
391 1692 9.153721 CAACATTTGAGTGCATAAATTAATGGT 57.846 29.630 0.00 0.00 0.00 3.55
392 1693 9.368674 TCAACATTTGAGTGCATAAATTAATGG 57.631 29.630 0.00 0.00 34.08 3.16
396 1697 9.979578 AACTTCAACATTTGAGTGCATAAATTA 57.020 25.926 0.00 0.00 41.38 1.40
399 1700 7.434897 GTGAACTTCAACATTTGAGTGCATAAA 59.565 33.333 0.00 0.00 41.38 1.40
403 1704 4.157472 TGTGAACTTCAACATTTGAGTGCA 59.843 37.500 0.00 0.00 41.38 4.57
404 1705 4.671377 TGTGAACTTCAACATTTGAGTGC 58.329 39.130 0.00 0.00 41.38 4.40
405 1706 6.324819 AGTTGTGAACTTCAACATTTGAGTG 58.675 36.000 10.59 0.00 44.97 3.51
406 1707 6.515272 AGTTGTGAACTTCAACATTTGAGT 57.485 33.333 10.59 0.00 44.97 3.41
432 1733 6.437793 CCCCCGAGAGATATAGTATTCTTTGT 59.562 42.308 0.00 0.00 0.00 2.83
434 1735 6.437793 CACCCCCGAGAGATATAGTATTCTTT 59.562 42.308 0.00 0.00 0.00 2.52
436 1737 5.511363 CACCCCCGAGAGATATAGTATTCT 58.489 45.833 0.00 0.00 0.00 2.40
438 1739 4.611367 CCACCCCCGAGAGATATAGTATT 58.389 47.826 0.00 0.00 0.00 1.89
442 1743 1.187087 GCCACCCCCGAGAGATATAG 58.813 60.000 0.00 0.00 0.00 1.31
443 1744 0.252103 GGCCACCCCCGAGAGATATA 60.252 60.000 0.00 0.00 0.00 0.86
444 1745 1.536662 GGCCACCCCCGAGAGATAT 60.537 63.158 0.00 0.00 0.00 1.63
445 1746 2.122989 GGCCACCCCCGAGAGATA 60.123 66.667 0.00 0.00 0.00 1.98
458 1759 3.936203 GACCACACAGGACGGCCA 61.936 66.667 11.69 0.00 41.22 5.36
464 1765 2.123208 TGACCCGACCACACAGGA 60.123 61.111 0.00 0.00 41.22 3.86
465 1766 2.030562 GTGACCCGACCACACAGG 59.969 66.667 0.00 0.00 45.67 4.00
466 1767 2.030562 GGTGACCCGACCACACAG 59.969 66.667 0.00 0.00 35.88 3.66
478 1779 3.742983 GGAAGATCTCCACGGTGAC 57.257 57.895 10.28 0.00 44.67 3.67
486 1787 1.116536 GGGACGGAGGGAAGATCTCC 61.117 65.000 0.00 0.00 45.46 3.71
487 1788 0.105913 AGGGACGGAGGGAAGATCTC 60.106 60.000 0.00 0.00 0.00 2.75
488 1789 0.397816 CAGGGACGGAGGGAAGATCT 60.398 60.000 0.00 0.00 0.00 2.75
490 1791 0.635009 TACAGGGACGGAGGGAAGAT 59.365 55.000 0.00 0.00 0.00 2.40
491 1792 0.410663 TTACAGGGACGGAGGGAAGA 59.589 55.000 0.00 0.00 0.00 2.87
492 1793 1.066358 GTTTACAGGGACGGAGGGAAG 60.066 57.143 0.00 0.00 0.00 3.46
493 1794 0.978907 GTTTACAGGGACGGAGGGAA 59.021 55.000 0.00 0.00 0.00 3.97
494 1795 0.178926 TGTTTACAGGGACGGAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
495 1796 0.909623 ATGTTTACAGGGACGGAGGG 59.090 55.000 0.00 0.00 0.00 4.30
498 1799 1.072489 TGCAATGTTTACAGGGACGGA 59.928 47.619 0.00 0.00 0.00 4.69
499 1800 1.529226 TGCAATGTTTACAGGGACGG 58.471 50.000 0.00 0.00 0.00 4.79
500 1801 2.664424 CGTTGCAATGTTTACAGGGACG 60.664 50.000 10.65 0.00 0.00 4.79
501 1802 2.550606 TCGTTGCAATGTTTACAGGGAC 59.449 45.455 17.94 0.00 0.00 4.46
502 1803 2.852449 TCGTTGCAATGTTTACAGGGA 58.148 42.857 17.94 0.00 0.00 4.20
515 1820 6.846870 CGAAGCTTTTATTAATTCGTTGCA 57.153 33.333 0.00 0.00 38.29 4.08
521 1826 8.021396 ACAACCTCACGAAGCTTTTATTAATTC 58.979 33.333 0.00 0.00 0.00 2.17
522 1827 7.882179 ACAACCTCACGAAGCTTTTATTAATT 58.118 30.769 0.00 0.00 0.00 1.40
525 1830 6.228258 AGACAACCTCACGAAGCTTTTATTA 58.772 36.000 0.00 0.00 0.00 0.98
532 1837 3.746045 TTAAGACAACCTCACGAAGCT 57.254 42.857 0.00 0.00 0.00 3.74
533 1838 4.806342 TTTTAAGACAACCTCACGAAGC 57.194 40.909 0.00 0.00 0.00 3.86
552 1857 5.321927 CCCTTCACATACCACTACCTTTTT 58.678 41.667 0.00 0.00 0.00 1.94
553 1858 4.809691 GCCCTTCACATACCACTACCTTTT 60.810 45.833 0.00 0.00 0.00 2.27
556 2417 1.838077 GCCCTTCACATACCACTACCT 59.162 52.381 0.00 0.00 0.00 3.08
580 2441 2.509548 CCCAAAGACATAGACATGGGGA 59.490 50.000 0.00 0.00 43.06 4.81
581 2442 2.936202 CCCAAAGACATAGACATGGGG 58.064 52.381 0.00 0.00 43.06 4.96
583 2444 3.282021 CACCCCAAAGACATAGACATGG 58.718 50.000 0.00 0.00 36.39 3.66
607 2468 6.795144 TTCTATAGATTTTCCCCACGTACA 57.205 37.500 2.58 0.00 0.00 2.90
641 2512 0.108520 GTGCCAATCGACGGGTCTAA 60.109 55.000 4.94 0.00 0.00 2.10
677 2551 0.396417 CAATTAATCCCCGGGCCACA 60.396 55.000 17.73 0.00 0.00 4.17
745 3595 0.110486 TTGTGGCCAAGGAGAAGGAC 59.890 55.000 7.24 0.00 0.00 3.85
781 3631 3.364167 CGCCTTGCAAATTTTCAATGGTG 60.364 43.478 3.70 9.87 0.00 4.17
815 3668 1.649664 CTGATATGATGCTAGCCGCC 58.350 55.000 13.29 1.55 38.05 6.13
884 3855 2.779951 CTTCCGACGTGCATGACCCA 62.780 60.000 14.17 0.00 0.00 4.51
900 3871 6.596888 GGGAAGTTAATTACCACCAGTACTTC 59.403 42.308 11.45 11.45 42.26 3.01
916 3887 7.052142 TCTTTTAATTTTGGCGGGAAGTTAA 57.948 32.000 0.00 0.00 0.00 2.01
918 3889 5.538849 TCTTTTAATTTTGGCGGGAAGTT 57.461 34.783 0.00 0.00 0.00 2.66
919 3890 5.538849 TTCTTTTAATTTTGGCGGGAAGT 57.461 34.783 0.00 0.00 0.00 3.01
921 3892 6.428465 GGAAATTCTTTTAATTTTGGCGGGAA 59.572 34.615 0.00 0.00 30.68 3.97
922 3893 5.935206 GGAAATTCTTTTAATTTTGGCGGGA 59.065 36.000 0.00 0.00 30.68 5.14
924 3895 6.092122 GGAGGAAATTCTTTTAATTTTGGCGG 59.908 38.462 0.00 0.00 30.68 6.13
925 3896 6.183360 CGGAGGAAATTCTTTTAATTTTGGCG 60.183 38.462 0.00 0.00 30.68 5.69
926 3897 7.060600 CGGAGGAAATTCTTTTAATTTTGGC 57.939 36.000 0.00 0.00 30.68 4.52
995 3971 4.424626 CCCATCGGATATTACAGTCATCG 58.575 47.826 0.00 0.00 0.00 3.84
1002 3979 2.909662 TGATGCCCCATCGGATATTACA 59.090 45.455 0.00 0.00 43.14 2.41
1023 4002 5.612492 CGCATCGATCACGTATTAAAAGCAT 60.612 40.000 8.78 0.00 40.69 3.79
1037 4017 0.030773 GCCTCTGTACGCATCGATCA 59.969 55.000 0.00 0.00 0.00 2.92
1060 4040 7.380870 CACAGATGCTATTGAGAGTGTATGTAC 59.619 40.741 0.00 0.00 0.00 2.90
1097 4078 8.708378 TGGCCATATAGGATCAATAACAGATAG 58.292 37.037 0.00 0.00 41.22 2.08
1098 4079 8.486210 GTGGCCATATAGGATCAATAACAGATA 58.514 37.037 9.72 0.00 41.22 1.98
1103 4084 5.815581 TGGTGGCCATATAGGATCAATAAC 58.184 41.667 9.72 0.00 41.22 1.89
1463 4526 7.639062 ACAGGGGAATAGATCATATTGTCTT 57.361 36.000 0.00 0.00 0.00 3.01
1467 4530 8.551440 TGGATAACAGGGGAATAGATCATATTG 58.449 37.037 0.00 0.00 0.00 1.90
1474 4537 5.911178 TGAAGTGGATAACAGGGGAATAGAT 59.089 40.000 0.00 0.00 0.00 1.98
1478 4541 4.600062 GTTGAAGTGGATAACAGGGGAAT 58.400 43.478 0.00 0.00 0.00 3.01
1479 4542 3.558321 CGTTGAAGTGGATAACAGGGGAA 60.558 47.826 0.00 0.00 0.00 3.97
1480 4543 2.027561 CGTTGAAGTGGATAACAGGGGA 60.028 50.000 0.00 0.00 0.00 4.81
1487 4550 3.755112 TGGTGACGTTGAAGTGGATAA 57.245 42.857 0.00 0.00 0.00 1.75
1510 4577 2.017049 GGTGTCATTCATACCTGGTGC 58.983 52.381 10.23 0.00 0.00 5.01
1511 4578 3.634397 AGGTGTCATTCATACCTGGTG 57.366 47.619 10.23 0.00 42.95 4.17
1534 4601 1.701847 AGGTGCCTCCCATGACATATC 59.298 52.381 0.00 0.00 36.75 1.63
1536 4603 0.839277 CAGGTGCCTCCCATGACATA 59.161 55.000 0.00 0.00 36.75 2.29
1572 4639 3.303395 CGAACAAGCCTGTTTCTTCAGAC 60.303 47.826 1.46 0.00 45.98 3.51
1672 4743 4.574674 TCATGGCCTCTTTGTTGTCTAT 57.425 40.909 3.32 0.00 0.00 1.98
1699 4770 4.379394 GCTATCGAACTGGTTTGCATTTGA 60.379 41.667 0.00 0.00 0.00 2.69
1761 4841 3.777925 CCAAAGGCTCGCACGTCG 61.778 66.667 0.00 0.00 40.15 5.12
1806 4886 4.350346 CTCGACTTGATAGTGCTGAGAAG 58.650 47.826 0.00 0.00 33.84 2.85
1807 4887 3.129462 CCTCGACTTGATAGTGCTGAGAA 59.871 47.826 0.00 0.00 33.84 2.87
1826 4909 3.006430 GCTATTAGAGAGCCCTTGACCTC 59.994 52.174 0.00 0.00 33.60 3.85
1848 4931 4.215399 TCGGCCAAGAAAACTTTGATACTG 59.785 41.667 2.24 0.00 0.00 2.74
1937 5020 4.699735 CCGTGATGGCCATGCTAAAATATA 59.300 41.667 26.56 0.00 0.00 0.86
2074 5161 6.633856 TGATGTATGGATTCTCGTCATATGG 58.366 40.000 2.13 0.00 0.00 2.74
2097 5184 1.003355 ACCTTGACAGCCGTCCATG 60.003 57.895 0.00 0.00 41.85 3.66
2253 5521 4.419522 AAAATGACTGCGAGCGTTAAAT 57.580 36.364 0.00 0.00 0.00 1.40
2281 5559 3.169355 AGGATGCGCAATGATTTTTCC 57.831 42.857 17.11 14.75 0.00 3.13
2293 5573 7.668525 AGTAAATATTTTACCTAGGATGCGC 57.331 36.000 17.98 0.00 0.00 6.09
2339 5624 6.097839 AGTCTTGGGCGAGAATACAATTAGTA 59.902 38.462 0.00 0.00 37.06 1.82
2365 5759 6.206634 TCGAACTTCTATGACAGGCAATTTTT 59.793 34.615 0.00 0.00 0.00 1.94
2397 5791 7.653311 GTCAAAATATTCTGCAAAAAGGTCTGT 59.347 33.333 0.00 0.00 0.00 3.41
2401 5798 6.183361 TGGGTCAAAATATTCTGCAAAAAGGT 60.183 34.615 0.00 0.00 0.00 3.50
2424 5822 6.370442 TCGAAAACAGTACTATGTCCAAATGG 59.630 38.462 0.00 0.00 31.50 3.16
2513 5923 5.164080 GGAGTAGAACGTTGTCAAGAATTCG 60.164 44.000 5.00 0.00 0.00 3.34
2542 5952 6.017605 CCTGTGCTCAACTTATATTCACATCC 60.018 42.308 0.00 0.00 33.31 3.51
2560 5970 3.391296 TCAAAGACCTAAGAACCTGTGCT 59.609 43.478 0.00 0.00 0.00 4.40
2575 5985 5.985781 TGTTTCGCTAGTCAAATCAAAGAC 58.014 37.500 0.00 0.00 35.02 3.01
2620 6054 9.607333 AGTGGAGGATGATTCTAAAGATGTATA 57.393 33.333 0.00 0.00 0.00 1.47
2621 6055 8.373981 CAGTGGAGGATGATTCTAAAGATGTAT 58.626 37.037 0.00 0.00 0.00 2.29
2630 6066 6.441924 AGAAACTTCAGTGGAGGATGATTCTA 59.558 38.462 2.79 0.00 33.13 2.10
2634 6070 6.627087 TTAGAAACTTCAGTGGAGGATGAT 57.373 37.500 2.79 0.00 0.00 2.45
2640 6076 9.388506 ACATAATGATTAGAAACTTCAGTGGAG 57.611 33.333 0.00 0.00 0.00 3.86
2663 6099 6.338146 AGCACGTGTACTATATCACAAACAT 58.662 36.000 18.38 0.00 34.66 2.71
2665 6101 6.642683 AAGCACGTGTACTATATCACAAAC 57.357 37.500 18.38 0.00 34.66 2.93
2667 6103 5.062934 GCAAAGCACGTGTACTATATCACAA 59.937 40.000 18.38 0.00 34.66 3.33
2683 6119 4.737765 TCGTCAATTTAACAAGCAAAGCAC 59.262 37.500 0.00 0.00 0.00 4.40
2693 6129 8.196771 ACGGTATATTAGGTCGTCAATTTAACA 58.803 33.333 0.00 0.00 0.00 2.41
2708 6144 8.261492 AGTATAAGTCGGACACGGTATATTAG 57.739 38.462 11.27 0.00 41.39 1.73
2715 6151 2.945668 GGTAGTATAAGTCGGACACGGT 59.054 50.000 11.27 0.00 41.39 4.83
2721 6157 2.575532 CCGGTGGTAGTATAAGTCGGA 58.424 52.381 0.00 0.00 38.64 4.55
2732 6168 4.482952 AAGTCTTTATTCCCGGTGGTAG 57.517 45.455 0.00 0.00 0.00 3.18
2734 6170 4.287845 ACTTAAGTCTTTATTCCCGGTGGT 59.712 41.667 1.12 0.00 0.00 4.16
2803 8160 5.868043 ACATTTTAAAGGTACGTGCTACC 57.132 39.130 3.01 0.00 45.19 3.18
2814 9732 5.904362 AGCTAGCCAGAACATTTTAAAGG 57.096 39.130 12.13 0.00 0.00 3.11
2869 9792 7.092174 CCATCCTATCTAGACTAGGGATACACT 60.092 44.444 19.68 0.00 37.05 3.55
2870 9793 7.057894 CCATCCTATCTAGACTAGGGATACAC 58.942 46.154 19.68 0.00 37.05 2.90
2877 9800 3.283751 CGGCCATCCTATCTAGACTAGG 58.716 54.545 16.34 16.34 37.66 3.02
2898 10081 7.491696 AGTTACGTTAGGAGCATGAGAATTAAC 59.508 37.037 0.00 0.00 0.00 2.01
2906 10089 4.461431 TGAGAAGTTACGTTAGGAGCATGA 59.539 41.667 0.00 0.00 0.00 3.07
2959 10365 0.376152 GCTGCAGATGGAATGACACG 59.624 55.000 20.43 0.00 0.00 4.49
3025 10434 4.937201 AAGGAAAGGGAATGTTTGTGTC 57.063 40.909 0.00 0.00 0.00 3.67
3243 10694 2.195727 TCTAGTTCCATGTGCCCATCA 58.804 47.619 0.00 0.00 0.00 3.07
3294 10745 6.754209 ACATCTTCATGTCGTATTCTTCAGAC 59.246 38.462 0.00 0.00 39.15 3.51
3470 10924 3.052262 TGGATTTCCCTCATAATTGGGCA 60.052 43.478 0.00 0.00 43.04 5.36
3471 10925 3.575805 TGGATTTCCCTCATAATTGGGC 58.424 45.455 0.00 0.00 43.04 5.36
3522 10976 6.686630 CCAATTTGTAATGGAAGTTGTAGCA 58.313 36.000 0.00 0.00 39.12 3.49
3614 11078 2.820787 TGCAACACATGAATCATGCTCA 59.179 40.909 21.92 10.36 44.80 4.26
3615 11079 3.497297 TGCAACACATGAATCATGCTC 57.503 42.857 21.92 8.14 44.80 4.26
3679 11144 7.068348 TCACCTAGTTAGCATAACTCCACTAAG 59.932 40.741 5.50 0.00 0.00 2.18
3705 11171 8.306313 TGTATGAGTAGTATGACTTGGACATT 57.694 34.615 0.00 0.00 0.00 2.71
3807 12740 6.293626 GGTGCCTAGTCATTTAGCATAATGTG 60.294 42.308 9.69 2.09 36.95 3.21
3826 12771 2.039084 CCAAACTCTAGTTCTGGTGCCT 59.961 50.000 12.27 0.00 37.25 4.75
3827 12772 2.427506 CCAAACTCTAGTTCTGGTGCC 58.572 52.381 12.27 0.00 37.25 5.01
3865 12818 8.325787 TCAAGTAGGGATCAAGCACTATTTTTA 58.674 33.333 0.00 0.00 0.00 1.52
3941 12922 7.992008 ACAAAAGAAAAATGGTTCTACGAGAA 58.008 30.769 0.00 0.00 36.84 2.87
3945 12926 8.628882 AAAGACAAAAGAAAAATGGTTCTACG 57.371 30.769 0.00 0.00 36.84 3.51
4004 12989 3.181477 GCTTATGTGTATGCCATTGCCAA 60.181 43.478 0.00 0.00 36.33 4.52
4154 13149 3.256558 GGCTCTCCAAAATGTTGCATTC 58.743 45.455 0.00 0.00 33.01 2.67
4175 13170 5.009710 TGAAGCTACCTCTATACATCAACGG 59.990 44.000 0.00 0.00 0.00 4.44
4202 13197 3.073062 GGCCTACCATTCATCCTACACAT 59.927 47.826 0.00 0.00 35.26 3.21
4260 13507 4.037089 GGTATGTGAGCAATGAATGATGCA 59.963 41.667 0.00 0.00 44.95 3.96
4291 13550 8.185003 TCAACAAACACTCGTTGATATCTATG 57.815 34.615 3.98 2.04 44.88 2.23
4351 13610 0.179067 TTTCGCAACTATAGCCCCCG 60.179 55.000 0.00 0.00 0.00 5.73
4390 13649 8.526147 ACACATCTCCTTTTTATTGGATCAAAG 58.474 33.333 0.00 0.00 0.00 2.77
4596 13869 4.321718 CTCTCTTCCACTTGCTGATGAAA 58.678 43.478 0.00 0.00 0.00 2.69
4704 13977 9.494271 TCCAAGGAGAATATCTTCATTTTATCG 57.506 33.333 0.00 0.00 33.56 2.92
4756 14029 3.185188 CCAAGAACACGACTGACATCAAG 59.815 47.826 0.00 0.00 0.00 3.02
4920 14193 2.693074 ACCGAAAAGCTTGACCACATTT 59.307 40.909 0.00 0.00 0.00 2.32
4938 14211 2.198406 TCTGTTTCGAGACAACAACCG 58.802 47.619 10.29 0.00 33.74 4.44
5172 14445 2.457366 AGTCAGAAACCTTGGTAGCG 57.543 50.000 0.00 0.00 0.00 4.26
5173 14446 3.253432 CCAAAGTCAGAAACCTTGGTAGC 59.747 47.826 0.00 0.00 42.37 3.58
5405 14679 1.268079 GCTGAAGTCCTTCCACAAAGC 59.732 52.381 4.67 3.16 38.77 3.51
5883 15161 3.558931 TTACATGGCATACTCCCACTG 57.441 47.619 0.00 0.00 34.68 3.66
6130 15417 3.003068 GCAGTATGTGATTGGATGCTGAC 59.997 47.826 0.00 0.00 39.31 3.51
6173 15466 2.180276 GTCAGACTTGAGGAGGGCTTA 58.820 52.381 0.00 0.00 32.98 3.09
6221 15541 4.287552 GGACAGTAGGGAGTGATTAGGAA 58.712 47.826 0.00 0.00 0.00 3.36
6231 15551 2.722201 GGGTGCGGACAGTAGGGAG 61.722 68.421 9.96 0.00 0.00 4.30
6241 15561 4.631740 TCTGACCAGGGGTGCGGA 62.632 66.667 0.00 0.00 35.25 5.54
6270 15591 0.796312 CCGAAGTGGAACAATCACGG 59.204 55.000 0.00 0.00 45.16 4.94
6413 15734 4.778415 CGGAGTCTGGTGCCGTCG 62.778 72.222 0.00 0.00 40.17 5.12
6420 15744 2.491022 GCGATAGGCGGAGTCTGGT 61.491 63.158 0.05 0.00 46.61 4.00
6421 15745 2.336809 GCGATAGGCGGAGTCTGG 59.663 66.667 0.05 0.00 46.61 3.86
6755 16083 2.884639 CAACCAAACCACAGTAAGGAGG 59.115 50.000 0.00 0.00 0.00 4.30
6771 16099 1.217916 TGGGAAGAACAGACCAACCA 58.782 50.000 0.00 0.00 0.00 3.67
6792 16120 4.644685 AGCACCAAAAATAATAGGCATCGT 59.355 37.500 0.00 0.00 0.00 3.73
6871 16203 1.344065 TTGAAGGTAAGGTGCGGAGA 58.656 50.000 0.00 0.00 0.00 3.71
6905 16247 8.874156 AGATGATATTACCTTGAACTGCAGATA 58.126 33.333 23.35 4.51 0.00 1.98
6931 16273 8.840833 AGCAAAGGAAAAACTAAGAAAAACAA 57.159 26.923 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.