Multiple sequence alignment - TraesCS6B01G457400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G457400 chr6B 100.000 5191 0 0 1 5191 713113509 713118699 0.000000e+00 9587.0
1 TraesCS6B01G457400 chr6B 88.474 2863 233 37 1397 4196 713067666 713064838 0.000000e+00 3369.0
2 TraesCS6B01G457400 chr6B 77.364 1100 231 13 1663 2753 713720369 713721459 2.040000e-178 636.0
3 TraesCS6B01G457400 chr6B 81.907 514 51 28 762 1267 713068166 713067687 3.770000e-106 396.0
4 TraesCS6B01G457400 chr6B 92.884 267 16 1 4867 5130 713063668 713063402 8.150000e-103 385.0
5 TraesCS6B01G457400 chr6B 90.043 231 12 3 4235 4465 713064839 713064620 6.580000e-74 289.0
6 TraesCS6B01G457400 chr6B 78.082 365 71 7 3798 4159 713723531 713723889 6.770000e-54 222.0
7 TraesCS6B01G457400 chr6B 91.667 60 5 0 4100 4159 713472821 713472880 3.330000e-12 84.2
8 TraesCS6B01G457400 chr6A 89.715 3364 257 48 964 4273 613926799 613930127 0.000000e+00 4213.0
9 TraesCS6B01G457400 chr6A 78.185 1146 210 28 1844 2980 613950193 613951307 0.000000e+00 695.0
10 TraesCS6B01G457400 chr6A 94.298 456 14 2 4747 5191 613930220 613930674 0.000000e+00 688.0
11 TraesCS6B01G457400 chr6A 96.386 83 3 0 4423 4505 613930129 613930211 2.520000e-28 137.0
12 TraesCS6B01G457400 chr6A 92.553 94 6 1 745 838 613926629 613926721 3.260000e-27 134.0
13 TraesCS6B01G457400 chr6D 89.184 3421 283 30 919 4272 467815803 467812403 0.000000e+00 4187.0
14 TraesCS6B01G457400 chr6D 96.238 505 19 0 1 505 20926869 20927373 0.000000e+00 828.0
15 TraesCS6B01G457400 chr6D 74.462 1950 406 47 1696 3596 467787350 467785444 0.000000e+00 758.0
16 TraesCS6B01G457400 chr6D 94.737 456 13 3 4747 5191 467812309 467811854 0.000000e+00 699.0
17 TraesCS6B01G457400 chr6D 78.853 279 57 2 3873 4150 467832552 467832829 2.470000e-43 187.0
18 TraesCS6B01G457400 chr6D 96.386 83 3 0 4423 4505 467812400 467812318 2.520000e-28 137.0
19 TraesCS6B01G457400 chr6D 92.473 93 7 0 746 838 467815947 467815855 3.260000e-27 134.0
20 TraesCS6B01G457400 chr2D 97.228 505 14 0 1 505 344465451 344465955 0.000000e+00 856.0
21 TraesCS6B01G457400 chr2D 85.174 317 32 4 4150 4464 87754558 87754255 1.400000e-80 311.0
22 TraesCS6B01G457400 chr2D 73.494 913 190 39 1948 2831 571878081 571878970 1.090000e-76 298.0
23 TraesCS6B01G457400 chr2D 89.474 171 16 1 504 674 30144606 30144774 1.130000e-51 215.0
24 TraesCS6B01G457400 chr2D 88.889 171 19 0 504 674 30187725 30187895 1.460000e-50 211.0
25 TraesCS6B01G457400 chr2D 81.463 205 19 5 1314 1499 616177607 616177811 3.240000e-32 150.0
26 TraesCS6B01G457400 chr4D 97.030 505 15 0 1 505 475924080 475924584 0.000000e+00 850.0
27 TraesCS6B01G457400 chr5A 96.832 505 16 0 1 505 546876544 546877048 0.000000e+00 845.0
28 TraesCS6B01G457400 chr5A 74.742 1936 391 57 1696 3580 482354919 482356807 0.000000e+00 776.0
29 TraesCS6B01G457400 chr5A 74.256 1950 410 52 1696 3596 482369003 482370909 0.000000e+00 736.0
30 TraesCS6B01G457400 chr5A 94.468 470 26 0 6 475 493401267 493400798 0.000000e+00 725.0
31 TraesCS6B01G457400 chr5A 90.948 232 15 5 4234 4465 494230884 494231109 1.820000e-79 307.0
32 TraesCS6B01G457400 chr5A 85.197 304 32 3 4162 4465 485383057 485382767 3.040000e-77 300.0
33 TraesCS6B01G457400 chr1B 95.842 505 21 0 1 505 5765850 5766354 0.000000e+00 817.0
34 TraesCS6B01G457400 chr1B 95.652 506 21 1 1 505 520098247 520097742 0.000000e+00 811.0
35 TraesCS6B01G457400 chr1B 83.034 613 58 14 918 1499 632751428 632752025 9.970000e-142 514.0
36 TraesCS6B01G457400 chr1B 89.349 169 17 1 504 672 30734102 30734269 1.460000e-50 211.0
37 TraesCS6B01G457400 chr2A 95.652 506 20 2 1 505 29615124 29614620 0.000000e+00 811.0
38 TraesCS6B01G457400 chr2A 87.869 305 30 3 4163 4464 88010486 88010186 8.270000e-93 351.0
39 TraesCS6B01G457400 chr7B 97.208 394 10 1 1 394 717989283 717988891 0.000000e+00 665.0
40 TraesCS6B01G457400 chr7B 91.617 167 14 0 504 670 596985711 596985877 1.120000e-56 231.0
41 TraesCS6B01G457400 chr7B 89.865 148 10 2 4529 4671 7204171 7204024 8.880000e-43 185.0
42 TraesCS6B01G457400 chr7B 78.922 204 40 3 3377 3579 739395663 739395462 9.070000e-28 135.0
43 TraesCS6B01G457400 chr7B 87.500 56 6 1 4451 4505 123796851 123796906 4.340000e-06 63.9
44 TraesCS6B01G457400 chr3B 82.927 615 55 20 918 1499 569596610 569597207 4.640000e-140 508.0
45 TraesCS6B01G457400 chr3B 79.570 465 47 17 4233 4670 678173736 678173293 6.580000e-74 289.0
46 TraesCS6B01G457400 chr3B 79.741 232 45 2 3359 3589 737765599 737765369 3.220000e-37 167.0
47 TraesCS6B01G457400 chr3B 80.882 204 21 2 1314 1499 761169071 761169274 1.510000e-30 145.0
48 TraesCS6B01G457400 chr2B 86.557 305 25 6 4162 4463 232784796 232785087 6.480000e-84 322.0
49 TraesCS6B01G457400 chr2B 91.034 145 13 0 361 505 653011352 653011208 4.100000e-46 196.0
50 TraesCS6B01G457400 chr2B 84.932 146 16 4 4529 4670 232785084 232785227 5.420000e-30 143.0
51 TraesCS6B01G457400 chr2B 91.379 58 5 0 1236 1293 685741482 685741539 4.310000e-11 80.5
52 TraesCS6B01G457400 chr2B 100.000 28 0 0 4510 4537 163545815 163545842 9.000000e-03 52.8
53 TraesCS6B01G457400 chr7D 79.492 512 48 18 968 1460 292418768 292419241 1.400000e-80 311.0
54 TraesCS6B01G457400 chr7D 76.286 350 71 10 3800 4146 631281259 631281599 5.340000e-40 176.0
55 TraesCS6B01G457400 chr7D 75.587 213 50 2 3941 4152 631235709 631235920 2.560000e-18 104.0
56 TraesCS6B01G457400 chr5B 83.891 329 37 3 4166 4493 461298307 461297994 3.040000e-77 300.0
57 TraesCS6B01G457400 chr5B 90.086 232 17 1 4234 4465 471022794 471023019 3.930000e-76 296.0
58 TraesCS6B01G457400 chr5B 87.586 145 14 2 4530 4670 680338735 680338879 1.160000e-36 165.0
59 TraesCS6B01G457400 chr5B 85.811 148 16 2 4529 4671 473116825 473116678 9.000000e-33 152.0
60 TraesCS6B01G457400 chr5B 91.304 46 4 0 4460 4505 692784557 692784602 4.340000e-06 63.9
61 TraesCS6B01G457400 chr5B 93.023 43 3 0 4463 4505 692784646 692784604 4.340000e-06 63.9
62 TraesCS6B01G457400 chr5D 89.655 232 18 1 4234 4465 393058389 393058164 1.830000e-74 291.0
63 TraesCS6B01G457400 chr5D 89.941 169 17 0 504 672 551918193 551918361 8.750000e-53 219.0
64 TraesCS6B01G457400 chr5D 88.824 170 19 0 504 673 267620419 267620250 5.270000e-50 209.0
65 TraesCS6B01G457400 chr5D 89.222 167 18 0 504 670 529804265 529804431 5.270000e-50 209.0
66 TraesCS6B01G457400 chr5D 87.838 148 13 2 4529 4671 393058165 393058018 8.940000e-38 169.0
67 TraesCS6B01G457400 chr5D 87.671 146 13 1 4530 4670 538767250 538767395 1.160000e-36 165.0
68 TraesCS6B01G457400 chr5D 87.162 148 14 2 4529 4671 390694259 390694406 4.160000e-36 163.0
69 TraesCS6B01G457400 chr5D 100.000 54 0 0 670 723 503135158 503135211 3.310000e-17 100.0
70 TraesCS6B01G457400 chr5D 97.674 43 1 0 4463 4505 3034145 3034187 2.000000e-09 75.0
71 TraesCS6B01G457400 chr4A 82.569 327 30 7 4162 4467 572842740 572843060 3.990000e-66 263.0
72 TraesCS6B01G457400 chr4A 87.671 146 13 1 4530 4670 629915530 629915385 1.160000e-36 165.0
73 TraesCS6B01G457400 chr1D 90.419 167 16 0 504 670 470206986 470206820 2.430000e-53 220.0
74 TraesCS6B01G457400 chr3D 88.824 170 19 0 504 673 602048050 602047881 5.270000e-50 209.0
75 TraesCS6B01G457400 chrUn 76.294 367 79 6 3786 4151 248490373 248490732 6.860000e-44 189.0
76 TraesCS6B01G457400 chrUn 81.951 205 18 5 1314 1499 21461970 21461766 6.960000e-34 156.0
77 TraesCS6B01G457400 chr4B 80.097 206 20 7 1314 1499 221458776 221458980 3.260000e-27 134.0
78 TraesCS6B01G457400 chr4B 79.512 205 23 6 1314 1499 4349959 4350163 1.520000e-25 128.0
79 TraesCS6B01G457400 chr4B 82.524 103 6 1 1409 1499 342969374 342969272 4.310000e-11 80.5
80 TraesCS6B01G457400 chr7A 78.049 205 42 3 3377 3579 729279140 729278937 5.460000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G457400 chr6B 713113509 713118699 5190 False 9587.00 9587 100.000 1 5191 1 chr6B.!!$F1 5190
1 TraesCS6B01G457400 chr6B 713063402 713068166 4764 True 1109.75 3369 88.327 762 5130 4 chr6B.!!$R1 4368
2 TraesCS6B01G457400 chr6B 713720369 713723889 3520 False 429.00 636 77.723 1663 4159 2 chr6B.!!$F3 2496
3 TraesCS6B01G457400 chr6A 613926629 613930674 4045 False 1293.00 4213 93.238 745 5191 4 chr6A.!!$F2 4446
4 TraesCS6B01G457400 chr6A 613950193 613951307 1114 False 695.00 695 78.185 1844 2980 1 chr6A.!!$F1 1136
5 TraesCS6B01G457400 chr6D 467811854 467815947 4093 True 1289.25 4187 93.195 746 5191 4 chr6D.!!$R2 4445
6 TraesCS6B01G457400 chr6D 20926869 20927373 504 False 828.00 828 96.238 1 505 1 chr6D.!!$F1 504
7 TraesCS6B01G457400 chr6D 467785444 467787350 1906 True 758.00 758 74.462 1696 3596 1 chr6D.!!$R1 1900
8 TraesCS6B01G457400 chr2D 344465451 344465955 504 False 856.00 856 97.228 1 505 1 chr2D.!!$F3 504
9 TraesCS6B01G457400 chr2D 571878081 571878970 889 False 298.00 298 73.494 1948 2831 1 chr2D.!!$F4 883
10 TraesCS6B01G457400 chr4D 475924080 475924584 504 False 850.00 850 97.030 1 505 1 chr4D.!!$F1 504
11 TraesCS6B01G457400 chr5A 546876544 546877048 504 False 845.00 845 96.832 1 505 1 chr5A.!!$F4 504
12 TraesCS6B01G457400 chr5A 482354919 482356807 1888 False 776.00 776 74.742 1696 3580 1 chr5A.!!$F1 1884
13 TraesCS6B01G457400 chr5A 482369003 482370909 1906 False 736.00 736 74.256 1696 3596 1 chr5A.!!$F2 1900
14 TraesCS6B01G457400 chr1B 5765850 5766354 504 False 817.00 817 95.842 1 505 1 chr1B.!!$F1 504
15 TraesCS6B01G457400 chr1B 520097742 520098247 505 True 811.00 811 95.652 1 505 1 chr1B.!!$R1 504
16 TraesCS6B01G457400 chr1B 632751428 632752025 597 False 514.00 514 83.034 918 1499 1 chr1B.!!$F3 581
17 TraesCS6B01G457400 chr2A 29614620 29615124 504 True 811.00 811 95.652 1 505 1 chr2A.!!$R1 504
18 TraesCS6B01G457400 chr3B 569596610 569597207 597 False 508.00 508 82.927 918 1499 1 chr3B.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 626 0.042535 GCGCGCGCTAAAATGACATA 60.043 50.000 44.38 0.00 38.26 2.29 F
863 880 0.108585 GTGTGGGTGTGGTCTGATGT 59.891 55.000 0.00 0.00 0.00 3.06 F
1157 1204 0.380378 AGAGACGAGATCGAGCAAGC 59.620 55.000 9.58 0.00 43.02 4.01 F
1250 1297 0.527385 CTCAAGGAGCTGCTCTACGC 60.527 60.000 27.09 12.02 39.77 4.42 F
1318 1377 0.815615 CGGAGGTAAATGCCTGCCTC 60.816 60.000 3.63 6.24 43.04 4.70 F
1589 1683 1.004745 CTAACAGCCAACCCACTCCAT 59.995 52.381 0.00 0.00 0.00 3.41 F
3326 3495 0.250467 TGCTTGCCTCACAGAAGGTC 60.250 55.000 0.00 0.00 38.79 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1776 0.037590 GTGTTGGCTGTGGGGACATA 59.962 55.000 0.00 0.00 46.14 2.29 R
2228 2359 0.887247 TGTTCCATTGGCAATCACGG 59.113 50.000 10.36 9.22 0.00 4.94 R
2229 2360 2.721274 TTGTTCCATTGGCAATCACG 57.279 45.000 10.36 0.00 0.00 4.35 R
2590 2722 2.730382 TCAAAGCAGACATGATGCCAT 58.270 42.857 19.39 9.74 44.97 4.40 R
3308 3476 0.957888 GGACCTTCTGTGAGGCAAGC 60.958 60.000 0.00 0.00 40.65 4.01 R
3339 3508 0.178961 ACCACTTGCTTTTCTCCCCC 60.179 55.000 0.00 0.00 0.00 5.40 R
4355 5587 0.341609 AAGGGAGGAGGAGGAGAAGG 59.658 60.000 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 4.071961 TCTTCAGTTGTGCAGCTCTAAA 57.928 40.909 0.00 0.00 0.00 1.85
204 206 5.215252 TGAGTATTTCCTGTATGCTAGGC 57.785 43.478 0.00 0.00 35.23 3.93
303 305 7.835682 TGAAATTGATGAGACAAATCCCTGTAT 59.164 33.333 0.00 0.00 33.44 2.29
396 398 4.338118 CGAGCTTCTCTAGTCCATCTCTTT 59.662 45.833 0.00 0.00 0.00 2.52
461 463 3.009143 AGGACTTTTAGACCATGTCCACC 59.991 47.826 12.16 0.00 46.81 4.61
462 464 3.009143 GGACTTTTAGACCATGTCCACCT 59.991 47.826 0.00 0.00 44.59 4.00
505 507 4.522789 ACATTCCACAACTACATGAAACCC 59.477 41.667 0.00 0.00 0.00 4.11
506 508 3.149005 TCCACAACTACATGAAACCCC 57.851 47.619 0.00 0.00 0.00 4.95
507 509 2.443632 TCCACAACTACATGAAACCCCA 59.556 45.455 0.00 0.00 0.00 4.96
508 510 3.117474 TCCACAACTACATGAAACCCCAA 60.117 43.478 0.00 0.00 0.00 4.12
509 511 3.639094 CCACAACTACATGAAACCCCAAA 59.361 43.478 0.00 0.00 0.00 3.28
510 512 4.283212 CCACAACTACATGAAACCCCAAAT 59.717 41.667 0.00 0.00 0.00 2.32
511 513 5.478679 CCACAACTACATGAAACCCCAAATA 59.521 40.000 0.00 0.00 0.00 1.40
512 514 6.386654 CACAACTACATGAAACCCCAAATAC 58.613 40.000 0.00 0.00 0.00 1.89
513 515 6.015856 CACAACTACATGAAACCCCAAATACA 60.016 38.462 0.00 0.00 0.00 2.29
514 516 6.015772 ACAACTACATGAAACCCCAAATACAC 60.016 38.462 0.00 0.00 0.00 2.90
515 517 5.014202 ACTACATGAAACCCCAAATACACC 58.986 41.667 0.00 0.00 0.00 4.16
516 518 2.823154 ACATGAAACCCCAAATACACCG 59.177 45.455 0.00 0.00 0.00 4.94
517 519 1.249407 TGAAACCCCAAATACACCGC 58.751 50.000 0.00 0.00 0.00 5.68
518 520 0.169451 GAAACCCCAAATACACCGCG 59.831 55.000 0.00 0.00 0.00 6.46
519 521 1.868987 AAACCCCAAATACACCGCGC 61.869 55.000 0.00 0.00 0.00 6.86
520 522 3.871574 CCCCAAATACACCGCGCG 61.872 66.667 25.67 25.67 0.00 6.86
521 523 2.816083 CCCAAATACACCGCGCGA 60.816 61.111 34.63 12.32 0.00 5.87
522 524 2.701006 CCAAATACACCGCGCGAG 59.299 61.111 34.63 25.26 0.00 5.03
523 525 1.807981 CCAAATACACCGCGCGAGA 60.808 57.895 34.63 13.60 0.00 4.04
524 526 1.151777 CCAAATACACCGCGCGAGAT 61.152 55.000 34.63 18.05 0.00 2.75
525 527 1.483316 CAAATACACCGCGCGAGATA 58.517 50.000 34.63 19.73 0.00 1.98
526 528 1.452025 CAAATACACCGCGCGAGATAG 59.548 52.381 34.63 17.10 0.00 2.08
527 529 0.663568 AATACACCGCGCGAGATAGC 60.664 55.000 34.63 0.00 0.00 2.97
536 538 3.293303 GCGAGATAGCGTATCCGAC 57.707 57.895 13.97 6.98 35.79 4.79
537 539 0.179194 GCGAGATAGCGTATCCGACC 60.179 60.000 13.97 0.00 35.79 4.79
538 540 1.154197 CGAGATAGCGTATCCGACCA 58.846 55.000 0.00 0.00 35.79 4.02
539 541 1.738350 CGAGATAGCGTATCCGACCAT 59.262 52.381 0.00 0.00 35.79 3.55
540 542 2.476352 CGAGATAGCGTATCCGACCATG 60.476 54.545 0.00 0.00 35.79 3.66
541 543 1.202582 AGATAGCGTATCCGACCATGC 59.797 52.381 0.00 0.00 35.79 4.06
542 544 0.109272 ATAGCGTATCCGACCATGCG 60.109 55.000 0.00 0.00 35.23 4.73
544 546 3.036084 CGTATCCGACCATGCGCC 61.036 66.667 4.18 0.00 35.63 6.53
545 547 2.665185 GTATCCGACCATGCGCCC 60.665 66.667 4.18 0.00 0.00 6.13
546 548 3.157949 TATCCGACCATGCGCCCA 61.158 61.111 4.18 0.00 0.00 5.36
547 549 2.736826 TATCCGACCATGCGCCCAA 61.737 57.895 4.18 0.00 0.00 4.12
548 550 2.933878 TATCCGACCATGCGCCCAAC 62.934 60.000 4.18 0.00 0.00 3.77
550 552 3.499737 CGACCATGCGCCCAACTC 61.500 66.667 4.18 0.00 0.00 3.01
551 553 3.134127 GACCATGCGCCCAACTCC 61.134 66.667 4.18 0.00 0.00 3.85
552 554 3.628646 GACCATGCGCCCAACTCCT 62.629 63.158 4.18 0.00 0.00 3.69
553 555 2.361610 CCATGCGCCCAACTCCTT 60.362 61.111 4.18 0.00 0.00 3.36
554 556 1.077787 CCATGCGCCCAACTCCTTA 60.078 57.895 4.18 0.00 0.00 2.69
555 557 0.466189 CCATGCGCCCAACTCCTTAT 60.466 55.000 4.18 0.00 0.00 1.73
556 558 1.202758 CCATGCGCCCAACTCCTTATA 60.203 52.381 4.18 0.00 0.00 0.98
557 559 1.873591 CATGCGCCCAACTCCTTATAC 59.126 52.381 4.18 0.00 0.00 1.47
558 560 0.179468 TGCGCCCAACTCCTTATACC 59.821 55.000 4.18 0.00 0.00 2.73
559 561 0.878961 GCGCCCAACTCCTTATACCG 60.879 60.000 0.00 0.00 0.00 4.02
560 562 0.878961 CGCCCAACTCCTTATACCGC 60.879 60.000 0.00 0.00 0.00 5.68
561 563 0.878961 GCCCAACTCCTTATACCGCG 60.879 60.000 0.00 0.00 0.00 6.46
562 564 0.249741 CCCAACTCCTTATACCGCGG 60.250 60.000 26.86 26.86 0.00 6.46
563 565 0.249741 CCAACTCCTTATACCGCGGG 60.250 60.000 31.76 11.11 0.00 6.13
564 566 0.878961 CAACTCCTTATACCGCGGGC 60.879 60.000 31.76 0.00 0.00 6.13
565 567 2.049433 CTCCTTATACCGCGGGCG 60.049 66.667 31.76 12.05 39.44 6.13
566 568 4.289245 TCCTTATACCGCGGGCGC 62.289 66.667 31.76 0.00 38.24 6.53
606 608 4.114997 CCACCCGGCGAATTGTGC 62.115 66.667 9.30 0.00 0.00 4.57
607 609 4.459331 CACCCGGCGAATTGTGCG 62.459 66.667 9.30 0.00 0.00 5.34
622 624 2.097538 GCGCGCGCTAAAATGACA 59.902 55.556 44.38 0.00 38.26 3.58
623 625 1.297598 GCGCGCGCTAAAATGACAT 60.298 52.632 44.38 0.00 38.26 3.06
624 626 0.042535 GCGCGCGCTAAAATGACATA 60.043 50.000 44.38 0.00 38.26 2.29
625 627 1.398451 GCGCGCGCTAAAATGACATAT 60.398 47.619 44.38 0.00 38.26 1.78
626 628 2.903678 CGCGCGCTAAAATGACATATT 58.096 42.857 30.48 0.00 0.00 1.28
627 629 3.288242 CGCGCGCTAAAATGACATATTT 58.712 40.909 30.48 0.00 0.00 1.40
628 630 3.723764 CGCGCGCTAAAATGACATATTTT 59.276 39.130 30.48 0.00 35.62 1.82
629 631 4.901314 CGCGCGCTAAAATGACATATTTTA 59.099 37.500 30.48 0.00 33.73 1.52
630 632 5.164415 CGCGCGCTAAAATGACATATTTTAC 60.164 40.000 30.48 0.00 33.73 2.01
631 633 5.164415 GCGCGCTAAAATGACATATTTTACG 60.164 40.000 26.67 14.92 34.77 3.18
632 634 5.335949 CGCGCTAAAATGACATATTTTACGG 59.664 40.000 5.56 9.18 33.72 4.02
633 635 5.115021 GCGCTAAAATGACATATTTTACGGC 59.885 40.000 0.00 12.71 33.72 5.68
634 636 5.335949 CGCTAAAATGACATATTTTACGGCG 59.664 40.000 4.80 4.80 39.42 6.46
635 637 5.115021 GCTAAAATGACATATTTTACGGCGC 59.885 40.000 6.90 0.00 33.73 6.53
636 638 2.941891 ATGACATATTTTACGGCGCG 57.058 45.000 6.90 0.00 0.00 6.86
637 639 1.923899 TGACATATTTTACGGCGCGA 58.076 45.000 12.10 0.00 0.00 5.87
638 640 1.589320 TGACATATTTTACGGCGCGAC 59.411 47.619 12.10 5.80 0.00 5.19
639 641 1.589320 GACATATTTTACGGCGCGACA 59.411 47.619 14.85 0.00 0.00 4.35
640 642 1.325338 ACATATTTTACGGCGCGACAC 59.675 47.619 14.85 0.00 0.00 3.67
641 643 1.591158 CATATTTTACGGCGCGACACT 59.409 47.619 14.85 0.00 0.00 3.55
642 644 1.712401 TATTTTACGGCGCGACACTT 58.288 45.000 14.85 0.00 0.00 3.16
643 645 0.165079 ATTTTACGGCGCGACACTTG 59.835 50.000 14.85 0.00 0.00 3.16
644 646 1.152989 TTTTACGGCGCGACACTTGT 61.153 50.000 14.85 3.59 0.00 3.16
645 647 1.152989 TTTACGGCGCGACACTTGTT 61.153 50.000 14.85 0.00 0.00 2.83
646 648 1.152989 TTACGGCGCGACACTTGTTT 61.153 50.000 14.85 0.00 0.00 2.83
647 649 0.318529 TACGGCGCGACACTTGTTTA 60.319 50.000 14.85 0.00 0.00 2.01
648 650 1.129809 CGGCGCGACACTTGTTTAG 59.870 57.895 14.85 0.00 0.00 1.85
649 651 1.154469 GGCGCGACACTTGTTTAGC 60.154 57.895 12.10 0.00 0.00 3.09
650 652 1.507096 GCGCGACACTTGTTTAGCG 60.507 57.895 12.10 17.56 43.73 4.26
651 653 1.507096 CGCGACACTTGTTTAGCGC 60.507 57.895 0.00 0.00 38.79 5.92
652 654 1.507096 GCGACACTTGTTTAGCGCG 60.507 57.895 0.00 0.00 35.02 6.86
653 655 1.129809 CGACACTTGTTTAGCGCGG 59.870 57.895 8.83 0.00 0.00 6.46
654 656 1.154469 GACACTTGTTTAGCGCGGC 60.154 57.895 8.83 0.00 0.00 6.53
655 657 1.566018 GACACTTGTTTAGCGCGGCT 61.566 55.000 8.83 8.38 43.41 5.52
656 658 1.154413 CACTTGTTTAGCGCGGCTG 60.154 57.895 8.83 0.00 40.10 4.85
657 659 1.597027 ACTTGTTTAGCGCGGCTGT 60.597 52.632 8.83 0.00 40.10 4.40
658 660 1.164041 ACTTGTTTAGCGCGGCTGTT 61.164 50.000 8.83 0.00 40.10 3.16
659 661 0.725784 CTTGTTTAGCGCGGCTGTTG 60.726 55.000 8.83 0.00 40.10 3.33
660 662 2.123988 TTGTTTAGCGCGGCTGTTGG 62.124 55.000 8.83 0.00 40.10 3.77
661 663 2.031314 TTTAGCGCGGCTGTTGGA 59.969 55.556 8.83 0.00 40.10 3.53
662 664 2.032634 TTTAGCGCGGCTGTTGGAG 61.033 57.895 8.83 0.00 40.10 3.86
663 665 2.443260 TTTAGCGCGGCTGTTGGAGA 62.443 55.000 8.83 0.00 40.10 3.71
664 666 2.238847 TTAGCGCGGCTGTTGGAGAT 62.239 55.000 8.83 0.00 40.10 2.75
665 667 1.388837 TAGCGCGGCTGTTGGAGATA 61.389 55.000 8.83 0.00 40.10 1.98
666 668 2.526120 GCGCGGCTGTTGGAGATAC 61.526 63.158 8.83 0.00 0.00 2.24
667 669 1.141881 CGCGGCTGTTGGAGATACT 59.858 57.895 0.00 0.00 0.00 2.12
668 670 0.872021 CGCGGCTGTTGGAGATACTC 60.872 60.000 0.00 0.00 0.00 2.59
669 671 0.461961 GCGGCTGTTGGAGATACTCT 59.538 55.000 0.00 0.00 0.00 3.24
670 672 1.134670 GCGGCTGTTGGAGATACTCTT 60.135 52.381 0.00 0.00 0.00 2.85
671 673 2.100916 GCGGCTGTTGGAGATACTCTTA 59.899 50.000 0.00 0.00 0.00 2.10
672 674 3.797184 GCGGCTGTTGGAGATACTCTTAG 60.797 52.174 0.00 0.00 0.00 2.18
673 675 3.723260 GGCTGTTGGAGATACTCTTAGC 58.277 50.000 0.00 0.00 0.00 3.09
674 676 3.386402 GGCTGTTGGAGATACTCTTAGCT 59.614 47.826 0.00 0.00 0.00 3.32
675 677 4.500716 GGCTGTTGGAGATACTCTTAGCTC 60.501 50.000 0.00 0.00 39.63 4.09
676 678 4.098654 GCTGTTGGAGATACTCTTAGCTCA 59.901 45.833 0.00 0.00 41.76 4.26
677 679 5.735922 GCTGTTGGAGATACTCTTAGCTCAG 60.736 48.000 0.00 0.00 41.76 3.35
678 680 4.098654 TGTTGGAGATACTCTTAGCTCAGC 59.901 45.833 0.00 0.00 41.76 4.26
679 681 3.226777 TGGAGATACTCTTAGCTCAGCC 58.773 50.000 0.00 0.00 41.76 4.85
680 682 2.560981 GGAGATACTCTTAGCTCAGCCC 59.439 54.545 0.00 0.00 41.76 5.19
681 683 2.227865 GAGATACTCTTAGCTCAGCCCG 59.772 54.545 0.00 0.00 40.03 6.13
682 684 2.158593 AGATACTCTTAGCTCAGCCCGA 60.159 50.000 0.00 0.00 0.00 5.14
683 685 2.139323 TACTCTTAGCTCAGCCCGAA 57.861 50.000 0.00 0.00 0.00 4.30
684 686 0.820871 ACTCTTAGCTCAGCCCGAAG 59.179 55.000 0.00 0.00 0.00 3.79
685 687 1.107114 CTCTTAGCTCAGCCCGAAGA 58.893 55.000 0.00 0.00 0.00 2.87
686 688 1.686052 CTCTTAGCTCAGCCCGAAGAT 59.314 52.381 6.70 0.00 0.00 2.40
687 689 2.102252 CTCTTAGCTCAGCCCGAAGATT 59.898 50.000 6.70 0.00 0.00 2.40
688 690 2.101582 TCTTAGCTCAGCCCGAAGATTC 59.898 50.000 0.00 0.00 0.00 2.52
689 691 1.781786 TAGCTCAGCCCGAAGATTCT 58.218 50.000 0.00 0.00 0.00 2.40
690 692 0.177604 AGCTCAGCCCGAAGATTCTG 59.822 55.000 0.00 0.00 0.00 3.02
691 693 1.435408 GCTCAGCCCGAAGATTCTGC 61.435 60.000 0.00 0.00 0.00 4.26
692 694 0.177604 CTCAGCCCGAAGATTCTGCT 59.822 55.000 1.89 1.89 34.60 4.24
693 695 0.176680 TCAGCCCGAAGATTCTGCTC 59.823 55.000 4.17 0.00 32.81 4.26
694 696 0.813210 CAGCCCGAAGATTCTGCTCC 60.813 60.000 4.17 0.00 32.81 4.70
695 697 1.524849 GCCCGAAGATTCTGCTCCC 60.525 63.158 0.00 0.00 0.00 4.30
696 698 1.977293 GCCCGAAGATTCTGCTCCCT 61.977 60.000 0.00 0.00 0.00 4.20
697 699 0.543749 CCCGAAGATTCTGCTCCCTT 59.456 55.000 0.00 0.00 0.00 3.95
698 700 1.065126 CCCGAAGATTCTGCTCCCTTT 60.065 52.381 0.00 0.00 0.00 3.11
699 701 2.619074 CCCGAAGATTCTGCTCCCTTTT 60.619 50.000 0.00 0.00 0.00 2.27
700 702 2.680339 CCGAAGATTCTGCTCCCTTTTC 59.320 50.000 0.00 0.00 0.00 2.29
701 703 3.604582 CGAAGATTCTGCTCCCTTTTCT 58.395 45.455 0.00 0.00 0.00 2.52
702 704 3.373439 CGAAGATTCTGCTCCCTTTTCTG 59.627 47.826 0.00 0.00 0.00 3.02
703 705 2.720915 AGATTCTGCTCCCTTTTCTGC 58.279 47.619 0.00 0.00 0.00 4.26
704 706 2.308275 AGATTCTGCTCCCTTTTCTGCT 59.692 45.455 0.00 0.00 0.00 4.24
705 707 2.191128 TTCTGCTCCCTTTTCTGCTC 57.809 50.000 0.00 0.00 0.00 4.26
706 708 1.356124 TCTGCTCCCTTTTCTGCTCT 58.644 50.000 0.00 0.00 0.00 4.09
707 709 2.540383 TCTGCTCCCTTTTCTGCTCTA 58.460 47.619 0.00 0.00 0.00 2.43
708 710 2.499289 TCTGCTCCCTTTTCTGCTCTAG 59.501 50.000 0.00 0.00 0.00 2.43
709 711 1.065854 TGCTCCCTTTTCTGCTCTAGC 60.066 52.381 0.00 0.00 42.50 3.42
710 712 1.209261 GCTCCCTTTTCTGCTCTAGCT 59.791 52.381 3.26 0.00 42.66 3.32
711 713 2.355615 GCTCCCTTTTCTGCTCTAGCTT 60.356 50.000 3.26 0.00 42.66 3.74
712 714 3.530535 CTCCCTTTTCTGCTCTAGCTTC 58.469 50.000 3.26 0.00 42.66 3.86
713 715 2.093973 TCCCTTTTCTGCTCTAGCTTCG 60.094 50.000 3.26 0.00 42.66 3.79
714 716 2.354203 CCCTTTTCTGCTCTAGCTTCGT 60.354 50.000 3.26 0.00 42.66 3.85
715 717 3.330267 CCTTTTCTGCTCTAGCTTCGTT 58.670 45.455 3.26 0.00 42.66 3.85
716 718 3.369451 CCTTTTCTGCTCTAGCTTCGTTC 59.631 47.826 3.26 0.00 42.66 3.95
717 719 3.944055 TTTCTGCTCTAGCTTCGTTCT 57.056 42.857 3.26 0.00 42.66 3.01
718 720 2.929531 TCTGCTCTAGCTTCGTTCTG 57.070 50.000 3.26 0.00 42.66 3.02
719 721 2.437413 TCTGCTCTAGCTTCGTTCTGA 58.563 47.619 3.26 0.00 42.66 3.27
720 722 2.421775 TCTGCTCTAGCTTCGTTCTGAG 59.578 50.000 3.26 0.00 42.66 3.35
721 723 2.421775 CTGCTCTAGCTTCGTTCTGAGA 59.578 50.000 3.26 0.00 42.66 3.27
722 724 3.020274 TGCTCTAGCTTCGTTCTGAGAT 58.980 45.455 3.26 0.00 42.66 2.75
723 725 4.200092 TGCTCTAGCTTCGTTCTGAGATA 58.800 43.478 3.26 0.00 42.66 1.98
724 726 4.274705 TGCTCTAGCTTCGTTCTGAGATAG 59.725 45.833 3.26 0.00 42.66 2.08
725 727 4.274950 GCTCTAGCTTCGTTCTGAGATAGT 59.725 45.833 0.00 0.00 38.21 2.12
726 728 5.220970 GCTCTAGCTTCGTTCTGAGATAGTT 60.221 44.000 0.00 0.00 38.21 2.24
727 729 6.125327 TCTAGCTTCGTTCTGAGATAGTTG 57.875 41.667 0.00 0.00 0.00 3.16
728 730 4.116747 AGCTTCGTTCTGAGATAGTTGG 57.883 45.455 0.00 0.00 0.00 3.77
729 731 3.511934 AGCTTCGTTCTGAGATAGTTGGT 59.488 43.478 0.00 0.00 0.00 3.67
730 732 3.614616 GCTTCGTTCTGAGATAGTTGGTG 59.385 47.826 0.00 0.00 0.00 4.17
731 733 3.868757 TCGTTCTGAGATAGTTGGTGG 57.131 47.619 0.00 0.00 0.00 4.61
732 734 3.162666 TCGTTCTGAGATAGTTGGTGGT 58.837 45.455 0.00 0.00 0.00 4.16
733 735 3.576982 TCGTTCTGAGATAGTTGGTGGTT 59.423 43.478 0.00 0.00 0.00 3.67
734 736 4.768448 TCGTTCTGAGATAGTTGGTGGTTA 59.232 41.667 0.00 0.00 0.00 2.85
735 737 4.863131 CGTTCTGAGATAGTTGGTGGTTAC 59.137 45.833 0.00 0.00 0.00 2.50
736 738 5.336531 CGTTCTGAGATAGTTGGTGGTTACT 60.337 44.000 0.00 0.00 0.00 2.24
737 739 6.465084 GTTCTGAGATAGTTGGTGGTTACTT 58.535 40.000 0.00 0.00 0.00 2.24
738 740 6.037786 TCTGAGATAGTTGGTGGTTACTTG 57.962 41.667 0.00 0.00 0.00 3.16
739 741 5.542635 TCTGAGATAGTTGGTGGTTACTTGT 59.457 40.000 0.00 0.00 0.00 3.16
740 742 5.790593 TGAGATAGTTGGTGGTTACTTGTC 58.209 41.667 0.00 0.00 0.00 3.18
741 743 5.305902 TGAGATAGTTGGTGGTTACTTGTCA 59.694 40.000 0.00 0.00 0.00 3.58
742 744 6.182507 AGATAGTTGGTGGTTACTTGTCAA 57.817 37.500 0.00 0.00 0.00 3.18
743 745 6.597562 AGATAGTTGGTGGTTACTTGTCAAA 58.402 36.000 0.00 0.00 0.00 2.69
744 746 7.057894 AGATAGTTGGTGGTTACTTGTCAAAA 58.942 34.615 0.00 0.00 0.00 2.44
782 784 5.615289 TCAGAGAAAGACCCAAAGAAGAAG 58.385 41.667 0.00 0.00 0.00 2.85
785 787 6.017523 CAGAGAAAGACCCAAAGAAGAAGAAC 60.018 42.308 0.00 0.00 0.00 3.01
825 842 2.158158 TCTTCTTCCTCCTCTGAACCCA 60.158 50.000 0.00 0.00 0.00 4.51
846 863 4.554363 CTCGCTCGCCTACCGGTG 62.554 72.222 19.93 7.24 42.32 4.94
849 866 4.814294 GCTCGCCTACCGGTGTGG 62.814 72.222 19.93 20.07 41.65 4.17
850 867 4.143333 CTCGCCTACCGGTGTGGG 62.143 72.222 19.93 17.33 45.52 4.61
852 869 4.752879 CGCCTACCGGTGTGGGTG 62.753 72.222 19.93 18.48 45.53 4.61
853 870 3.633116 GCCTACCGGTGTGGGTGT 61.633 66.667 19.93 0.00 44.61 4.16
854 871 2.345991 CCTACCGGTGTGGGTGTG 59.654 66.667 19.93 0.00 44.64 3.82
855 872 2.345991 CTACCGGTGTGGGTGTGG 59.654 66.667 19.93 0.00 44.64 4.17
856 873 2.446227 TACCGGTGTGGGTGTGGT 60.446 61.111 19.93 0.00 44.64 4.16
857 874 2.444700 CTACCGGTGTGGGTGTGGTC 62.445 65.000 19.93 0.00 44.64 4.02
858 875 2.950617 TACCGGTGTGGGTGTGGTCT 62.951 60.000 19.93 0.00 44.64 3.85
859 876 2.280797 CGGTGTGGGTGTGGTCTG 60.281 66.667 0.00 0.00 0.00 3.51
860 877 2.802724 CGGTGTGGGTGTGGTCTGA 61.803 63.158 0.00 0.00 0.00 3.27
861 878 1.761174 GGTGTGGGTGTGGTCTGAT 59.239 57.895 0.00 0.00 0.00 2.90
862 879 0.606401 GGTGTGGGTGTGGTCTGATG 60.606 60.000 0.00 0.00 0.00 3.07
863 880 0.108585 GTGTGGGTGTGGTCTGATGT 59.891 55.000 0.00 0.00 0.00 3.06
864 881 1.346395 GTGTGGGTGTGGTCTGATGTA 59.654 52.381 0.00 0.00 0.00 2.29
865 882 2.050918 TGTGGGTGTGGTCTGATGTAA 58.949 47.619 0.00 0.00 0.00 2.41
866 883 2.642311 TGTGGGTGTGGTCTGATGTAAT 59.358 45.455 0.00 0.00 0.00 1.89
881 898 7.099764 TCTGATGTAATCTGAAGTTCTGAACC 58.900 38.462 16.48 3.60 46.38 3.62
885 910 4.731313 AATCTGAAGTTCTGAACCCCTT 57.269 40.909 16.48 5.16 0.00 3.95
886 911 3.771577 TCTGAAGTTCTGAACCCCTTC 57.228 47.619 16.48 13.78 35.11 3.46
888 913 1.766496 TGAAGTTCTGAACCCCTTCGT 59.234 47.619 16.48 0.00 36.87 3.85
889 914 2.967201 TGAAGTTCTGAACCCCTTCGTA 59.033 45.455 16.48 0.00 36.87 3.43
890 915 3.006537 TGAAGTTCTGAACCCCTTCGTAG 59.993 47.826 16.48 0.00 36.87 3.51
891 916 1.275573 AGTTCTGAACCCCTTCGTAGC 59.724 52.381 16.48 0.00 0.00 3.58
892 917 1.275573 GTTCTGAACCCCTTCGTAGCT 59.724 52.381 9.38 0.00 0.00 3.32
894 919 0.741221 CTGAACCCCTTCGTAGCTGC 60.741 60.000 0.00 0.00 0.00 5.25
895 920 1.449778 GAACCCCTTCGTAGCTGCC 60.450 63.158 0.00 0.00 0.00 4.85
914 939 2.514803 CCAAATCAAACTCGGTCCCTT 58.485 47.619 0.00 0.00 0.00 3.95
915 940 3.681593 CCAAATCAAACTCGGTCCCTTA 58.318 45.455 0.00 0.00 0.00 2.69
938 968 1.418908 ATATAGGCGGGCCAGTGCTT 61.419 55.000 12.97 4.17 38.92 3.91
1035 1079 1.673665 CACCACTTCTCTGCAGGCC 60.674 63.158 15.13 0.00 0.00 5.19
1078 1125 1.458588 ATCCTTCCGAGCCTCCTCC 60.459 63.158 0.00 0.00 34.49 4.30
1089 1136 2.511145 CTCCTCCGCAGCAAGCTC 60.511 66.667 0.00 0.00 42.61 4.09
1140 1187 0.538516 GCGAGATAGAGGGGCTCAGA 60.539 60.000 0.00 0.00 32.06 3.27
1157 1204 0.380378 AGAGACGAGATCGAGCAAGC 59.620 55.000 9.58 0.00 43.02 4.01
1194 1241 1.734477 CGTCAACGCCAGGTCTGAG 60.734 63.158 0.00 0.00 0.00 3.35
1250 1297 0.527385 CTCAAGGAGCTGCTCTACGC 60.527 60.000 27.09 12.02 39.77 4.42
1312 1371 2.119029 GCCCACGGAGGTAAATGCC 61.119 63.158 0.00 0.00 34.66 4.40
1318 1377 0.815615 CGGAGGTAAATGCCTGCCTC 60.816 60.000 3.63 6.24 43.04 4.70
1364 1423 5.067936 CCACCTGTTTGTGTTAATTACCACA 59.932 40.000 11.41 11.41 34.35 4.17
1371 1430 7.170489 TGTTTGTGTTAATTACCACATGCATTG 59.830 33.333 15.56 0.00 0.00 2.82
1430 1498 3.014623 CCATGATTTCTTCTGCTGCAGA 58.985 45.455 27.35 27.35 38.87 4.26
1515 1606 6.528537 AATGCTTCATTTATACCTTGCACA 57.471 33.333 0.00 0.00 28.76 4.57
1516 1607 6.720112 ATGCTTCATTTATACCTTGCACAT 57.280 33.333 0.00 0.00 31.92 3.21
1517 1608 6.135290 TGCTTCATTTATACCTTGCACATC 57.865 37.500 0.00 0.00 0.00 3.06
1518 1609 5.887598 TGCTTCATTTATACCTTGCACATCT 59.112 36.000 0.00 0.00 0.00 2.90
1561 1655 3.594603 ACATCCGAGTAAACAGTCCAG 57.405 47.619 0.00 0.00 0.00 3.86
1573 1667 6.929606 AGTAAACAGTCCAGTGTGATTCTAAC 59.070 38.462 0.00 0.00 0.00 2.34
1586 1680 2.561478 TTCTAACAGCCAACCCACTC 57.439 50.000 0.00 0.00 0.00 3.51
1589 1683 1.004745 CTAACAGCCAACCCACTCCAT 59.995 52.381 0.00 0.00 0.00 3.41
1627 1735 3.693085 ACCAGAAATGCAACTGCTGATAG 59.307 43.478 8.44 0.00 42.66 2.08
1636 1744 3.064545 GCAACTGCTGATAGTTCATCCAC 59.935 47.826 0.00 0.00 38.78 4.02
1655 1763 3.436470 CCACAAGAAAAAGGAGAAGGGGA 60.436 47.826 0.00 0.00 0.00 4.81
1660 1768 2.442262 AAAAGGAGAAGGGGAGAGGT 57.558 50.000 0.00 0.00 0.00 3.85
1668 1776 2.989571 AGAAGGGGAGAGGTTTCAACAT 59.010 45.455 0.00 0.00 0.00 2.71
1720 1828 5.813157 GGAACAAGGACCAAATTTCGAAAAA 59.187 36.000 15.66 0.00 0.00 1.94
1727 1835 7.593825 AGGACCAAATTTCGAAAAAGATACAG 58.406 34.615 15.66 1.65 0.00 2.74
1736 1844 6.880822 TCGAAAAAGATACAGGACATAACG 57.119 37.500 0.00 0.00 0.00 3.18
1751 1859 3.242518 CATAACGAGTCAGTTGCGAGAA 58.757 45.455 9.62 0.00 35.70 2.87
1911 2035 7.243604 AGATCTCAAGAAAAGAGTCACATCT 57.756 36.000 0.00 0.00 34.73 2.90
1945 2069 2.703416 AGAACGCAAATCAGATGCTGA 58.297 42.857 0.00 0.00 44.99 4.26
2019 2143 7.112122 TCTGGCTCAACTTGTATACAATGATT 58.888 34.615 18.35 10.59 35.02 2.57
2169 2294 1.160137 CAAGCTTCCGGAAGTCTTGG 58.840 55.000 39.51 30.31 42.25 3.61
2198 2329 7.687941 TCATGTTAAATCAAAGAGGGTTCTC 57.312 36.000 0.00 0.00 40.25 2.87
2228 2359 7.528996 TTTGGATGATATTTGGGATGACATC 57.471 36.000 6.91 6.91 34.06 3.06
2354 2485 4.529377 AGAGGTACAACTGGACCGATTAAA 59.471 41.667 5.43 0.00 40.91 1.52
2546 2677 6.040166 AGCATCTTACCATTGATCATTGGAAC 59.960 38.462 33.11 17.64 36.13 3.62
2590 2722 8.816894 AGATTGGAAATCTCTACAACTCAGTAA 58.183 33.333 0.00 0.00 0.00 2.24
2995 3148 3.618690 AGTAAAGGATGGTCAGACTGC 57.381 47.619 0.00 0.00 0.00 4.40
3006 3159 5.339008 TGGTCAGACTGCGAATATACTTT 57.661 39.130 0.00 0.00 0.00 2.66
3007 3160 5.109210 TGGTCAGACTGCGAATATACTTTG 58.891 41.667 0.00 0.00 0.00 2.77
3008 3161 5.109903 GGTCAGACTGCGAATATACTTTGT 58.890 41.667 0.00 0.00 0.00 2.83
3013 3166 6.019801 CAGACTGCGAATATACTTTGTGGTAC 60.020 42.308 0.00 0.00 0.00 3.34
3047 3200 8.725405 TTGAAGAAAACATACCGAGCATATTA 57.275 30.769 0.00 0.00 0.00 0.98
3048 3201 8.902540 TGAAGAAAACATACCGAGCATATTAT 57.097 30.769 0.00 0.00 0.00 1.28
3089 3242 3.498018 GGACATTTGTTTTGATTGGGCAC 59.502 43.478 0.00 0.00 0.00 5.01
3143 3305 4.670621 CGAAAGGCATATAATTTGCGTGTC 59.329 41.667 4.17 4.17 41.07 3.67
3156 3318 3.699779 TGCGTGTCTTGCAAATTTGTA 57.300 38.095 19.03 12.46 39.87 2.41
3158 3320 2.400408 GCGTGTCTTGCAAATTTGTACG 59.600 45.455 19.03 17.95 0.00 3.67
3184 3346 6.153851 ACATCTGCTGATTTTCAATCATTCCA 59.846 34.615 2.92 0.00 0.00 3.53
3190 3352 9.187996 TGCTGATTTTCAATCATTCCAGTATAA 57.812 29.630 0.00 0.00 0.00 0.98
3279 3447 4.293729 CAAGTTCACTTGTATGACGACG 57.706 45.455 11.00 0.00 46.11 5.12
3296 3464 2.266554 GACGATTCTGCTGTTCAGGAG 58.733 52.381 13.75 13.75 43.06 3.69
3308 3476 3.993081 CTGTTCAGGAGAGTGCTACTTTG 59.007 47.826 0.00 0.00 31.00 2.77
3316 3485 1.466558 GAGTGCTACTTTGCTTGCCTC 59.533 52.381 0.00 0.00 0.00 4.70
3317 3486 1.202806 AGTGCTACTTTGCTTGCCTCA 60.203 47.619 0.00 0.00 0.00 3.86
3326 3495 0.250467 TGCTTGCCTCACAGAAGGTC 60.250 55.000 0.00 0.00 38.79 3.85
3339 3508 5.362143 TCACAGAAGGTCCATCTAGAGAATG 59.638 44.000 0.00 0.00 0.00 2.67
3341 3510 4.040217 CAGAAGGTCCATCTAGAGAATGGG 59.960 50.000 10.35 1.85 36.18 4.00
3473 3642 4.142790 TGGTTTTAGTTAACATGCCCGAA 58.857 39.130 8.61 0.00 0.00 4.30
3540 3709 0.398664 AAGGGTACTGGAGATCCGGG 60.399 60.000 12.31 1.83 46.75 5.73
3546 3715 3.144120 CTGGAGATCCGGGAGTGCG 62.144 68.421 0.00 0.00 38.76 5.34
3547 3716 2.833582 GGAGATCCGGGAGTGCGA 60.834 66.667 0.00 0.00 0.00 5.10
3548 3717 2.423898 GGAGATCCGGGAGTGCGAA 61.424 63.158 0.00 0.00 0.00 4.70
3584 3753 3.842820 TGATCTGTTCGAGAAAGCTCAG 58.157 45.455 0.00 0.00 41.36 3.35
3597 3766 3.477210 AAGCTCAGAACTCGGAAACTT 57.523 42.857 0.00 0.00 0.00 2.66
3598 3767 3.477210 AGCTCAGAACTCGGAAACTTT 57.523 42.857 0.00 0.00 0.00 2.66
3650 4801 7.143514 AGAAGATTTGAGAATTGAAGACTGC 57.856 36.000 0.00 0.00 0.00 4.40
3661 4812 1.554617 TGAAGACTGCGGATGGATCAA 59.445 47.619 0.00 0.00 0.00 2.57
3683 4837 2.025887 CACAATAGAGGGCCTTCACCTT 60.026 50.000 18.32 4.27 38.79 3.50
3685 4839 2.239654 CAATAGAGGGCCTTCACCTTGA 59.760 50.000 18.32 0.00 38.79 3.02
3698 4852 2.149578 CACCTTGAGAAACTCAGGCAG 58.850 52.381 13.13 5.19 41.75 4.85
3708 4862 4.757149 AGAAACTCAGGCAGTTGAATGTAC 59.243 41.667 0.00 0.00 45.32 2.90
3712 4866 1.129251 CAGGCAGTTGAATGTACGCAG 59.871 52.381 0.00 0.00 0.00 5.18
3721 4875 4.990543 TGAATGTACGCAGAAACTCAAG 57.009 40.909 0.00 0.00 0.00 3.02
3722 4876 4.627058 TGAATGTACGCAGAAACTCAAGA 58.373 39.130 0.00 0.00 0.00 3.02
3723 4877 4.447724 TGAATGTACGCAGAAACTCAAGAC 59.552 41.667 0.00 0.00 0.00 3.01
3725 4879 3.381045 TGTACGCAGAAACTCAAGACTG 58.619 45.455 0.00 0.00 0.00 3.51
3736 4890 4.737855 ACTCAAGACTGCGTGGTATATT 57.262 40.909 0.00 0.00 0.00 1.28
3740 4894 4.891168 TCAAGACTGCGTGGTATATTAGGA 59.109 41.667 0.00 0.00 0.00 2.94
3750 4904 6.708285 CGTGGTATATTAGGAAAGGGCTATT 58.292 40.000 0.00 0.00 0.00 1.73
3757 4911 8.984112 ATATTAGGAAAGGGCTATTACCTACA 57.016 34.615 0.00 0.00 37.35 2.74
3758 4912 6.742559 TTAGGAAAGGGCTATTACCTACAG 57.257 41.667 0.00 0.00 37.35 2.74
3784 4938 7.719633 GCCTCCACTGGATTCACTTATAATTAA 59.280 37.037 0.00 0.00 0.00 1.40
3869 5101 2.622942 TCAAAATTTGAAGTGCGAGGCT 59.377 40.909 5.87 0.00 36.59 4.58
3936 5168 2.903784 TCCCTGCAAGAGCTAGTGTTTA 59.096 45.455 0.00 0.00 42.74 2.01
4079 5311 2.941415 GCTGGTGGAACTGGAAATCGAT 60.941 50.000 0.00 0.00 36.74 3.59
4081 5313 3.758554 CTGGTGGAACTGGAAATCGATTT 59.241 43.478 22.93 22.93 36.74 2.17
4191 5423 3.097614 ACCGATACTTCCAGCAACTAGT 58.902 45.455 0.00 0.00 0.00 2.57
4286 5518 2.115266 CGGTGGTGGGCTCCTTTT 59.885 61.111 0.00 0.00 0.00 2.27
4292 5524 1.228459 GTGGGCTCCTTTTTCCGGT 60.228 57.895 0.00 0.00 0.00 5.28
4309 5541 4.722535 TGCTCCCGCTCCCCTTCT 62.723 66.667 0.00 0.00 36.97 2.85
4312 5544 4.798682 TCCCGCTCCCCTTCTCCC 62.799 72.222 0.00 0.00 0.00 4.30
4330 5562 5.148502 TCTCCCCACTATCCTGTAGAATTC 58.851 45.833 0.00 0.00 0.00 2.17
4332 5564 6.104243 TCTCCCCACTATCCTGTAGAATTCTA 59.896 42.308 11.24 11.24 0.00 2.10
4354 5586 4.240881 TCTAATGGAAGGCTGCTGATTT 57.759 40.909 0.00 0.00 0.00 2.17
4355 5587 4.202441 TCTAATGGAAGGCTGCTGATTTC 58.798 43.478 0.00 0.00 0.00 2.17
4356 5588 1.772836 ATGGAAGGCTGCTGATTTCC 58.227 50.000 15.23 15.23 39.59 3.13
4357 5589 0.700564 TGGAAGGCTGCTGATTTCCT 59.299 50.000 19.76 5.28 39.80 3.36
4358 5590 1.076024 TGGAAGGCTGCTGATTTCCTT 59.924 47.619 19.76 11.92 41.27 3.36
4364 5596 2.287769 GCTGCTGATTTCCTTCTCCTC 58.712 52.381 0.00 0.00 0.00 3.71
4387 5619 4.404394 CCTCCTCCCTTTCTCTCTAACTTC 59.596 50.000 0.00 0.00 0.00 3.01
4388 5620 5.011982 TCCTCCCTTTCTCTCTAACTTCA 57.988 43.478 0.00 0.00 0.00 3.02
4389 5621 4.773149 TCCTCCCTTTCTCTCTAACTTCAC 59.227 45.833 0.00 0.00 0.00 3.18
4390 5622 4.775253 CCTCCCTTTCTCTCTAACTTCACT 59.225 45.833 0.00 0.00 0.00 3.41
4391 5623 5.247337 CCTCCCTTTCTCTCTAACTTCACTT 59.753 44.000 0.00 0.00 0.00 3.16
4392 5624 6.239743 CCTCCCTTTCTCTCTAACTTCACTTT 60.240 42.308 0.00 0.00 0.00 2.66
4393 5625 7.138054 TCCCTTTCTCTCTAACTTCACTTTT 57.862 36.000 0.00 0.00 0.00 2.27
4421 5653 2.488153 GGTAAGTTGCTGCTACCCTTTG 59.512 50.000 10.52 0.00 0.00 2.77
4435 5667 1.762370 CCCTTTGGCTGTTGGTTCTTT 59.238 47.619 0.00 0.00 0.00 2.52
4489 5721 7.736893 ACTCCCTCTGTACCATAATATTTGTC 58.263 38.462 0.00 0.00 0.00 3.18
4505 5737 3.602390 TTGTCGTTTTAGCAGCTCAAC 57.398 42.857 0.00 2.47 0.00 3.18
4506 5738 1.525197 TGTCGTTTTAGCAGCTCAACG 59.475 47.619 24.58 24.58 42.66 4.10
4507 5739 1.790623 GTCGTTTTAGCAGCTCAACGA 59.209 47.619 27.29 27.29 46.46 3.85
4510 5742 4.239304 TCGTTTTAGCAGCTCAACGAATA 58.761 39.130 28.22 14.27 45.86 1.75
4511 5743 4.868171 TCGTTTTAGCAGCTCAACGAATAT 59.132 37.500 28.22 0.00 45.86 1.28
4512 5744 5.350365 TCGTTTTAGCAGCTCAACGAATATT 59.650 36.000 28.22 0.00 45.86 1.28
4513 5745 6.532302 TCGTTTTAGCAGCTCAACGAATATTA 59.468 34.615 28.22 13.20 45.86 0.98
4514 5746 7.223971 TCGTTTTAGCAGCTCAACGAATATTAT 59.776 33.333 28.22 0.00 45.86 1.28
4515 5747 7.318909 CGTTTTAGCAGCTCAACGAATATTATG 59.681 37.037 25.67 2.74 43.73 1.90
4516 5748 6.785488 TTAGCAGCTCAACGAATATTATGG 57.215 37.500 0.00 0.00 0.00 2.74
4517 5749 4.708177 AGCAGCTCAACGAATATTATGGT 58.292 39.130 0.00 0.00 0.00 3.55
4518 5750 5.853936 AGCAGCTCAACGAATATTATGGTA 58.146 37.500 0.00 0.00 0.00 3.25
4519 5751 5.696724 AGCAGCTCAACGAATATTATGGTAC 59.303 40.000 0.00 0.00 0.00 3.34
4550 5782 6.893583 AGTAGAAGATAATGGACTGCAATGT 58.106 36.000 0.00 0.00 0.00 2.71
4576 5808 8.570488 TCTAAATGTATGCTAAATGGCTTGATG 58.430 33.333 0.00 0.00 0.00 3.07
4586 5818 6.927381 GCTAAATGGCTTGATGCTTAATTGAT 59.073 34.615 0.00 0.00 42.39 2.57
4630 5864 5.537674 AGAATAGTCAAACGTATCCCCGTAT 59.462 40.000 0.00 0.00 40.85 3.06
4642 5876 1.309499 CCCCGTATTGGCGCTTTTCA 61.309 55.000 7.64 0.00 35.87 2.69
4650 5884 2.704725 TGGCGCTTTTCAGAAATGAC 57.295 45.000 7.64 1.87 0.00 3.06
4653 5887 2.158841 GGCGCTTTTCAGAAATGACGTA 59.841 45.455 7.64 0.00 0.00 3.57
4654 5888 3.181510 GGCGCTTTTCAGAAATGACGTAT 60.182 43.478 7.64 0.00 0.00 3.06
4656 5890 4.851558 GCGCTTTTCAGAAATGACGTATTT 59.148 37.500 12.00 0.00 41.59 1.40
4657 5891 6.019152 GCGCTTTTCAGAAATGACGTATTTA 58.981 36.000 12.00 0.00 39.06 1.40
4658 5892 6.022484 GCGCTTTTCAGAAATGACGTATTTAC 60.022 38.462 12.00 0.56 39.06 2.01
4659 5893 7.012943 CGCTTTTCAGAAATGACGTATTTACA 58.987 34.615 12.00 0.00 39.06 2.41
4671 5937 9.569167 AATGACGTATTTACATATCAGTATCGG 57.431 33.333 0.00 0.00 0.00 4.18
4695 5961 6.256757 GGTGCAATCTAGACTATGACTGAAAC 59.743 42.308 0.00 0.00 0.00 2.78
4701 6589 4.543590 AGACTATGACTGAAACTGGGTG 57.456 45.455 0.00 0.00 0.00 4.61
4717 6605 1.477923 GGGTGGTTTGCTAGGAACACA 60.478 52.381 16.16 7.62 0.00 3.72
4719 6607 2.890945 GGTGGTTTGCTAGGAACACATT 59.109 45.455 16.16 0.00 0.00 2.71
4732 6620 4.069304 GGAACACATTACTACCTGCACAA 58.931 43.478 0.00 0.00 0.00 3.33
4741 6629 6.547930 TTACTACCTGCACAACATATACCA 57.452 37.500 0.00 0.00 0.00 3.25
4754 6642 5.880054 ACATATACCAGTGTGTTGCTTTC 57.120 39.130 0.00 0.00 0.00 2.62
4770 6658 7.173390 GTGTTGCTTTCTAAGGTATTCTTCTGT 59.827 37.037 0.00 0.00 36.93 3.41
4816 6715 3.885297 GCAGTTGTATCATTGTAGGCCAT 59.115 43.478 5.01 0.00 0.00 4.40
5062 6964 4.620589 ATCTCTCTGCCATATCAACCAG 57.379 45.455 0.00 0.00 0.00 4.00
5082 6984 2.044353 AGGGCATTGGATGGTAAACCTT 59.956 45.455 0.02 0.00 36.82 3.50
5153 7055 8.699130 AGAAAGATGATTATTTTCCATTCCCAC 58.301 33.333 0.00 0.00 32.59 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 5.005740 AGATGAATTGTTTAGAGCTGCACA 58.994 37.500 1.02 0.00 0.00 4.57
104 105 5.648178 TGTGCAGCAAATAGATGAATTGT 57.352 34.783 0.00 0.00 35.00 2.71
204 206 4.389576 GCACTTGCCTCCGTTGCG 62.390 66.667 0.00 0.00 34.31 4.85
461 463 8.848474 AATGTTCAATAGGACGGGAATATTAG 57.152 34.615 0.00 0.00 31.93 1.73
462 464 7.881232 GGAATGTTCAATAGGACGGGAATATTA 59.119 37.037 0.00 0.00 33.23 0.98
505 507 1.151777 ATCTCGCGCGGTGTATTTGG 61.152 55.000 31.69 8.84 0.00 3.28
506 508 1.452025 CTATCTCGCGCGGTGTATTTG 59.548 52.381 31.69 9.09 0.00 2.32
507 509 1.767289 CTATCTCGCGCGGTGTATTT 58.233 50.000 31.69 10.46 0.00 1.40
508 510 0.663568 GCTATCTCGCGCGGTGTATT 60.664 55.000 31.69 11.55 0.00 1.89
509 511 1.081376 GCTATCTCGCGCGGTGTAT 60.081 57.895 31.69 19.28 0.00 2.29
510 512 2.330393 GCTATCTCGCGCGGTGTA 59.670 61.111 31.69 17.93 0.00 2.90
528 530 2.665185 GGGCGCATGGTCGGATAC 60.665 66.667 10.83 0.00 0.00 2.24
529 531 2.736826 TTGGGCGCATGGTCGGATA 61.737 57.895 10.83 0.00 0.00 2.59
530 532 4.108299 TTGGGCGCATGGTCGGAT 62.108 61.111 10.83 0.00 0.00 4.18
533 535 3.499737 GAGTTGGGCGCATGGTCG 61.500 66.667 10.83 0.00 0.00 4.79
534 536 3.134127 GGAGTTGGGCGCATGGTC 61.134 66.667 10.83 1.59 0.00 4.02
535 537 1.847798 TAAGGAGTTGGGCGCATGGT 61.848 55.000 10.83 0.00 0.00 3.55
536 538 0.466189 ATAAGGAGTTGGGCGCATGG 60.466 55.000 10.83 0.00 0.00 3.66
537 539 1.873591 GTATAAGGAGTTGGGCGCATG 59.126 52.381 10.83 0.00 0.00 4.06
538 540 1.202770 GGTATAAGGAGTTGGGCGCAT 60.203 52.381 10.83 0.00 0.00 4.73
539 541 0.179468 GGTATAAGGAGTTGGGCGCA 59.821 55.000 10.83 0.00 0.00 6.09
540 542 0.878961 CGGTATAAGGAGTTGGGCGC 60.879 60.000 0.00 0.00 0.00 6.53
541 543 0.878961 GCGGTATAAGGAGTTGGGCG 60.879 60.000 0.00 0.00 0.00 6.13
542 544 0.878961 CGCGGTATAAGGAGTTGGGC 60.879 60.000 0.00 0.00 0.00 5.36
543 545 0.249741 CCGCGGTATAAGGAGTTGGG 60.250 60.000 19.50 0.00 0.00 4.12
544 546 0.249741 CCCGCGGTATAAGGAGTTGG 60.250 60.000 26.12 0.00 0.00 3.77
545 547 0.878961 GCCCGCGGTATAAGGAGTTG 60.879 60.000 26.12 4.68 0.00 3.16
546 548 1.444672 GCCCGCGGTATAAGGAGTT 59.555 57.895 26.12 0.00 0.00 3.01
547 549 2.853290 CGCCCGCGGTATAAGGAGT 61.853 63.158 26.12 0.00 35.56 3.85
548 550 2.049433 CGCCCGCGGTATAAGGAG 60.049 66.667 26.12 6.93 35.56 3.69
549 551 4.289245 GCGCCCGCGGTATAAGGA 62.289 66.667 26.12 0.00 40.19 3.36
589 591 4.114997 GCACAATTCGCCGGGTGG 62.115 66.667 2.18 0.00 38.77 4.61
590 592 4.459331 CGCACAATTCGCCGGGTG 62.459 66.667 2.18 0.00 0.00 4.61
605 607 0.042535 TATGTCATTTTAGCGCGCGC 60.043 50.000 45.10 45.10 42.33 6.86
606 608 2.577300 ATATGTCATTTTAGCGCGCG 57.423 45.000 28.44 28.44 0.00 6.86
607 609 5.164415 CGTAAAATATGTCATTTTAGCGCGC 60.164 40.000 26.66 26.66 35.08 6.86
608 610 5.335949 CCGTAAAATATGTCATTTTAGCGCG 59.664 40.000 0.00 0.00 35.08 6.86
609 611 5.115021 GCCGTAAAATATGTCATTTTAGCGC 59.885 40.000 0.00 0.00 35.08 5.92
610 612 5.335949 CGCCGTAAAATATGTCATTTTAGCG 59.664 40.000 15.41 15.41 39.42 4.26
611 613 5.115021 GCGCCGTAAAATATGTCATTTTAGC 59.885 40.000 0.00 4.04 35.08 3.09
612 614 5.335949 CGCGCCGTAAAATATGTCATTTTAG 59.664 40.000 0.00 0.00 35.08 1.85
613 615 5.006455 TCGCGCCGTAAAATATGTCATTTTA 59.994 36.000 0.00 0.00 33.73 1.52
614 616 4.032355 CGCGCCGTAAAATATGTCATTTT 58.968 39.130 0.00 1.12 35.62 1.82
615 617 3.310227 TCGCGCCGTAAAATATGTCATTT 59.690 39.130 0.00 0.00 0.00 2.32
616 618 2.867368 TCGCGCCGTAAAATATGTCATT 59.133 40.909 0.00 0.00 0.00 2.57
617 619 2.220133 GTCGCGCCGTAAAATATGTCAT 59.780 45.455 0.00 0.00 0.00 3.06
618 620 1.589320 GTCGCGCCGTAAAATATGTCA 59.411 47.619 0.00 0.00 0.00 3.58
619 621 1.589320 TGTCGCGCCGTAAAATATGTC 59.411 47.619 0.00 0.00 0.00 3.06
620 622 1.325338 GTGTCGCGCCGTAAAATATGT 59.675 47.619 0.00 0.00 0.00 2.29
621 623 1.591158 AGTGTCGCGCCGTAAAATATG 59.409 47.619 0.00 0.00 0.00 1.78
622 624 1.930567 AGTGTCGCGCCGTAAAATAT 58.069 45.000 0.00 0.00 0.00 1.28
623 625 1.390803 CAAGTGTCGCGCCGTAAAATA 59.609 47.619 0.00 0.00 0.00 1.40
624 626 0.165079 CAAGTGTCGCGCCGTAAAAT 59.835 50.000 0.00 0.00 0.00 1.82
625 627 1.152989 ACAAGTGTCGCGCCGTAAAA 61.153 50.000 0.00 0.00 0.00 1.52
626 628 1.152989 AACAAGTGTCGCGCCGTAAA 61.153 50.000 0.00 0.00 0.00 2.01
627 629 1.152989 AAACAAGTGTCGCGCCGTAA 61.153 50.000 0.00 0.00 0.00 3.18
628 630 0.318529 TAAACAAGTGTCGCGCCGTA 60.319 50.000 0.00 0.00 0.00 4.02
629 631 1.554042 CTAAACAAGTGTCGCGCCGT 61.554 55.000 0.00 0.00 0.00 5.68
630 632 1.129809 CTAAACAAGTGTCGCGCCG 59.870 57.895 0.00 0.00 0.00 6.46
631 633 1.154469 GCTAAACAAGTGTCGCGCC 60.154 57.895 0.00 0.00 0.00 6.53
632 634 1.507096 CGCTAAACAAGTGTCGCGC 60.507 57.895 0.00 0.00 34.37 6.86
633 635 1.507096 GCGCTAAACAAGTGTCGCG 60.507 57.895 0.00 0.00 39.96 5.87
634 636 1.507096 CGCGCTAAACAAGTGTCGC 60.507 57.895 5.56 5.46 38.05 5.19
635 637 1.129809 CCGCGCTAAACAAGTGTCG 59.870 57.895 5.56 0.00 38.05 4.35
636 638 1.154469 GCCGCGCTAAACAAGTGTC 60.154 57.895 5.56 0.00 38.05 3.67
637 639 1.597027 AGCCGCGCTAAACAAGTGT 60.597 52.632 5.56 0.00 36.99 3.55
638 640 1.154413 CAGCCGCGCTAAACAAGTG 60.154 57.895 5.56 0.00 36.40 3.16
639 641 1.164041 AACAGCCGCGCTAAACAAGT 61.164 50.000 5.56 0.00 36.40 3.16
640 642 0.725784 CAACAGCCGCGCTAAACAAG 60.726 55.000 5.56 0.00 36.40 3.16
641 643 1.281353 CAACAGCCGCGCTAAACAA 59.719 52.632 5.56 0.00 36.40 2.83
642 644 2.612567 CCAACAGCCGCGCTAAACA 61.613 57.895 5.56 0.00 36.40 2.83
643 645 2.175811 CCAACAGCCGCGCTAAAC 59.824 61.111 5.56 0.00 36.40 2.01
644 646 2.031314 TCCAACAGCCGCGCTAAA 59.969 55.556 5.56 0.00 36.40 1.85
645 647 2.238847 ATCTCCAACAGCCGCGCTAA 62.239 55.000 5.56 0.00 36.40 3.09
646 648 1.388837 TATCTCCAACAGCCGCGCTA 61.389 55.000 5.56 0.00 36.40 4.26
647 649 2.721167 TATCTCCAACAGCCGCGCT 61.721 57.895 5.56 0.00 40.77 5.92
648 650 2.202878 TATCTCCAACAGCCGCGC 60.203 61.111 0.00 0.00 0.00 6.86
649 651 0.872021 GAGTATCTCCAACAGCCGCG 60.872 60.000 0.00 0.00 0.00 6.46
650 652 2.979130 GAGTATCTCCAACAGCCGC 58.021 57.895 0.00 0.00 0.00 6.53
662 664 2.231529 TCGGGCTGAGCTAAGAGTATC 58.768 52.381 0.74 0.00 0.00 2.24
663 665 2.366640 TCGGGCTGAGCTAAGAGTAT 57.633 50.000 0.74 0.00 0.00 2.12
664 666 2.025155 CTTCGGGCTGAGCTAAGAGTA 58.975 52.381 0.74 0.00 0.00 2.59
665 667 0.820871 CTTCGGGCTGAGCTAAGAGT 59.179 55.000 0.74 0.00 0.00 3.24
666 668 1.107114 TCTTCGGGCTGAGCTAAGAG 58.893 55.000 0.74 0.00 0.00 2.85
667 669 1.781786 ATCTTCGGGCTGAGCTAAGA 58.218 50.000 15.74 15.74 0.00 2.10
668 670 2.102252 AGAATCTTCGGGCTGAGCTAAG 59.898 50.000 3.72 6.41 0.00 2.18
669 671 2.111384 AGAATCTTCGGGCTGAGCTAA 58.889 47.619 3.72 0.00 0.00 3.09
670 672 1.410517 CAGAATCTTCGGGCTGAGCTA 59.589 52.381 3.72 0.00 0.00 3.32
671 673 0.177604 CAGAATCTTCGGGCTGAGCT 59.822 55.000 3.72 0.00 0.00 4.09
672 674 1.435408 GCAGAATCTTCGGGCTGAGC 61.435 60.000 0.00 0.00 32.25 4.26
673 675 0.177604 AGCAGAATCTTCGGGCTGAG 59.822 55.000 10.11 0.00 39.84 3.35
674 676 0.176680 GAGCAGAATCTTCGGGCTGA 59.823 55.000 14.13 0.00 40.84 4.26
675 677 0.813210 GGAGCAGAATCTTCGGGCTG 60.813 60.000 14.13 0.00 40.84 4.85
676 678 1.524482 GGAGCAGAATCTTCGGGCT 59.476 57.895 10.53 10.53 42.50 5.19
677 679 1.524849 GGGAGCAGAATCTTCGGGC 60.525 63.158 0.00 2.64 34.18 6.13
678 680 0.543749 AAGGGAGCAGAATCTTCGGG 59.456 55.000 0.00 0.00 0.00 5.14
679 681 2.409948 AAAGGGAGCAGAATCTTCGG 57.590 50.000 0.00 0.00 0.00 4.30
680 682 3.373439 CAGAAAAGGGAGCAGAATCTTCG 59.627 47.826 0.00 0.00 0.00 3.79
681 683 3.128415 GCAGAAAAGGGAGCAGAATCTTC 59.872 47.826 0.00 0.00 0.00 2.87
682 684 3.087781 GCAGAAAAGGGAGCAGAATCTT 58.912 45.455 0.00 0.00 0.00 2.40
683 685 2.308275 AGCAGAAAAGGGAGCAGAATCT 59.692 45.455 0.00 0.00 0.00 2.40
684 686 2.682352 GAGCAGAAAAGGGAGCAGAATC 59.318 50.000 0.00 0.00 0.00 2.52
685 687 2.308275 AGAGCAGAAAAGGGAGCAGAAT 59.692 45.455 0.00 0.00 0.00 2.40
686 688 1.701847 AGAGCAGAAAAGGGAGCAGAA 59.298 47.619 0.00 0.00 0.00 3.02
687 689 1.356124 AGAGCAGAAAAGGGAGCAGA 58.644 50.000 0.00 0.00 0.00 4.26
688 690 2.903798 CTAGAGCAGAAAAGGGAGCAG 58.096 52.381 0.00 0.00 0.00 4.24
689 691 1.065854 GCTAGAGCAGAAAAGGGAGCA 60.066 52.381 0.00 0.00 41.59 4.26
690 692 1.209261 AGCTAGAGCAGAAAAGGGAGC 59.791 52.381 4.01 0.00 45.16 4.70
691 693 3.530535 GAAGCTAGAGCAGAAAAGGGAG 58.469 50.000 4.01 0.00 45.16 4.30
692 694 2.093973 CGAAGCTAGAGCAGAAAAGGGA 60.094 50.000 4.01 0.00 45.16 4.20
693 695 2.275318 CGAAGCTAGAGCAGAAAAGGG 58.725 52.381 4.01 0.00 45.16 3.95
694 696 2.966050 ACGAAGCTAGAGCAGAAAAGG 58.034 47.619 4.01 0.00 45.16 3.11
695 697 4.091220 CAGAACGAAGCTAGAGCAGAAAAG 59.909 45.833 4.01 0.00 45.16 2.27
696 698 3.990469 CAGAACGAAGCTAGAGCAGAAAA 59.010 43.478 4.01 0.00 45.16 2.29
697 699 3.255888 TCAGAACGAAGCTAGAGCAGAAA 59.744 43.478 4.01 0.00 45.16 2.52
698 700 2.820197 TCAGAACGAAGCTAGAGCAGAA 59.180 45.455 4.01 0.00 45.16 3.02
699 701 2.421775 CTCAGAACGAAGCTAGAGCAGA 59.578 50.000 4.01 0.00 45.16 4.26
700 702 2.421775 TCTCAGAACGAAGCTAGAGCAG 59.578 50.000 4.01 0.00 45.16 4.24
701 703 2.437413 TCTCAGAACGAAGCTAGAGCA 58.563 47.619 4.01 0.00 45.16 4.26
702 704 3.708563 ATCTCAGAACGAAGCTAGAGC 57.291 47.619 0.00 0.00 42.49 4.09
703 705 6.198687 CAACTATCTCAGAACGAAGCTAGAG 58.801 44.000 0.00 0.00 0.00 2.43
704 706 5.066634 CCAACTATCTCAGAACGAAGCTAGA 59.933 44.000 0.00 0.00 0.00 2.43
705 707 5.163602 ACCAACTATCTCAGAACGAAGCTAG 60.164 44.000 0.00 0.00 0.00 3.42
706 708 4.705507 ACCAACTATCTCAGAACGAAGCTA 59.294 41.667 0.00 0.00 0.00 3.32
707 709 3.511934 ACCAACTATCTCAGAACGAAGCT 59.488 43.478 0.00 0.00 0.00 3.74
708 710 3.614616 CACCAACTATCTCAGAACGAAGC 59.385 47.826 0.00 0.00 0.00 3.86
709 711 4.177026 CCACCAACTATCTCAGAACGAAG 58.823 47.826 0.00 0.00 0.00 3.79
710 712 3.576982 ACCACCAACTATCTCAGAACGAA 59.423 43.478 0.00 0.00 0.00 3.85
711 713 3.162666 ACCACCAACTATCTCAGAACGA 58.837 45.455 0.00 0.00 0.00 3.85
712 714 3.594603 ACCACCAACTATCTCAGAACG 57.405 47.619 0.00 0.00 0.00 3.95
713 715 6.038997 AGTAACCACCAACTATCTCAGAAC 57.961 41.667 0.00 0.00 0.00 3.01
714 716 6.042781 ACAAGTAACCACCAACTATCTCAGAA 59.957 38.462 0.00 0.00 0.00 3.02
715 717 5.542635 ACAAGTAACCACCAACTATCTCAGA 59.457 40.000 0.00 0.00 0.00 3.27
716 718 5.794894 ACAAGTAACCACCAACTATCTCAG 58.205 41.667 0.00 0.00 0.00 3.35
717 719 5.305902 TGACAAGTAACCACCAACTATCTCA 59.694 40.000 0.00 0.00 0.00 3.27
718 720 5.790593 TGACAAGTAACCACCAACTATCTC 58.209 41.667 0.00 0.00 0.00 2.75
719 721 5.818678 TGACAAGTAACCACCAACTATCT 57.181 39.130 0.00 0.00 0.00 1.98
720 722 6.870971 TTTGACAAGTAACCACCAACTATC 57.129 37.500 0.00 0.00 0.00 2.08
721 723 7.648039 TTTTTGACAAGTAACCACCAACTAT 57.352 32.000 0.00 0.00 0.00 2.12
723 725 5.986501 TTTTTGACAAGTAACCACCAACT 57.013 34.783 0.00 0.00 0.00 3.16
742 744 5.694995 TCTCTGAAATGACCTCCACTTTTT 58.305 37.500 0.00 0.00 0.00 1.94
743 745 5.310409 TCTCTGAAATGACCTCCACTTTT 57.690 39.130 0.00 0.00 0.00 2.27
744 746 4.982241 TCTCTGAAATGACCTCCACTTT 57.018 40.909 0.00 0.00 0.00 2.66
782 784 7.032377 AGAAGGTTTCAGACTGAATTTGTTC 57.968 36.000 18.38 16.62 36.11 3.18
785 787 7.269477 AGAAGAAGGTTTCAGACTGAATTTG 57.731 36.000 18.38 0.00 36.11 2.32
825 842 3.967335 GGTAGGCGAGCGAGCGAT 61.967 66.667 1.41 0.00 38.18 4.58
838 855 2.345991 CCACACCCACACCGGTAG 59.654 66.667 6.87 4.38 33.67 3.18
839 856 2.446227 ACCACACCCACACCGGTA 60.446 61.111 6.87 0.00 33.67 4.02
845 862 1.723288 TACATCAGACCACACCCACA 58.277 50.000 0.00 0.00 0.00 4.17
846 863 2.851263 TTACATCAGACCACACCCAC 57.149 50.000 0.00 0.00 0.00 4.61
847 864 3.055167 CAGATTACATCAGACCACACCCA 60.055 47.826 0.00 0.00 0.00 4.51
848 865 3.197766 TCAGATTACATCAGACCACACCC 59.802 47.826 0.00 0.00 0.00 4.61
849 866 4.471904 TCAGATTACATCAGACCACACC 57.528 45.455 0.00 0.00 0.00 4.16
850 867 5.482908 ACTTCAGATTACATCAGACCACAC 58.517 41.667 0.00 0.00 0.00 3.82
851 868 5.745312 ACTTCAGATTACATCAGACCACA 57.255 39.130 0.00 0.00 0.00 4.17
852 869 6.312426 CAGAACTTCAGATTACATCAGACCAC 59.688 42.308 0.00 0.00 0.00 4.16
853 870 6.211384 TCAGAACTTCAGATTACATCAGACCA 59.789 38.462 0.00 0.00 0.00 4.02
854 871 6.634805 TCAGAACTTCAGATTACATCAGACC 58.365 40.000 0.00 0.00 0.00 3.85
855 872 7.064016 GGTTCAGAACTTCAGATTACATCAGAC 59.936 40.741 13.13 0.00 0.00 3.51
856 873 7.099764 GGTTCAGAACTTCAGATTACATCAGA 58.900 38.462 13.13 0.00 0.00 3.27
857 874 6.314896 GGGTTCAGAACTTCAGATTACATCAG 59.685 42.308 13.13 0.00 0.00 2.90
858 875 6.173339 GGGTTCAGAACTTCAGATTACATCA 58.827 40.000 13.13 0.00 0.00 3.07
859 876 5.586643 GGGGTTCAGAACTTCAGATTACATC 59.413 44.000 13.13 0.00 0.00 3.06
860 877 5.251700 AGGGGTTCAGAACTTCAGATTACAT 59.748 40.000 13.13 0.00 0.00 2.29
861 878 4.597507 AGGGGTTCAGAACTTCAGATTACA 59.402 41.667 13.13 0.00 0.00 2.41
862 879 5.167303 AGGGGTTCAGAACTTCAGATTAC 57.833 43.478 13.13 0.00 0.00 1.89
863 880 5.568825 CGAAGGGGTTCAGAACTTCAGATTA 60.569 44.000 13.13 0.00 39.33 1.75
864 881 4.657013 GAAGGGGTTCAGAACTTCAGATT 58.343 43.478 13.13 0.82 39.22 2.40
865 882 3.307059 CGAAGGGGTTCAGAACTTCAGAT 60.307 47.826 13.13 0.00 39.33 2.90
866 883 2.037251 CGAAGGGGTTCAGAACTTCAGA 59.963 50.000 13.13 0.00 39.33 3.27
873 890 1.275291 CAGCTACGAAGGGGTTCAGAA 59.725 52.381 0.00 0.00 0.00 3.02
881 898 1.017387 GATTTGGCAGCTACGAAGGG 58.983 55.000 0.00 0.00 0.00 3.95
885 910 2.742053 GAGTTTGATTTGGCAGCTACGA 59.258 45.455 0.00 0.00 0.00 3.43
886 911 2.474526 CGAGTTTGATTTGGCAGCTACG 60.475 50.000 0.00 0.00 0.00 3.51
888 913 2.083774 CCGAGTTTGATTTGGCAGCTA 58.916 47.619 0.00 0.00 0.00 3.32
889 914 0.883833 CCGAGTTTGATTTGGCAGCT 59.116 50.000 0.00 0.00 0.00 4.24
890 915 0.598065 ACCGAGTTTGATTTGGCAGC 59.402 50.000 0.00 0.00 0.00 5.25
891 916 1.200020 GGACCGAGTTTGATTTGGCAG 59.800 52.381 0.00 0.00 0.00 4.85
892 917 1.243902 GGACCGAGTTTGATTTGGCA 58.756 50.000 0.00 0.00 0.00 4.92
894 919 2.200373 AGGGACCGAGTTTGATTTGG 57.800 50.000 0.00 0.00 0.00 3.28
895 920 3.127030 GCTAAGGGACCGAGTTTGATTTG 59.873 47.826 0.00 0.00 0.00 2.32
931 961 2.352805 GGGAGTGGGGAAGCACTG 59.647 66.667 0.00 0.00 0.00 3.66
943 973 3.745803 GAAGACGACGGCGGGAGT 61.746 66.667 18.49 7.97 43.17 3.85
951 981 1.514443 GCGAGGGAAGAAGACGACG 60.514 63.158 0.00 0.00 0.00 5.12
952 982 1.153804 GGCGAGGGAAGAAGACGAC 60.154 63.158 0.00 0.00 0.00 4.34
1022 1060 3.729965 ATCGCGGCCTGCAGAGAAG 62.730 63.158 17.39 4.66 46.97 2.85
1035 1079 2.421835 GAAGCAGCCATCGAATCGCG 62.422 60.000 0.00 0.00 42.69 5.87
1089 1136 3.943479 TTGGCGAATCCACCCGTCG 62.943 63.158 0.00 0.00 46.55 5.12
1126 1173 0.847373 TCGTCTCTGAGCCCCTCTAT 59.153 55.000 0.00 0.00 0.00 1.98
1140 1187 1.435515 GGCTTGCTCGATCTCGTCT 59.564 57.895 0.00 0.00 40.80 4.18
1194 1241 1.363744 CCAGCGACCTGTTTCTGATC 58.636 55.000 0.00 0.00 37.38 2.92
1312 1371 0.460987 GAGGACGGATGTTGAGGCAG 60.461 60.000 0.00 0.00 0.00 4.85
1318 1377 0.321564 TGCTTGGAGGACGGATGTTG 60.322 55.000 0.00 0.00 0.00 3.33
1430 1498 2.684655 GGTGCCAATGCCATGGGT 60.685 61.111 15.13 0.00 41.01 4.51
1546 1637 3.364889 TCACACTGGACTGTTTACTCG 57.635 47.619 0.00 0.00 0.00 4.18
1561 1655 2.488153 GGGTTGGCTGTTAGAATCACAC 59.512 50.000 0.00 0.00 0.00 3.82
1573 1667 2.442236 AATATGGAGTGGGTTGGCTG 57.558 50.000 0.00 0.00 0.00 4.85
1597 1691 0.970640 TGCATTTCTGGTGCAGCATT 59.029 45.000 20.52 1.97 46.76 3.56
1598 1692 2.661054 TGCATTTCTGGTGCAGCAT 58.339 47.368 20.52 0.62 46.76 3.79
1599 1693 4.177673 TGCATTTCTGGTGCAGCA 57.822 50.000 19.03 19.03 46.76 4.41
1603 1697 0.316204 AGCAGTTGCATTTCTGGTGC 59.684 50.000 14.66 5.11 45.16 5.01
1605 1699 1.985473 TCAGCAGTTGCATTTCTGGT 58.015 45.000 6.90 11.20 45.16 4.00
1606 1700 3.693085 ACTATCAGCAGTTGCATTTCTGG 59.307 43.478 6.90 2.00 45.16 3.86
1607 1701 4.959596 ACTATCAGCAGTTGCATTTCTG 57.040 40.909 6.90 8.92 45.16 3.02
1608 1702 5.005740 TGAACTATCAGCAGTTGCATTTCT 58.994 37.500 6.90 0.00 45.16 2.52
1609 1703 5.300969 TGAACTATCAGCAGTTGCATTTC 57.699 39.130 6.90 0.00 45.16 2.17
1627 1735 6.391227 TTCTCCTTTTTCTTGTGGATGAAC 57.609 37.500 0.00 0.00 0.00 3.18
1636 1744 4.331108 CTCTCCCCTTCTCCTTTTTCTTG 58.669 47.826 0.00 0.00 0.00 3.02
1655 1763 3.591527 TGGGGACATATGTTGAAACCTCT 59.408 43.478 10.30 0.00 33.40 3.69
1660 1768 3.088532 GCTGTGGGGACATATGTTGAAA 58.911 45.455 10.30 0.00 46.14 2.69
1668 1776 0.037590 GTGTTGGCTGTGGGGACATA 59.962 55.000 0.00 0.00 46.14 2.29
1720 1828 5.194432 ACTGACTCGTTATGTCCTGTATCT 58.806 41.667 0.00 0.00 33.83 1.98
1727 1835 1.654105 CGCAACTGACTCGTTATGTCC 59.346 52.381 0.00 0.00 33.83 4.02
1736 1844 1.656095 CGGATTTCTCGCAACTGACTC 59.344 52.381 0.00 0.00 0.00 3.36
1751 1859 2.125673 CGCACGTTCCCTCGGATT 60.126 61.111 0.00 0.00 34.94 3.01
1911 2035 8.779303 TGATTTGCGTTCTTTTATCAACTCTAA 58.221 29.630 0.00 0.00 0.00 2.10
1945 2069 2.233271 CAATTGGCAGAACAGTCACCT 58.767 47.619 0.00 0.00 0.00 4.00
2019 2143 5.707298 GGTCAAATTGACTCTCCAAATCTGA 59.293 40.000 23.30 0.00 46.19 3.27
2169 2294 6.830838 ACCCTCTTTGATTTAACATGATCCTC 59.169 38.462 0.00 0.00 0.00 3.71
2198 2329 9.092338 TCATCCCAAATATCATCCAAAATAAGG 57.908 33.333 0.00 0.00 0.00 2.69
2228 2359 0.887247 TGTTCCATTGGCAATCACGG 59.113 50.000 10.36 9.22 0.00 4.94
2229 2360 2.721274 TTGTTCCATTGGCAATCACG 57.279 45.000 10.36 0.00 0.00 4.35
2292 2423 6.385033 ACGGTATTCTAGTTGTCACAAGTAC 58.615 40.000 0.52 0.00 0.00 2.73
2590 2722 2.730382 TCAAAGCAGACATGATGCCAT 58.270 42.857 19.39 9.74 44.97 4.40
2995 3148 7.974501 ACTTCTCAGTACCACAAAGTATATTCG 59.025 37.037 0.00 0.00 0.00 3.34
3006 3159 5.607939 TCTTCAAACTTCTCAGTACCACA 57.392 39.130 0.00 0.00 30.68 4.17
3007 3160 6.920569 TTTCTTCAAACTTCTCAGTACCAC 57.079 37.500 0.00 0.00 30.68 4.16
3008 3161 6.882140 TGTTTTCTTCAAACTTCTCAGTACCA 59.118 34.615 0.00 0.00 44.68 3.25
3013 3166 7.042051 TCGGTATGTTTTCTTCAAACTTCTCAG 60.042 37.037 0.00 0.00 44.68 3.35
3037 3190 4.248058 TGCCACTGATGATAATATGCTCG 58.752 43.478 0.00 0.00 0.00 5.03
3143 3305 4.321745 GCAGATGTCGTACAAATTTGCAAG 59.678 41.667 18.12 8.01 30.16 4.01
3154 3316 5.530519 TTGAAAATCAGCAGATGTCGTAC 57.469 39.130 0.00 0.00 33.90 3.67
3156 3318 4.696877 TGATTGAAAATCAGCAGATGTCGT 59.303 37.500 0.00 0.00 33.90 4.34
3158 3320 6.696148 GGAATGATTGAAAATCAGCAGATGTC 59.304 38.462 8.50 0.00 33.90 3.06
3194 3356 9.265901 AGACATCGAAGATGTATAAAATTCAGG 57.734 33.333 14.69 0.00 45.12 3.86
3217 3379 5.048083 TCAACATGGCCATCAAGTTTTAGAC 60.048 40.000 17.61 0.00 35.40 2.59
3296 3464 1.466558 GAGGCAAGCAAAGTAGCACTC 59.533 52.381 0.00 0.00 36.85 3.51
3308 3476 0.957888 GGACCTTCTGTGAGGCAAGC 60.958 60.000 0.00 0.00 40.65 4.01
3316 3485 5.453057 CCATTCTCTAGATGGACCTTCTGTG 60.453 48.000 18.02 11.43 37.66 3.66
3317 3486 4.653341 CCATTCTCTAGATGGACCTTCTGT 59.347 45.833 18.02 0.00 37.66 3.41
3326 3495 3.266477 TCTCCCCCATTCTCTAGATGG 57.734 52.381 4.13 4.13 35.31 3.51
3339 3508 0.178961 ACCACTTGCTTTTCTCCCCC 60.179 55.000 0.00 0.00 0.00 5.40
3341 3510 2.587522 AGAACCACTTGCTTTTCTCCC 58.412 47.619 0.00 0.00 0.00 4.30
3473 3642 2.575279 AGTGCAGGAACATCTCTCCAAT 59.425 45.455 0.00 0.00 35.20 3.16
3584 3753 3.364068 GCTGTAGCAAAGTTTCCGAGTTC 60.364 47.826 0.00 0.00 41.59 3.01
3597 3766 1.456296 CAGGAATGCAGCTGTAGCAA 58.544 50.000 16.64 0.00 46.27 3.91
3626 4777 6.128336 CGCAGTCTTCAATTCTCAAATCTTCT 60.128 38.462 0.00 0.00 0.00 2.85
3650 4801 4.060900 CCTCTATTGTGTTGATCCATCCG 58.939 47.826 0.00 0.00 0.00 4.18
3661 4812 1.282157 GGTGAAGGCCCTCTATTGTGT 59.718 52.381 0.00 0.00 0.00 3.72
3683 4837 3.558931 TTCAACTGCCTGAGTTTCTCA 57.441 42.857 0.00 0.00 42.70 3.27
3685 4839 3.825328 ACATTCAACTGCCTGAGTTTCT 58.175 40.909 0.00 0.00 42.70 2.52
3698 4852 4.725556 TGAGTTTCTGCGTACATTCAAC 57.274 40.909 0.00 0.00 0.00 3.18
3712 4866 1.583054 ACCACGCAGTCTTGAGTTTC 58.417 50.000 0.00 0.00 41.61 2.78
3721 4875 4.989168 CCTTTCCTAATATACCACGCAGTC 59.011 45.833 0.00 0.00 41.61 3.51
3723 4877 4.315803 CCCTTTCCTAATATACCACGCAG 58.684 47.826 0.00 0.00 0.00 5.18
3725 4879 3.072211 GCCCTTTCCTAATATACCACGC 58.928 50.000 0.00 0.00 0.00 5.34
3736 4890 4.591924 GCTGTAGGTAATAGCCCTTTCCTA 59.408 45.833 0.00 0.00 33.35 2.94
3750 4904 0.708209 TCCAGTGGAGGCTGTAGGTA 59.292 55.000 8.12 0.00 34.84 3.08
3756 4910 0.617413 AGTGAATCCAGTGGAGGCTG 59.383 55.000 18.69 0.00 34.05 4.85
3757 4911 1.366319 AAGTGAATCCAGTGGAGGCT 58.634 50.000 18.69 9.55 34.05 4.58
3758 4912 3.567478 ATAAGTGAATCCAGTGGAGGC 57.433 47.619 18.69 12.18 34.05 4.70
3784 4938 4.710375 ACGTGGTAAGGACAGATAACTCAT 59.290 41.667 0.00 0.00 0.00 2.90
3788 5020 4.445452 TGACGTGGTAAGGACAGATAAC 57.555 45.455 0.00 0.00 0.00 1.89
3791 5023 3.769844 AGATTGACGTGGTAAGGACAGAT 59.230 43.478 0.00 0.00 0.00 2.90
3795 5027 2.000447 GCAGATTGACGTGGTAAGGAC 59.000 52.381 0.00 0.00 0.00 3.85
3869 5101 7.578203 TCTCTTGATCATCTGTTAGTCTCCTA 58.422 38.462 0.00 0.00 0.00 2.94
3936 5168 2.939640 GCACGAGGTACCCACAATCATT 60.940 50.000 8.74 0.00 0.00 2.57
4079 5311 1.919918 CCAACTCAACGCTGCAAAAA 58.080 45.000 0.00 0.00 0.00 1.94
4081 5313 1.065600 GCCAACTCAACGCTGCAAA 59.934 52.632 0.00 0.00 0.00 3.68
4248 5480 2.498078 GGCACTACTAAAGCCTGAGAGT 59.502 50.000 0.00 0.00 44.92 3.24
4307 5539 4.834406 ATTCTACAGGATAGTGGGGAGA 57.166 45.455 0.00 0.00 0.00 3.71
4309 5541 5.157770 AGAATTCTACAGGATAGTGGGGA 57.842 43.478 6.06 0.00 0.00 4.81
4330 5562 4.613925 TCAGCAGCCTTCCATTAGATAG 57.386 45.455 0.00 0.00 0.00 2.08
4332 5564 4.450305 AATCAGCAGCCTTCCATTAGAT 57.550 40.909 0.00 0.00 0.00 1.98
4354 5586 0.556380 AGGGAGGAGGAGGAGAAGGA 60.556 60.000 0.00 0.00 0.00 3.36
4355 5587 0.341609 AAGGGAGGAGGAGGAGAAGG 59.658 60.000 0.00 0.00 0.00 3.46
4356 5588 2.115427 GAAAGGGAGGAGGAGGAGAAG 58.885 57.143 0.00 0.00 0.00 2.85
4357 5589 1.725182 AGAAAGGGAGGAGGAGGAGAA 59.275 52.381 0.00 0.00 0.00 2.87
4358 5590 1.289530 GAGAAAGGGAGGAGGAGGAGA 59.710 57.143 0.00 0.00 0.00 3.71
4359 5591 1.290732 AGAGAAAGGGAGGAGGAGGAG 59.709 57.143 0.00 0.00 0.00 3.69
4364 5596 3.989056 AGTTAGAGAGAAAGGGAGGAGG 58.011 50.000 0.00 0.00 0.00 4.30
4387 5619 6.074356 GCAGCAACTTACCAAACATAAAAGTG 60.074 38.462 0.00 0.00 31.09 3.16
4388 5620 5.983118 GCAGCAACTTACCAAACATAAAAGT 59.017 36.000 0.00 0.00 31.94 2.66
4389 5621 6.215845 AGCAGCAACTTACCAAACATAAAAG 58.784 36.000 0.00 0.00 0.00 2.27
4390 5622 6.155475 AGCAGCAACTTACCAAACATAAAA 57.845 33.333 0.00 0.00 0.00 1.52
4391 5623 5.782893 AGCAGCAACTTACCAAACATAAA 57.217 34.783 0.00 0.00 0.00 1.40
4392 5624 5.182380 GGTAGCAGCAACTTACCAAACATAA 59.818 40.000 4.10 0.00 0.00 1.90
4393 5625 4.698304 GGTAGCAGCAACTTACCAAACATA 59.302 41.667 4.10 0.00 0.00 2.29
4421 5653 4.123497 ACAAAAGAAAGAACCAACAGCC 57.877 40.909 0.00 0.00 0.00 4.85
4435 5667 8.648698 TTCTAATCCATGATTCCAACAAAAGA 57.351 30.769 0.00 0.00 33.95 2.52
4489 5721 2.941891 TTCGTTGAGCTGCTAAAACG 57.058 45.000 29.57 29.57 45.02 3.60
4505 5737 9.445878 TCTACTACCTCTGTACCATAATATTCG 57.554 37.037 0.00 0.00 0.00 3.34
4513 5745 9.303116 CATTATCTTCTACTACCTCTGTACCAT 57.697 37.037 0.00 0.00 0.00 3.55
4514 5746 7.724506 CCATTATCTTCTACTACCTCTGTACCA 59.275 40.741 0.00 0.00 0.00 3.25
4515 5747 7.943447 TCCATTATCTTCTACTACCTCTGTACC 59.057 40.741 0.00 0.00 0.00 3.34
4516 5748 8.785946 GTCCATTATCTTCTACTACCTCTGTAC 58.214 40.741 0.00 0.00 0.00 2.90
4517 5749 8.725256 AGTCCATTATCTTCTACTACCTCTGTA 58.275 37.037 0.00 0.00 0.00 2.74
4518 5750 7.504238 CAGTCCATTATCTTCTACTACCTCTGT 59.496 40.741 0.00 0.00 0.00 3.41
4519 5751 7.523052 GCAGTCCATTATCTTCTACTACCTCTG 60.523 44.444 0.00 0.00 0.00 3.35
4520 5752 6.492087 GCAGTCCATTATCTTCTACTACCTCT 59.508 42.308 0.00 0.00 0.00 3.69
4521 5753 6.265649 TGCAGTCCATTATCTTCTACTACCTC 59.734 42.308 0.00 0.00 0.00 3.85
4522 5754 6.136857 TGCAGTCCATTATCTTCTACTACCT 58.863 40.000 0.00 0.00 0.00 3.08
4523 5755 6.406692 TGCAGTCCATTATCTTCTACTACC 57.593 41.667 0.00 0.00 0.00 3.18
4524 5756 7.928706 ACATTGCAGTCCATTATCTTCTACTAC 59.071 37.037 0.00 0.00 0.00 2.73
4525 5757 8.023021 ACATTGCAGTCCATTATCTTCTACTA 57.977 34.615 0.00 0.00 0.00 1.82
4526 5758 6.893583 ACATTGCAGTCCATTATCTTCTACT 58.106 36.000 0.00 0.00 0.00 2.57
4527 5759 6.989169 AGACATTGCAGTCCATTATCTTCTAC 59.011 38.462 2.65 0.00 39.34 2.59
4528 5760 7.129457 AGACATTGCAGTCCATTATCTTCTA 57.871 36.000 2.65 0.00 39.34 2.10
4529 5761 5.999044 AGACATTGCAGTCCATTATCTTCT 58.001 37.500 2.65 0.00 39.34 2.85
4530 5762 7.792374 TTAGACATTGCAGTCCATTATCTTC 57.208 36.000 2.65 0.00 39.34 2.87
4531 5763 8.627403 CATTTAGACATTGCAGTCCATTATCTT 58.373 33.333 2.65 0.00 39.34 2.40
4550 5782 8.570488 CATCAAGCCATTTAGCATACATTTAGA 58.430 33.333 0.00 0.00 34.23 2.10
4601 5833 7.278424 CGGGGATACGTTTGACTATTCTTTTAA 59.722 37.037 0.00 0.00 37.60 1.52
4602 5834 6.757947 CGGGGATACGTTTGACTATTCTTTTA 59.242 38.462 0.00 0.00 37.60 1.52
4603 5835 5.583457 CGGGGATACGTTTGACTATTCTTTT 59.417 40.000 0.00 0.00 37.60 2.27
4604 5836 5.114081 CGGGGATACGTTTGACTATTCTTT 58.886 41.667 0.00 0.00 37.60 2.52
4605 5837 4.161001 ACGGGGATACGTTTGACTATTCTT 59.839 41.667 0.00 0.00 46.25 2.52
4607 5839 4.050852 ACGGGGATACGTTTGACTATTC 57.949 45.455 0.00 0.00 46.25 1.75
4630 5864 2.604373 CGTCATTTCTGAAAAGCGCCAA 60.604 45.455 2.29 0.00 31.85 4.52
4650 5884 6.804783 TGCACCGATACTGATATGTAAATACG 59.195 38.462 0.00 0.00 0.00 3.06
4653 5887 8.097038 AGATTGCACCGATACTGATATGTAAAT 58.903 33.333 0.00 0.00 0.00 1.40
4654 5888 7.441836 AGATTGCACCGATACTGATATGTAAA 58.558 34.615 0.00 0.00 0.00 2.01
4656 5890 6.590234 AGATTGCACCGATACTGATATGTA 57.410 37.500 0.00 0.00 0.00 2.29
4657 5891 5.474578 AGATTGCACCGATACTGATATGT 57.525 39.130 0.00 0.00 0.00 2.29
4658 5892 6.749578 GTCTAGATTGCACCGATACTGATATG 59.250 42.308 0.00 0.00 0.00 1.78
4659 5893 6.661377 AGTCTAGATTGCACCGATACTGATAT 59.339 38.462 0.00 0.00 0.00 1.63
4664 5930 6.004574 TCATAGTCTAGATTGCACCGATACT 58.995 40.000 0.00 0.00 0.00 2.12
4671 5937 7.009999 CAGTTTCAGTCATAGTCTAGATTGCAC 59.990 40.741 0.00 0.00 0.00 4.57
4695 5961 1.202879 TGTTCCTAGCAAACCACCCAG 60.203 52.381 4.38 0.00 0.00 4.45
4701 6589 5.353400 GGTAGTAATGTGTTCCTAGCAAACC 59.647 44.000 4.38 0.00 0.00 3.27
4717 6605 7.131907 TGGTATATGTTGTGCAGGTAGTAAT 57.868 36.000 0.00 0.00 0.00 1.89
4719 6607 5.659525 ACTGGTATATGTTGTGCAGGTAGTA 59.340 40.000 0.00 0.00 0.00 1.82
4732 6620 5.560724 AGAAAGCAACACACTGGTATATGT 58.439 37.500 0.00 0.00 0.00 2.29
4741 6629 6.534634 AGAATACCTTAGAAAGCAACACACT 58.465 36.000 0.00 0.00 0.00 3.55
4770 6658 7.395772 TGCTTACAATTCCAACCTGATAAATGA 59.604 33.333 0.00 0.00 0.00 2.57
4816 6715 8.335532 TCTCTTTTCTTTTCTTGAAACACAGA 57.664 30.769 0.00 0.00 33.77 3.41
4973 6872 2.777832 ATCCAAACAGGCTGAGACTC 57.222 50.000 23.66 0.00 37.29 3.36
4981 6880 3.243839 TGCTTTCTGAAATCCAAACAGGC 60.244 43.478 2.88 1.25 37.29 4.85
5062 6964 2.159179 AGGTTTACCATCCAATGCCC 57.841 50.000 1.13 0.00 38.89 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.