Multiple sequence alignment - TraesCS6B01G456800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G456800 chr6B 100.000 7165 0 0 1 7165 712992217 712999381 0.000000e+00 13232.0
1 TraesCS6B01G456800 chr6B 90.222 2884 176 52 3145 5972 684414668 684417501 0.000000e+00 3666.0
2 TraesCS6B01G456800 chr6B 87.366 467 39 6 2511 2967 684413555 684414011 1.070000e-142 518.0
3 TraesCS6B01G456800 chr6B 84.615 104 10 3 6061 6164 684417519 684417616 1.640000e-16 99.0
4 TraesCS6B01G456800 chr6B 86.885 61 7 1 3176 3236 43286415 43286474 4.640000e-07 67.6
5 TraesCS6B01G456800 chr6D 93.806 3552 142 27 3046 6533 467774863 467778400 0.000000e+00 5269.0
6 TraesCS6B01G456800 chr6D 88.784 954 70 19 3046 3974 450651956 450652897 0.000000e+00 1134.0
7 TraesCS6B01G456800 chr6D 89.753 810 54 12 687 1475 467771935 467772736 0.000000e+00 1009.0
8 TraesCS6B01G456800 chr6D 95.432 613 26 2 6551 7162 467778695 467779306 0.000000e+00 976.0
9 TraesCS6B01G456800 chr6D 85.528 767 52 25 2113 2838 467773599 467774347 0.000000e+00 747.0
10 TraesCS6B01G456800 chr6D 88.226 637 29 11 3974 4608 450653045 450653637 0.000000e+00 719.0
11 TraesCS6B01G456800 chr6D 85.231 650 55 17 1477 2105 467772773 467773402 1.310000e-176 630.0
12 TraesCS6B01G456800 chr6D 88.034 468 35 7 2511 2967 450651229 450651686 1.060000e-147 534.0
13 TraesCS6B01G456800 chr6D 92.357 157 10 2 501 656 467771806 467771961 9.360000e-54 222.0
14 TraesCS6B01G456800 chr6D 81.356 118 17 5 3705 3819 99554846 99554961 2.750000e-14 91.6
15 TraesCS6B01G456800 chr6A 92.640 3451 171 46 3046 6433 613835644 613839074 0.000000e+00 4889.0
16 TraesCS6B01G456800 chr6A 87.511 2194 133 60 3046 5181 596172667 596174777 0.000000e+00 2403.0
17 TraesCS6B01G456800 chr6A 88.219 1112 61 28 857 1920 613833240 613834329 0.000000e+00 1264.0
18 TraesCS6B01G456800 chr6A 88.183 897 69 21 5284 6164 596174774 596175649 0.000000e+00 1035.0
19 TraesCS6B01G456800 chr6A 83.166 796 72 25 2106 2878 613834400 613835156 0.000000e+00 671.0
20 TraesCS6B01G456800 chr6A 88.651 467 33 6 2511 2967 596171960 596172416 1.050000e-152 551.0
21 TraesCS6B01G456800 chr6A 85.217 115 14 3 3454 3565 119606374 119606488 1.630000e-21 115.0
22 TraesCS6B01G456800 chr6A 93.750 64 3 1 3172 3235 24858522 24858584 2.130000e-15 95.3
23 TraesCS6B01G456800 chr3B 96.607 501 17 0 1 501 700342249 700341749 0.000000e+00 832.0
24 TraesCS6B01G456800 chr3B 91.716 507 36 1 1 501 806088169 806087663 0.000000e+00 699.0
25 TraesCS6B01G456800 chr7B 96.371 496 17 1 6 501 196004866 196004372 0.000000e+00 815.0
26 TraesCS6B01G456800 chr7B 85.714 105 12 3 3464 3565 749413935 749414039 2.730000e-19 108.0
27 TraesCS6B01G456800 chr3D 92.986 499 35 0 1 499 564492432 564492930 0.000000e+00 728.0
28 TraesCS6B01G456800 chr3D 88.462 52 6 0 501 552 126366341 126366290 6.000000e-06 63.9
29 TraesCS6B01G456800 chr2D 93.014 501 32 2 1 501 595425893 595426390 0.000000e+00 728.0
30 TraesCS6B01G456800 chr2D 95.455 44 2 0 501 544 112595700 112595743 3.590000e-08 71.3
31 TraesCS6B01G456800 chrUn 77.996 509 100 11 1 501 322527112 322526608 6.980000e-80 309.0
32 TraesCS6B01G456800 chrUn 77.996 509 100 11 1 501 322535165 322535669 6.980000e-80 309.0
33 TraesCS6B01G456800 chr7D 78.175 504 86 18 9 498 541248265 541248758 4.200000e-77 300.0
34 TraesCS6B01G456800 chr7D 76.353 351 70 12 6667 7012 605588376 605588718 7.390000e-40 176.0
35 TraesCS6B01G456800 chr7D 75.783 351 72 12 6667 7012 605632330 605632672 1.600000e-36 165.0
36 TraesCS6B01G456800 chr7D 75.783 351 72 12 6667 7012 605635969 605636311 1.600000e-36 165.0
37 TraesCS6B01G456800 chr7D 75.783 351 72 12 6667 7012 605638133 605638475 1.600000e-36 165.0
38 TraesCS6B01G456800 chr7D 84.874 119 16 2 3462 3579 633378527 633378644 1.260000e-22 119.0
39 TraesCS6B01G456800 chr7D 100.000 38 0 0 500 537 138759227 138759190 3.590000e-08 71.3
40 TraesCS6B01G456800 chr5B 77.470 506 98 16 11 504 611693903 611694404 9.090000e-74 289.0
41 TraesCS6B01G456800 chr5B 76.444 225 46 6 6578 6800 698020163 698019944 1.630000e-21 115.0
42 TraesCS6B01G456800 chr5B 93.333 45 1 2 501 545 464891432 464891390 1.670000e-06 65.8
43 TraesCS6B01G456800 chr5D 75.983 483 82 22 6664 7138 46129989 46130445 1.210000e-52 219.0
44 TraesCS6B01G456800 chr5D 93.333 45 1 2 501 545 386862902 386862860 1.670000e-06 65.8
45 TraesCS6B01G456800 chr2A 76.773 409 72 16 6679 7085 655056401 655056788 2.620000e-49 207.0
46 TraesCS6B01G456800 chr2A 75.000 144 30 6 2734 2875 25020857 25020996 2.160000e-05 62.1
47 TraesCS6B01G456800 chr4A 73.373 507 122 13 6664 7165 734989236 734988738 7.390000e-40 176.0
48 TraesCS6B01G456800 chr2B 72.148 596 142 21 6578 7163 625420810 625421391 7.440000e-35 159.0
49 TraesCS6B01G456800 chr7A 85.217 115 16 1 3465 3579 733793640 733793527 4.540000e-22 117.0
50 TraesCS6B01G456800 chr4D 73.462 260 61 7 6684 6941 293349984 293350237 2.750000e-14 91.6
51 TraesCS6B01G456800 chr4D 100.000 38 0 0 501 538 494101647 494101684 3.590000e-08 71.3
52 TraesCS6B01G456800 chr4B 93.617 47 3 0 501 547 154242162 154242116 3.590000e-08 71.3
53 TraesCS6B01G456800 chr5A 93.478 46 2 1 501 545 488630534 488630489 4.640000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G456800 chr6B 712992217 712999381 7164 False 13232.000000 13232 100.000000 1 7165 1 chr6B.!!$F2 7164
1 TraesCS6B01G456800 chr6B 684413555 684417616 4061 False 1427.666667 3666 87.401000 2511 6164 3 chr6B.!!$F3 3653
2 TraesCS6B01G456800 chr6D 467771806 467779306 7500 False 1475.500000 5269 90.351167 501 7162 6 chr6D.!!$F3 6661
3 TraesCS6B01G456800 chr6D 450651229 450653637 2408 False 795.666667 1134 88.348000 2511 4608 3 chr6D.!!$F2 2097
4 TraesCS6B01G456800 chr6A 613833240 613839074 5834 False 2274.666667 4889 88.008333 857 6433 3 chr6A.!!$F4 5576
5 TraesCS6B01G456800 chr6A 596171960 596175649 3689 False 1329.666667 2403 88.115000 2511 6164 3 chr6A.!!$F3 3653
6 TraesCS6B01G456800 chr3B 700341749 700342249 500 True 832.000000 832 96.607000 1 501 1 chr3B.!!$R1 500
7 TraesCS6B01G456800 chr3B 806087663 806088169 506 True 699.000000 699 91.716000 1 501 1 chr3B.!!$R2 500
8 TraesCS6B01G456800 chrUn 322526608 322527112 504 True 309.000000 309 77.996000 1 501 1 chrUn.!!$R1 500
9 TraesCS6B01G456800 chrUn 322535165 322535669 504 False 309.000000 309 77.996000 1 501 1 chrUn.!!$F1 500
10 TraesCS6B01G456800 chr5B 611693903 611694404 501 False 289.000000 289 77.470000 11 504 1 chr5B.!!$F1 493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 860 0.033109 TCAGAGAGGATCCGCTGGAA 60.033 55.000 23.95 4.49 38.23 3.53 F
1478 1525 0.038744 CTGCCCTTCAGTGGACCAAT 59.961 55.000 0.00 0.00 38.02 3.16 F
1940 2025 0.384725 CTTTTGCGCTTCACCGTCTG 60.385 55.000 9.73 0.00 0.00 3.51 F
2473 2813 0.601576 GCACACACGTGTACCCATGA 60.602 55.000 22.90 0.00 45.50 3.07 F
3039 3719 0.677731 AATGTCGAGCACACATGGGG 60.678 55.000 0.00 0.00 38.04 4.96 F
3045 3725 1.670811 CGAGCACACATGGGGTTTATC 59.329 52.381 0.00 0.00 0.00 1.75 F
3046 3726 2.024414 GAGCACACATGGGGTTTATCC 58.976 52.381 0.00 0.00 0.00 2.59 F
5011 6210 2.090775 GGAAGAGGAGGAGGAGGAAGAT 60.091 54.545 0.00 0.00 0.00 2.40 F
5428 6629 0.609131 AAATCGCACCTGGAACCCTG 60.609 55.000 0.00 0.00 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 1843 0.305922 CCGCGATCTTCATCCTTTGC 59.694 55.000 8.23 0.00 0.00 3.68 R
2976 3656 0.178873 AGTCTGTCCCTTGGCCCTTA 60.179 55.000 0.00 0.00 0.00 2.69 R
3024 3704 0.687920 TAAACCCCATGTGTGCTCGA 59.312 50.000 0.00 0.00 0.00 4.04 R
4374 5549 2.806945 TACCTGGCTTCATTTCCCTG 57.193 50.000 0.00 0.00 0.00 4.45 R
5011 6210 1.933051 TCCTCCTCTTCCTCCTCATCA 59.067 52.381 0.00 0.00 0.00 3.07 R
5106 6305 9.771534 AGAACCTAAGCTAGTCATCAAATAATC 57.228 33.333 0.00 0.00 0.00 1.75 R
5139 6338 7.821846 AGAAGAGATGTCAAAACATAGTTCCTC 59.178 37.037 0.00 0.00 46.20 3.71 R
6051 7270 0.179124 AGATTCAGCTCGACGGAAGC 60.179 55.000 0.47 0.47 38.89 3.86 R
6478 7718 0.323178 AAGCATCTGTTCCCCAGCAG 60.323 55.000 0.00 0.00 41.25 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.481128 ACGAACCTGTTTTCCCCCAT 59.519 50.000 0.00 0.00 0.00 4.00
198 205 3.398318 TCATCCACTACCAGCTTCCTA 57.602 47.619 0.00 0.00 0.00 2.94
207 214 5.033522 ACTACCAGCTTCCTATTCTCCTTT 58.966 41.667 0.00 0.00 0.00 3.11
338 351 4.722700 CCAGGGTGGGAAGGTGCG 62.723 72.222 0.00 0.00 32.67 5.34
366 380 0.039035 CCCCTTGATCACCCCGAAAA 59.961 55.000 0.00 0.00 0.00 2.29
372 386 0.953960 GATCACCCCGAAAACAGCGT 60.954 55.000 0.00 0.00 0.00 5.07
423 438 4.570663 CCGACCGCGTCCAGGATC 62.571 72.222 4.92 0.00 35.23 3.36
556 573 5.369833 TGTTCCCAAGTTCTTGAATTACGA 58.630 37.500 13.29 0.00 0.00 3.43
588 605 3.119531 TGTGCTTCGAAAATATTGCCAGG 60.120 43.478 0.00 0.00 0.00 4.45
594 611 6.978080 GCTTCGAAAATATTGCCAGGATTTTA 59.022 34.615 0.00 0.00 33.91 1.52
606 623 6.872920 TGCCAGGATTTTAATAAATGTCCAC 58.127 36.000 15.44 8.33 34.16 4.02
620 637 3.347958 TGTCCACGCATTTTGAAGAAC 57.652 42.857 0.00 0.00 0.00 3.01
629 646 4.151689 CGCATTTTGAAGAACGTTCCTCTA 59.848 41.667 24.22 15.12 0.00 2.43
630 647 5.163854 CGCATTTTGAAGAACGTTCCTCTAT 60.164 40.000 24.22 12.69 0.00 1.98
631 648 6.612306 GCATTTTGAAGAACGTTCCTCTATT 58.388 36.000 24.22 11.82 0.00 1.73
632 649 7.084486 GCATTTTGAAGAACGTTCCTCTATTT 58.916 34.615 24.22 11.08 0.00 1.40
633 650 7.271438 GCATTTTGAAGAACGTTCCTCTATTTC 59.729 37.037 24.22 18.94 0.00 2.17
634 651 7.795482 TTTTGAAGAACGTTCCTCTATTTCA 57.205 32.000 24.22 21.06 0.00 2.69
635 652 7.795482 TTTGAAGAACGTTCCTCTATTTCAA 57.205 32.000 25.14 25.14 33.11 2.69
636 653 7.795482 TTGAAGAACGTTCCTCTATTTCAAA 57.205 32.000 26.03 16.00 32.32 2.69
637 654 7.795482 TGAAGAACGTTCCTCTATTTCAAAA 57.205 32.000 24.22 2.96 0.00 2.44
638 655 7.861630 TGAAGAACGTTCCTCTATTTCAAAAG 58.138 34.615 24.22 0.00 0.00 2.27
639 656 7.713507 TGAAGAACGTTCCTCTATTTCAAAAGA 59.286 33.333 24.22 2.30 0.00 2.52
640 657 8.622948 AAGAACGTTCCTCTATTTCAAAAGAT 57.377 30.769 24.22 0.00 0.00 2.40
641 658 8.034058 AGAACGTTCCTCTATTTCAAAAGATG 57.966 34.615 24.22 0.00 0.00 2.90
642 659 7.661847 AGAACGTTCCTCTATTTCAAAAGATGT 59.338 33.333 24.22 0.00 0.00 3.06
643 660 7.745620 ACGTTCCTCTATTTCAAAAGATGTT 57.254 32.000 0.00 0.00 0.00 2.71
644 661 7.807680 ACGTTCCTCTATTTCAAAAGATGTTC 58.192 34.615 0.00 0.00 0.00 3.18
645 662 7.444183 ACGTTCCTCTATTTCAAAAGATGTTCA 59.556 33.333 0.00 0.00 0.00 3.18
646 663 7.746475 CGTTCCTCTATTTCAAAAGATGTTCAC 59.254 37.037 0.00 0.00 0.00 3.18
647 664 7.364522 TCCTCTATTTCAAAAGATGTTCACG 57.635 36.000 0.00 0.00 0.00 4.35
648 665 7.158697 TCCTCTATTTCAAAAGATGTTCACGA 58.841 34.615 0.00 0.00 0.00 4.35
649 666 7.659799 TCCTCTATTTCAAAAGATGTTCACGAA 59.340 33.333 0.00 0.00 0.00 3.85
650 667 8.454106 CCTCTATTTCAAAAGATGTTCACGAAT 58.546 33.333 0.00 0.00 0.00 3.34
651 668 9.831737 CTCTATTTCAAAAGATGTTCACGAATT 57.168 29.630 0.00 0.00 0.00 2.17
663 680 9.757227 AGATGTTCACGAATTTAAAATTTTCCA 57.243 25.926 6.72 0.00 0.00 3.53
666 683 9.534565 TGTTCACGAATTTAAAATTTTCCATGA 57.465 25.926 6.72 1.02 0.00 3.07
710 727 6.088016 TCTCAAAAGATGTCCCACAAATTG 57.912 37.500 0.00 0.00 0.00 2.32
774 791 3.277142 AAATGGTATTCCTCGACCCAC 57.723 47.619 0.00 0.00 34.58 4.61
778 795 1.829222 GGTATTCCTCGACCCACTGAA 59.171 52.381 0.00 0.00 0.00 3.02
779 796 2.418334 GGTATTCCTCGACCCACTGAAC 60.418 54.545 0.00 0.00 0.00 3.18
794 811 3.236618 GAACACCAGGTGCGCGTTC 62.237 63.158 20.48 11.85 36.98 3.95
796 813 3.414700 CACCAGGTGCGCGTTCTC 61.415 66.667 6.67 0.00 0.00 2.87
841 858 0.602562 GATCAGAGAGGATCCGCTGG 59.397 60.000 23.95 14.41 38.23 4.85
842 859 0.187117 ATCAGAGAGGATCCGCTGGA 59.813 55.000 23.95 19.08 38.23 3.86
843 860 0.033109 TCAGAGAGGATCCGCTGGAA 60.033 55.000 23.95 4.49 38.23 3.53
879 897 3.691342 TGTCGGCGGAGAACTGGG 61.691 66.667 7.21 0.00 0.00 4.45
887 905 1.032114 CGGAGAACTGGGCCAAATCC 61.032 60.000 8.04 11.48 0.00 3.01
903 921 0.040204 ATCCTTTGGGCCTCAACAGG 59.960 55.000 4.53 13.76 43.82 4.00
923 941 1.599047 CAGCAGACCGACCCAGAAT 59.401 57.895 0.00 0.00 0.00 2.40
955 973 0.613777 CTTTACTTGACCCCGGAGCT 59.386 55.000 0.73 0.00 0.00 4.09
959 977 2.683933 TTGACCCCGGAGCTCTCC 60.684 66.667 14.64 5.85 46.18 3.71
1218 1265 3.164026 GGTACGTGGATGGGTTTCC 57.836 57.895 0.00 0.00 36.24 3.13
1253 1300 4.056125 CGGCCTCTGTGACGCTGA 62.056 66.667 0.00 0.00 0.00 4.26
1254 1301 2.433318 GGCCTCTGTGACGCTGAC 60.433 66.667 0.00 0.00 0.00 3.51
1256 1303 2.807045 CCTCTGTGACGCTGACGC 60.807 66.667 0.00 0.00 45.53 5.19
1257 1304 2.256764 CTCTGTGACGCTGACGCT 59.743 61.111 0.00 0.00 45.53 5.07
1258 1305 2.050077 TCTGTGACGCTGACGCTG 60.050 61.111 0.00 0.00 45.53 5.18
1263 1310 3.414700 GACGCTGACGCTGGGTTG 61.415 66.667 0.00 0.00 45.53 3.77
1270 1317 1.527380 GACGCTGGGTTGGTTTGGA 60.527 57.895 0.00 0.00 0.00 3.53
1416 1463 1.168407 TACCGGAGCCCGTCGATTAG 61.168 60.000 9.46 0.00 46.80 1.73
1419 1466 1.143183 GGAGCCCGTCGATTAGCAA 59.857 57.895 0.00 0.00 0.00 3.91
1420 1467 0.461339 GGAGCCCGTCGATTAGCAAA 60.461 55.000 0.00 0.00 0.00 3.68
1463 1510 3.815809 TCTCTCTCTAGTTCTAGCTGCC 58.184 50.000 0.00 0.00 0.00 4.85
1466 1513 3.053245 TCTCTCTAGTTCTAGCTGCCCTT 60.053 47.826 0.00 0.00 0.00 3.95
1468 1515 3.027412 CTCTAGTTCTAGCTGCCCTTCA 58.973 50.000 0.00 0.00 0.00 3.02
1475 1522 1.553690 TAGCTGCCCTTCAGTGGACC 61.554 60.000 0.00 0.00 44.66 4.46
1477 1524 1.455849 CTGCCCTTCAGTGGACCAA 59.544 57.895 0.00 0.00 38.02 3.67
1478 1525 0.038744 CTGCCCTTCAGTGGACCAAT 59.961 55.000 0.00 0.00 38.02 3.16
1482 1529 1.203050 CCCTTCAGTGGACCAATGGTT 60.203 52.381 21.14 0.00 35.25 3.67
1484 1531 2.297033 CCTTCAGTGGACCAATGGTTTG 59.703 50.000 21.14 9.15 35.25 2.93
1485 1532 3.221771 CTTCAGTGGACCAATGGTTTGA 58.778 45.455 21.14 6.10 35.25 2.69
1486 1533 2.582052 TCAGTGGACCAATGGTTTGAC 58.418 47.619 21.14 3.84 35.25 3.18
1638 1719 6.183360 CCAACAAGAAGAAAAAGGTTTGCTTC 60.183 38.462 11.90 11.90 34.50 3.86
1639 1720 6.286240 ACAAGAAGAAAAAGGTTTGCTTCT 57.714 33.333 15.40 15.40 39.84 2.85
1640 1721 7.404671 ACAAGAAGAAAAAGGTTTGCTTCTA 57.595 32.000 19.63 0.00 38.66 2.10
1648 1730 7.390162 AGAAAAAGGTTTGCTTCTATCTCTCTG 59.610 37.037 0.00 0.00 0.00 3.35
1654 1736 4.710423 TGCTTCTATCTCTCTGTGTGTC 57.290 45.455 0.00 0.00 0.00 3.67
1679 1761 4.406456 TGCCTGATTGTTGAATTACCTGT 58.594 39.130 0.00 0.00 0.00 4.00
1681 1763 5.048083 TGCCTGATTGTTGAATTACCTGTTC 60.048 40.000 0.00 0.00 0.00 3.18
1687 1769 9.959749 TGATTGTTGAATTACCTGTTCTTTTAC 57.040 29.630 0.00 0.00 0.00 2.01
1689 1771 7.789273 TGTTGAATTACCTGTTCTTTTACGA 57.211 32.000 0.00 0.00 0.00 3.43
1721 1803 2.288948 TGGTTTCGTAGAAGGCGCTAAA 60.289 45.455 7.64 0.00 45.90 1.85
1727 1809 3.123804 CGTAGAAGGCGCTAAACATGAT 58.876 45.455 7.64 0.00 0.00 2.45
1729 1811 4.550831 CGTAGAAGGCGCTAAACATGATTG 60.551 45.833 7.64 0.00 0.00 2.67
1748 1830 3.393089 TGTTGCTGTTTTGGTTTGTGT 57.607 38.095 0.00 0.00 0.00 3.72
1761 1843 3.380004 TGGTTTGTGTTTTGTAGCTGGAG 59.620 43.478 0.00 0.00 0.00 3.86
1776 1858 2.617774 GCTGGAGCAAAGGATGAAGATC 59.382 50.000 0.00 0.00 41.59 2.75
1872 1957 1.699634 AGGTGTGCTGGTAGTGTGATT 59.300 47.619 0.00 0.00 0.00 2.57
1877 1962 1.073763 TGCTGGTAGTGTGATTTGCCT 59.926 47.619 0.00 0.00 0.00 4.75
1878 1963 1.470098 GCTGGTAGTGTGATTTGCCTG 59.530 52.381 0.00 0.00 0.00 4.85
1879 1964 1.470098 CTGGTAGTGTGATTTGCCTGC 59.530 52.381 0.00 0.00 0.00 4.85
1880 1965 1.202867 TGGTAGTGTGATTTGCCTGCA 60.203 47.619 0.00 0.00 0.00 4.41
1906 1991 4.822036 TTACTTTGAACGGATGTGTTGG 57.178 40.909 0.00 0.00 30.75 3.77
1928 2013 2.348872 CGCAGCATCCTATACTTTTGCG 60.349 50.000 1.08 1.08 45.39 4.85
1932 2017 3.561725 AGCATCCTATACTTTTGCGCTTC 59.438 43.478 9.73 0.00 38.32 3.86
1933 2018 3.312421 GCATCCTATACTTTTGCGCTTCA 59.688 43.478 9.73 0.00 0.00 3.02
1939 2024 0.814010 ACTTTTGCGCTTCACCGTCT 60.814 50.000 9.73 0.00 0.00 4.18
1940 2025 0.384725 CTTTTGCGCTTCACCGTCTG 60.385 55.000 9.73 0.00 0.00 3.51
1941 2026 1.781025 TTTTGCGCTTCACCGTCTGG 61.781 55.000 9.73 0.00 42.84 3.86
1962 2064 2.682352 GTGTTTTGCATTGCCAAAGGTT 59.318 40.909 8.04 0.00 36.21 3.50
1973 2075 1.404583 GCCAAAGGTTGCCAATGCTAG 60.405 52.381 0.00 0.00 38.71 3.42
1977 2079 1.538047 AGGTTGCCAATGCTAGTGTG 58.462 50.000 0.00 0.00 38.71 3.82
2009 2111 6.118170 CACCACCAATGATCTCTAGTTGATT 58.882 40.000 0.00 0.00 0.00 2.57
2026 2128 9.294030 CTAGTTGATTTAACTCAAATTGCATCC 57.706 33.333 12.75 0.00 46.55 3.51
2027 2129 7.669427 AGTTGATTTAACTCAAATTGCATCCA 58.331 30.769 9.57 0.00 46.55 3.41
2030 2132 5.404466 TTTAACTCAAATTGCATCCAGGG 57.596 39.130 0.00 0.00 0.00 4.45
2036 2138 3.839490 TCAAATTGCATCCAGGGATTTGT 59.161 39.130 14.28 0.00 38.31 2.83
2058 2162 8.775220 TTGTTTAAAGTCATGTAATTGTCGTG 57.225 30.769 0.00 0.00 0.00 4.35
2070 2174 1.506309 TTGTCGTGTGGTCATGCAGC 61.506 55.000 0.00 0.00 0.00 5.25
2071 2175 1.960763 GTCGTGTGGTCATGCAGCA 60.961 57.895 0.00 0.00 0.00 4.41
2107 2400 4.728534 TGCTTTGTAACAACACACTTCAC 58.271 39.130 0.00 0.00 0.00 3.18
2110 2403 5.554822 TTTGTAACAACACACTTCACCTC 57.445 39.130 0.00 0.00 0.00 3.85
2135 2428 8.774183 TCTAAAAGGTTATGTTAGGCTGGATTA 58.226 33.333 0.00 0.00 0.00 1.75
2145 2438 7.253905 TGTTAGGCTGGATTACTAGAAAACT 57.746 36.000 0.00 0.00 0.00 2.66
2162 2455 6.729187 AGAAAACTGTGCTAGCAACTTTTAG 58.271 36.000 21.29 12.86 0.00 1.85
2180 2475 7.945134 ACTTTTAGCATCACTTCTTGTTGATT 58.055 30.769 0.00 0.00 0.00 2.57
2216 2511 7.495901 TGCATTGGAGAATTTGTTTTAAGTCA 58.504 30.769 0.00 0.00 0.00 3.41
2217 2512 8.149647 TGCATTGGAGAATTTGTTTTAAGTCAT 58.850 29.630 0.00 0.00 0.00 3.06
2218 2513 8.437742 GCATTGGAGAATTTGTTTTAAGTCATG 58.562 33.333 0.00 0.00 0.00 3.07
2219 2514 9.480053 CATTGGAGAATTTGTTTTAAGTCATGT 57.520 29.630 0.00 0.00 0.00 3.21
2221 2516 9.959749 TTGGAGAATTTGTTTTAAGTCATGTAC 57.040 29.630 0.00 0.00 0.00 2.90
2222 2517 9.349713 TGGAGAATTTGTTTTAAGTCATGTACT 57.650 29.630 0.00 0.00 41.49 2.73
2240 2535 8.144478 TCATGTACTATTCTTATTCTGGTCTGC 58.856 37.037 0.00 0.00 0.00 4.26
2242 2537 8.079211 TGTACTATTCTTATTCTGGTCTGCTT 57.921 34.615 0.00 0.00 0.00 3.91
2262 2557 4.584688 GCAGTTTCCATTGGCTGC 57.415 55.556 15.21 15.21 45.70 5.25
2270 2565 0.607762 TCCATTGGCTGCGCAGTTTA 60.608 50.000 35.80 21.91 0.00 2.01
2277 2572 2.554462 TGGCTGCGCAGTTTATAACAAA 59.446 40.909 35.80 9.02 0.00 2.83
2373 2712 1.204146 TCTTAGGCTGGGTTGCTAGG 58.796 55.000 0.00 0.00 0.00 3.02
2389 2728 2.167075 GCTAGGAAAATGTGCCAGCAAT 59.833 45.455 0.00 0.00 32.34 3.56
2420 2759 8.877195 ACCTTTCACAGTTCTAAGGTTAAGATA 58.123 33.333 0.00 0.00 46.11 1.98
2421 2760 9.892130 CCTTTCACAGTTCTAAGGTTAAGATAT 57.108 33.333 0.00 0.00 33.93 1.63
2446 2785 7.787725 AGTATTTCTCTTATTAAAGGGCACG 57.212 36.000 0.00 0.00 32.76 5.34
2447 2786 7.562135 AGTATTTCTCTTATTAAAGGGCACGA 58.438 34.615 0.00 0.00 32.76 4.35
2448 2787 6.679327 ATTTCTCTTATTAAAGGGCACGAC 57.321 37.500 0.00 0.00 32.76 4.34
2449 2788 4.811969 TCTCTTATTAAAGGGCACGACA 57.188 40.909 0.00 0.00 32.76 4.35
2450 2789 4.501071 TCTCTTATTAAAGGGCACGACAC 58.499 43.478 0.00 0.00 32.76 3.67
2473 2813 0.601576 GCACACACGTGTACCCATGA 60.602 55.000 22.90 0.00 45.50 3.07
2488 2828 2.419990 CCCATGAAGCTTGTATCGGTGA 60.420 50.000 2.10 0.00 0.00 4.02
2528 2881 9.248291 CTAAACTATTTGTTGTGTGCAATCTTT 57.752 29.630 0.00 0.00 39.13 2.52
2529 2882 8.491331 AAACTATTTGTTGTGTGCAATCTTTT 57.509 26.923 0.00 0.00 39.13 2.27
2530 2883 8.491331 AACTATTTGTTGTGTGCAATCTTTTT 57.509 26.923 0.00 0.00 37.52 1.94
2587 2942 7.611467 TGTTTATGGATTAGCTTCAACTGATGT 59.389 33.333 0.00 0.00 0.00 3.06
2616 2971 1.303643 CTCCTGCCAGGTTTGGGAC 60.304 63.158 11.27 0.00 45.16 4.46
2738 3094 7.467267 GCAGGTTTGTAATACATGTACCATGAG 60.467 40.741 7.96 0.00 31.13 2.90
2739 3095 7.552687 CAGGTTTGTAATACATGTACCATGAGT 59.447 37.037 7.96 0.00 31.13 3.41
2740 3096 8.764558 AGGTTTGTAATACATGTACCATGAGTA 58.235 33.333 7.96 0.00 31.13 2.59
2741 3097 9.386010 GGTTTGTAATACATGTACCATGAGTAA 57.614 33.333 7.96 0.00 31.05 2.24
2745 3101 9.981114 TGTAATACATGTACCATGAGTAATGAG 57.019 33.333 7.96 0.00 38.72 2.90
2756 3112 8.723942 ACCATGAGTAATGAGTAATCTTGTTC 57.276 34.615 0.00 0.00 38.72 3.18
2787 3143 5.339008 TTCGTAATGAGTACTTGGATGCT 57.661 39.130 0.00 0.00 0.00 3.79
2800 3156 3.834489 TGGATGCTCCTCTGAGAAATC 57.166 47.619 6.17 3.70 41.42 2.17
2814 3170 6.005823 TCTGAGAAATCAACCACACAATCAT 58.994 36.000 0.00 0.00 0.00 2.45
2817 3173 8.352137 TGAGAAATCAACCACACAATCATAAT 57.648 30.769 0.00 0.00 0.00 1.28
2818 3174 8.805175 TGAGAAATCAACCACACAATCATAATT 58.195 29.630 0.00 0.00 0.00 1.40
2865 3222 1.814394 GCAGATGCAAACAGACCATCA 59.186 47.619 0.00 0.00 41.59 3.07
2866 3223 2.159421 GCAGATGCAAACAGACCATCAG 60.159 50.000 0.00 0.00 41.59 2.90
2874 3231 4.978580 GCAAACAGACCATCAGTTTTCTTC 59.021 41.667 0.00 0.00 34.52 2.87
2918 3284 7.921041 TCTCCCTCAGTTAATATCTGTCATT 57.079 36.000 0.00 0.00 34.86 2.57
2919 3285 7.730084 TCTCCCTCAGTTAATATCTGTCATTG 58.270 38.462 0.00 0.00 34.86 2.82
2936 3302 2.222007 TTGAACAAACACTGCATGCC 57.778 45.000 16.68 0.00 0.00 4.40
2960 3326 8.082242 GCCTTCATGTATTGTTACAGAAGTTTT 58.918 33.333 15.77 0.00 41.49 2.43
2998 3678 0.919710 GGGCCAAGGGACAGACTAAT 59.080 55.000 4.39 0.00 27.52 1.73
3006 3686 3.658725 AGGGACAGACTAATATGCCAGT 58.341 45.455 0.00 0.00 0.00 4.00
3024 3704 3.338249 CAGTCCCGAATTCACTCAATGT 58.662 45.455 6.22 0.00 0.00 2.71
3034 3714 1.068434 TCACTCAATGTCGAGCACACA 59.932 47.619 0.00 0.00 38.04 3.72
3039 3719 0.677731 AATGTCGAGCACACATGGGG 60.678 55.000 0.00 0.00 38.04 4.96
3045 3725 1.670811 CGAGCACACATGGGGTTTATC 59.329 52.381 0.00 0.00 0.00 1.75
3046 3726 2.024414 GAGCACACATGGGGTTTATCC 58.976 52.381 0.00 0.00 0.00 2.59
3125 3847 2.108250 CCATGGGGTGGGTCTTATTAGG 59.892 54.545 2.85 0.00 44.79 2.69
3147 3869 3.116174 AGAGGGGAGGGAACATAAAGTC 58.884 50.000 0.00 0.00 0.00 3.01
3150 3872 2.419713 GGGGAGGGAACATAAAGTCGAC 60.420 54.545 7.70 7.70 0.00 4.20
3266 4272 7.386025 TGAGTGATAGTATGAATGCTAATGTGC 59.614 37.037 0.00 0.00 0.00 4.57
3279 4285 4.877823 TGCTAATGTGCTTGATCTAGTTGG 59.122 41.667 6.05 0.00 0.00 3.77
3289 4295 5.586243 GCTTGATCTAGTTGGTTCATGCTAA 59.414 40.000 6.05 0.00 36.73 3.09
3353 4359 3.195610 CCTTTGGTCCTCCTTTATTTGCC 59.804 47.826 0.00 0.00 34.23 4.52
3620 4633 4.080919 TGGACATTGTATCTCCCTTGTCAG 60.081 45.833 0.00 0.00 36.16 3.51
3635 4648 3.838244 TGTCAGCTTGGTAACTTCAGT 57.162 42.857 0.00 0.00 37.61 3.41
3873 4887 6.677187 GCACATAGAAGCACATGCCATATATG 60.677 42.308 15.11 15.11 43.38 1.78
3944 4958 2.243478 TGCCCCCTGATTATAGTTGCAA 59.757 45.455 0.00 0.00 0.00 4.08
3986 5151 5.461526 GTTTTCTCCTTATCTGTTTGCCAC 58.538 41.667 0.00 0.00 0.00 5.01
4081 5250 6.173339 ACGATGTGTTTCTTCCATATGTTCT 58.827 36.000 1.24 0.00 0.00 3.01
4225 5395 5.724370 TCATGGTGACCTTTACTATGAAGGA 59.276 40.000 2.11 0.00 45.25 3.36
4246 5416 7.334844 AGGAAAAGAGTTTGAGGTACTTTTG 57.665 36.000 0.00 0.00 41.55 2.44
4334 5509 4.192317 GTCTGTGTTCTCAAACCTGTCTT 58.808 43.478 0.00 0.00 34.28 3.01
4703 5900 6.001449 CCTCCTGTGGATGAGGTAATTTAA 57.999 41.667 0.00 0.00 42.67 1.52
4705 5902 7.062957 CCTCCTGTGGATGAGGTAATTTAAAT 58.937 38.462 0.00 0.00 42.67 1.40
4895 6092 5.818136 TGATCGGCTAATTTTCCTTGAAG 57.182 39.130 0.00 0.00 0.00 3.02
4925 6124 4.765339 TGCAGCTCTACTAGTTAACTGACA 59.235 41.667 18.56 0.00 0.00 3.58
4936 6135 5.362556 AGTTAACTGACATGTGTTGCATC 57.637 39.130 7.48 0.00 35.19 3.91
5011 6210 2.090775 GGAAGAGGAGGAGGAGGAAGAT 60.091 54.545 0.00 0.00 0.00 2.40
5139 6338 5.202004 TGACTAGCTTAGGTTCTTCCCTAG 58.798 45.833 0.00 0.00 38.32 3.02
5157 6356 5.783360 TCCCTAGAGGAACTATGTTTTGACA 59.217 40.000 0.00 0.00 43.78 3.58
5158 6357 6.443849 TCCCTAGAGGAACTATGTTTTGACAT 59.556 38.462 0.00 0.00 43.78 3.06
5307 6507 2.798976 TCAGTTTGTGGCATTTCAGC 57.201 45.000 0.00 0.00 0.00 4.26
5319 6519 3.514645 GCATTTCAGCCCAAGTATGTTG 58.485 45.455 0.00 0.00 0.00 3.33
5320 6520 3.056607 GCATTTCAGCCCAAGTATGTTGT 60.057 43.478 0.00 0.00 0.00 3.32
5321 6521 4.487948 CATTTCAGCCCAAGTATGTTGTG 58.512 43.478 0.00 0.00 0.00 3.33
5323 6523 1.702401 TCAGCCCAAGTATGTTGTGGA 59.298 47.619 0.00 0.00 34.05 4.02
5325 6525 0.811281 GCCCAAGTATGTTGTGGAGC 59.189 55.000 0.00 0.00 34.05 4.70
5326 6526 1.614317 GCCCAAGTATGTTGTGGAGCT 60.614 52.381 0.00 0.00 34.05 4.09
5350 6551 6.033341 TGCTTTAGTTTGGCTTATTATTGCG 58.967 36.000 0.00 0.00 0.00 4.85
5428 6629 0.609131 AAATCGCACCTGGAACCCTG 60.609 55.000 0.00 0.00 0.00 4.45
5582 6787 5.416639 TCCAATCATGTGGAGAACTCATTTG 59.583 40.000 0.95 0.00 42.97 2.32
5671 6876 4.582701 TTTACATTCCTTGCACCAAGTG 57.417 40.909 4.48 0.00 39.58 3.16
5690 6895 3.088532 GTGTGCACTTATTCCCATTCCA 58.911 45.455 19.41 0.00 0.00 3.53
5726 6931 3.811722 TTCATTGACACATCTTCGTGC 57.188 42.857 0.00 0.00 40.73 5.34
5732 6937 1.651138 GACACATCTTCGTGCTTCTCG 59.349 52.381 0.00 0.00 40.73 4.04
5821 7027 2.859032 GCTCGAGGTTATGGACGATGTC 60.859 54.545 15.58 0.00 34.41 3.06
5884 7090 0.764890 TTTGCCTGTCAGTAGCCACT 59.235 50.000 0.00 0.00 34.42 4.00
5910 7116 3.504520 TGAAACATTAACGCCTTCCCTTC 59.495 43.478 0.00 0.00 0.00 3.46
6041 7260 4.558226 TGTGTATCTGTTGAGCCAGAAT 57.442 40.909 0.00 0.00 44.21 2.40
6048 7267 7.994911 TGTATCTGTTGAGCCAGAATCAAATAT 59.005 33.333 0.00 0.00 44.21 1.28
6051 7270 6.541278 TCTGTTGAGCCAGAATCAAATATCAG 59.459 38.462 0.00 0.00 38.49 2.90
6055 7274 5.530171 TGAGCCAGAATCAAATATCAGCTTC 59.470 40.000 0.00 0.00 30.52 3.86
6057 7276 4.320057 GCCAGAATCAAATATCAGCTTCCG 60.320 45.833 0.00 0.00 0.00 4.30
6187 7406 1.263482 GCGCCGTTTTGTTACCGTTG 61.263 55.000 0.00 0.00 0.00 4.10
6241 7460 5.128827 CCATTTCTTCCTGTAGCCTGTACTA 59.871 44.000 0.00 0.00 0.00 1.82
6350 7585 7.227314 GTCCATGCATGAGAACAAGTTATGATA 59.773 37.037 28.31 0.00 0.00 2.15
6417 7652 4.751600 TGATGCTAAGTTTGCTATGATCGG 59.248 41.667 10.60 0.00 0.00 4.18
6434 7669 2.428491 TCGGCATACGTGGTGAATTTT 58.572 42.857 0.00 0.00 44.69 1.82
6437 7672 3.727673 CGGCATACGTGGTGAATTTTCTG 60.728 47.826 0.00 0.00 37.93 3.02
6507 7747 4.822350 GGGAACAGATGCTTTAGGGAATAC 59.178 45.833 0.00 0.00 0.00 1.89
6509 7749 6.122964 GGAACAGATGCTTTAGGGAATACTT 58.877 40.000 0.00 0.00 0.00 2.24
6514 7754 7.890655 ACAGATGCTTTAGGGAATACTTTTTCT 59.109 33.333 0.00 0.00 0.00 2.52
6533 7773 1.815003 CTGGACAAATCAGGGTCTTGC 59.185 52.381 0.00 0.00 34.49 4.01
6536 7776 1.815003 GACAAATCAGGGTCTTGCTGG 59.185 52.381 0.00 0.00 0.00 4.85
6538 7778 0.040204 AAATCAGGGTCTTGCTGGGG 59.960 55.000 0.00 0.00 0.00 4.96
6539 7779 0.846427 AATCAGGGTCTTGCTGGGGA 60.846 55.000 0.00 0.00 0.00 4.81
6541 7781 1.303643 CAGGGTCTTGCTGGGGAAC 60.304 63.158 0.00 0.00 0.00 3.62
6542 7782 1.774217 AGGGTCTTGCTGGGGAACA 60.774 57.895 0.00 0.00 0.00 3.18
6545 7785 1.005450 GGGTCTTGCTGGGGAACAATA 59.995 52.381 0.00 0.00 0.00 1.90
6546 7786 2.556559 GGGTCTTGCTGGGGAACAATAA 60.557 50.000 0.00 0.00 0.00 1.40
6548 7788 3.769300 GGTCTTGCTGGGGAACAATAATT 59.231 43.478 0.00 0.00 0.00 1.40
6591 8108 1.076044 CATCCATCCCCAACCACCC 60.076 63.158 0.00 0.00 0.00 4.61
6606 8123 1.396653 CACCCCCAATCATCTCTTGC 58.603 55.000 0.00 0.00 0.00 4.01
6649 8167 5.304686 TGTGTTTTGTATCCTCTGGACTT 57.695 39.130 0.00 0.00 32.98 3.01
6651 8169 5.163248 TGTGTTTTGTATCCTCTGGACTTGA 60.163 40.000 0.00 0.00 32.98 3.02
6659 8177 4.342862 TCCTCTGGACTTGAAAGAACAG 57.657 45.455 0.00 5.02 35.89 3.16
6671 8189 4.963373 TGAAAGAACAGGACGGACATTAA 58.037 39.130 0.00 0.00 0.00 1.40
6716 8234 0.935831 CAAGCGTAACACGACACGGA 60.936 55.000 2.35 0.00 46.05 4.69
6723 8241 2.412421 AACACGACACGGAAGAGTAC 57.588 50.000 0.00 0.00 34.22 2.73
6756 8274 8.734218 TGTACGCCAGATAAAAATATTTACCA 57.266 30.769 0.01 0.00 33.98 3.25
6767 8285 1.025812 TATTTACCATTTGCCGGGCG 58.974 50.000 15.40 1.51 0.00 6.13
6768 8286 0.968393 ATTTACCATTTGCCGGGCGT 60.968 50.000 15.40 8.13 0.00 5.68
6770 8288 3.554696 TACCATTTGCCGGGCGTGT 62.555 57.895 15.40 8.99 0.00 4.49
6782 8300 1.540363 CGGGCGTGTATGCTTCCTAAT 60.540 52.381 0.00 0.00 34.52 1.73
6784 8302 2.224305 GGGCGTGTATGCTTCCTAATCT 60.224 50.000 0.00 0.00 34.52 2.40
6801 8319 7.571025 TCCTAATCTTACACCAAAATAGGACC 58.429 38.462 0.00 0.00 34.31 4.46
6920 8438 9.840427 CAATCTGTTTTTCGTATAACTCCAAAT 57.160 29.630 0.00 0.00 0.00 2.32
7012 8530 7.012421 ACAAAGTTTGTCTAACCAGATCTTCAC 59.988 37.037 15.58 0.00 40.56 3.18
7030 8548 5.361571 TCTTCACCGCAGTTATTAGATACCA 59.638 40.000 0.00 0.00 0.00 3.25
7037 8555 6.150318 CGCAGTTATTAGATACCAGAACGAT 58.850 40.000 0.00 0.00 0.00 3.73
7114 8632 3.084039 TCAGCACAATCTGGAATTCACC 58.916 45.455 7.93 0.00 34.91 4.02
7115 8633 2.821378 CAGCACAATCTGGAATTCACCA 59.179 45.455 7.93 0.00 38.33 4.17
7153 8671 6.003326 TCAATATTCTGGCAGTTTCAACTCA 58.997 36.000 15.27 0.00 37.08 3.41
7162 8680 6.894682 TGGCAGTTTCAACTCACCATATATA 58.105 36.000 6.81 0.00 37.37 0.86
7163 8681 6.765989 TGGCAGTTTCAACTCACCATATATAC 59.234 38.462 6.81 0.00 37.37 1.47
7164 8682 6.204882 GGCAGTTTCAACTCACCATATATACC 59.795 42.308 4.14 0.00 37.08 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.278127 GGGGACTGAACTTCAATCCGA 59.722 52.381 12.11 0.00 43.29 4.55
159 160 2.328319 GATCAGGAGGATGAAGGAGCT 58.672 52.381 0.00 0.00 36.00 4.09
198 205 6.827762 GGATGAATCTGACTGAAAAGGAGAAT 59.172 38.462 0.00 0.00 0.00 2.40
207 214 4.356436 TGGAGAGGATGAATCTGACTGAA 58.644 43.478 0.00 0.00 0.00 3.02
372 386 1.991339 TAGATCGGTGCCTCTCCGGA 61.991 60.000 2.93 2.93 46.82 5.14
461 478 1.320344 TTAGTGGCGAGACAGGCGAT 61.320 55.000 0.00 0.00 39.82 4.58
588 605 9.687717 CAAAATGCGTGGACATTTATTAAAATC 57.312 29.630 3.16 0.00 46.80 2.17
594 611 6.686630 TCTTCAAAATGCGTGGACATTTATT 58.313 32.000 3.16 0.00 46.80 1.40
603 620 2.399396 ACGTTCTTCAAAATGCGTGG 57.601 45.000 0.00 0.00 0.00 4.94
606 623 3.058914 AGAGGAACGTTCTTCAAAATGCG 60.059 43.478 33.46 0.00 35.92 4.73
620 637 7.746475 GTGAACATCTTTTGAAATAGAGGAACG 59.254 37.037 8.11 0.00 0.00 3.95
637 654 9.757227 TGGAAAATTTTAAATTCGTGAACATCT 57.243 25.926 2.75 0.00 0.00 2.90
640 657 9.534565 TCATGGAAAATTTTAAATTCGTGAACA 57.465 25.926 2.75 0.00 0.00 3.18
672 689 9.485206 CATCTTTTGAGATTCCAAGACATTTTT 57.515 29.630 0.00 0.00 0.00 1.94
673 690 8.645110 ACATCTTTTGAGATTCCAAGACATTTT 58.355 29.630 0.00 0.00 0.00 1.82
674 691 8.186709 ACATCTTTTGAGATTCCAAGACATTT 57.813 30.769 0.00 0.00 0.00 2.32
675 692 7.094032 GGACATCTTTTGAGATTCCAAGACATT 60.094 37.037 10.23 0.00 31.70 2.71
676 693 6.376581 GGACATCTTTTGAGATTCCAAGACAT 59.623 38.462 10.23 0.00 31.70 3.06
677 694 5.707298 GGACATCTTTTGAGATTCCAAGACA 59.293 40.000 10.23 0.00 31.70 3.41
678 695 5.124617 GGGACATCTTTTGAGATTCCAAGAC 59.875 44.000 14.08 0.00 32.34 3.01
679 696 5.222109 TGGGACATCTTTTGAGATTCCAAGA 60.222 40.000 14.08 0.00 32.34 3.02
680 697 5.012239 TGGGACATCTTTTGAGATTCCAAG 58.988 41.667 14.08 0.00 32.34 3.61
681 698 4.766891 GTGGGACATCTTTTGAGATTCCAA 59.233 41.667 14.08 5.79 44.52 3.53
682 699 4.202556 TGTGGGACATCTTTTGAGATTCCA 60.203 41.667 14.08 8.31 44.52 3.53
683 700 4.335416 TGTGGGACATCTTTTGAGATTCC 58.665 43.478 0.00 0.00 44.52 3.01
684 701 5.964958 TTGTGGGACATCTTTTGAGATTC 57.035 39.130 0.00 0.00 44.52 2.52
685 702 6.923199 ATTTGTGGGACATCTTTTGAGATT 57.077 33.333 0.00 0.00 44.52 2.40
695 712 9.218440 ACAATTTAATTCAATTTGTGGGACATC 57.782 29.630 0.00 0.00 44.52 3.06
752 769 4.014406 GTGGGTCGAGGAATACCATTTTT 58.986 43.478 0.00 0.00 38.94 1.94
759 776 2.232941 TGTTCAGTGGGTCGAGGAATAC 59.767 50.000 0.00 0.00 0.00 1.89
766 783 1.745890 CTGGTGTTCAGTGGGTCGA 59.254 57.895 0.00 0.00 38.64 4.20
774 791 3.716006 CGCGCACCTGGTGTTCAG 61.716 66.667 26.48 16.48 43.00 3.02
778 795 4.235762 AGAACGCGCACCTGGTGT 62.236 61.111 26.48 7.65 35.75 4.16
779 796 3.414700 GAGAACGCGCACCTGGTG 61.415 66.667 22.46 22.46 36.51 4.17
794 811 0.038159 GGTCGGGGAATAGCGATGAG 60.038 60.000 0.00 0.00 0.00 2.90
796 813 0.319900 CAGGTCGGGGAATAGCGATG 60.320 60.000 0.00 0.00 0.00 3.84
841 858 0.799393 GGACCGAGCTGCTTTCTTTC 59.201 55.000 2.53 0.00 0.00 2.62
842 859 0.951040 CGGACCGAGCTGCTTTCTTT 60.951 55.000 8.64 0.00 0.00 2.52
843 860 1.374758 CGGACCGAGCTGCTTTCTT 60.375 57.895 8.64 0.00 0.00 2.52
871 889 2.702270 AAAGGATTTGGCCCAGTTCT 57.298 45.000 0.00 0.00 36.60 3.01
897 915 3.052082 CGGTCTGCTGGCCTGTTG 61.052 66.667 12.78 4.74 0.00 3.33
898 916 3.241530 TCGGTCTGCTGGCCTGTT 61.242 61.111 12.78 0.00 0.00 3.16
903 921 4.767255 CTGGGTCGGTCTGCTGGC 62.767 72.222 0.00 0.00 0.00 4.85
923 941 3.064207 CAAGTAAAGTTAGCCACAGCGA 58.936 45.455 0.00 0.00 46.67 4.93
1167 1200 4.475135 GGCTTGTCCTCCTCGCCC 62.475 72.222 0.00 0.00 34.75 6.13
1210 1246 3.253838 CCCACCCGAGGAAACCCA 61.254 66.667 0.00 0.00 0.00 4.51
1253 1300 1.152830 ATCCAAACCAACCCAGCGT 59.847 52.632 0.00 0.00 0.00 5.07
1254 1301 1.178534 ACATCCAAACCAACCCAGCG 61.179 55.000 0.00 0.00 0.00 5.18
1255 1302 0.318120 CACATCCAAACCAACCCAGC 59.682 55.000 0.00 0.00 0.00 4.85
1256 1303 0.318120 GCACATCCAAACCAACCCAG 59.682 55.000 0.00 0.00 0.00 4.45
1257 1304 1.459455 CGCACATCCAAACCAACCCA 61.459 55.000 0.00 0.00 0.00 4.51
1258 1305 1.288752 CGCACATCCAAACCAACCC 59.711 57.895 0.00 0.00 0.00 4.11
1263 1310 3.951655 CTGCGCGCACATCCAAACC 62.952 63.158 33.09 0.00 0.00 3.27
1416 1463 3.469008 AGGTAGGGTTTTGCTTTTTGC 57.531 42.857 0.00 0.00 43.25 3.68
1419 1466 6.954102 AGATTCATAGGTAGGGTTTTGCTTTT 59.046 34.615 0.00 0.00 0.00 2.27
1420 1467 6.494059 AGATTCATAGGTAGGGTTTTGCTTT 58.506 36.000 0.00 0.00 0.00 3.51
1463 1510 2.292828 AACCATTGGTCCACTGAAGG 57.707 50.000 9.22 2.23 33.12 3.46
1466 1513 2.582052 GTCAAACCATTGGTCCACTGA 58.418 47.619 9.22 7.22 37.15 3.41
1468 1515 1.142060 TCGTCAAACCATTGGTCCACT 59.858 47.619 9.22 0.00 37.15 4.00
1475 1522 3.362295 CACAACACTCGTCAAACCATTG 58.638 45.455 0.00 0.00 37.92 2.82
1477 1524 1.333619 GCACAACACTCGTCAAACCAT 59.666 47.619 0.00 0.00 0.00 3.55
1478 1525 0.730265 GCACAACACTCGTCAAACCA 59.270 50.000 0.00 0.00 0.00 3.67
1482 1529 1.436195 GCCAGCACAACACTCGTCAA 61.436 55.000 0.00 0.00 0.00 3.18
1484 1531 1.835483 CTGCCAGCACAACACTCGTC 61.835 60.000 0.00 0.00 0.00 4.20
1485 1532 1.889105 CTGCCAGCACAACACTCGT 60.889 57.895 0.00 0.00 0.00 4.18
1486 1533 2.610694 CCTGCCAGCACAACACTCG 61.611 63.158 0.00 0.00 0.00 4.18
1539 1620 2.229203 GGACCCCGACCCCTTCTTT 61.229 63.158 0.00 0.00 0.00 2.52
1638 1719 3.066621 GGCAGAGACACACAGAGAGATAG 59.933 52.174 0.00 0.00 0.00 2.08
1639 1720 3.020274 GGCAGAGACACACAGAGAGATA 58.980 50.000 0.00 0.00 0.00 1.98
1640 1721 1.824230 GGCAGAGACACACAGAGAGAT 59.176 52.381 0.00 0.00 0.00 2.75
1648 1730 2.175878 ACAATCAGGCAGAGACACAC 57.824 50.000 0.00 0.00 0.00 3.82
1654 1736 4.946157 AGGTAATTCAACAATCAGGCAGAG 59.054 41.667 0.00 0.00 0.00 3.35
1679 1761 4.319190 CCACAACAATCGCTCGTAAAAGAA 60.319 41.667 0.00 0.00 0.00 2.52
1681 1763 3.059188 ACCACAACAATCGCTCGTAAAAG 60.059 43.478 0.00 0.00 0.00 2.27
1687 1769 1.721489 CGAAACCACAACAATCGCTCG 60.721 52.381 0.00 0.00 0.00 5.03
1689 1771 1.305201 ACGAAACCACAACAATCGCT 58.695 45.000 0.00 0.00 37.03 4.93
1721 1803 4.405116 ACCAAAACAGCAACAATCATGT 57.595 36.364 0.00 0.00 43.14 3.21
1727 1809 3.733337 ACACAAACCAAAACAGCAACAA 58.267 36.364 0.00 0.00 0.00 2.83
1729 1811 4.740741 AAACACAAACCAAAACAGCAAC 57.259 36.364 0.00 0.00 0.00 4.17
1748 1830 3.222173 TCCTTTGCTCCAGCTACAAAA 57.778 42.857 0.00 0.00 42.66 2.44
1761 1843 0.305922 CCGCGATCTTCATCCTTTGC 59.694 55.000 8.23 0.00 0.00 3.68
1776 1858 0.319383 ATATCTGCTTCAGCTCCGCG 60.319 55.000 0.00 0.00 42.66 6.46
1836 1921 3.192422 CACACCTGGTTCACAACAAAAGA 59.808 43.478 0.00 0.00 0.00 2.52
1863 1948 2.794103 ACATGCAGGCAAATCACACTA 58.206 42.857 0.00 0.00 0.00 2.74
1872 1957 5.618863 CGTTCAAAGTAATACATGCAGGCAA 60.619 40.000 0.00 0.00 0.00 4.52
1877 1962 5.645929 ACATCCGTTCAAAGTAATACATGCA 59.354 36.000 0.00 0.00 0.00 3.96
1878 1963 5.965334 CACATCCGTTCAAAGTAATACATGC 59.035 40.000 0.00 0.00 0.00 4.06
1879 1964 7.072177 ACACATCCGTTCAAAGTAATACATG 57.928 36.000 0.00 0.00 0.00 3.21
1880 1965 7.361713 CCAACACATCCGTTCAAAGTAATACAT 60.362 37.037 0.00 0.00 0.00 2.29
1906 1991 2.603173 GCAAAAGTATAGGATGCTGCGC 60.603 50.000 0.00 0.00 34.29 6.09
1920 2005 0.814010 AGACGGTGAAGCGCAAAAGT 60.814 50.000 11.47 0.91 0.00 2.66
1923 2008 2.250939 CCAGACGGTGAAGCGCAAA 61.251 57.895 11.47 0.00 0.00 3.68
1924 2009 2.664851 CCAGACGGTGAAGCGCAA 60.665 61.111 11.47 0.00 0.00 4.85
1925 2010 3.923864 ACCAGACGGTGAAGCGCA 61.924 61.111 11.47 0.00 46.79 6.09
1939 2024 2.286872 CTTTGGCAATGCAAAACACCA 58.713 42.857 7.79 0.00 27.77 4.17
1940 2025 1.603326 CCTTTGGCAATGCAAAACACC 59.397 47.619 7.79 0.00 27.77 4.16
1941 2026 2.287769 ACCTTTGGCAATGCAAAACAC 58.712 42.857 7.79 0.00 27.77 3.32
1942 2027 2.681848 CAACCTTTGGCAATGCAAAACA 59.318 40.909 7.79 0.00 27.77 2.83
1943 2028 2.541383 GCAACCTTTGGCAATGCAAAAC 60.541 45.455 16.39 0.00 37.00 2.43
1944 2029 1.674962 GCAACCTTTGGCAATGCAAAA 59.325 42.857 16.39 7.63 37.00 2.44
1962 2064 2.236893 TCAGATCACACTAGCATTGGCA 59.763 45.455 0.00 0.00 44.61 4.92
1973 2075 0.396435 TGGTGGTGGTCAGATCACAC 59.604 55.000 15.93 11.08 36.90 3.82
1977 2079 2.787473 TCATTGGTGGTGGTCAGATC 57.213 50.000 0.00 0.00 0.00 2.75
2009 2111 4.671831 TCCCTGGATGCAATTTGAGTTAA 58.328 39.130 0.00 0.00 0.00 2.01
2024 2126 6.074648 ACATGACTTTAAACAAATCCCTGGA 58.925 36.000 0.00 0.00 0.00 3.86
2025 2127 6.345096 ACATGACTTTAAACAAATCCCTGG 57.655 37.500 0.00 0.00 0.00 4.45
2026 2128 9.927668 AATTACATGACTTTAAACAAATCCCTG 57.072 29.630 0.00 0.00 0.00 4.45
2027 2129 9.927668 CAATTACATGACTTTAAACAAATCCCT 57.072 29.630 0.00 0.00 0.00 4.20
2036 2138 7.012515 ACCACACGACAATTACATGACTTTAAA 59.987 33.333 0.00 0.00 0.00 1.52
2058 2162 1.601419 AATGGCTGCTGCATGACCAC 61.601 55.000 17.89 0.00 41.91 4.16
2085 2189 4.380023 GGTGAAGTGTGTTGTTACAAAGCA 60.380 41.667 0.00 0.00 35.69 3.91
2110 2403 7.881775 AATCCAGCCTAACATAACCTTTTAG 57.118 36.000 0.00 0.00 0.00 1.85
2135 2428 4.962155 AGTTGCTAGCACAGTTTTCTAGT 58.038 39.130 19.17 0.00 33.99 2.57
2162 2455 9.677567 TTTAGTTAAATCAACAAGAAGTGATGC 57.322 29.630 0.00 0.00 39.81 3.91
2216 2511 8.256356 AGCAGACCAGAATAAGAATAGTACAT 57.744 34.615 0.00 0.00 0.00 2.29
2217 2512 7.661536 AGCAGACCAGAATAAGAATAGTACA 57.338 36.000 0.00 0.00 0.00 2.90
2220 2515 7.659390 GCATAAGCAGACCAGAATAAGAATAGT 59.341 37.037 0.00 0.00 41.58 2.12
2221 2516 8.027440 GCATAAGCAGACCAGAATAAGAATAG 57.973 38.462 0.00 0.00 41.58 1.73
2222 2517 7.969536 GCATAAGCAGACCAGAATAAGAATA 57.030 36.000 0.00 0.00 41.58 1.75
2223 2518 6.874288 GCATAAGCAGACCAGAATAAGAAT 57.126 37.500 0.00 0.00 41.58 2.40
2240 2535 3.777478 CAGCCAATGGAAACTGCATAAG 58.223 45.455 2.05 0.00 0.00 1.73
2262 2557 5.905181 ACGAAGTGTTTTGTTATAAACTGCG 59.095 36.000 10.30 10.30 42.51 5.18
2313 2608 7.739498 TTTACTCGGATAAAACAGAAAGCTT 57.261 32.000 0.00 0.00 0.00 3.74
2330 2625 8.348507 AGAACCTTACTACGGATTATTTACTCG 58.651 37.037 0.00 0.00 0.00 4.18
2341 2636 3.698040 CAGCCTAAGAACCTTACTACGGA 59.302 47.826 0.00 0.00 0.00 4.69
2373 2712 4.319694 GGTGAAAATTGCTGGCACATTTTC 60.320 41.667 26.13 26.13 39.81 2.29
2389 2728 6.693315 CCTTAGAACTGTGAAAGGTGAAAA 57.307 37.500 7.54 0.00 34.92 2.29
2420 2759 9.490379 CGTGCCCTTTAATAAGAGAAATACTAT 57.510 33.333 0.00 0.00 32.92 2.12
2421 2760 8.698210 TCGTGCCCTTTAATAAGAGAAATACTA 58.302 33.333 0.00 0.00 32.92 1.82
2422 2761 7.494952 GTCGTGCCCTTTAATAAGAGAAATACT 59.505 37.037 0.00 0.00 32.92 2.12
2444 2783 2.243957 CGTGTGTGCATGGTGTCGT 61.244 57.895 0.00 0.00 0.00 4.34
2445 2784 2.243957 ACGTGTGTGCATGGTGTCG 61.244 57.895 0.00 0.00 35.99 4.35
2446 2785 1.279539 CACGTGTGTGCATGGTGTC 59.720 57.895 7.58 0.00 39.67 3.67
2447 2786 3.419828 CACGTGTGTGCATGGTGT 58.580 55.556 7.58 0.00 39.67 4.16
2473 2813 4.679373 ATCTCATCACCGATACAAGCTT 57.321 40.909 0.00 0.00 0.00 3.74
2587 2942 2.373169 CCTGGCAGGAGGAGCATAATTA 59.627 50.000 29.96 0.00 37.67 1.40
2616 2971 2.887568 GGGTCTGATGCAGTCGCG 60.888 66.667 0.00 0.00 42.97 5.87
2742 3098 8.390354 CGAAATTATGCAGAACAAGATTACTCA 58.610 33.333 0.00 0.00 0.00 3.41
2743 3099 8.391106 ACGAAATTATGCAGAACAAGATTACTC 58.609 33.333 0.00 0.00 0.00 2.59
2744 3100 8.268850 ACGAAATTATGCAGAACAAGATTACT 57.731 30.769 0.00 0.00 0.00 2.24
2745 3101 9.982291 TTACGAAATTATGCAGAACAAGATTAC 57.018 29.630 0.00 0.00 0.00 1.89
2756 3112 8.064222 CCAAGTACTCATTACGAAATTATGCAG 58.936 37.037 0.00 0.00 35.61 4.41
2787 3143 3.390967 TGTGTGGTTGATTTCTCAGAGGA 59.609 43.478 0.00 0.00 31.68 3.71
2817 3173 8.426569 ACCACTCCACTACTAACTACAATAAA 57.573 34.615 0.00 0.00 0.00 1.40
2818 3174 9.182214 CTACCACTCCACTACTAACTACAATAA 57.818 37.037 0.00 0.00 0.00 1.40
2821 3177 5.948162 CCTACCACTCCACTACTAACTACAA 59.052 44.000 0.00 0.00 0.00 2.41
2825 3181 3.245514 TGCCTACCACTCCACTACTAACT 60.246 47.826 0.00 0.00 0.00 2.24
2865 3222 7.992008 TCCAACACTTTTATTCGAAGAAAACT 58.008 30.769 22.93 13.61 45.90 2.66
2866 3223 7.096599 GCTCCAACACTTTTATTCGAAGAAAAC 60.097 37.037 22.93 9.37 45.90 2.43
2874 3231 5.551760 AGATGCTCCAACACTTTTATTCG 57.448 39.130 0.00 0.00 0.00 3.34
2918 3284 1.401761 AGGCATGCAGTGTTTGTTCA 58.598 45.000 21.36 0.00 0.00 3.18
2919 3285 2.223782 TGAAGGCATGCAGTGTTTGTTC 60.224 45.455 21.36 8.76 0.00 3.18
2976 3656 0.178873 AGTCTGTCCCTTGGCCCTTA 60.179 55.000 0.00 0.00 0.00 2.69
2998 3678 1.837439 AGTGAATTCGGGACTGGCATA 59.163 47.619 0.04 0.00 0.00 3.14
3006 3686 2.232696 TCGACATTGAGTGAATTCGGGA 59.767 45.455 0.04 0.00 31.25 5.14
3024 3704 0.687920 TAAACCCCATGTGTGCTCGA 59.312 50.000 0.00 0.00 0.00 4.04
3039 3719 6.183360 CGAACAGTTACAGTTACGGGATAAAC 60.183 42.308 0.00 0.00 0.00 2.01
3045 3725 2.331194 CCGAACAGTTACAGTTACGGG 58.669 52.381 16.84 6.90 36.71 5.28
3046 3726 2.331194 CCCGAACAGTTACAGTTACGG 58.669 52.381 17.32 17.32 38.35 4.02
3047 3727 1.723003 GCCCGAACAGTTACAGTTACG 59.277 52.381 0.00 0.36 0.00 3.18
3048 3728 2.071540 GGCCCGAACAGTTACAGTTAC 58.928 52.381 0.00 0.00 0.00 2.50
3055 3766 1.302192 GTGCTGGCCCGAACAGTTA 60.302 57.895 0.00 0.00 38.22 2.24
3117 3839 3.904965 GTTCCCTCCCCTCTCCTAATAAG 59.095 52.174 0.00 0.00 0.00 1.73
3125 3847 3.116174 ACTTTATGTTCCCTCCCCTCTC 58.884 50.000 0.00 0.00 0.00 3.20
3147 3869 1.244816 GGAGGGGAAAAACCTTGTCG 58.755 55.000 0.00 0.00 38.79 4.35
3150 3872 1.429299 AGAGGGAGGGGAAAAACCTTG 59.571 52.381 0.00 0.00 38.79 3.61
3262 4268 4.350368 TGAACCAACTAGATCAAGCACA 57.650 40.909 0.00 0.00 0.00 4.57
3266 4272 6.238320 GCTTAGCATGAACCAACTAGATCAAG 60.238 42.308 0.00 0.00 0.00 3.02
3289 4295 5.420104 CCTAAATGTCTTTCAAGGGAATGCT 59.580 40.000 0.00 0.00 31.93 3.79
3353 4359 7.066284 GCCTGGGCAAATGATATACTTGTATAG 59.934 40.741 6.75 0.00 41.49 1.31
3660 4674 5.792741 TCTTGCCCATTTGTGGAATAAAAG 58.207 37.500 0.00 0.00 28.42 2.27
3706 4720 7.040548 TCGATATATGCCTGAAAATGCATTTGA 60.041 33.333 24.74 13.62 45.52 2.69
3873 4887 4.917415 GCACATTATGGAGAACACACAAAC 59.083 41.667 0.00 0.00 0.00 2.93
3986 5151 4.759516 AAGTGGCAGGTAATTAAACACG 57.240 40.909 0.00 0.00 32.98 4.49
4225 5395 7.330946 GCAAACAAAAGTACCTCAAACTCTTTT 59.669 33.333 0.00 0.00 38.36 2.27
4334 5509 7.892609 AGTTCATACATGTATTATGCTCGGTA 58.107 34.615 15.85 0.00 0.00 4.02
4374 5549 2.806945 TACCTGGCTTCATTTCCCTG 57.193 50.000 0.00 0.00 0.00 4.45
4482 5665 4.389374 CTGCCTGGAGTTTGTTTCTTCTA 58.611 43.478 0.00 0.00 0.00 2.10
4703 5900 4.004982 GCCCATGAAAAGCACATTTGATT 58.995 39.130 0.00 0.00 30.73 2.57
4705 5902 2.633967 AGCCCATGAAAAGCACATTTGA 59.366 40.909 0.00 0.00 0.00 2.69
4789 5986 2.030363 CGTCCATGCTGTTAGCCAAAAA 60.030 45.455 0.00 0.00 41.51 1.94
4895 6092 4.181309 ACTAGTAGAGCTGCAGTTCAAC 57.819 45.455 29.15 16.14 0.00 3.18
4925 6124 2.945008 CCTGGAATACGATGCAACACAT 59.055 45.455 0.00 0.00 43.54 3.21
4936 6135 2.827715 AGGCTCCTCCTGGAATACG 58.172 57.895 0.00 0.00 45.54 3.06
5011 6210 1.933051 TCCTCCTCTTCCTCCTCATCA 59.067 52.381 0.00 0.00 0.00 3.07
5106 6305 9.771534 AGAACCTAAGCTAGTCATCAAATAATC 57.228 33.333 0.00 0.00 0.00 1.75
5139 6338 7.821846 AGAAGAGATGTCAAAACATAGTTCCTC 59.178 37.037 0.00 0.00 46.20 3.71
5157 6356 8.317679 AGTGCTATAAACAGAACAAGAAGAGAT 58.682 33.333 0.00 0.00 0.00 2.75
5158 6357 7.671302 AGTGCTATAAACAGAACAAGAAGAGA 58.329 34.615 0.00 0.00 0.00 3.10
5307 6507 2.086869 CAGCTCCACAACATACTTGGG 58.913 52.381 0.00 0.00 0.00 4.12
5316 6516 3.550842 CCAAACTAAAGCAGCTCCACAAC 60.551 47.826 0.00 0.00 0.00 3.32
5317 6517 2.622942 CCAAACTAAAGCAGCTCCACAA 59.377 45.455 0.00 0.00 0.00 3.33
5319 6519 1.068264 GCCAAACTAAAGCAGCTCCAC 60.068 52.381 0.00 0.00 0.00 4.02
5320 6520 1.202927 AGCCAAACTAAAGCAGCTCCA 60.203 47.619 0.00 0.00 0.00 3.86
5321 6521 1.539157 AGCCAAACTAAAGCAGCTCC 58.461 50.000 0.00 0.00 0.00 4.70
5323 6523 7.260603 CAATAATAAGCCAAACTAAAGCAGCT 58.739 34.615 0.00 0.00 0.00 4.24
5325 6525 6.197096 CGCAATAATAAGCCAAACTAAAGCAG 59.803 38.462 0.00 0.00 0.00 4.24
5326 6526 6.033341 CGCAATAATAAGCCAAACTAAAGCA 58.967 36.000 0.00 0.00 0.00 3.91
5559 6764 5.647589 CAAATGAGTTCTCCACATGATTGG 58.352 41.667 0.00 0.00 38.10 3.16
5582 6787 3.248266 CCTGCAAAAACAGCAAGATAGC 58.752 45.455 0.00 0.00 42.17 2.97
5671 6876 3.491447 GCATGGAATGGGAATAAGTGCAC 60.491 47.826 9.40 9.40 46.86 4.57
5673 6878 2.694628 TGCATGGAATGGGAATAAGTGC 59.305 45.455 0.00 0.00 46.86 4.40
5676 6881 3.576982 AGCATGCATGGAATGGGAATAAG 59.423 43.478 27.34 0.00 46.86 1.73
5677 6882 3.575256 GAGCATGCATGGAATGGGAATAA 59.425 43.478 27.34 0.00 46.86 1.40
5687 6892 0.399075 ATCATCGGAGCATGCATGGA 59.601 50.000 27.34 16.25 0.00 3.41
5690 6895 2.265589 TGAATCATCGGAGCATGCAT 57.734 45.000 21.98 4.75 0.00 3.96
5726 6931 3.499918 AGATCAACCTGCAAAACGAGAAG 59.500 43.478 0.00 0.00 0.00 2.85
5732 6937 4.836125 TGAGAAGATCAACCTGCAAAAC 57.164 40.909 0.00 0.00 34.02 2.43
5821 7027 1.065199 TGATCTTACTTGGCTGCCAGG 60.065 52.381 27.02 27.02 36.63 4.45
5884 7090 4.456566 GGGAAGGCGTTAATGTTTCAACTA 59.543 41.667 12.84 0.00 0.00 2.24
6041 7260 3.706698 CTCGACGGAAGCTGATATTTGA 58.293 45.455 0.00 0.00 0.00 2.69
6051 7270 0.179124 AGATTCAGCTCGACGGAAGC 60.179 55.000 0.47 0.47 38.89 3.86
6055 7274 1.661112 GGAAAAGATTCAGCTCGACGG 59.339 52.381 0.00 0.00 37.29 4.79
6057 7276 2.010497 GGGGAAAAGATTCAGCTCGAC 58.990 52.381 0.00 0.00 37.29 4.20
6187 7406 2.124942 CCTGGGAAGCGGAAGAGC 60.125 66.667 0.00 0.00 37.41 4.09
6317 7552 4.118410 GTTCTCATGCATGGACTACAGAG 58.882 47.826 25.97 13.35 0.00 3.35
6318 7553 3.515104 TGTTCTCATGCATGGACTACAGA 59.485 43.478 25.97 16.79 0.00 3.41
6324 7559 5.355071 TCATAACTTGTTCTCATGCATGGAC 59.645 40.000 25.97 20.49 0.00 4.02
6373 7608 7.970061 GCATCACTCTTCATAACAGCAATAAAA 59.030 33.333 0.00 0.00 0.00 1.52
6417 7652 4.419522 ACAGAAAATTCACCACGTATGC 57.580 40.909 0.00 0.00 0.00 3.14
6455 7695 3.261390 AGCACTCAAAGCTCTCTTCTCAT 59.739 43.478 0.00 0.00 38.01 2.90
6478 7718 0.323178 AAGCATCTGTTCCCCAGCAG 60.323 55.000 0.00 0.00 41.25 4.24
6491 7731 7.339466 TCCAGAAAAAGTATTCCCTAAAGCATC 59.661 37.037 0.00 0.00 0.00 3.91
6507 7747 4.829492 AGACCCTGATTTGTCCAGAAAAAG 59.171 41.667 0.00 0.00 33.65 2.27
6509 7749 4.453480 AGACCCTGATTTGTCCAGAAAA 57.547 40.909 0.00 0.00 33.65 2.29
6514 7754 1.425066 AGCAAGACCCTGATTTGTCCA 59.575 47.619 0.00 0.00 31.76 4.02
6533 7773 6.986231 GCCTATGAAAAATTATTGTTCCCCAG 59.014 38.462 5.50 0.97 0.00 4.45
6536 7776 8.011844 AGAGCCTATGAAAAATTATTGTTCCC 57.988 34.615 5.50 0.00 0.00 3.97
6564 8081 5.194740 TGGTTGGGGATGGATGAAATTACTA 59.805 40.000 0.00 0.00 0.00 1.82
6591 8108 5.649395 TGTAAGAAAGCAAGAGATGATTGGG 59.351 40.000 0.00 0.00 37.79 4.12
6635 8153 5.794894 TGTTCTTTCAAGTCCAGAGGATAC 58.205 41.667 0.00 0.00 32.73 2.24
6649 8167 3.485463 AATGTCCGTCCTGTTCTTTCA 57.515 42.857 0.00 0.00 0.00 2.69
6651 8169 4.202430 ACCTTAATGTCCGTCCTGTTCTTT 60.202 41.667 0.00 0.00 0.00 2.52
6659 8177 2.496470 AGTCTCACCTTAATGTCCGTCC 59.504 50.000 0.00 0.00 0.00 4.79
6671 8189 2.614259 AGACACATGGAAGTCTCACCT 58.386 47.619 10.73 0.00 40.96 4.00
6716 8234 2.936498 GCGTACATTGCATGGTACTCTT 59.064 45.455 19.87 0.00 38.14 2.85
6723 8241 1.311859 ATCTGGCGTACATTGCATGG 58.688 50.000 0.00 0.00 33.60 3.66
6756 8274 2.770589 GCATACACGCCCGGCAAAT 61.771 57.895 10.77 0.00 0.00 2.32
6767 8285 6.346096 TGGTGTAAGATTAGGAAGCATACAC 58.654 40.000 12.20 12.20 40.35 2.90
6768 8286 6.553953 TGGTGTAAGATTAGGAAGCATACA 57.446 37.500 0.00 0.00 0.00 2.29
6782 8300 5.942961 TGTTGGTCCTATTTTGGTGTAAGA 58.057 37.500 0.00 0.00 0.00 2.10
6784 8302 5.533154 CACTGTTGGTCCTATTTTGGTGTAA 59.467 40.000 0.00 0.00 0.00 2.41
6801 8319 7.403312 TGGAATGGATAATAAACCACTGTTG 57.597 36.000 0.00 0.00 39.06 3.33
6815 8333 4.343814 TGAGACGTGCTAATGGAATGGATA 59.656 41.667 0.00 0.00 0.00 2.59
6941 8459 2.196742 TGCTATCCCTCACCCTCAAT 57.803 50.000 0.00 0.00 0.00 2.57
7012 8530 4.680110 CGTTCTGGTATCTAATAACTGCGG 59.320 45.833 0.00 0.00 0.00 5.69
7030 8548 2.483188 GGATGGCGGACTTTATCGTTCT 60.483 50.000 0.00 0.00 0.00 3.01
7037 8555 1.410004 ATCTCGGATGGCGGACTTTA 58.590 50.000 0.00 0.00 0.00 1.85
7140 8658 7.190920 GGTATATATGGTGAGTTGAAACTGC 57.809 40.000 0.00 0.00 39.88 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.