Multiple sequence alignment - TraesCS6B01G456100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G456100 chr6B 100.000 9467 0 0 1 9467 712394555 712385089 0.000000e+00 17483.0
1 TraesCS6B01G456100 chr6B 76.515 132 23 7 6137 6267 134811019 134810895 2.210000e-06 65.8
2 TraesCS6B01G456100 chr5D 95.862 3093 76 24 765 3817 431708344 431711424 0.000000e+00 4955.0
3 TraesCS6B01G456100 chr5D 96.205 3030 60 18 3810 6810 431721008 431724011 0.000000e+00 4907.0
4 TraesCS6B01G456100 chr5D 94.794 2209 51 30 6808 9001 431724483 431726642 0.000000e+00 3384.0
5 TraesCS6B01G456100 chr5D 96.247 453 16 1 9016 9467 431727081 431727533 0.000000e+00 741.0
6 TraesCS6B01G456100 chr1B 87.984 4136 350 88 2761 6808 26973787 26969711 0.000000e+00 4748.0
7 TraesCS6B01G456100 chr1B 88.484 2032 142 45 6812 8776 26969380 26967374 0.000000e+00 2372.0
8 TraesCS6B01G456100 chr1B 80.484 1281 146 65 740 1966 26975423 26974193 0.000000e+00 885.0
9 TraesCS6B01G456100 chr1B 88.546 454 36 7 9016 9467 26967028 26966589 3.890000e-148 536.0
10 TraesCS6B01G456100 chr1B 78.548 303 40 13 642 936 610008416 610008131 9.770000e-40 176.0
11 TraesCS6B01G456100 chr1B 87.402 127 14 2 645 769 26977646 26977520 2.760000e-30 145.0
12 TraesCS6B01G456100 chr2B 87.798 3483 321 74 2761 6193 725135212 725138640 0.000000e+00 3982.0
13 TraesCS6B01G456100 chr2B 88.563 2011 146 48 6812 8774 725139738 725141712 0.000000e+00 2362.0
14 TraesCS6B01G456100 chr2B 93.905 525 27 5 6291 6812 725138710 725139232 0.000000e+00 787.0
15 TraesCS6B01G456100 chr2B 83.077 845 102 34 1237 2063 725133820 725134641 0.000000e+00 730.0
16 TraesCS6B01G456100 chr2B 90.529 454 31 4 9016 9467 725142044 725142487 2.940000e-164 590.0
17 TraesCS6B01G456100 chr2B 83.379 367 42 9 2071 2434 725134700 725135050 1.190000e-83 322.0
18 TraesCS6B01G456100 chr7A 88.776 3038 247 61 2762 5751 675271719 675268728 0.000000e+00 3635.0
19 TraesCS6B01G456100 chr7A 89.794 1891 122 39 6938 8780 675267516 675265649 0.000000e+00 2357.0
20 TraesCS6B01G456100 chr7A 81.259 1382 151 60 645 1966 675273468 675272135 0.000000e+00 1018.0
21 TraesCS6B01G456100 chr7A 93.893 524 29 3 6291 6812 675268517 675267995 0.000000e+00 787.0
22 TraesCS6B01G456100 chr7A 87.939 456 34 9 9016 9467 675265308 675264870 1.410000e-142 518.0
23 TraesCS6B01G456100 chr7A 83.271 269 37 8 2168 2434 675272141 675271879 3.420000e-59 241.0
24 TraesCS6B01G456100 chr7A 87.970 133 15 1 6812 6943 675267669 675267537 1.270000e-33 156.0
25 TraesCS6B01G456100 chr7B 93.792 1772 79 21 645 2407 570108821 570107072 0.000000e+00 2634.0
26 TraesCS6B01G456100 chr6A 93.338 1576 90 15 642 2211 610266999 610265433 0.000000e+00 2314.0
27 TraesCS6B01G456100 chr6A 76.429 140 19 4 6122 6261 77287468 77287593 7.940000e-06 63.9
28 TraesCS6B01G456100 chr4A 92.317 1575 93 17 642 2211 210945014 210943463 0.000000e+00 2213.0
29 TraesCS6B01G456100 chr3A 92.582 1375 75 16 841 2211 687130504 687129153 0.000000e+00 1949.0
30 TraesCS6B01G456100 chr3A 93.750 208 12 1 642 848 687127444 687127651 2.570000e-80 311.0
31 TraesCS6B01G456100 chr3A 98.077 52 1 0 642 693 687130505 687130556 3.640000e-14 91.6
32 TraesCS6B01G456100 chr3B 83.636 330 29 12 6814 7120 97078863 97079190 4.330000e-73 287.0
33 TraesCS6B01G456100 chr3B 79.753 405 43 25 3012 3391 736885849 736885459 3.390000e-64 257.0
34 TraesCS6B01G456100 chrUn 79.753 405 43 25 3012 3391 287443629 287444019 3.390000e-64 257.0
35 TraesCS6B01G456100 chrUn 87.059 85 9 2 3322 3406 40654121 40654039 2.810000e-15 95.3
36 TraesCS6B01G456100 chr3D 90.270 185 16 2 6937 7120 61314233 61314416 3.420000e-59 241.0
37 TraesCS6B01G456100 chr1A 76.667 240 32 11 2107 2346 542172433 542172648 2.790000e-20 111.0
38 TraesCS6B01G456100 chr6D 91.139 79 6 1 642 719 326980432 326980510 1.300000e-18 106.0
39 TraesCS6B01G456100 chr5B 91.139 79 6 1 642 719 698043274 698043352 1.300000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G456100 chr6B 712385089 712394555 9466 True 17483.000000 17483 100.000000 1 9467 1 chr6B.!!$R2 9466
1 TraesCS6B01G456100 chr5D 431708344 431711424 3080 False 4955.000000 4955 95.862000 765 3817 1 chr5D.!!$F1 3052
2 TraesCS6B01G456100 chr5D 431721008 431727533 6525 False 3010.666667 4907 95.748667 3810 9467 3 chr5D.!!$F2 5657
3 TraesCS6B01G456100 chr1B 26966589 26977646 11057 True 1737.200000 4748 86.580000 645 9467 5 chr1B.!!$R2 8822
4 TraesCS6B01G456100 chr2B 725133820 725142487 8667 False 1462.166667 3982 87.875167 1237 9467 6 chr2B.!!$F1 8230
5 TraesCS6B01G456100 chr7A 675264870 675273468 8598 True 1244.571429 3635 87.557429 645 9467 7 chr7A.!!$R1 8822
6 TraesCS6B01G456100 chr7B 570107072 570108821 1749 True 2634.000000 2634 93.792000 645 2407 1 chr7B.!!$R1 1762
7 TraesCS6B01G456100 chr6A 610265433 610266999 1566 True 2314.000000 2314 93.338000 642 2211 1 chr6A.!!$R1 1569
8 TraesCS6B01G456100 chr4A 210943463 210945014 1551 True 2213.000000 2213 92.317000 642 2211 1 chr4A.!!$R1 1569
9 TraesCS6B01G456100 chr3A 687129153 687130504 1351 True 1949.000000 1949 92.582000 841 2211 1 chr3A.!!$R1 1370
10 TraesCS6B01G456100 chr3A 687127444 687130556 3112 False 201.300000 311 95.913500 642 848 2 chr3A.!!$F1 206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 271 0.030504 TGCACACAACCGCATTTCTG 59.969 50.000 0.00 0.0 31.95 3.02 F
271 272 0.030638 GCACACAACCGCATTTCTGT 59.969 50.000 0.00 0.0 0.00 3.41 F
330 331 0.034186 TCCATTCAATCGGCTGGCTT 60.034 50.000 0.00 0.0 0.00 4.35 F
372 373 0.039346 CATGCCACATGCGACACAAA 60.039 50.000 0.00 0.0 45.60 2.83 F
605 606 0.179150 GCCGCGCAAAATACAATCCA 60.179 50.000 8.75 0.0 0.00 3.41 F
2304 4588 0.521735 GGCTTTCGGAATGACCACAC 59.478 55.000 7.72 0.0 38.90 3.82 F
2587 4931 0.831307 ACTCCCACCGGATAGCTTTC 59.169 55.000 9.46 0.0 37.60 2.62 F
2910 5259 1.181741 AAGCAGCGACAGTCTGGAGA 61.182 55.000 4.53 0.0 32.41 3.71 F
3983 6351 1.270305 GGCAGGAAACCAAAAGCCTTC 60.270 52.381 0.00 0.0 39.02 3.46 F
4455 6839 0.109597 GCAACTGAAATGGGTGCTCG 60.110 55.000 0.00 0.0 0.00 5.03 F
5673 8206 2.262423 AGGAGCGCAACTCTTTTCTT 57.738 45.000 11.47 0.0 45.48 2.52 F
6230 8779 3.086282 TCTACACGCTCACCATAGTTCA 58.914 45.455 0.00 0.0 0.00 3.18 F
7275 10723 0.601558 CGGAAGTTCTTCGAGGACCA 59.398 55.000 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2121 4404 1.244019 ATTTGACGCTGCCAAGGGAC 61.244 55.000 0.00 0.00 39.59 4.46 R
2190 4474 7.275920 AGGAGCGTCTTAACATCTATTCATTT 58.724 34.615 0.00 0.00 0.00 2.32 R
2339 4623 9.453572 AAGAATGAAGACATAATGTGAGCTAAA 57.546 29.630 0.00 0.00 35.50 1.85 R
2577 4921 3.994392 TGAACAGAACGTGAAAGCTATCC 59.006 43.478 0.00 0.00 0.00 2.59 R
2802 5149 1.308998 GCACACCTACATGTATGGGC 58.691 55.000 15.88 15.88 33.68 5.36 R
4416 6800 1.361668 AAACAGATGCTGCGCCGTAG 61.362 55.000 4.18 0.00 34.37 3.51 R
4421 6805 1.372004 TTGCAAACAGATGCTGCGC 60.372 52.632 0.00 0.00 46.54 6.09 R
4447 6831 2.845752 TAATGCCGTGACGAGCACCC 62.846 60.000 19.97 0.00 44.85 4.61 R
5814 8347 0.179043 TGAACAGCTTTGTACGGCCA 60.179 50.000 2.24 0.00 0.00 5.36 R
6230 8779 0.251033 TGCTGATTGGTTGAGCTGCT 60.251 50.000 0.00 0.00 33.66 4.24 R
6528 9116 0.325860 ACCCCTACCGTAGATTGGCA 60.326 55.000 7.16 0.00 0.00 4.92 R
8040 11518 2.270434 AGAGAGCCCTGACCCATTAA 57.730 50.000 0.00 0.00 0.00 1.40 R
8938 13239 0.179054 GCGAATGGGAGGGACTTACC 60.179 60.000 0.00 0.00 41.55 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.514330 AAACAACTACTACTTCAATTGGTTGA 57.486 30.769 19.85 0.00 42.41 3.18
36 37 7.492352 ACAACTACTACTTCAATTGGTTGAC 57.508 36.000 19.85 0.00 43.72 3.18
37 38 7.280356 ACAACTACTACTTCAATTGGTTGACT 58.720 34.615 19.85 3.45 43.72 3.41
38 39 7.773690 ACAACTACTACTTCAATTGGTTGACTT 59.226 33.333 19.85 2.93 43.72 3.01
39 40 7.730364 ACTACTACTTCAATTGGTTGACTTG 57.270 36.000 5.42 0.00 43.72 3.16
40 41 7.280356 ACTACTACTTCAATTGGTTGACTTGT 58.720 34.615 5.42 0.00 43.72 3.16
41 42 8.426489 ACTACTACTTCAATTGGTTGACTTGTA 58.574 33.333 5.42 0.00 43.72 2.41
42 43 9.268268 CTACTACTTCAATTGGTTGACTTGTAA 57.732 33.333 5.42 0.00 43.72 2.41
43 44 8.691661 ACTACTTCAATTGGTTGACTTGTAAT 57.308 30.769 5.42 0.00 43.72 1.89
44 45 8.784043 ACTACTTCAATTGGTTGACTTGTAATC 58.216 33.333 5.42 0.00 43.72 1.75
45 46 7.581213 ACTTCAATTGGTTGACTTGTAATCA 57.419 32.000 5.42 0.00 43.72 2.57
46 47 8.006298 ACTTCAATTGGTTGACTTGTAATCAA 57.994 30.769 5.42 0.00 43.72 2.57
63 64 8.697846 TGTAATCAACTACATAGAAAAGACGG 57.302 34.615 0.00 0.00 0.00 4.79
64 65 8.525316 TGTAATCAACTACATAGAAAAGACGGA 58.475 33.333 0.00 0.00 0.00 4.69
65 66 7.829378 AATCAACTACATAGAAAAGACGGAC 57.171 36.000 0.00 0.00 0.00 4.79
66 67 6.335471 TCAACTACATAGAAAAGACGGACA 57.665 37.500 0.00 0.00 0.00 4.02
67 68 6.751157 TCAACTACATAGAAAAGACGGACAA 58.249 36.000 0.00 0.00 0.00 3.18
68 69 6.866770 TCAACTACATAGAAAAGACGGACAAG 59.133 38.462 0.00 0.00 0.00 3.16
69 70 5.721232 ACTACATAGAAAAGACGGACAAGG 58.279 41.667 0.00 0.00 0.00 3.61
70 71 3.335579 ACATAGAAAAGACGGACAAGGC 58.664 45.455 0.00 0.00 0.00 4.35
71 72 2.074547 TAGAAAAGACGGACAAGGCG 57.925 50.000 0.00 0.00 0.00 5.52
72 73 0.106149 AGAAAAGACGGACAAGGCGT 59.894 50.000 0.00 0.00 0.00 5.68
73 74 0.511653 GAAAAGACGGACAAGGCGTC 59.488 55.000 0.00 0.00 44.57 5.19
83 84 3.559238 GACAAGGCGTCAACATTTCAT 57.441 42.857 0.00 0.00 44.69 2.57
84 85 3.236816 GACAAGGCGTCAACATTTCATG 58.763 45.455 0.00 0.00 44.69 3.07
85 86 2.884012 ACAAGGCGTCAACATTTCATGA 59.116 40.909 0.00 0.00 0.00 3.07
86 87 3.236816 CAAGGCGTCAACATTTCATGAC 58.763 45.455 0.00 0.00 41.95 3.06
87 88 1.812571 AGGCGTCAACATTTCATGACC 59.187 47.619 0.00 0.00 42.29 4.02
88 89 1.539388 GGCGTCAACATTTCATGACCA 59.461 47.619 0.00 0.00 42.29 4.02
89 90 2.584791 GCGTCAACATTTCATGACCAC 58.415 47.619 0.00 0.00 42.29 4.16
90 91 2.031245 GCGTCAACATTTCATGACCACA 60.031 45.455 0.00 0.00 42.29 4.17
91 92 3.549827 GCGTCAACATTTCATGACCACAA 60.550 43.478 0.00 0.00 42.29 3.33
92 93 4.605968 CGTCAACATTTCATGACCACAAA 58.394 39.130 0.00 0.00 42.29 2.83
93 94 4.676471 CGTCAACATTTCATGACCACAAAG 59.324 41.667 0.00 0.00 42.29 2.77
94 95 4.984161 GTCAACATTTCATGACCACAAAGG 59.016 41.667 0.00 0.00 40.00 3.11
115 116 9.559958 CAAAGGTTTTTGTCTTACTAGCATATG 57.440 33.333 0.00 0.00 39.05 1.78
116 117 7.865706 AGGTTTTTGTCTTACTAGCATATGG 57.134 36.000 4.56 0.00 0.00 2.74
117 118 7.630082 AGGTTTTTGTCTTACTAGCATATGGA 58.370 34.615 4.56 0.00 0.00 3.41
118 119 8.107095 AGGTTTTTGTCTTACTAGCATATGGAA 58.893 33.333 4.56 0.00 0.00 3.53
119 120 8.736244 GGTTTTTGTCTTACTAGCATATGGAAA 58.264 33.333 4.56 0.00 0.00 3.13
122 123 9.733556 TTTTGTCTTACTAGCATATGGAAAAGA 57.266 29.630 4.56 1.54 0.00 2.52
123 124 9.733556 TTTGTCTTACTAGCATATGGAAAAGAA 57.266 29.630 4.56 0.00 0.00 2.52
124 125 9.733556 TTGTCTTACTAGCATATGGAAAAGAAA 57.266 29.630 4.56 0.00 0.00 2.52
125 126 9.733556 TGTCTTACTAGCATATGGAAAAGAAAA 57.266 29.630 4.56 0.00 0.00 2.29
127 128 9.959721 TCTTACTAGCATATGGAAAAGAAAAGT 57.040 29.630 4.56 0.00 0.00 2.66
128 129 9.994432 CTTACTAGCATATGGAAAAGAAAAGTG 57.006 33.333 4.56 0.00 0.00 3.16
129 130 6.856895 ACTAGCATATGGAAAAGAAAAGTGC 58.143 36.000 4.56 0.00 0.00 4.40
130 131 5.077134 AGCATATGGAAAAGAAAAGTGCC 57.923 39.130 4.56 0.00 0.00 5.01
131 132 4.774200 AGCATATGGAAAAGAAAAGTGCCT 59.226 37.500 4.56 0.00 0.00 4.75
132 133 5.105063 GCATATGGAAAAGAAAAGTGCCTC 58.895 41.667 4.56 0.00 0.00 4.70
133 134 5.105595 GCATATGGAAAAGAAAAGTGCCTCT 60.106 40.000 4.56 0.00 0.00 3.69
134 135 4.861102 ATGGAAAAGAAAAGTGCCTCTG 57.139 40.909 0.00 0.00 0.00 3.35
135 136 3.631250 TGGAAAAGAAAAGTGCCTCTGT 58.369 40.909 0.00 0.00 0.00 3.41
136 137 3.632145 TGGAAAAGAAAAGTGCCTCTGTC 59.368 43.478 0.00 0.00 0.00 3.51
137 138 3.632145 GGAAAAGAAAAGTGCCTCTGTCA 59.368 43.478 0.00 0.00 0.00 3.58
138 139 4.097892 GGAAAAGAAAAGTGCCTCTGTCAA 59.902 41.667 0.00 0.00 0.00 3.18
139 140 4.907879 AAAGAAAAGTGCCTCTGTCAAG 57.092 40.909 0.00 0.00 0.00 3.02
140 141 3.845781 AGAAAAGTGCCTCTGTCAAGA 57.154 42.857 0.00 0.00 0.00 3.02
141 142 4.156455 AGAAAAGTGCCTCTGTCAAGAA 57.844 40.909 0.00 0.00 30.03 2.52
142 143 4.133078 AGAAAAGTGCCTCTGTCAAGAAG 58.867 43.478 0.00 0.00 30.03 2.85
143 144 1.889545 AAGTGCCTCTGTCAAGAAGC 58.110 50.000 0.00 0.00 39.88 3.86
144 145 0.761187 AGTGCCTCTGTCAAGAAGCA 59.239 50.000 0.00 0.00 45.58 3.91
146 147 2.346766 TGCCTCTGTCAAGAAGCAAA 57.653 45.000 0.00 0.00 44.96 3.68
147 148 1.949525 TGCCTCTGTCAAGAAGCAAAC 59.050 47.619 0.00 0.00 44.96 2.93
148 149 1.949525 GCCTCTGTCAAGAAGCAAACA 59.050 47.619 0.00 0.00 39.34 2.83
149 150 2.031333 GCCTCTGTCAAGAAGCAAACAG 60.031 50.000 0.00 0.00 39.34 3.16
150 151 2.031333 CCTCTGTCAAGAAGCAAACAGC 60.031 50.000 0.00 0.00 46.19 4.40
163 164 4.644103 GCAAACAGCATACCATGAATCT 57.356 40.909 0.00 0.00 44.79 2.40
164 165 4.604976 GCAAACAGCATACCATGAATCTC 58.395 43.478 0.00 0.00 44.79 2.75
165 166 4.096833 GCAAACAGCATACCATGAATCTCA 59.903 41.667 0.00 0.00 44.79 3.27
166 167 5.221185 GCAAACAGCATACCATGAATCTCAT 60.221 40.000 0.00 0.00 44.79 2.90
167 168 6.436261 CAAACAGCATACCATGAATCTCATC 58.564 40.000 0.00 0.00 34.28 2.92
168 169 4.313282 ACAGCATACCATGAATCTCATCG 58.687 43.478 0.00 0.00 34.28 3.84
169 170 4.202295 ACAGCATACCATGAATCTCATCGT 60.202 41.667 0.00 0.00 34.28 3.73
170 171 4.151867 CAGCATACCATGAATCTCATCGTG 59.848 45.833 0.00 0.00 34.28 4.35
171 172 3.120408 GCATACCATGAATCTCATCGTGC 60.120 47.826 0.00 0.00 34.28 5.34
172 173 2.696989 ACCATGAATCTCATCGTGCA 57.303 45.000 0.00 0.00 34.28 4.57
173 174 2.989909 ACCATGAATCTCATCGTGCAA 58.010 42.857 0.00 0.00 34.28 4.08
174 175 3.548770 ACCATGAATCTCATCGTGCAAT 58.451 40.909 0.00 0.00 34.28 3.56
175 176 3.562973 ACCATGAATCTCATCGTGCAATC 59.437 43.478 0.00 0.00 34.28 2.67
176 177 3.562557 CCATGAATCTCATCGTGCAATCA 59.437 43.478 0.00 0.00 34.28 2.57
177 178 4.524749 CATGAATCTCATCGTGCAATCAC 58.475 43.478 0.00 0.00 34.28 3.06
186 187 1.226491 GTGCAATCACGGCATCTGC 60.226 57.895 0.00 0.00 44.11 4.26
200 201 3.961182 GCATCTGCCATTGTAATGTGAG 58.039 45.455 4.12 0.28 34.60 3.51
201 202 3.628942 GCATCTGCCATTGTAATGTGAGA 59.371 43.478 4.12 5.01 34.60 3.27
202 203 4.096833 GCATCTGCCATTGTAATGTGAGAA 59.903 41.667 4.12 0.00 34.60 2.87
203 204 5.393352 GCATCTGCCATTGTAATGTGAGAAA 60.393 40.000 4.12 0.00 34.60 2.52
204 205 5.627499 TCTGCCATTGTAATGTGAGAAAC 57.373 39.130 4.12 0.00 34.60 2.78
205 206 5.316167 TCTGCCATTGTAATGTGAGAAACT 58.684 37.500 4.12 0.00 34.60 2.66
206 207 5.769662 TCTGCCATTGTAATGTGAGAAACTT 59.230 36.000 4.12 0.00 34.60 2.66
207 208 6.265196 TCTGCCATTGTAATGTGAGAAACTTT 59.735 34.615 4.12 0.00 34.60 2.66
208 209 6.815089 TGCCATTGTAATGTGAGAAACTTTT 58.185 32.000 4.12 0.00 34.60 2.27
209 210 7.271511 TGCCATTGTAATGTGAGAAACTTTTT 58.728 30.769 4.12 0.00 34.60 1.94
240 241 2.990479 GGTGTACCCTGGCCTCAG 59.010 66.667 3.32 0.00 40.59 3.35
241 242 2.269241 GTGTACCCTGGCCTCAGC 59.731 66.667 3.32 0.00 39.61 4.26
242 243 2.203922 TGTACCCTGGCCTCAGCA 60.204 61.111 3.32 0.00 42.56 4.41
243 244 1.616327 TGTACCCTGGCCTCAGCAT 60.616 57.895 3.32 0.00 42.56 3.79
244 245 1.147153 GTACCCTGGCCTCAGCATC 59.853 63.158 3.32 0.00 42.56 3.91
245 246 1.306911 TACCCTGGCCTCAGCATCA 60.307 57.895 3.32 0.00 42.56 3.07
246 247 0.913934 TACCCTGGCCTCAGCATCAA 60.914 55.000 3.32 0.00 42.56 2.57
247 248 1.751927 CCCTGGCCTCAGCATCAAC 60.752 63.158 3.32 0.00 42.56 3.18
248 249 1.302285 CCTGGCCTCAGCATCAACT 59.698 57.895 3.32 0.00 42.56 3.16
249 250 1.030488 CCTGGCCTCAGCATCAACTG 61.030 60.000 3.32 0.00 42.56 3.16
250 251 0.035725 CTGGCCTCAGCATCAACTGA 60.036 55.000 3.32 0.00 44.32 3.41
251 252 0.622136 TGGCCTCAGCATCAACTGAT 59.378 50.000 3.32 0.00 45.34 2.90
261 262 2.937591 CATCAACTGATGCACACAACC 58.062 47.619 6.76 0.00 44.44 3.77
262 263 0.943673 TCAACTGATGCACACAACCG 59.056 50.000 0.00 0.00 0.00 4.44
263 264 0.661187 CAACTGATGCACACAACCGC 60.661 55.000 0.00 0.00 0.00 5.68
264 265 1.100463 AACTGATGCACACAACCGCA 61.100 50.000 0.00 0.00 43.45 5.69
268 269 3.495124 ATGCACACAACCGCATTTC 57.505 47.368 0.00 0.00 46.49 2.17
269 270 0.961019 ATGCACACAACCGCATTTCT 59.039 45.000 0.00 0.00 46.49 2.52
270 271 0.030504 TGCACACAACCGCATTTCTG 59.969 50.000 0.00 0.00 31.95 3.02
271 272 0.030638 GCACACAACCGCATTTCTGT 59.969 50.000 0.00 0.00 0.00 3.41
272 273 1.535860 GCACACAACCGCATTTCTGTT 60.536 47.619 0.00 0.00 0.00 3.16
273 274 2.287308 GCACACAACCGCATTTCTGTTA 60.287 45.455 0.00 0.00 0.00 2.41
274 275 3.296628 CACACAACCGCATTTCTGTTAC 58.703 45.455 0.00 0.00 0.00 2.50
275 276 3.003275 CACACAACCGCATTTCTGTTACT 59.997 43.478 0.00 0.00 0.00 2.24
276 277 3.003275 ACACAACCGCATTTCTGTTACTG 59.997 43.478 0.00 0.00 0.00 2.74
277 278 3.003275 CACAACCGCATTTCTGTTACTGT 59.997 43.478 0.00 0.00 0.00 3.55
278 279 4.212425 CACAACCGCATTTCTGTTACTGTA 59.788 41.667 0.00 0.00 0.00 2.74
279 280 5.001232 ACAACCGCATTTCTGTTACTGTAT 58.999 37.500 0.00 0.00 0.00 2.29
280 281 5.106712 ACAACCGCATTTCTGTTACTGTATG 60.107 40.000 0.00 0.00 0.00 2.39
281 282 4.575885 ACCGCATTTCTGTTACTGTATGT 58.424 39.130 0.00 0.00 0.00 2.29
282 283 5.726397 ACCGCATTTCTGTTACTGTATGTA 58.274 37.500 0.00 0.00 0.00 2.29
283 284 6.346096 ACCGCATTTCTGTTACTGTATGTAT 58.654 36.000 0.00 0.00 0.00 2.29
284 285 6.479001 ACCGCATTTCTGTTACTGTATGTATC 59.521 38.462 0.00 0.00 0.00 2.24
285 286 6.701841 CCGCATTTCTGTTACTGTATGTATCT 59.298 38.462 0.00 0.00 0.00 1.98
286 287 7.096023 CCGCATTTCTGTTACTGTATGTATCTC 60.096 40.741 0.00 0.00 0.00 2.75
287 288 7.357613 CGCATTTCTGTTACTGTATGTATCTCG 60.358 40.741 0.00 0.00 0.00 4.04
288 289 7.096023 GCATTTCTGTTACTGTATGTATCTCGG 60.096 40.741 0.00 0.00 0.00 4.63
289 290 7.400599 TTTCTGTTACTGTATGTATCTCGGT 57.599 36.000 0.00 0.00 0.00 4.69
290 291 7.400599 TTCTGTTACTGTATGTATCTCGGTT 57.599 36.000 0.00 0.00 0.00 4.44
291 292 6.792326 TCTGTTACTGTATGTATCTCGGTTG 58.208 40.000 0.00 0.00 0.00 3.77
292 293 6.376299 TCTGTTACTGTATGTATCTCGGTTGT 59.624 38.462 0.00 0.00 0.00 3.32
293 294 6.927416 TGTTACTGTATGTATCTCGGTTGTT 58.073 36.000 0.00 0.00 0.00 2.83
294 295 8.054152 TGTTACTGTATGTATCTCGGTTGTTA 57.946 34.615 0.00 0.00 0.00 2.41
295 296 8.689061 TGTTACTGTATGTATCTCGGTTGTTAT 58.311 33.333 0.00 0.00 0.00 1.89
308 309 8.361169 TCTCGGTTGTTATATATCATCATCCA 57.639 34.615 0.00 0.00 0.00 3.41
309 310 8.981659 TCTCGGTTGTTATATATCATCATCCAT 58.018 33.333 0.00 0.00 0.00 3.41
322 323 7.803279 ATCATCATCCATATCCATTCAATCG 57.197 36.000 0.00 0.00 0.00 3.34
323 324 6.117488 TCATCATCCATATCCATTCAATCGG 58.883 40.000 0.00 0.00 0.00 4.18
324 325 4.264253 TCATCCATATCCATTCAATCGGC 58.736 43.478 0.00 0.00 0.00 5.54
325 326 4.019051 TCATCCATATCCATTCAATCGGCT 60.019 41.667 0.00 0.00 0.00 5.52
326 327 3.678289 TCCATATCCATTCAATCGGCTG 58.322 45.455 0.00 0.00 0.00 4.85
327 328 2.751259 CCATATCCATTCAATCGGCTGG 59.249 50.000 0.00 0.00 0.00 4.85
328 329 1.896220 TATCCATTCAATCGGCTGGC 58.104 50.000 0.00 0.00 0.00 4.85
329 330 0.184451 ATCCATTCAATCGGCTGGCT 59.816 50.000 0.00 0.00 0.00 4.75
330 331 0.034186 TCCATTCAATCGGCTGGCTT 60.034 50.000 0.00 0.00 0.00 4.35
331 332 1.211703 TCCATTCAATCGGCTGGCTTA 59.788 47.619 0.00 0.00 0.00 3.09
332 333 2.023673 CCATTCAATCGGCTGGCTTAA 58.976 47.619 0.00 0.00 0.00 1.85
333 334 2.624838 CCATTCAATCGGCTGGCTTAAT 59.375 45.455 0.00 0.00 0.00 1.40
334 335 3.304928 CCATTCAATCGGCTGGCTTAATC 60.305 47.826 0.00 0.00 0.00 1.75
335 336 3.281727 TTCAATCGGCTGGCTTAATCT 57.718 42.857 0.00 0.00 0.00 2.40
336 337 3.281727 TCAATCGGCTGGCTTAATCTT 57.718 42.857 0.00 0.00 0.00 2.40
337 338 4.415881 TCAATCGGCTGGCTTAATCTTA 57.584 40.909 0.00 0.00 0.00 2.10
338 339 4.973168 TCAATCGGCTGGCTTAATCTTAT 58.027 39.130 0.00 0.00 0.00 1.73
339 340 4.756642 TCAATCGGCTGGCTTAATCTTATG 59.243 41.667 0.00 0.00 0.00 1.90
340 341 3.126001 TCGGCTGGCTTAATCTTATGG 57.874 47.619 0.00 0.00 0.00 2.74
341 342 2.438021 TCGGCTGGCTTAATCTTATGGT 59.562 45.455 0.00 0.00 0.00 3.55
342 343 3.118038 TCGGCTGGCTTAATCTTATGGTT 60.118 43.478 0.00 0.00 0.00 3.67
343 344 3.251004 CGGCTGGCTTAATCTTATGGTTC 59.749 47.826 0.00 0.00 0.00 3.62
344 345 4.464947 GGCTGGCTTAATCTTATGGTTCT 58.535 43.478 0.00 0.00 0.00 3.01
345 346 4.276926 GGCTGGCTTAATCTTATGGTTCTG 59.723 45.833 0.00 0.00 0.00 3.02
346 347 4.261363 GCTGGCTTAATCTTATGGTTCTGC 60.261 45.833 0.00 0.00 0.00 4.26
347 348 4.207165 TGGCTTAATCTTATGGTTCTGCC 58.793 43.478 9.46 9.46 37.38 4.85
348 349 4.079787 TGGCTTAATCTTATGGTTCTGCCT 60.080 41.667 14.50 0.00 37.69 4.75
349 350 4.276926 GGCTTAATCTTATGGTTCTGCCTG 59.723 45.833 9.24 0.00 38.35 4.85
350 351 4.261363 GCTTAATCTTATGGTTCTGCCTGC 60.261 45.833 0.00 0.00 38.35 4.85
351 352 1.959042 ATCTTATGGTTCTGCCTGCG 58.041 50.000 0.00 0.00 38.35 5.18
352 353 0.613260 TCTTATGGTTCTGCCTGCGT 59.387 50.000 0.00 0.00 38.35 5.24
353 354 1.009829 CTTATGGTTCTGCCTGCGTC 58.990 55.000 0.00 0.00 38.35 5.19
354 355 0.323302 TTATGGTTCTGCCTGCGTCA 59.677 50.000 0.00 0.00 38.35 4.35
355 356 0.541392 TATGGTTCTGCCTGCGTCAT 59.459 50.000 0.00 0.00 38.35 3.06
356 357 1.028330 ATGGTTCTGCCTGCGTCATG 61.028 55.000 0.00 0.00 38.35 3.07
357 358 2.482374 GTTCTGCCTGCGTCATGC 59.518 61.111 0.00 1.41 46.70 4.06
358 359 2.747460 TTCTGCCTGCGTCATGCC 60.747 61.111 5.10 0.00 45.60 4.40
359 360 3.549900 TTCTGCCTGCGTCATGCCA 62.550 57.895 5.10 0.00 45.60 4.92
360 361 3.807538 CTGCCTGCGTCATGCCAC 61.808 66.667 5.10 0.00 45.60 5.01
361 362 4.639906 TGCCTGCGTCATGCCACA 62.640 61.111 5.10 0.00 45.60 4.17
362 363 3.136123 GCCTGCGTCATGCCACAT 61.136 61.111 0.00 0.00 45.60 3.21
363 364 2.795973 CCTGCGTCATGCCACATG 59.204 61.111 1.05 1.05 45.60 3.21
364 365 2.101575 CTGCGTCATGCCACATGC 59.898 61.111 2.65 0.00 45.60 4.06
365 366 3.728267 CTGCGTCATGCCACATGCG 62.728 63.158 15.26 15.26 45.60 4.73
366 367 3.498834 GCGTCATGCCACATGCGA 61.499 61.111 20.48 0.00 45.60 5.10
367 368 2.400798 CGTCATGCCACATGCGAC 59.599 61.111 14.76 4.61 45.60 5.19
368 369 2.389809 CGTCATGCCACATGCGACA 61.390 57.895 14.76 0.00 45.60 4.35
369 370 1.135315 GTCATGCCACATGCGACAC 59.865 57.895 2.65 0.00 45.60 3.67
370 371 1.302351 TCATGCCACATGCGACACA 60.302 52.632 2.65 0.00 45.60 3.72
371 372 0.888285 TCATGCCACATGCGACACAA 60.888 50.000 2.65 0.00 45.60 3.33
372 373 0.039346 CATGCCACATGCGACACAAA 60.039 50.000 0.00 0.00 45.60 2.83
373 374 0.889994 ATGCCACATGCGACACAAAT 59.110 45.000 0.00 0.00 45.60 2.32
374 375 0.240678 TGCCACATGCGACACAAATC 59.759 50.000 0.00 0.00 45.60 2.17
375 376 0.523072 GCCACATGCGACACAAATCT 59.477 50.000 0.00 0.00 0.00 2.40
376 377 1.737236 GCCACATGCGACACAAATCTA 59.263 47.619 0.00 0.00 0.00 1.98
377 378 2.355756 GCCACATGCGACACAAATCTAT 59.644 45.455 0.00 0.00 0.00 1.98
378 379 3.789791 GCCACATGCGACACAAATCTATG 60.790 47.826 0.00 0.00 0.00 2.23
379 380 3.374988 CCACATGCGACACAAATCTATGT 59.625 43.478 0.00 0.00 0.00 2.29
380 381 4.570369 CCACATGCGACACAAATCTATGTA 59.430 41.667 0.00 0.00 30.84 2.29
381 382 5.277011 CCACATGCGACACAAATCTATGTAG 60.277 44.000 0.00 0.00 30.84 2.74
382 383 5.291858 CACATGCGACACAAATCTATGTAGT 59.708 40.000 0.00 0.00 30.84 2.73
383 384 6.475402 CACATGCGACACAAATCTATGTAGTA 59.525 38.462 0.00 0.00 30.84 1.82
384 385 6.475727 ACATGCGACACAAATCTATGTAGTAC 59.524 38.462 0.00 0.00 30.84 2.73
385 386 5.032220 TGCGACACAAATCTATGTAGTACG 58.968 41.667 0.00 0.00 30.84 3.67
386 387 5.032863 GCGACACAAATCTATGTAGTACGT 58.967 41.667 0.00 0.00 30.84 3.57
387 388 6.183360 TGCGACACAAATCTATGTAGTACGTA 60.183 38.462 2.29 2.29 30.84 3.57
388 389 6.688385 GCGACACAAATCTATGTAGTACGTAA 59.312 38.462 0.00 0.00 30.84 3.18
389 390 7.218773 GCGACACAAATCTATGTAGTACGTAAA 59.781 37.037 0.00 0.00 30.84 2.01
390 391 9.229784 CGACACAAATCTATGTAGTACGTAAAT 57.770 33.333 0.00 0.00 30.84 1.40
399 400 9.070179 TCTATGTAGTACGTAAATAGATTGGCA 57.930 33.333 0.00 0.00 34.24 4.92
400 401 9.856488 CTATGTAGTACGTAAATAGATTGGCAT 57.144 33.333 0.00 0.00 32.31 4.40
401 402 8.758633 ATGTAGTACGTAAATAGATTGGCATC 57.241 34.615 0.00 0.00 0.00 3.91
402 403 7.718525 TGTAGTACGTAAATAGATTGGCATCA 58.281 34.615 0.00 0.00 0.00 3.07
403 404 7.865889 TGTAGTACGTAAATAGATTGGCATCAG 59.134 37.037 0.00 0.00 0.00 2.90
404 405 6.223852 AGTACGTAAATAGATTGGCATCAGG 58.776 40.000 0.00 0.00 0.00 3.86
405 406 4.389374 ACGTAAATAGATTGGCATCAGGG 58.611 43.478 0.00 0.00 0.00 4.45
406 407 3.189287 CGTAAATAGATTGGCATCAGGGC 59.811 47.826 0.00 0.00 43.73 5.19
415 416 4.161295 CATCAGGGCGAGGGCGAA 62.161 66.667 0.00 0.00 41.24 4.70
416 417 4.162690 ATCAGGGCGAGGGCGAAC 62.163 66.667 0.00 0.00 41.24 3.95
418 419 4.394712 CAGGGCGAGGGCGAACTT 62.395 66.667 0.00 0.00 41.24 2.66
419 420 2.682494 AGGGCGAGGGCGAACTTA 60.682 61.111 0.00 0.00 41.24 2.24
420 421 2.064581 AGGGCGAGGGCGAACTTAT 61.065 57.895 0.00 0.00 41.24 1.73
421 422 1.594564 GGGCGAGGGCGAACTTATC 60.595 63.158 0.00 0.00 41.24 1.75
422 423 1.442148 GGCGAGGGCGAACTTATCT 59.558 57.895 0.00 0.00 41.24 1.98
423 424 0.672342 GGCGAGGGCGAACTTATCTA 59.328 55.000 0.00 0.00 41.24 1.98
424 425 1.272769 GGCGAGGGCGAACTTATCTAT 59.727 52.381 0.00 0.00 41.24 1.98
425 426 2.490903 GGCGAGGGCGAACTTATCTATA 59.509 50.000 0.00 0.00 41.24 1.31
426 427 3.130693 GGCGAGGGCGAACTTATCTATAT 59.869 47.826 0.00 0.00 41.24 0.86
427 428 4.381718 GGCGAGGGCGAACTTATCTATATT 60.382 45.833 0.00 0.00 41.24 1.28
428 429 5.169295 GCGAGGGCGAACTTATCTATATTT 58.831 41.667 0.00 0.00 40.82 1.40
429 430 5.288952 GCGAGGGCGAACTTATCTATATTTC 59.711 44.000 0.00 0.00 40.82 2.17
430 431 6.622549 CGAGGGCGAACTTATCTATATTTCT 58.377 40.000 0.00 0.00 40.82 2.52
431 432 7.091443 CGAGGGCGAACTTATCTATATTTCTT 58.909 38.462 0.00 0.00 40.82 2.52
432 433 7.599245 CGAGGGCGAACTTATCTATATTTCTTT 59.401 37.037 0.00 0.00 40.82 2.52
433 434 9.924650 GAGGGCGAACTTATCTATATTTCTTTA 57.075 33.333 0.00 0.00 0.00 1.85
454 455 9.842775 TCTTTAAGAATTGATGATATGCAGACT 57.157 29.630 0.00 0.00 0.00 3.24
460 461 9.842775 AGAATTGATGATATGCAGACTAAAAGA 57.157 29.630 0.00 0.00 0.00 2.52
472 473 8.862325 TGCAGACTAAAAGAAAAATGATAGGA 57.138 30.769 0.00 0.00 0.00 2.94
473 474 9.295825 TGCAGACTAAAAGAAAAATGATAGGAA 57.704 29.630 0.00 0.00 0.00 3.36
587 588 8.904099 AGAACAAACTGTATATATTAGTGGGC 57.096 34.615 0.00 0.00 0.00 5.36
588 589 7.937394 AGAACAAACTGTATATATTAGTGGGCC 59.063 37.037 0.00 0.00 0.00 5.80
589 590 6.228258 ACAAACTGTATATATTAGTGGGCCG 58.772 40.000 0.00 0.00 0.00 6.13
590 591 4.467198 ACTGTATATATTAGTGGGCCGC 57.533 45.455 9.64 9.64 0.00 6.53
591 592 3.119245 ACTGTATATATTAGTGGGCCGCG 60.119 47.826 12.16 0.00 0.00 6.46
592 593 2.199236 GTATATATTAGTGGGCCGCGC 58.801 52.381 12.16 0.00 0.00 6.86
593 594 0.611200 ATATATTAGTGGGCCGCGCA 59.389 50.000 12.16 5.94 0.00 6.09
594 595 0.393448 TATATTAGTGGGCCGCGCAA 59.607 50.000 12.27 10.44 0.00 4.85
595 596 0.464735 ATATTAGTGGGCCGCGCAAA 60.465 50.000 12.27 8.18 0.00 3.68
596 597 0.677098 TATTAGTGGGCCGCGCAAAA 60.677 50.000 12.27 9.96 0.00 2.44
597 598 1.319614 ATTAGTGGGCCGCGCAAAAT 61.320 50.000 12.27 11.74 0.00 1.82
598 599 0.677098 TTAGTGGGCCGCGCAAAATA 60.677 50.000 12.27 3.20 0.00 1.40
599 600 1.370587 TAGTGGGCCGCGCAAAATAC 61.371 55.000 12.27 0.00 0.00 1.89
600 601 2.673341 TGGGCCGCGCAAAATACA 60.673 55.556 8.75 0.00 0.00 2.29
601 602 2.268802 TGGGCCGCGCAAAATACAA 61.269 52.632 8.75 0.00 0.00 2.41
602 603 1.140804 GGGCCGCGCAAAATACAAT 59.859 52.632 8.75 0.00 0.00 2.71
603 604 0.869880 GGGCCGCGCAAAATACAATC 60.870 55.000 8.75 0.00 0.00 2.67
604 605 0.869880 GGCCGCGCAAAATACAATCC 60.870 55.000 8.75 0.00 0.00 3.01
605 606 0.179150 GCCGCGCAAAATACAATCCA 60.179 50.000 8.75 0.00 0.00 3.41
606 607 1.734047 GCCGCGCAAAATACAATCCAA 60.734 47.619 8.75 0.00 0.00 3.53
607 608 2.184448 CCGCGCAAAATACAATCCAAG 58.816 47.619 8.75 0.00 0.00 3.61
608 609 2.159448 CCGCGCAAAATACAATCCAAGA 60.159 45.455 8.75 0.00 0.00 3.02
609 610 3.100817 CGCGCAAAATACAATCCAAGAG 58.899 45.455 8.75 0.00 0.00 2.85
610 611 3.181511 CGCGCAAAATACAATCCAAGAGA 60.182 43.478 8.75 0.00 0.00 3.10
611 612 4.671508 CGCGCAAAATACAATCCAAGAGAA 60.672 41.667 8.75 0.00 0.00 2.87
612 613 5.160641 GCGCAAAATACAATCCAAGAGAAA 58.839 37.500 0.30 0.00 0.00 2.52
613 614 5.060940 GCGCAAAATACAATCCAAGAGAAAC 59.939 40.000 0.30 0.00 0.00 2.78
614 615 5.283717 CGCAAAATACAATCCAAGAGAAACG 59.716 40.000 0.00 0.00 0.00 3.60
615 616 6.149633 GCAAAATACAATCCAAGAGAAACGT 58.850 36.000 0.00 0.00 0.00 3.99
616 617 6.640907 GCAAAATACAATCCAAGAGAAACGTT 59.359 34.615 0.00 0.00 0.00 3.99
617 618 7.169140 GCAAAATACAATCCAAGAGAAACGTTT 59.831 33.333 14.57 14.57 0.00 3.60
618 619 8.690840 CAAAATACAATCCAAGAGAAACGTTTC 58.309 33.333 29.36 29.36 37.45 2.78
619 620 7.504924 AATACAATCCAAGAGAAACGTTTCA 57.495 32.000 35.29 18.82 39.61 2.69
620 621 5.424121 ACAATCCAAGAGAAACGTTTCAG 57.576 39.130 35.29 23.20 39.61 3.02
621 622 4.222114 CAATCCAAGAGAAACGTTTCAGC 58.778 43.478 35.29 27.19 39.61 4.26
622 623 2.218603 TCCAAGAGAAACGTTTCAGCC 58.781 47.619 35.29 24.79 39.61 4.85
623 624 2.158813 TCCAAGAGAAACGTTTCAGCCT 60.159 45.455 35.29 26.23 39.61 4.58
624 625 2.031682 CCAAGAGAAACGTTTCAGCCTG 60.032 50.000 35.29 25.76 39.61 4.85
625 626 2.872245 CAAGAGAAACGTTTCAGCCTGA 59.128 45.455 35.29 0.00 39.61 3.86
626 627 3.194005 AGAGAAACGTTTCAGCCTGAA 57.806 42.857 35.29 2.24 39.61 3.02
627 628 3.134458 AGAGAAACGTTTCAGCCTGAAG 58.866 45.455 35.29 0.00 37.70 3.02
628 629 1.604278 AGAAACGTTTCAGCCTGAAGC 59.396 47.619 35.29 10.90 37.70 3.86
629 630 3.004849 AGAAACGTTTCAGCCTGAAGCA 61.005 45.455 35.29 0.00 37.43 3.91
630 631 5.086957 AGAAACGTTTCAGCCTGAAGCAC 62.087 47.826 35.29 10.05 37.43 4.40
639 640 2.602257 GCCTGAAGCACCTTTTTGTT 57.398 45.000 0.00 0.00 42.97 2.83
640 641 2.204237 GCCTGAAGCACCTTTTTGTTG 58.796 47.619 0.00 0.00 42.97 3.33
769 2897 1.293963 GGGTACGTGGCGGACTTTTC 61.294 60.000 0.00 0.00 40.97 2.29
1244 3428 8.884323 TCTATATGTCTATGCCCTCTGAATTTT 58.116 33.333 0.00 0.00 0.00 1.82
1405 3595 2.237143 TCATCAGAGAACGCCCTTGAAT 59.763 45.455 0.00 0.00 0.00 2.57
1444 3636 1.092921 TGTGTGTGTCGCCCAGTTTC 61.093 55.000 0.00 0.00 0.00 2.78
1673 3889 4.653801 AGAAATTGTAGGGTGCCACTTTTT 59.346 37.500 0.00 0.00 0.00 1.94
1674 3890 4.335400 AATTGTAGGGTGCCACTTTTTG 57.665 40.909 0.00 0.00 0.00 2.44
1675 3891 2.445682 TGTAGGGTGCCACTTTTTGT 57.554 45.000 0.00 0.00 0.00 2.83
1718 3935 8.823220 ATGGCTTTTAGTTAGTAATGGATGTT 57.177 30.769 0.00 0.00 0.00 2.71
1738 3958 9.750125 GGATGTTATTTGTTTTTCAGAGAGTTT 57.250 29.630 0.00 0.00 0.00 2.66
1801 4021 4.839668 GTGTTATGCACCAACTAACCAA 57.160 40.909 12.74 0.00 42.10 3.67
1912 4137 9.265901 GTTTAGATATCTGTGCTCATACATGTT 57.734 33.333 15.79 0.00 0.00 2.71
1926 4151 9.494271 GCTCATACATGTTCTTTTGGATCTATA 57.506 33.333 2.30 0.00 0.00 1.31
2001 4230 9.436957 CAGTATGTAAGTCTGTTTGGTTATCTT 57.563 33.333 0.00 0.00 0.00 2.40
2024 4253 1.939934 CCTGAACGAACAACTTGCTCA 59.060 47.619 0.00 0.00 0.00 4.26
2121 4404 6.270815 CCCTGATGATTGTCAGCTTAAAATG 58.729 40.000 0.00 0.00 43.36 2.32
2266 4550 4.761739 CCAGTATGTTTGATGTCCAGTGTT 59.238 41.667 0.00 0.00 0.00 3.32
2304 4588 0.521735 GGCTTTCGGAATGACCACAC 59.478 55.000 7.72 0.00 38.90 3.82
2339 4623 6.829298 TCTTGTCCGATGACTAGAGAGTTATT 59.171 38.462 0.00 0.00 44.71 1.40
2421 4705 7.062956 GTCGTATGTTTGATCATGTTGTCACTA 59.937 37.037 0.00 0.00 0.00 2.74
2473 4814 2.307980 CCATGACCATGATCTAGCCCAT 59.692 50.000 11.28 0.00 41.20 4.00
2568 4912 3.640407 GCTGGGTGTGGAGCTCCA 61.640 66.667 32.00 32.00 45.30 3.86
2587 4931 0.831307 ACTCCCACCGGATAGCTTTC 59.169 55.000 9.46 0.00 37.60 2.62
2600 4944 4.092091 GGATAGCTTTCACGTTCTGTTCAG 59.908 45.833 6.50 0.00 0.00 3.02
2778 5125 4.202212 TGGACGTCTGATGTTCTTTCAAGA 60.202 41.667 16.46 0.00 0.00 3.02
2893 5242 7.488187 ACGATCCTGATAATGAAATGTCAAG 57.512 36.000 0.00 0.00 37.30 3.02
2910 5259 1.181741 AAGCAGCGACAGTCTGGAGA 61.182 55.000 4.53 0.00 32.41 3.71
3026 5383 9.856488 GTAACAACTCCTTTCTTTTCTCTTTTT 57.144 29.630 0.00 0.00 0.00 1.94
3043 5400 6.808212 TCTCTTTTTCTGTTTTGTTTGCTCTG 59.192 34.615 0.00 0.00 0.00 3.35
3075 5432 1.956869 TCCAGGAGGAAGAAGATGCA 58.043 50.000 0.00 0.00 42.23 3.96
3185 5546 5.415221 GTTTCTGTTTGTTGGTTTCCATCA 58.585 37.500 0.00 0.00 31.53 3.07
3527 5895 3.309296 TGAACTCCCTTCTCACTTCACT 58.691 45.455 0.00 0.00 0.00 3.41
3630 5998 2.174639 TCTGTCCATCTTGTGTTGGGTT 59.825 45.455 0.00 0.00 34.61 4.11
3779 6147 2.832129 TCTTAGCGATGAGGACACCTTT 59.168 45.455 0.00 0.00 31.76 3.11
3862 6230 2.500504 ACACGGACTTCCTATTCCTTCC 59.499 50.000 0.00 0.00 0.00 3.46
3983 6351 1.270305 GGCAGGAAACCAAAAGCCTTC 60.270 52.381 0.00 0.00 39.02 3.46
3986 6354 2.558359 CAGGAAACCAAAAGCCTTCGAT 59.442 45.455 0.00 0.00 0.00 3.59
3992 6361 2.558359 ACCAAAAGCCTTCGATTTCTGG 59.442 45.455 0.00 0.00 0.00 3.86
4148 6524 8.911918 TTAGATAAGCTTGACTTTGGTGTAAA 57.088 30.769 9.86 0.00 39.97 2.01
4165 6541 2.337879 AAAGGTGGTCGAGCAAGGCA 62.338 55.000 20.46 0.00 0.00 4.75
4340 6717 5.550403 AGTTGAAAAGGGAGGTAGGAACATA 59.450 40.000 0.00 0.00 0.00 2.29
4421 6805 6.122850 TCTGCATCAATCATTTTTCTACGG 57.877 37.500 0.00 0.00 0.00 4.02
4447 6831 4.149922 CAGCATCTGTTTGCAACTGAAATG 59.850 41.667 0.00 1.20 45.23 2.32
4455 6839 0.109597 GCAACTGAAATGGGTGCTCG 60.110 55.000 0.00 0.00 0.00 5.03
4690 7089 3.747099 GCACACTGCGACAAGATAAAT 57.253 42.857 0.00 0.00 31.71 1.40
4756 7155 5.071788 TGTGTTGAAGTTTCTATCTGGACCT 59.928 40.000 0.00 0.00 0.00 3.85
4776 7175 6.352222 GGACCTGGAGTATCATCTCTTTTCAA 60.352 42.308 0.00 0.00 36.25 2.69
5118 7523 2.738846 AGCACGTTAAGAGCAACATCAG 59.261 45.455 0.00 0.00 38.98 2.90
5119 7524 2.480419 GCACGTTAAGAGCAACATCAGT 59.520 45.455 0.00 0.00 36.42 3.41
5307 7714 7.470009 GCACTTTTTCTCCATGTTCCTCTTTTA 60.470 37.037 0.00 0.00 0.00 1.52
5308 7715 8.579863 CACTTTTTCTCCATGTTCCTCTTTTAT 58.420 33.333 0.00 0.00 0.00 1.40
5310 7717 9.631452 CTTTTTCTCCATGTTCCTCTTTTATTC 57.369 33.333 0.00 0.00 0.00 1.75
5311 7718 7.703058 TTTCTCCATGTTCCTCTTTTATTCC 57.297 36.000 0.00 0.00 0.00 3.01
5312 7719 5.755849 TCTCCATGTTCCTCTTTTATTCCC 58.244 41.667 0.00 0.00 0.00 3.97
5313 7720 4.867086 TCCATGTTCCTCTTTTATTCCCC 58.133 43.478 0.00 0.00 0.00 4.81
5314 7721 3.960755 CCATGTTCCTCTTTTATTCCCCC 59.039 47.826 0.00 0.00 0.00 5.40
5346 7753 4.695217 TCTGTGTTCTTTTCGTTGCTTT 57.305 36.364 0.00 0.00 0.00 3.51
5347 7754 5.804692 TCTGTGTTCTTTTCGTTGCTTTA 57.195 34.783 0.00 0.00 0.00 1.85
5348 7755 5.806286 TCTGTGTTCTTTTCGTTGCTTTAG 58.194 37.500 0.00 0.00 0.00 1.85
5349 7756 5.353123 TCTGTGTTCTTTTCGTTGCTTTAGT 59.647 36.000 0.00 0.00 0.00 2.24
5350 7757 6.535865 TCTGTGTTCTTTTCGTTGCTTTAGTA 59.464 34.615 0.00 0.00 0.00 1.82
5351 7758 7.064847 TCTGTGTTCTTTTCGTTGCTTTAGTAA 59.935 33.333 0.00 0.00 0.00 2.24
5373 7780 9.095065 AGTAATTAGTAGTGGCTTTTTACATCG 57.905 33.333 0.00 0.00 0.00 3.84
5535 8068 9.057089 TCAAGTCTTAATTTTCTCTTCTGTTCC 57.943 33.333 0.00 0.00 0.00 3.62
5539 8072 9.885934 GTCTTAATTTTCTCTTCTGTTCCTTTC 57.114 33.333 0.00 0.00 0.00 2.62
5673 8206 2.262423 AGGAGCGCAACTCTTTTCTT 57.738 45.000 11.47 0.00 45.48 2.52
5814 8347 6.664816 AGATGATTAACCACATGTCACCAATT 59.335 34.615 0.00 0.00 0.00 2.32
6230 8779 3.086282 TCTACACGCTCACCATAGTTCA 58.914 45.455 0.00 0.00 0.00 3.18
6261 8810 4.453751 ACCAATCAGCAAGCAACATTTTT 58.546 34.783 0.00 0.00 0.00 1.94
6349 8929 4.261405 CCGTTTTGGCTCAGTTTTACATGA 60.261 41.667 0.00 0.00 0.00 3.07
6511 9099 8.692710 TCTTGTATACAACAATCTAATCGGACT 58.307 33.333 14.35 0.00 46.81 3.85
6528 9116 3.181524 CGGACTAATTGCGAAACGTCAAT 60.182 43.478 0.00 0.00 42.80 2.57
6539 9127 3.670203 GAAACGTCAATGCCAATCTACG 58.330 45.455 0.00 0.00 36.48 3.51
6642 9230 5.955961 TCTCAATCAAGGTGGACATGATA 57.044 39.130 0.00 0.00 33.60 2.15
6976 10419 6.830912 ACTTGAATAGCTCATGGTAAGCATA 58.169 36.000 7.54 0.00 42.35 3.14
6992 10435 6.016777 GGTAAGCATAGCAGCATACAAAATCT 60.017 38.462 11.43 0.00 39.67 2.40
6998 10441 8.909671 GCATAGCAGCATACAAAATCTATTTTC 58.090 33.333 0.00 0.00 37.86 2.29
7153 10601 0.736053 TGTGGCGAACAAACAGGAAC 59.264 50.000 0.00 0.00 35.24 3.62
7275 10723 0.601558 CGGAAGTTCTTCGAGGACCA 59.398 55.000 0.00 0.00 0.00 4.02
7500 10953 8.814038 ATAAACTAAGATCAATTGCCACTTCT 57.186 30.769 0.00 0.00 0.00 2.85
7616 11081 7.426410 TGTGTTCTATTTTTGCCGTTTTGATA 58.574 30.769 0.00 0.00 0.00 2.15
7647 11114 9.781834 TTTGTTCTAACTCTATTTTTGTGTGTG 57.218 29.630 0.00 0.00 0.00 3.82
7649 11116 8.952278 TGTTCTAACTCTATTTTTGTGTGTGTT 58.048 29.630 0.00 0.00 0.00 3.32
7650 11117 9.783256 GTTCTAACTCTATTTTTGTGTGTGTTT 57.217 29.630 0.00 0.00 0.00 2.83
7852 11322 8.472683 TTTTGTTTTTGTCCATCACACTTTAG 57.527 30.769 0.00 0.00 33.41 1.85
7853 11323 5.587289 TGTTTTTGTCCATCACACTTTAGC 58.413 37.500 0.00 0.00 33.41 3.09
7855 11325 6.183360 TGTTTTTGTCCATCACACTTTAGCAT 60.183 34.615 0.00 0.00 33.41 3.79
7856 11326 5.627499 TTTGTCCATCACACTTTAGCATC 57.373 39.130 0.00 0.00 33.41 3.91
7858 11328 4.002982 TGTCCATCACACTTTAGCATCAC 58.997 43.478 0.00 0.00 0.00 3.06
7860 11330 4.637534 GTCCATCACACTTTAGCATCACAT 59.362 41.667 0.00 0.00 0.00 3.21
7861 11331 4.877823 TCCATCACACTTTAGCATCACATC 59.122 41.667 0.00 0.00 0.00 3.06
7862 11332 4.637091 CCATCACACTTTAGCATCACATCA 59.363 41.667 0.00 0.00 0.00 3.07
7977 11455 6.690530 TCATCAAGTTGTGGGAAATCATTTC 58.309 36.000 0.97 0.97 38.94 2.17
8084 11562 3.826157 TCCCACCTGCTCTGTTTTTATTG 59.174 43.478 0.00 0.00 0.00 1.90
8271 11752 7.759433 CAGTACATGAACCAACTTTTCTTTTGT 59.241 33.333 0.00 0.00 0.00 2.83
8555 12547 6.767456 TCAAGAGAAGAAGAGAGCTCATTTT 58.233 36.000 17.77 6.79 0.00 1.82
8601 12595 9.020731 TCTAGATCATTTTGTGTAGTGTAGTGA 57.979 33.333 0.00 0.00 0.00 3.41
8608 12602 8.720562 CATTTTGTGTAGTGTAGTGATCAATGA 58.279 33.333 5.80 0.00 0.00 2.57
8849 12845 9.726438 CTCTATTCTTTCTTTTAGTTTCCCTCA 57.274 33.333 0.00 0.00 0.00 3.86
8872 13173 9.243637 CTCAGTCTTATTTAGTATGTCTTCAGC 57.756 37.037 0.00 0.00 0.00 4.26
8919 13220 5.664294 TTAATCTTGCAGTCGGTACCTAA 57.336 39.130 10.90 0.00 0.00 2.69
8938 13239 6.852664 ACCTAAAAGGAATAAATTGTGCTCG 58.147 36.000 0.00 0.00 37.67 5.03
8971 13272 3.632604 CCCATTCGCTTAGTCACTCTCTA 59.367 47.826 0.00 0.00 0.00 2.43
9188 13919 6.238759 CGTTGATCTCTTTGTTCTTTTCCCTT 60.239 38.462 0.00 0.00 0.00 3.95
9197 13928 6.976934 TTGTTCTTTTCCCTTCTAGCATTT 57.023 33.333 0.00 0.00 0.00 2.32
9369 14103 3.690460 CTTGGCTGGTTTGTCTTCCTAT 58.310 45.455 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.962679 TCAACCAATTGAAGTAGTAGTTGTTTT 58.037 29.630 7.12 0.00 41.99 2.43
10 11 8.403236 GTCAACCAATTGAAGTAGTAGTTGTTT 58.597 33.333 7.12 0.00 46.40 2.83
11 12 7.773690 AGTCAACCAATTGAAGTAGTAGTTGTT 59.226 33.333 7.12 0.00 46.40 2.83
12 13 7.280356 AGTCAACCAATTGAAGTAGTAGTTGT 58.720 34.615 7.12 0.00 46.40 3.32
13 14 7.730364 AGTCAACCAATTGAAGTAGTAGTTG 57.270 36.000 7.12 9.90 46.40 3.16
14 15 7.773690 ACAAGTCAACCAATTGAAGTAGTAGTT 59.226 33.333 7.12 0.00 46.40 2.24
15 16 7.280356 ACAAGTCAACCAATTGAAGTAGTAGT 58.720 34.615 7.12 0.00 46.40 2.73
16 17 7.730364 ACAAGTCAACCAATTGAAGTAGTAG 57.270 36.000 7.12 0.00 46.40 2.57
17 18 9.787435 ATTACAAGTCAACCAATTGAAGTAGTA 57.213 29.630 7.12 0.00 46.40 1.82
18 19 8.691661 ATTACAAGTCAACCAATTGAAGTAGT 57.308 30.769 7.12 0.00 46.40 2.73
19 20 8.783093 TGATTACAAGTCAACCAATTGAAGTAG 58.217 33.333 7.12 0.00 46.40 2.57
20 21 8.684386 TGATTACAAGTCAACCAATTGAAGTA 57.316 30.769 7.12 0.00 46.40 2.24
21 22 7.581213 TGATTACAAGTCAACCAATTGAAGT 57.419 32.000 7.12 0.00 46.40 3.01
22 23 8.285776 GTTGATTACAAGTCAACCAATTGAAG 57.714 34.615 7.12 0.00 46.40 3.02
37 38 9.146984 CCGTCTTTTCTATGTAGTTGATTACAA 57.853 33.333 0.00 0.00 37.13 2.41
38 39 8.525316 TCCGTCTTTTCTATGTAGTTGATTACA 58.475 33.333 0.00 0.00 37.89 2.41
39 40 8.805688 GTCCGTCTTTTCTATGTAGTTGATTAC 58.194 37.037 0.00 0.00 0.00 1.89
40 41 8.525316 TGTCCGTCTTTTCTATGTAGTTGATTA 58.475 33.333 0.00 0.00 0.00 1.75
41 42 7.383687 TGTCCGTCTTTTCTATGTAGTTGATT 58.616 34.615 0.00 0.00 0.00 2.57
42 43 6.931838 TGTCCGTCTTTTCTATGTAGTTGAT 58.068 36.000 0.00 0.00 0.00 2.57
43 44 6.335471 TGTCCGTCTTTTCTATGTAGTTGA 57.665 37.500 0.00 0.00 0.00 3.18
44 45 6.090898 CCTTGTCCGTCTTTTCTATGTAGTTG 59.909 42.308 0.00 0.00 0.00 3.16
45 46 6.164176 CCTTGTCCGTCTTTTCTATGTAGTT 58.836 40.000 0.00 0.00 0.00 2.24
46 47 5.721232 CCTTGTCCGTCTTTTCTATGTAGT 58.279 41.667 0.00 0.00 0.00 2.73
47 48 4.567159 GCCTTGTCCGTCTTTTCTATGTAG 59.433 45.833 0.00 0.00 0.00 2.74
48 49 4.501071 GCCTTGTCCGTCTTTTCTATGTA 58.499 43.478 0.00 0.00 0.00 2.29
49 50 3.335579 GCCTTGTCCGTCTTTTCTATGT 58.664 45.455 0.00 0.00 0.00 2.29
50 51 2.348666 CGCCTTGTCCGTCTTTTCTATG 59.651 50.000 0.00 0.00 0.00 2.23
51 52 2.028385 ACGCCTTGTCCGTCTTTTCTAT 60.028 45.455 0.00 0.00 32.83 1.98
52 53 1.342174 ACGCCTTGTCCGTCTTTTCTA 59.658 47.619 0.00 0.00 32.83 2.10
53 54 0.106149 ACGCCTTGTCCGTCTTTTCT 59.894 50.000 0.00 0.00 32.83 2.52
54 55 2.613390 ACGCCTTGTCCGTCTTTTC 58.387 52.632 0.00 0.00 32.83 2.29
55 56 4.870190 ACGCCTTGTCCGTCTTTT 57.130 50.000 0.00 0.00 32.83 2.27
62 63 3.914514 CATGAAATGTTGACGCCTTGTCC 60.915 47.826 0.00 0.00 42.68 4.02
63 64 3.058293 TCATGAAATGTTGACGCCTTGTC 60.058 43.478 0.00 0.00 46.80 3.18
64 65 2.884012 TCATGAAATGTTGACGCCTTGT 59.116 40.909 0.00 0.00 46.80 3.16
65 66 3.236816 GTCATGAAATGTTGACGCCTTG 58.763 45.455 0.00 0.00 46.80 3.61
66 67 2.228822 GGTCATGAAATGTTGACGCCTT 59.771 45.455 0.00 0.00 46.80 4.35
67 68 1.812571 GGTCATGAAATGTTGACGCCT 59.187 47.619 0.00 0.00 46.80 5.52
68 69 1.539388 TGGTCATGAAATGTTGACGCC 59.461 47.619 0.00 0.00 46.80 5.68
69 70 2.031245 TGTGGTCATGAAATGTTGACGC 60.031 45.455 0.00 0.00 46.80 5.19
70 71 3.894782 TGTGGTCATGAAATGTTGACG 57.105 42.857 0.00 0.00 46.80 4.35
71 72 4.984161 CCTTTGTGGTCATGAAATGTTGAC 59.016 41.667 0.00 0.00 46.80 3.18
72 73 5.199024 CCTTTGTGGTCATGAAATGTTGA 57.801 39.130 0.00 0.00 46.80 3.18
89 90 9.559958 CATATGCTAGTAAGACAAAAACCTTTG 57.440 33.333 0.00 0.00 46.26 2.77
90 91 8.739972 CCATATGCTAGTAAGACAAAAACCTTT 58.260 33.333 0.00 0.00 0.00 3.11
91 92 8.107095 TCCATATGCTAGTAAGACAAAAACCTT 58.893 33.333 0.00 0.00 0.00 3.50
92 93 7.630082 TCCATATGCTAGTAAGACAAAAACCT 58.370 34.615 0.00 0.00 0.00 3.50
93 94 7.859325 TCCATATGCTAGTAAGACAAAAACC 57.141 36.000 0.00 0.00 0.00 3.27
96 97 9.733556 TCTTTTCCATATGCTAGTAAGACAAAA 57.266 29.630 0.00 0.00 0.00 2.44
97 98 9.733556 TTCTTTTCCATATGCTAGTAAGACAAA 57.266 29.630 0.00 0.00 0.00 2.83
98 99 9.733556 TTTCTTTTCCATATGCTAGTAAGACAA 57.266 29.630 0.00 0.00 0.00 3.18
99 100 9.733556 TTTTCTTTTCCATATGCTAGTAAGACA 57.266 29.630 0.00 0.00 0.00 3.41
101 102 9.959721 ACTTTTCTTTTCCATATGCTAGTAAGA 57.040 29.630 0.00 0.00 0.00 2.10
102 103 9.994432 CACTTTTCTTTTCCATATGCTAGTAAG 57.006 33.333 0.00 0.00 0.00 2.34
103 104 8.458843 GCACTTTTCTTTTCCATATGCTAGTAA 58.541 33.333 0.00 0.00 0.00 2.24
104 105 7.067008 GGCACTTTTCTTTTCCATATGCTAGTA 59.933 37.037 0.00 0.00 0.00 1.82
105 106 6.127619 GGCACTTTTCTTTTCCATATGCTAGT 60.128 38.462 0.00 0.00 0.00 2.57
106 107 6.096001 AGGCACTTTTCTTTTCCATATGCTAG 59.904 38.462 0.00 0.00 27.25 3.42
107 108 5.951747 AGGCACTTTTCTTTTCCATATGCTA 59.048 36.000 0.00 0.00 27.25 3.49
108 109 4.774200 AGGCACTTTTCTTTTCCATATGCT 59.226 37.500 0.00 0.00 27.25 3.79
109 110 5.077134 AGGCACTTTTCTTTTCCATATGC 57.923 39.130 0.00 0.00 27.25 3.14
110 111 6.071728 ACAGAGGCACTTTTCTTTTCCATATG 60.072 38.462 0.00 0.00 41.55 1.78
111 112 6.012745 ACAGAGGCACTTTTCTTTTCCATAT 58.987 36.000 0.00 0.00 41.55 1.78
112 113 5.385198 ACAGAGGCACTTTTCTTTTCCATA 58.615 37.500 0.00 0.00 41.55 2.74
113 114 4.218312 ACAGAGGCACTTTTCTTTTCCAT 58.782 39.130 0.00 0.00 41.55 3.41
114 115 3.631250 ACAGAGGCACTTTTCTTTTCCA 58.369 40.909 0.00 0.00 41.55 3.53
115 116 3.632145 TGACAGAGGCACTTTTCTTTTCC 59.368 43.478 0.00 0.00 41.55 3.13
116 117 4.900635 TGACAGAGGCACTTTTCTTTTC 57.099 40.909 0.00 0.00 41.55 2.29
117 118 4.949856 TCTTGACAGAGGCACTTTTCTTTT 59.050 37.500 0.00 0.00 41.55 2.27
118 119 4.526970 TCTTGACAGAGGCACTTTTCTTT 58.473 39.130 0.00 0.00 41.55 2.52
119 120 4.156455 TCTTGACAGAGGCACTTTTCTT 57.844 40.909 0.00 0.00 41.55 2.52
120 121 3.845781 TCTTGACAGAGGCACTTTTCT 57.154 42.857 0.00 0.00 41.55 2.52
121 122 4.480386 CTTCTTGACAGAGGCACTTTTC 57.520 45.455 0.00 0.00 41.55 2.29
129 130 2.031333 GCTGTTTGCTTCTTGACAGAGG 60.031 50.000 6.54 0.00 41.46 3.69
130 131 2.615447 TGCTGTTTGCTTCTTGACAGAG 59.385 45.455 6.54 0.00 41.46 3.35
131 132 2.642427 TGCTGTTTGCTTCTTGACAGA 58.358 42.857 6.54 0.00 41.46 3.41
132 133 3.637998 ATGCTGTTTGCTTCTTGACAG 57.362 42.857 0.00 0.00 43.37 3.51
133 134 3.253188 GGTATGCTGTTTGCTTCTTGACA 59.747 43.478 0.00 0.00 43.37 3.58
134 135 3.253188 TGGTATGCTGTTTGCTTCTTGAC 59.747 43.478 0.00 0.00 43.37 3.18
135 136 3.485394 TGGTATGCTGTTTGCTTCTTGA 58.515 40.909 0.00 0.00 43.37 3.02
136 137 3.921119 TGGTATGCTGTTTGCTTCTTG 57.079 42.857 0.00 0.00 43.37 3.02
137 138 4.081406 TCATGGTATGCTGTTTGCTTCTT 58.919 39.130 0.00 0.00 43.37 2.52
138 139 3.689347 TCATGGTATGCTGTTTGCTTCT 58.311 40.909 0.00 0.00 43.37 2.85
139 140 4.439305 TTCATGGTATGCTGTTTGCTTC 57.561 40.909 0.00 0.00 43.37 3.86
140 141 4.708421 AGATTCATGGTATGCTGTTTGCTT 59.292 37.500 0.00 0.00 43.37 3.91
141 142 4.275810 AGATTCATGGTATGCTGTTTGCT 58.724 39.130 0.00 0.00 43.37 3.91
142 143 4.096833 TGAGATTCATGGTATGCTGTTTGC 59.903 41.667 0.00 0.00 43.25 3.68
143 144 5.823209 TGAGATTCATGGTATGCTGTTTG 57.177 39.130 0.00 0.00 0.00 2.93
144 145 5.237996 CGATGAGATTCATGGTATGCTGTTT 59.762 40.000 0.00 0.00 37.20 2.83
145 146 4.753610 CGATGAGATTCATGGTATGCTGTT 59.246 41.667 0.00 0.00 37.20 3.16
146 147 4.202295 ACGATGAGATTCATGGTATGCTGT 60.202 41.667 5.12 0.00 42.67 4.40
147 148 4.151867 CACGATGAGATTCATGGTATGCTG 59.848 45.833 6.42 0.00 42.61 4.41
148 149 4.313282 CACGATGAGATTCATGGTATGCT 58.687 43.478 6.42 0.00 42.61 3.79
149 150 3.120408 GCACGATGAGATTCATGGTATGC 60.120 47.826 6.42 4.33 42.61 3.14
150 151 4.060205 TGCACGATGAGATTCATGGTATG 58.940 43.478 6.42 0.00 42.61 2.39
151 152 4.341366 TGCACGATGAGATTCATGGTAT 57.659 40.909 6.42 0.00 42.61 2.73
152 153 3.817709 TGCACGATGAGATTCATGGTA 57.182 42.857 6.42 0.00 42.61 3.25
153 154 2.696989 TGCACGATGAGATTCATGGT 57.303 45.000 1.53 1.53 44.80 3.55
154 155 3.562557 TGATTGCACGATGAGATTCATGG 59.437 43.478 0.00 0.00 37.20 3.66
155 156 4.524749 GTGATTGCACGATGAGATTCATG 58.475 43.478 0.00 0.00 34.53 3.07
156 157 4.808077 GTGATTGCACGATGAGATTCAT 57.192 40.909 0.00 0.00 36.05 2.57
168 169 1.226491 GCAGATGCCGTGATTGCAC 60.226 57.895 0.00 0.00 42.38 4.57
169 170 3.189921 GCAGATGCCGTGATTGCA 58.810 55.556 0.00 0.00 43.97 4.08
179 180 3.628942 TCTCACATTACAATGGCAGATGC 59.371 43.478 6.87 0.00 40.70 3.91
180 181 5.823209 TTCTCACATTACAATGGCAGATG 57.177 39.130 6.87 0.00 40.70 2.90
181 182 5.948162 AGTTTCTCACATTACAATGGCAGAT 59.052 36.000 6.87 0.00 40.70 2.90
182 183 5.316167 AGTTTCTCACATTACAATGGCAGA 58.684 37.500 6.87 4.46 40.70 4.26
183 184 5.633830 AGTTTCTCACATTACAATGGCAG 57.366 39.130 6.87 2.38 40.70 4.85
184 185 6.403866 AAAGTTTCTCACATTACAATGGCA 57.596 33.333 6.87 0.00 40.70 4.92
185 186 7.713764 AAAAAGTTTCTCACATTACAATGGC 57.286 32.000 6.87 0.00 40.70 4.40
223 224 2.990479 CTGAGGCCAGGGTACACC 59.010 66.667 5.01 0.00 36.77 4.16
224 225 1.915078 ATGCTGAGGCCAGGGTACAC 61.915 60.000 5.01 0.00 40.72 2.90
225 226 1.616327 ATGCTGAGGCCAGGGTACA 60.616 57.895 5.01 0.00 40.72 2.90
226 227 1.147153 GATGCTGAGGCCAGGGTAC 59.853 63.158 5.01 0.00 40.72 3.34
227 228 0.913934 TTGATGCTGAGGCCAGGGTA 60.914 55.000 5.01 0.00 40.72 3.69
228 229 2.233566 TTGATGCTGAGGCCAGGGT 61.234 57.895 5.01 0.00 40.72 4.34
229 230 1.751927 GTTGATGCTGAGGCCAGGG 60.752 63.158 5.01 0.00 40.72 4.45
230 231 1.030488 CAGTTGATGCTGAGGCCAGG 61.030 60.000 5.01 0.00 40.72 4.45
231 232 0.035725 TCAGTTGATGCTGAGGCCAG 60.036 55.000 5.01 0.00 40.23 4.85
232 233 2.068915 TCAGTTGATGCTGAGGCCA 58.931 52.632 5.01 0.00 40.23 5.36
242 243 1.536766 CGGTTGTGTGCATCAGTTGAT 59.463 47.619 0.00 0.00 34.56 2.57
243 244 0.943673 CGGTTGTGTGCATCAGTTGA 59.056 50.000 0.00 0.00 0.00 3.18
244 245 0.661187 GCGGTTGTGTGCATCAGTTG 60.661 55.000 0.00 0.00 0.00 3.16
245 246 1.100463 TGCGGTTGTGTGCATCAGTT 61.100 50.000 0.00 0.00 35.90 3.16
246 247 1.525765 TGCGGTTGTGTGCATCAGT 60.526 52.632 0.00 0.00 35.90 3.41
247 248 3.342909 TGCGGTTGTGTGCATCAG 58.657 55.556 0.00 0.00 35.90 2.90
251 252 0.030504 CAGAAATGCGGTTGTGTGCA 59.969 50.000 0.00 0.00 46.51 4.57
252 253 0.030638 ACAGAAATGCGGTTGTGTGC 59.969 50.000 1.73 0.00 34.02 4.57
253 254 2.490328 AACAGAAATGCGGTTGTGTG 57.510 45.000 3.19 0.00 35.37 3.82
254 255 3.003275 CAGTAACAGAAATGCGGTTGTGT 59.997 43.478 0.00 0.00 36.62 3.72
255 256 3.003275 ACAGTAACAGAAATGCGGTTGTG 59.997 43.478 0.00 0.00 35.64 3.33
256 257 3.211045 ACAGTAACAGAAATGCGGTTGT 58.789 40.909 0.00 0.00 35.64 3.32
257 258 3.896648 ACAGTAACAGAAATGCGGTTG 57.103 42.857 0.00 0.00 35.64 3.77
258 259 5.001232 ACATACAGTAACAGAAATGCGGTT 58.999 37.500 0.00 0.00 38.47 4.44
259 260 4.575885 ACATACAGTAACAGAAATGCGGT 58.424 39.130 0.00 0.00 0.00 5.68
260 261 6.701841 AGATACATACAGTAACAGAAATGCGG 59.298 38.462 0.00 0.00 36.05 5.69
261 262 7.357613 CGAGATACATACAGTAACAGAAATGCG 60.358 40.741 0.00 0.00 36.05 4.73
262 263 7.096023 CCGAGATACATACAGTAACAGAAATGC 60.096 40.741 0.00 0.00 36.05 3.56
263 264 7.921214 ACCGAGATACATACAGTAACAGAAATG 59.079 37.037 0.00 0.00 36.05 2.32
264 265 8.008513 ACCGAGATACATACAGTAACAGAAAT 57.991 34.615 0.00 0.00 36.05 2.17
265 266 7.400599 ACCGAGATACATACAGTAACAGAAA 57.599 36.000 0.00 0.00 36.05 2.52
266 267 7.094075 ACAACCGAGATACATACAGTAACAGAA 60.094 37.037 0.00 0.00 36.05 3.02
267 268 6.376299 ACAACCGAGATACATACAGTAACAGA 59.624 38.462 0.00 0.00 36.05 3.41
268 269 6.561614 ACAACCGAGATACATACAGTAACAG 58.438 40.000 0.00 0.00 36.05 3.16
269 270 6.519679 ACAACCGAGATACATACAGTAACA 57.480 37.500 0.00 0.00 36.05 2.41
282 283 8.981659 TGGATGATGATATATAACAACCGAGAT 58.018 33.333 0.00 0.00 0.00 2.75
283 284 8.361169 TGGATGATGATATATAACAACCGAGA 57.639 34.615 0.00 0.00 0.00 4.04
296 297 9.503399 CGATTGAATGGATATGGATGATGATAT 57.497 33.333 0.00 0.00 0.00 1.63
297 298 7.935210 CCGATTGAATGGATATGGATGATGATA 59.065 37.037 0.00 0.00 0.00 2.15
298 299 6.771267 CCGATTGAATGGATATGGATGATGAT 59.229 38.462 0.00 0.00 0.00 2.45
299 300 6.117488 CCGATTGAATGGATATGGATGATGA 58.883 40.000 0.00 0.00 0.00 2.92
300 301 5.220989 GCCGATTGAATGGATATGGATGATG 60.221 44.000 0.00 0.00 0.00 3.07
301 302 4.885907 GCCGATTGAATGGATATGGATGAT 59.114 41.667 0.00 0.00 0.00 2.45
302 303 4.019051 AGCCGATTGAATGGATATGGATGA 60.019 41.667 0.00 0.00 0.00 2.92
303 304 4.095932 CAGCCGATTGAATGGATATGGATG 59.904 45.833 0.00 0.00 0.00 3.51
304 305 4.267536 CAGCCGATTGAATGGATATGGAT 58.732 43.478 0.00 0.00 0.00 3.41
305 306 3.559811 CCAGCCGATTGAATGGATATGGA 60.560 47.826 0.00 0.00 34.60 3.41
306 307 2.751259 CCAGCCGATTGAATGGATATGG 59.249 50.000 0.00 0.00 34.60 2.74
307 308 2.163010 GCCAGCCGATTGAATGGATATG 59.837 50.000 7.41 0.00 34.60 1.78
308 309 2.040813 AGCCAGCCGATTGAATGGATAT 59.959 45.455 7.41 0.00 34.60 1.63
309 310 1.421268 AGCCAGCCGATTGAATGGATA 59.579 47.619 7.41 0.00 34.60 2.59
310 311 0.184451 AGCCAGCCGATTGAATGGAT 59.816 50.000 7.41 0.00 34.60 3.41
311 312 0.034186 AAGCCAGCCGATTGAATGGA 60.034 50.000 7.41 0.00 34.60 3.41
312 313 1.679139 TAAGCCAGCCGATTGAATGG 58.321 50.000 0.00 0.18 35.84 3.16
313 314 3.567164 AGATTAAGCCAGCCGATTGAATG 59.433 43.478 0.00 0.00 0.00 2.67
314 315 3.825328 AGATTAAGCCAGCCGATTGAAT 58.175 40.909 0.00 0.00 0.00 2.57
315 316 3.281727 AGATTAAGCCAGCCGATTGAA 57.718 42.857 0.00 0.00 0.00 2.69
316 317 3.281727 AAGATTAAGCCAGCCGATTGA 57.718 42.857 0.00 0.00 0.00 2.57
317 318 4.083110 CCATAAGATTAAGCCAGCCGATTG 60.083 45.833 0.00 0.00 0.00 2.67
318 319 4.074970 CCATAAGATTAAGCCAGCCGATT 58.925 43.478 0.00 0.00 0.00 3.34
319 320 3.073062 ACCATAAGATTAAGCCAGCCGAT 59.927 43.478 0.00 0.00 0.00 4.18
320 321 2.438021 ACCATAAGATTAAGCCAGCCGA 59.562 45.455 0.00 0.00 0.00 5.54
321 322 2.851195 ACCATAAGATTAAGCCAGCCG 58.149 47.619 0.00 0.00 0.00 5.52
322 323 4.276926 CAGAACCATAAGATTAAGCCAGCC 59.723 45.833 0.00 0.00 0.00 4.85
323 324 4.261363 GCAGAACCATAAGATTAAGCCAGC 60.261 45.833 0.00 0.00 0.00 4.85
324 325 4.276926 GGCAGAACCATAAGATTAAGCCAG 59.723 45.833 0.00 0.00 38.27 4.85
325 326 4.079787 AGGCAGAACCATAAGATTAAGCCA 60.080 41.667 0.00 0.00 43.14 4.75
326 327 4.276926 CAGGCAGAACCATAAGATTAAGCC 59.723 45.833 0.00 0.00 43.14 4.35
327 328 4.261363 GCAGGCAGAACCATAAGATTAAGC 60.261 45.833 0.00 0.00 43.14 3.09
328 329 4.024556 CGCAGGCAGAACCATAAGATTAAG 60.025 45.833 0.00 0.00 43.14 1.85
329 330 3.876914 CGCAGGCAGAACCATAAGATTAA 59.123 43.478 0.00 0.00 43.14 1.40
330 331 3.118408 ACGCAGGCAGAACCATAAGATTA 60.118 43.478 0.00 0.00 43.14 1.75
331 332 2.292267 CGCAGGCAGAACCATAAGATT 58.708 47.619 0.00 0.00 43.14 2.40
332 333 1.210478 ACGCAGGCAGAACCATAAGAT 59.790 47.619 0.00 0.00 43.14 2.40
333 334 0.613260 ACGCAGGCAGAACCATAAGA 59.387 50.000 0.00 0.00 43.14 2.10
334 335 1.009829 GACGCAGGCAGAACCATAAG 58.990 55.000 0.00 0.00 43.14 1.73
335 336 0.323302 TGACGCAGGCAGAACCATAA 59.677 50.000 0.00 0.00 43.14 1.90
336 337 0.541392 ATGACGCAGGCAGAACCATA 59.459 50.000 0.00 0.00 43.14 2.74
337 338 1.028330 CATGACGCAGGCAGAACCAT 61.028 55.000 0.00 0.00 43.14 3.55
338 339 1.672030 CATGACGCAGGCAGAACCA 60.672 57.895 0.00 0.00 43.14 3.67
339 340 3.044059 GCATGACGCAGGCAGAACC 62.044 63.158 10.73 0.00 41.05 3.62
340 341 2.482374 GCATGACGCAGGCAGAAC 59.518 61.111 10.73 0.00 41.05 3.01
341 342 2.747460 GGCATGACGCAGGCAGAA 60.747 61.111 15.97 0.00 43.30 3.02
342 343 4.019312 TGGCATGACGCAGGCAGA 62.019 61.111 15.97 2.22 43.30 4.26
343 344 3.807538 GTGGCATGACGCAGGCAG 61.808 66.667 7.39 0.00 43.30 4.85
344 345 3.923782 ATGTGGCATGACGCAGGCA 62.924 57.895 21.31 0.00 43.30 4.75
345 346 3.136123 ATGTGGCATGACGCAGGC 61.136 61.111 21.31 7.75 45.17 4.85
346 347 2.795973 CATGTGGCATGACGCAGG 59.204 61.111 21.31 17.31 45.17 4.85
347 348 2.101575 GCATGTGGCATGACGCAG 59.898 61.111 21.31 13.26 45.17 5.18
348 349 3.801971 CGCATGTGGCATGACGCA 61.802 61.111 18.93 18.93 45.17 5.24
349 350 3.498834 TCGCATGTGGCATGACGC 61.499 61.111 4.75 4.75 45.17 5.19
350 351 2.389809 TGTCGCATGTGGCATGACG 61.390 57.895 10.02 13.89 45.17 4.35
351 352 1.135315 GTGTCGCATGTGGCATGAC 59.865 57.895 17.79 0.00 45.17 3.06
352 353 0.888285 TTGTGTCGCATGTGGCATGA 60.888 50.000 17.79 5.94 45.17 3.07
353 354 0.039346 TTTGTGTCGCATGTGGCATG 60.039 50.000 17.79 4.87 45.17 4.06
354 355 0.889994 ATTTGTGTCGCATGTGGCAT 59.110 45.000 17.79 0.00 45.17 4.40
355 356 0.240678 GATTTGTGTCGCATGTGGCA 59.759 50.000 10.02 10.02 45.17 4.92
356 357 0.523072 AGATTTGTGTCGCATGTGGC 59.477 50.000 3.29 3.29 39.90 5.01
357 358 3.374988 ACATAGATTTGTGTCGCATGTGG 59.625 43.478 6.39 0.00 31.69 4.17
358 359 4.604843 ACATAGATTTGTGTCGCATGTG 57.395 40.909 0.00 0.00 31.69 3.21
359 360 5.419542 ACTACATAGATTTGTGTCGCATGT 58.580 37.500 0.00 0.00 34.87 3.21
360 361 5.973651 ACTACATAGATTTGTGTCGCATG 57.026 39.130 0.00 0.00 30.70 4.06
361 362 5.685954 CGTACTACATAGATTTGTGTCGCAT 59.314 40.000 0.00 0.00 30.70 4.73
362 363 5.032220 CGTACTACATAGATTTGTGTCGCA 58.968 41.667 0.00 0.00 30.70 5.10
363 364 5.032863 ACGTACTACATAGATTTGTGTCGC 58.967 41.667 0.00 0.00 30.70 5.19
364 365 8.605354 TTTACGTACTACATAGATTTGTGTCG 57.395 34.615 0.00 0.00 30.70 4.35
373 374 9.070179 TGCCAATCTATTTACGTACTACATAGA 57.930 33.333 12.16 12.16 32.36 1.98
374 375 9.856488 ATGCCAATCTATTTACGTACTACATAG 57.144 33.333 0.00 0.00 0.00 2.23
375 376 9.850628 GATGCCAATCTATTTACGTACTACATA 57.149 33.333 0.00 0.00 0.00 2.29
376 377 8.364894 TGATGCCAATCTATTTACGTACTACAT 58.635 33.333 0.00 0.00 33.61 2.29
377 378 7.718525 TGATGCCAATCTATTTACGTACTACA 58.281 34.615 0.00 0.00 33.61 2.74
378 379 7.328737 CCTGATGCCAATCTATTTACGTACTAC 59.671 40.741 0.00 0.00 33.61 2.73
379 380 7.375834 CCTGATGCCAATCTATTTACGTACTA 58.624 38.462 0.00 0.00 33.61 1.82
380 381 6.223852 CCTGATGCCAATCTATTTACGTACT 58.776 40.000 0.00 0.00 33.61 2.73
381 382 5.408604 CCCTGATGCCAATCTATTTACGTAC 59.591 44.000 0.00 0.00 33.61 3.67
382 383 5.547465 CCCTGATGCCAATCTATTTACGTA 58.453 41.667 0.00 0.00 33.61 3.57
383 384 4.389374 CCCTGATGCCAATCTATTTACGT 58.611 43.478 0.00 0.00 33.61 3.57
384 385 3.189287 GCCCTGATGCCAATCTATTTACG 59.811 47.826 0.00 0.00 33.61 3.18
385 386 3.189287 CGCCCTGATGCCAATCTATTTAC 59.811 47.826 0.00 0.00 33.61 2.01
386 387 3.072330 TCGCCCTGATGCCAATCTATTTA 59.928 43.478 0.00 0.00 33.61 1.40
387 388 2.158623 TCGCCCTGATGCCAATCTATTT 60.159 45.455 0.00 0.00 33.61 1.40
388 389 1.421268 TCGCCCTGATGCCAATCTATT 59.579 47.619 0.00 0.00 33.61 1.73
389 390 1.002888 CTCGCCCTGATGCCAATCTAT 59.997 52.381 0.00 0.00 33.61 1.98
390 391 0.394192 CTCGCCCTGATGCCAATCTA 59.606 55.000 0.00 0.00 33.61 1.98
391 392 1.147824 CTCGCCCTGATGCCAATCT 59.852 57.895 0.00 0.00 33.61 2.40
392 393 1.895707 CCTCGCCCTGATGCCAATC 60.896 63.158 0.00 0.00 0.00 2.67
393 394 2.194056 CCTCGCCCTGATGCCAAT 59.806 61.111 0.00 0.00 0.00 3.16
394 395 4.113815 CCCTCGCCCTGATGCCAA 62.114 66.667 0.00 0.00 0.00 4.52
398 399 4.161295 TTCGCCCTCGCCCTGATG 62.161 66.667 0.00 0.00 35.26 3.07
399 400 4.162690 GTTCGCCCTCGCCCTGAT 62.163 66.667 0.00 0.00 35.26 2.90
401 402 2.311688 ATAAGTTCGCCCTCGCCCTG 62.312 60.000 0.00 0.00 35.26 4.45
402 403 2.029307 GATAAGTTCGCCCTCGCCCT 62.029 60.000 0.00 0.00 35.26 5.19
403 404 1.594564 GATAAGTTCGCCCTCGCCC 60.595 63.158 0.00 0.00 35.26 6.13
404 405 0.672342 TAGATAAGTTCGCCCTCGCC 59.328 55.000 0.00 0.00 35.26 5.54
405 406 2.726832 ATAGATAAGTTCGCCCTCGC 57.273 50.000 0.00 0.00 35.26 5.03
406 407 6.622549 AGAAATATAGATAAGTTCGCCCTCG 58.377 40.000 0.00 0.00 0.00 4.63
407 408 8.834749 AAAGAAATATAGATAAGTTCGCCCTC 57.165 34.615 0.00 0.00 0.00 4.30
428 429 9.842775 AGTCTGCATATCATCAATTCTTAAAGA 57.157 29.630 0.00 0.00 0.00 2.52
434 435 9.842775 TCTTTTAGTCTGCATATCATCAATTCT 57.157 29.630 0.00 0.00 0.00 2.40
446 447 9.466497 TCCTATCATTTTTCTTTTAGTCTGCAT 57.534 29.630 0.00 0.00 0.00 3.96
447 448 8.862325 TCCTATCATTTTTCTTTTAGTCTGCA 57.138 30.769 0.00 0.00 0.00 4.41
561 562 8.989980 GCCCACTAATATATACAGTTTGTTCTC 58.010 37.037 0.00 0.00 0.00 2.87
562 563 7.937394 GGCCCACTAATATATACAGTTTGTTCT 59.063 37.037 0.00 0.00 0.00 3.01
563 564 7.095355 CGGCCCACTAATATATACAGTTTGTTC 60.095 40.741 0.00 0.00 0.00 3.18
564 565 6.708949 CGGCCCACTAATATATACAGTTTGTT 59.291 38.462 0.00 0.00 0.00 2.83
565 566 6.228258 CGGCCCACTAATATATACAGTTTGT 58.772 40.000 0.00 0.00 0.00 2.83
566 567 5.121768 GCGGCCCACTAATATATACAGTTTG 59.878 44.000 0.00 0.00 0.00 2.93
567 568 5.243207 GCGGCCCACTAATATATACAGTTT 58.757 41.667 0.00 0.00 0.00 2.66
568 569 4.619863 CGCGGCCCACTAATATATACAGTT 60.620 45.833 0.00 0.00 0.00 3.16
569 570 3.119245 CGCGGCCCACTAATATATACAGT 60.119 47.826 0.00 0.00 0.00 3.55
570 571 3.444916 CGCGGCCCACTAATATATACAG 58.555 50.000 0.00 0.00 0.00 2.74
571 572 2.417651 GCGCGGCCCACTAATATATACA 60.418 50.000 8.83 0.00 0.00 2.29
572 573 2.199236 GCGCGGCCCACTAATATATAC 58.801 52.381 8.83 0.00 0.00 1.47
573 574 1.826096 TGCGCGGCCCACTAATATATA 59.174 47.619 8.83 0.00 0.00 0.86
574 575 0.611200 TGCGCGGCCCACTAATATAT 59.389 50.000 8.83 0.00 0.00 0.86
575 576 0.393448 TTGCGCGGCCCACTAATATA 59.607 50.000 8.83 0.00 0.00 0.86
576 577 0.464735 TTTGCGCGGCCCACTAATAT 60.465 50.000 8.83 0.00 0.00 1.28
577 578 0.677098 TTTTGCGCGGCCCACTAATA 60.677 50.000 8.83 0.00 0.00 0.98
578 579 1.319614 ATTTTGCGCGGCCCACTAAT 61.320 50.000 8.83 0.00 0.00 1.73
579 580 0.677098 TATTTTGCGCGGCCCACTAA 60.677 50.000 8.83 0.00 0.00 2.24
580 581 1.078356 TATTTTGCGCGGCCCACTA 60.078 52.632 8.83 0.00 0.00 2.74
581 582 2.360600 TATTTTGCGCGGCCCACT 60.361 55.556 8.83 0.00 0.00 4.00
582 583 2.202557 GTATTTTGCGCGGCCCAC 60.203 61.111 8.83 0.00 0.00 4.61
583 584 1.599606 ATTGTATTTTGCGCGGCCCA 61.600 50.000 8.83 0.00 0.00 5.36
584 585 0.869880 GATTGTATTTTGCGCGGCCC 60.870 55.000 8.83 0.00 0.00 5.80
585 586 0.869880 GGATTGTATTTTGCGCGGCC 60.870 55.000 8.83 0.00 0.00 6.13
586 587 0.179150 TGGATTGTATTTTGCGCGGC 60.179 50.000 8.83 0.00 0.00 6.53
587 588 2.159448 TCTTGGATTGTATTTTGCGCGG 60.159 45.455 8.83 0.00 0.00 6.46
588 589 3.100817 CTCTTGGATTGTATTTTGCGCG 58.899 45.455 0.00 0.00 0.00 6.86
589 590 4.355543 TCTCTTGGATTGTATTTTGCGC 57.644 40.909 0.00 0.00 0.00 6.09
590 591 5.283717 CGTTTCTCTTGGATTGTATTTTGCG 59.716 40.000 0.00 0.00 0.00 4.85
591 592 6.149633 ACGTTTCTCTTGGATTGTATTTTGC 58.850 36.000 0.00 0.00 0.00 3.68
592 593 8.574196 AAACGTTTCTCTTGGATTGTATTTTG 57.426 30.769 7.96 0.00 0.00 2.44
593 594 8.410141 TGAAACGTTTCTCTTGGATTGTATTTT 58.590 29.630 33.94 0.00 38.02 1.82
594 595 7.936584 TGAAACGTTTCTCTTGGATTGTATTT 58.063 30.769 33.94 0.00 38.02 1.40
595 596 7.504924 TGAAACGTTTCTCTTGGATTGTATT 57.495 32.000 33.94 0.00 38.02 1.89
596 597 6.348540 GCTGAAACGTTTCTCTTGGATTGTAT 60.349 38.462 33.94 0.06 38.02 2.29
597 598 5.049680 GCTGAAACGTTTCTCTTGGATTGTA 60.050 40.000 33.94 13.97 38.02 2.41
598 599 4.261197 GCTGAAACGTTTCTCTTGGATTGT 60.261 41.667 33.94 1.20 38.02 2.71
599 600 4.222114 GCTGAAACGTTTCTCTTGGATTG 58.778 43.478 33.94 16.81 38.02 2.67
600 601 3.253432 GGCTGAAACGTTTCTCTTGGATT 59.747 43.478 33.94 1.96 38.02 3.01
601 602 2.814336 GGCTGAAACGTTTCTCTTGGAT 59.186 45.455 33.94 2.73 38.02 3.41
602 603 2.158813 AGGCTGAAACGTTTCTCTTGGA 60.159 45.455 33.94 16.95 38.02 3.53
603 604 2.031682 CAGGCTGAAACGTTTCTCTTGG 60.032 50.000 33.94 20.25 38.02 3.61
604 605 2.872245 TCAGGCTGAAACGTTTCTCTTG 59.128 45.455 33.94 28.85 38.02 3.02
605 606 3.194005 TCAGGCTGAAACGTTTCTCTT 57.806 42.857 33.94 21.87 38.02 2.85
606 607 2.910688 TCAGGCTGAAACGTTTCTCT 57.089 45.000 33.94 25.73 38.02 3.10
607 608 2.349912 GCTTCAGGCTGAAACGTTTCTC 60.350 50.000 33.94 25.87 35.73 2.87
608 609 1.604278 GCTTCAGGCTGAAACGTTTCT 59.396 47.619 33.94 16.78 35.73 2.52
609 610 1.333619 TGCTTCAGGCTGAAACGTTTC 59.666 47.619 29.72 29.72 42.39 2.78
610 611 1.065551 GTGCTTCAGGCTGAAACGTTT 59.934 47.619 28.27 14.57 42.39 3.60
611 612 0.663153 GTGCTTCAGGCTGAAACGTT 59.337 50.000 28.27 0.00 42.39 3.99
612 613 1.166531 GGTGCTTCAGGCTGAAACGT 61.167 55.000 28.27 0.00 42.39 3.99
613 614 0.886490 AGGTGCTTCAGGCTGAAACG 60.886 55.000 28.27 19.38 42.39 3.60
614 615 1.322442 AAGGTGCTTCAGGCTGAAAC 58.678 50.000 28.27 24.48 42.39 2.78
615 616 2.071778 AAAGGTGCTTCAGGCTGAAA 57.928 45.000 28.27 13.96 42.39 2.69
616 617 2.071778 AAAAGGTGCTTCAGGCTGAA 57.928 45.000 27.01 27.01 42.39 3.02
617 618 1.682854 CAAAAAGGTGCTTCAGGCTGA 59.317 47.619 14.43 14.43 42.39 4.26
618 619 1.410153 ACAAAAAGGTGCTTCAGGCTG 59.590 47.619 8.58 8.58 42.39 4.85
619 620 1.780503 ACAAAAAGGTGCTTCAGGCT 58.219 45.000 0.00 0.00 42.39 4.58
620 621 2.204237 CAACAAAAAGGTGCTTCAGGC 58.796 47.619 0.00 0.00 42.22 4.85
628 629 8.419076 AATAGTAAAAGTGCAACAAAAAGGTG 57.581 30.769 0.00 0.00 41.43 4.00
629 630 9.443323 AAAATAGTAAAAGTGCAACAAAAAGGT 57.557 25.926 0.00 0.00 41.43 3.50
634 635 9.646427 ACTGAAAAATAGTAAAAGTGCAACAAA 57.354 25.926 0.00 0.00 41.43 2.83
635 636 9.296400 GACTGAAAAATAGTAAAAGTGCAACAA 57.704 29.630 0.00 0.00 41.43 2.83
636 637 7.642194 CGACTGAAAAATAGTAAAAGTGCAACA 59.358 33.333 0.00 0.00 41.43 3.33
637 638 7.642586 ACGACTGAAAAATAGTAAAAGTGCAAC 59.357 33.333 0.00 0.00 0.00 4.17
638 639 7.699566 ACGACTGAAAAATAGTAAAAGTGCAA 58.300 30.769 0.00 0.00 0.00 4.08
639 640 7.225931 AGACGACTGAAAAATAGTAAAAGTGCA 59.774 33.333 0.00 0.00 0.00 4.57
640 641 7.530861 CAGACGACTGAAAAATAGTAAAAGTGC 59.469 37.037 9.38 0.00 46.03 4.40
720 721 1.193650 TGAGGACAAACGAAAATCGCG 59.806 47.619 0.00 0.00 45.12 5.87
769 2897 0.030638 CGAAAGCCCAACAACACAGG 59.969 55.000 0.00 0.00 0.00 4.00
830 2961 8.700051 TGAATAGAAAATTCAAAAACACCTGGA 58.300 29.630 0.00 0.00 35.35 3.86
1244 3428 1.609932 GTGACAATCGCGACGAACTA 58.390 50.000 12.93 0.00 39.99 2.24
1444 3636 2.883574 TGAGGCGTAATTAGTGAACGG 58.116 47.619 0.36 0.00 37.12 4.44
1564 3756 2.893489 ACAAACATTCCTTGGGCTTCTC 59.107 45.455 0.00 0.00 0.00 2.87
1622 3814 6.876257 ACATTAGTACTCCTGCAGAAGAAAAG 59.124 38.462 17.39 5.08 0.00 2.27
1673 3889 5.291178 CCATCAAAATCAAGCTGACAAACA 58.709 37.500 0.00 0.00 0.00 2.83
1674 3890 4.151157 GCCATCAAAATCAAGCTGACAAAC 59.849 41.667 0.00 0.00 0.00 2.93
1675 3891 4.039488 AGCCATCAAAATCAAGCTGACAAA 59.961 37.500 0.00 0.00 0.00 2.83
1723 3942 8.762426 ACGTAATCACTAAACTCTCTGAAAAAC 58.238 33.333 0.00 0.00 0.00 2.43
1738 3958 6.710597 AAGCCATTCTCTACGTAATCACTA 57.289 37.500 0.00 0.00 0.00 2.74
1801 4021 6.870965 CACTAGTTTCAGAACAATCTACTGCT 59.129 38.462 0.00 0.00 38.26 4.24
1969 4198 9.959721 ACCAAACAGACTTACATACTGAATTAT 57.040 29.630 0.00 0.00 35.85 1.28
2001 4230 3.537580 AGCAAGTTGTTCGTTCAGGTTA 58.462 40.909 4.48 0.00 0.00 2.85
2024 4253 3.411446 TCGATGCACAGGACAAAAAGAT 58.589 40.909 0.00 0.00 0.00 2.40
2067 4298 9.949174 AAAATATTTTGCATTTCAAGGACAAAC 57.051 25.926 12.62 0.00 35.84 2.93
2110 4393 2.562298 TGCCAAGGGACATTTTAAGCTG 59.438 45.455 0.00 0.00 0.00 4.24
2121 4404 1.244019 ATTTGACGCTGCCAAGGGAC 61.244 55.000 0.00 0.00 39.59 4.46
2190 4474 7.275920 AGGAGCGTCTTAACATCTATTCATTT 58.724 34.615 0.00 0.00 0.00 2.32
2339 4623 9.453572 AAGAATGAAGACATAATGTGAGCTAAA 57.546 29.630 0.00 0.00 35.50 1.85
2577 4921 3.994392 TGAACAGAACGTGAAAGCTATCC 59.006 43.478 0.00 0.00 0.00 2.59
2587 4931 9.370126 CTAAGAAATAAAACTGAACAGAACGTG 57.630 33.333 8.87 0.00 0.00 4.49
2619 4963 8.572855 ACAAAATGAAAAACATGGAGGAAAAA 57.427 26.923 0.00 0.00 39.39 1.94
2677 5021 5.636903 ACATACACCAAGATAAGGAGCAT 57.363 39.130 0.00 0.00 0.00 3.79
2742 5089 2.516888 CGTCCAGAACACACCCCCT 61.517 63.158 0.00 0.00 0.00 4.79
2748 5095 1.686587 ACATCAGACGTCCAGAACACA 59.313 47.619 13.01 0.00 0.00 3.72
2778 5125 9.261180 GGCAAAAAGAAAGCTAAGAAAAATAGT 57.739 29.630 0.00 0.00 0.00 2.12
2802 5149 1.308998 GCACACCTACATGTATGGGC 58.691 55.000 15.88 15.88 33.68 5.36
2893 5242 0.735632 CTTCTCCAGACTGTCGCTGC 60.736 60.000 1.52 0.00 32.06 5.25
2910 5259 3.055602 TCATCACTGCATGTGCTACTCTT 60.056 43.478 6.55 0.00 45.81 2.85
3018 5375 6.808212 CAGAGCAAACAAAACAGAAAAAGAGA 59.192 34.615 0.00 0.00 0.00 3.10
3019 5376 6.808212 TCAGAGCAAACAAAACAGAAAAAGAG 59.192 34.615 0.00 0.00 0.00 2.85
3021 5378 6.949578 TCAGAGCAAACAAAACAGAAAAAG 57.050 33.333 0.00 0.00 0.00 2.27
3026 5383 4.269183 TCCTTCAGAGCAAACAAAACAGA 58.731 39.130 0.00 0.00 0.00 3.41
3074 5431 2.036992 AGCCGAATAGAGCATCCTCTTG 59.963 50.000 0.00 0.00 46.16 3.02
3075 5432 2.324541 AGCCGAATAGAGCATCCTCTT 58.675 47.619 0.00 0.00 46.16 2.85
3185 5546 3.525199 AGATTTGAGAGCCTGTTGGGTAT 59.475 43.478 0.00 0.00 45.24 2.73
3237 5598 5.416947 ACCTCGACTTTGATATTAGCGTTT 58.583 37.500 0.00 0.00 0.00 3.60
3456 5824 5.064707 CGAACCCGTATTTTGAGATCACATT 59.935 40.000 0.00 0.00 0.00 2.71
3527 5895 3.066291 ACGCAACCAACAATCCATCTA 57.934 42.857 0.00 0.00 0.00 1.98
3595 5963 6.019748 AGATGGACAGACTCCTTAGAAAGAA 58.980 40.000 0.00 0.00 40.26 2.52
3862 6230 1.763968 TGTGACAGTAGGATCCTCCG 58.236 55.000 20.22 10.51 42.75 4.63
3983 6351 5.413833 AGCCAAGCAATATATCCAGAAATCG 59.586 40.000 0.00 0.00 0.00 3.34
3986 6354 5.448654 ACAGCCAAGCAATATATCCAGAAA 58.551 37.500 0.00 0.00 0.00 2.52
3992 6361 6.867662 ACACTTACAGCCAAGCAATATATC 57.132 37.500 0.00 0.00 0.00 1.63
4148 6524 3.241530 TGCCTTGCTCGACCACCT 61.242 61.111 0.00 0.00 0.00 4.00
4416 6800 1.361668 AAACAGATGCTGCGCCGTAG 61.362 55.000 4.18 0.00 34.37 3.51
4421 6805 1.372004 TTGCAAACAGATGCTGCGC 60.372 52.632 0.00 0.00 46.54 6.09
4447 6831 2.845752 TAATGCCGTGACGAGCACCC 62.846 60.000 19.97 0.00 44.85 4.61
4455 6839 3.936453 TCCTTGTTGTATAATGCCGTGAC 59.064 43.478 0.00 0.00 0.00 3.67
4684 7083 9.696917 ACATTTTGAAAACCAGACTCATTTATC 57.303 29.630 0.00 0.00 0.00 1.75
4690 7089 6.405731 CCTGAACATTTTGAAAACCAGACTCA 60.406 38.462 10.60 5.24 0.00 3.41
4756 7155 4.870426 GCGTTGAAAAGAGATGATACTCCA 59.130 41.667 0.00 0.00 37.60 3.86
5118 7523 5.177511 TCATTGATCTTGACAGTTGTTCGAC 59.822 40.000 0.00 0.00 0.00 4.20
5119 7524 5.296748 TCATTGATCTTGACAGTTGTTCGA 58.703 37.500 0.00 0.00 0.00 3.71
5347 7754 9.095065 CGATGTAAAAAGCCACTACTAATTACT 57.905 33.333 0.00 0.00 0.00 2.24
5348 7755 8.876790 ACGATGTAAAAAGCCACTACTAATTAC 58.123 33.333 0.00 0.00 0.00 1.89
5349 7756 9.439500 AACGATGTAAAAAGCCACTACTAATTA 57.561 29.630 0.00 0.00 0.00 1.40
5350 7757 7.916914 ACGATGTAAAAAGCCACTACTAATT 57.083 32.000 0.00 0.00 0.00 1.40
5351 7758 7.916914 AACGATGTAAAAAGCCACTACTAAT 57.083 32.000 0.00 0.00 0.00 1.73
5739 8272 2.019984 GCAATCTGACCTCCAACATCC 58.980 52.381 0.00 0.00 0.00 3.51
5814 8347 0.179043 TGAACAGCTTTGTACGGCCA 60.179 50.000 2.24 0.00 0.00 5.36
6091 8631 6.672593 TCCCTCATAGCCTCATAACAAAAAT 58.327 36.000 0.00 0.00 0.00 1.82
6230 8779 0.251033 TGCTGATTGGTTGAGCTGCT 60.251 50.000 0.00 0.00 33.66 4.24
6511 9099 2.226674 TGGCATTGACGTTTCGCAATTA 59.773 40.909 0.00 0.00 33.86 1.40
6528 9116 0.325860 ACCCCTACCGTAGATTGGCA 60.326 55.000 7.16 0.00 0.00 4.92
6539 9127 2.830293 ACAACCTCTTCTACCCCTACC 58.170 52.381 0.00 0.00 0.00 3.18
6642 9230 6.857777 TTTTGGTCGCAAAATGATCAAATT 57.142 29.167 0.00 0.00 43.71 1.82
6976 10419 6.380846 TGGGAAAATAGATTTTGTATGCTGCT 59.619 34.615 4.98 0.00 39.86 4.24
6998 10441 7.490962 TGATCGTTGTTTAAGCTATATTGGG 57.509 36.000 0.00 0.00 0.00 4.12
7275 10723 3.651904 CCTTCCAGAGATTGAGGGATGAT 59.348 47.826 0.00 0.00 0.00 2.45
7333 10781 6.534475 AAAATGATAGATGCTGAGCCAAAA 57.466 33.333 0.23 0.00 0.00 2.44
7514 10967 3.195661 CGTTTACCCCTACTTGCTGATC 58.804 50.000 0.00 0.00 0.00 2.92
7862 11332 5.420725 GGGGGAAAGCATTTAGACAAAAT 57.579 39.130 0.00 0.00 39.27 1.82
7977 11455 4.220382 TGAAATTATGCTGGTCTGTTTGGG 59.780 41.667 0.00 0.00 0.00 4.12
8040 11518 2.270434 AGAGAGCCCTGACCCATTAA 57.730 50.000 0.00 0.00 0.00 1.40
8112 11590 9.599866 AAAAAGGAGGTGATGTTTTAGAAAAAG 57.400 29.630 0.00 0.00 0.00 2.27
8118 11596 7.510549 TCTGAAAAAGGAGGTGATGTTTTAG 57.489 36.000 0.00 0.00 0.00 1.85
8120 11598 6.790232 TTCTGAAAAAGGAGGTGATGTTTT 57.210 33.333 0.00 0.00 0.00 2.43
8202 11683 6.208007 TGTCTTCATGTGAGAAAATCTTGCAT 59.792 34.615 0.00 0.00 0.00 3.96
8203 11684 5.532032 TGTCTTCATGTGAGAAAATCTTGCA 59.468 36.000 3.67 0.00 0.00 4.08
8271 11752 5.220854 GCTCTTGTCTGCAGTGTTTTTCTTA 60.221 40.000 14.67 0.00 0.00 2.10
8449 12098 4.533311 ACGAAGTTACCCCTATCAAAAGGA 59.467 41.667 0.00 0.00 37.78 3.36
8450 12099 4.840271 ACGAAGTTACCCCTATCAAAAGG 58.160 43.478 0.00 0.00 37.78 3.11
8601 12595 6.322201 ACAACTTCCTCAACAGTTTCATTGAT 59.678 34.615 0.00 0.00 34.43 2.57
8608 12602 3.606687 ACGACAACTTCCTCAACAGTTT 58.393 40.909 0.00 0.00 30.48 2.66
8720 12716 9.646427 AAAGTAAATGATAGTCTGTCTCAGAAC 57.354 33.333 0.88 0.00 42.46 3.01
8755 12751 6.702716 AGTGAAAATTACGGGAGAACAAAA 57.297 33.333 0.00 0.00 0.00 2.44
8919 13220 6.433093 ACTTACCGAGCACAATTTATTCCTTT 59.567 34.615 0.00 0.00 0.00 3.11
8938 13239 0.179054 GCGAATGGGAGGGACTTACC 60.179 60.000 0.00 0.00 41.55 2.85
9003 13305 9.743057 TGATTGTACAAACTTATTGAACAAAGG 57.257 29.630 13.23 0.00 0.00 3.11
9143 13874 2.542411 CGCTACCAACATACCTACCGAC 60.542 54.545 0.00 0.00 0.00 4.79
9188 13919 2.742053 GCAAGGACGACAAAATGCTAGA 59.258 45.455 0.00 0.00 0.00 2.43
9197 13928 0.759959 TAACAGGGCAAGGACGACAA 59.240 50.000 0.00 0.00 0.00 3.18
9369 14103 5.045869 ACGACATCCCCAAAAAGAAGAGATA 60.046 40.000 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.