Multiple sequence alignment - TraesCS6B01G455300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G455300 chr6B 100.000 2936 0 0 1 2936 712250503 712253438 0.000000e+00 5422.0
1 TraesCS6B01G455300 chr6B 90.130 385 14 13 2536 2906 716254319 716253945 2.050000e-131 479.0
2 TraesCS6B01G455300 chr6D 89.996 2559 137 45 1 2488 467047753 467050263 0.000000e+00 3197.0
3 TraesCS6B01G455300 chr6D 94.444 216 12 0 2691 2906 467050557 467050772 1.690000e-87 333.0
4 TraesCS6B01G455300 chr6D 82.915 199 11 10 2509 2686 467050256 467050452 1.090000e-34 158.0
5 TraesCS6B01G455300 chr6A 90.487 2239 118 38 61 2269 613341698 613343871 0.000000e+00 2867.0
6 TraesCS6B01G455300 chr6A 88.486 469 24 7 2453 2906 613343992 613344445 9.260000e-150 540.0
7 TraesCS6B01G455300 chr6A 99.057 106 1 0 2323 2428 613343890 613343995 1.070000e-44 191.0
8 TraesCS6B01G455300 chr6A 100.000 30 0 0 2907 2936 613344488 613344517 4.090000e-04 56.5
9 TraesCS6B01G455300 chr2D 86.907 1497 121 24 1073 2510 642989471 642990951 0.000000e+00 1609.0
10 TraesCS6B01G455300 chr2D 77.820 798 99 36 88 841 642988556 642989319 3.500000e-114 422.0
11 TraesCS6B01G455300 chr2D 83.088 136 8 12 2617 2745 642991262 642991389 3.090000e-20 110.0
12 TraesCS6B01G455300 chr2D 83.673 98 3 1 2526 2610 642991129 642991226 2.430000e-11 80.5
13 TraesCS6B01G455300 chrUn 86.301 1460 136 29 905 2331 31599835 31601263 0.000000e+00 1530.0
14 TraesCS6B01G455300 chrUn 75.396 695 84 39 40 688 31598910 31599563 3.750000e-64 255.0
15 TraesCS6B01G455300 chrUn 84.477 277 24 6 2246 2510 31601264 31601533 3.750000e-64 255.0
16 TraesCS6B01G455300 chrUn 85.714 161 20 2 684 841 31599667 31599827 1.810000e-37 167.0
17 TraesCS6B01G455300 chr2A 84.824 995 92 26 1561 2510 767944023 767945003 0.000000e+00 946.0
18 TraesCS6B01G455300 chr2A 90.405 667 49 6 905 1565 767943275 767943932 0.000000e+00 863.0
19 TraesCS6B01G455300 chr2A 76.006 696 80 42 40 688 767942267 767942922 2.230000e-71 279.0
20 TraesCS6B01G455300 chr4D 82.000 450 77 4 1079 1526 12599717 12599270 2.140000e-101 379.0
21 TraesCS6B01G455300 chr4B 81.579 456 82 2 1072 1526 22991613 22991159 2.760000e-100 375.0
22 TraesCS6B01G455300 chr4A 81.069 449 83 2 1079 1526 589878975 589879422 1.000000e-94 357.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G455300 chr6B 712250503 712253438 2935 False 5422.000000 5422 100.000000 1 2936 1 chr6B.!!$F1 2935
1 TraesCS6B01G455300 chr6D 467047753 467050772 3019 False 1229.333333 3197 89.118333 1 2906 3 chr6D.!!$F1 2905
2 TraesCS6B01G455300 chr6A 613341698 613344517 2819 False 913.625000 2867 94.507500 61 2936 4 chr6A.!!$F1 2875
3 TraesCS6B01G455300 chr2D 642988556 642991389 2833 False 555.375000 1609 82.872000 88 2745 4 chr2D.!!$F1 2657
4 TraesCS6B01G455300 chrUn 31598910 31601533 2623 False 551.750000 1530 82.972000 40 2510 4 chrUn.!!$F1 2470
5 TraesCS6B01G455300 chr2A 767942267 767945003 2736 False 696.000000 946 83.745000 40 2510 3 chr2A.!!$F1 2470

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 242 0.098376 CGAGGTACGAGGTTTCTCCG 59.902 60.0 0.00 0.0 45.77 4.63 F
227 248 0.240411 ACGAGGTTTCTCCGTCTTCG 59.760 55.0 0.00 0.0 41.99 3.79 F
1080 1397 0.452950 CTCACAAGGACGACGACGAG 60.453 60.0 15.32 0.0 42.66 4.18 F
1280 1597 1.338890 TTGGTGGAGGTGGACAACGA 61.339 55.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1080 1397 0.179124 CGTACTCCTTCTCAGCCTGC 60.179 60.0 0.0 0.0 0.00 4.85 R
1296 1613 0.320683 TGTTCATCAGGTCCACAGCG 60.321 55.0 0.0 0.0 0.00 5.18 R
1930 2379 0.603569 ACGCCGAGAACTCATCAGTT 59.396 50.0 0.0 0.0 46.21 3.16 R
2479 3107 0.700564 AAGATTCTCCAGCCAGGCAA 59.299 50.0 15.8 0.0 37.29 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.410400 CTTCCGTGGCCAGTCCCC 62.410 72.222 5.11 0.00 0.00 4.81
30 31 2.285368 TGGCCAGTCCCCTACAGG 60.285 66.667 0.00 0.00 37.80 4.00
221 242 0.098376 CGAGGTACGAGGTTTCTCCG 59.902 60.000 0.00 0.00 45.77 4.63
227 248 0.240411 ACGAGGTTTCTCCGTCTTCG 59.760 55.000 0.00 0.00 41.99 3.79
247 268 4.514577 CGGCGGTCAGGCTCGATT 62.515 66.667 0.00 0.00 44.22 3.34
299 320 3.592814 CGCCGTCTAGATCCGCCA 61.593 66.667 0.00 0.00 0.00 5.69
328 349 2.262915 GCTGTGACGACCTGGGAG 59.737 66.667 0.00 0.00 0.00 4.30
352 393 3.337834 TGCGAAGGCAGGATTTTGA 57.662 47.368 0.00 0.00 46.21 2.69
369 414 3.467374 TTGATTTTGCCTGTTTGGTCC 57.533 42.857 0.00 0.00 38.35 4.46
378 423 1.970917 CTGTTTGGTCCGAGCGATGC 61.971 60.000 0.00 0.00 0.00 3.91
401 446 3.814945 CCGAGCAATGTTCTTGAACTTC 58.185 45.455 13.65 4.59 0.00 3.01
417 462 2.875296 ACTTCTGCATGGGCTTTGTTA 58.125 42.857 0.00 0.00 41.91 2.41
418 463 2.821969 ACTTCTGCATGGGCTTTGTTAG 59.178 45.455 0.00 0.00 41.91 2.34
419 464 2.877097 TCTGCATGGGCTTTGTTAGA 57.123 45.000 0.00 0.00 41.91 2.10
432 490 8.315482 TGGGCTTTGTTAGACTTTTTAACTTTT 58.685 29.630 0.00 0.00 33.29 2.27
523 596 8.047310 ACAATTGTAGGTTCCTACTAATGGAAG 58.953 37.037 23.82 15.39 43.37 3.46
756 1053 4.227512 TGCTACACAATGCTTGTTCTTG 57.772 40.909 0.00 0.00 43.23 3.02
777 1077 2.866762 GTTCAGATGATGCCCTTACGAC 59.133 50.000 0.00 0.00 0.00 4.34
857 1158 7.846644 TTTTATAAATGCCTTTGATGCTTGG 57.153 32.000 0.00 0.00 0.00 3.61
914 1218 1.464687 GCGTCTTGCACAGTGCTTATG 60.465 52.381 25.83 16.23 45.31 1.90
924 1228 7.800155 TGCACAGTGCTTATGCTTAATTATA 57.200 32.000 25.83 0.00 45.31 0.98
925 1229 8.394971 TGCACAGTGCTTATGCTTAATTATAT 57.605 30.769 25.83 0.00 45.31 0.86
938 1242 9.739276 ATGCTTAATTATATTCCGAGGAAATCA 57.261 29.630 8.79 0.00 37.69 2.57
947 1255 2.503765 TCCGAGGAAATCACAGCCATTA 59.496 45.455 0.00 0.00 0.00 1.90
948 1256 2.614057 CCGAGGAAATCACAGCCATTAC 59.386 50.000 0.00 0.00 0.00 1.89
949 1257 3.270027 CGAGGAAATCACAGCCATTACA 58.730 45.455 0.00 0.00 0.00 2.41
950 1258 3.689161 CGAGGAAATCACAGCCATTACAA 59.311 43.478 0.00 0.00 0.00 2.41
983 1291 2.361789 TGCTAGGCGTTGTTATTTCCC 58.638 47.619 0.00 0.00 0.00 3.97
1043 1357 4.443598 GGATCAGAAGGACCAACAGGATAC 60.444 50.000 0.00 0.00 0.00 2.24
1077 1394 1.733399 GGCTCACAAGGACGACGAC 60.733 63.158 0.00 0.00 0.00 4.34
1078 1395 2.081212 GCTCACAAGGACGACGACG 61.081 63.158 5.58 5.58 45.75 5.12
1079 1396 1.572941 CTCACAAGGACGACGACGA 59.427 57.895 15.32 0.00 42.66 4.20
1080 1397 0.452950 CTCACAAGGACGACGACGAG 60.453 60.000 15.32 0.00 42.66 4.18
1280 1597 1.338890 TTGGTGGAGGTGGACAACGA 61.339 55.000 0.00 0.00 0.00 3.85
1323 1640 2.076863 GACCTGATGAACAACTTCCCG 58.923 52.381 0.00 0.00 0.00 5.14
1463 1780 2.624495 TCCAGGGTATGATGGGATGAG 58.376 52.381 0.00 0.00 37.19 2.90
1482 1799 2.290287 TAAGCTCAAGGGCCTCGCA 61.290 57.895 20.10 2.62 0.00 5.10
1575 1999 8.902540 TTCTTATTATGTACTTGTATGCCCAG 57.097 34.615 0.00 0.00 0.00 4.45
1604 2028 4.038883 AGAAAAGCTGCAAATCTTTCTGCT 59.961 37.500 1.02 0.00 39.38 4.24
1625 2062 9.787435 TCTGCTTTCCTTTACTTGTCTAAAATA 57.213 29.630 0.00 0.00 0.00 1.40
1656 2093 3.330701 ACTTGCTCAGGGAACAGGAAATA 59.669 43.478 0.00 0.00 0.00 1.40
1661 2098 5.136105 GCTCAGGGAACAGGAAATATCAAT 58.864 41.667 0.00 0.00 0.00 2.57
1698 2147 8.475331 AATTTTGATGATGATGCTGTTCTTTC 57.525 30.769 0.00 0.00 0.00 2.62
1703 2152 7.608153 TGATGATGATGCTGTTCTTTCAAATT 58.392 30.769 0.00 0.00 0.00 1.82
1704 2153 7.758076 TGATGATGATGCTGTTCTTTCAAATTC 59.242 33.333 0.00 0.00 0.00 2.17
1760 2209 6.906157 ATCCGAGCCATAATTTCATCAAAT 57.094 33.333 0.00 0.00 33.27 2.32
1860 2309 4.270084 GCAAGCAATAGCAAGTACGACATA 59.730 41.667 0.00 0.00 45.49 2.29
1902 2351 2.558378 GGGGACATTACTAAACTCGCC 58.442 52.381 0.00 0.00 0.00 5.54
1930 2379 2.024176 TAAGGTCAAGCTGGGAGACA 57.976 50.000 9.97 0.00 34.04 3.41
1946 2395 3.506810 GAGACAACTGATGAGTTCTCGG 58.493 50.000 0.00 0.00 40.68 4.63
1976 2429 3.408229 TCCCTCGGAGACTACGGT 58.592 61.111 7.36 0.00 0.00 4.83
1977 2430 1.222936 TCCCTCGGAGACTACGGTC 59.777 63.158 7.36 0.00 42.41 4.79
1978 2431 2.178890 CCCTCGGAGACTACGGTCG 61.179 68.421 7.36 0.00 46.29 4.79
1998 2451 0.801251 GTCACCAGTGCAAGCAGATC 59.199 55.000 0.00 0.00 0.00 2.75
2040 2494 2.196749 CAGTCGTAGATGTGATGGTGC 58.803 52.381 0.00 0.00 40.67 5.01
2066 2520 5.894298 AGTAATCATCCATTGGCTAGTCA 57.106 39.130 0.00 0.00 0.00 3.41
2069 2523 3.391506 TCATCCATTGGCTAGTCATCG 57.608 47.619 0.00 0.00 0.00 3.84
2073 2584 1.135046 CATTGGCTAGTCATCGAGCG 58.865 55.000 0.00 0.00 41.94 5.03
2177 2700 1.196808 GTTGATGGTACGCTTGGTGTG 59.803 52.381 0.00 0.00 0.00 3.82
2197 2720 7.882791 TGGTGTGATAACAATCTTTGTATGACT 59.117 33.333 0.00 0.00 44.59 3.41
2270 2794 4.216257 TCCTGTATTGCTTGAAACTTGCTC 59.784 41.667 0.00 0.00 0.00 4.26
2439 3067 2.287188 GCACATTGTCACAGTCACAAGG 60.287 50.000 0.00 0.00 40.54 3.61
2445 3073 0.036732 TCACAGTCACAAGGGCCATC 59.963 55.000 6.18 0.00 0.00 3.51
2452 3080 0.032813 CACAAGGGCCATCTTCCCAT 60.033 55.000 6.18 0.00 46.36 4.00
2479 3107 2.106684 GGAACACAGGAGAAGGAGGTTT 59.893 50.000 0.00 0.00 0.00 3.27
2498 3130 0.700564 TTGCCTGGCTGGAGAATCTT 59.299 50.000 21.03 0.00 38.35 2.40
2646 3499 2.828520 CACCTCCTCTCACTTTCTGCTA 59.171 50.000 0.00 0.00 0.00 3.49
2729 3688 2.601240 TGGAATCATCACCAGCCAAA 57.399 45.000 0.00 0.00 0.00 3.28
2757 3716 2.507058 TCCATCTATGCTTGCTTGTCCT 59.493 45.455 0.00 0.00 0.00 3.85
2807 3766 5.008019 ACACTCTGTTTCAAATGCAGTGTAG 59.992 40.000 8.48 2.30 40.86 2.74
2827 3786 8.603304 AGTGTAGACCTACCTTGTTTCAAATAT 58.397 33.333 4.88 0.00 35.26 1.28
2838 3797 7.086376 CCTTGTTTCAAATATTGTCAGGTCAG 58.914 38.462 0.00 0.00 0.00 3.51
2839 3798 7.040478 CCTTGTTTCAAATATTGTCAGGTCAGA 60.040 37.037 0.00 0.00 0.00 3.27
2843 3802 8.680903 GTTTCAAATATTGTCAGGTCAGATCAT 58.319 33.333 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 2.637640 GGGAGAGGGAGTGAGGGGA 61.638 68.421 0.00 0.00 0.00 4.81
136 150 1.878656 CGTCCAGGCGAGGAAAGACT 61.879 60.000 3.24 0.00 39.92 3.24
139 153 2.815647 GCGTCCAGGCGAGGAAAG 60.816 66.667 7.39 3.02 39.92 2.62
140 154 4.388499 GGCGTCCAGGCGAGGAAA 62.388 66.667 7.39 0.00 39.92 3.13
191 211 0.461339 CGTACCTCGAACCCAATGGG 60.461 60.000 18.46 18.46 45.37 4.00
192 212 0.533491 TCGTACCTCGAACCCAATGG 59.467 55.000 0.00 0.00 45.98 3.16
244 265 2.356069 GAGGTTCAGCGGGATTTGAATC 59.644 50.000 0.00 0.00 35.91 2.52
247 268 0.690192 TGAGGTTCAGCGGGATTTGA 59.310 50.000 0.00 0.00 0.00 2.69
328 349 2.246719 ATCCTGCCTTCGCAATCTAC 57.753 50.000 0.00 0.00 46.66 2.59
344 385 4.821260 ACCAAACAGGCAAAATCAAAATCC 59.179 37.500 0.00 0.00 43.14 3.01
351 392 1.611491 TCGGACCAAACAGGCAAAATC 59.389 47.619 0.00 0.00 43.14 2.17
352 393 1.613437 CTCGGACCAAACAGGCAAAAT 59.387 47.619 0.00 0.00 43.14 1.82
378 423 0.516877 TTCAAGAACATTGCTCGGCG 59.483 50.000 0.00 0.00 0.00 6.46
401 446 2.440409 AGTCTAACAAAGCCCATGCAG 58.560 47.619 0.00 0.00 41.13 4.41
417 462 4.885325 TCGGCAGGAAAAGTTAAAAAGTCT 59.115 37.500 0.00 0.00 0.00 3.24
418 463 5.177725 TCGGCAGGAAAAGTTAAAAAGTC 57.822 39.130 0.00 0.00 0.00 3.01
419 464 5.528870 CATCGGCAGGAAAAGTTAAAAAGT 58.471 37.500 0.00 0.00 0.00 2.66
432 490 0.461548 CTACTCAAGCATCGGCAGGA 59.538 55.000 0.00 0.00 44.61 3.86
472 537 1.311859 CACCTCAAACAGAGCAAGCA 58.688 50.000 0.00 0.00 43.31 3.91
553 638 2.706890 TGCGGGTTCAGTTTAGGATTC 58.293 47.619 0.00 0.00 0.00 2.52
756 1053 2.866762 GTCGTAAGGGCATCATCTGAAC 59.133 50.000 0.00 0.00 38.47 3.18
777 1077 3.543852 GCTGGCAAACATGAAAAACAACG 60.544 43.478 0.00 0.00 0.00 4.10
824 1124 7.453126 TCAAAGGCATTTATAAAAAGAGGTGGA 59.547 33.333 1.21 0.00 0.00 4.02
828 1128 7.983484 AGCATCAAAGGCATTTATAAAAAGAGG 59.017 33.333 1.21 0.00 0.00 3.69
857 1158 8.964420 TTACATTTATAAACAAACAGAGCTGC 57.036 30.769 0.00 0.00 0.00 5.25
914 1218 8.999431 TGTGATTTCCTCGGAATATAATTAAGC 58.001 33.333 0.00 0.00 33.79 3.09
924 1228 1.281867 TGGCTGTGATTTCCTCGGAAT 59.718 47.619 0.00 0.00 33.79 3.01
925 1229 0.690192 TGGCTGTGATTTCCTCGGAA 59.310 50.000 0.00 0.00 0.00 4.30
938 1242 3.055819 AGTCACTCGATTGTAATGGCTGT 60.056 43.478 2.44 0.00 0.00 4.40
947 1255 2.533266 AGCAACAGTCACTCGATTGT 57.467 45.000 2.44 0.00 43.35 2.71
948 1256 2.926200 CCTAGCAACAGTCACTCGATTG 59.074 50.000 0.00 0.00 35.12 2.67
949 1257 2.675317 GCCTAGCAACAGTCACTCGATT 60.675 50.000 0.00 0.00 0.00 3.34
950 1258 1.134965 GCCTAGCAACAGTCACTCGAT 60.135 52.381 0.00 0.00 0.00 3.59
983 1291 1.539929 CCATAGGAGCTTCCTTCTGCG 60.540 57.143 9.58 0.00 46.91 5.18
1043 1357 0.535102 AGCCTGTTGTTCGTCCTTGG 60.535 55.000 0.00 0.00 0.00 3.61
1077 1394 1.141449 CTCCTTCTCAGCCTGCTCG 59.859 63.158 0.00 0.00 0.00 5.03
1078 1395 1.136110 GTACTCCTTCTCAGCCTGCTC 59.864 57.143 0.00 0.00 0.00 4.26
1079 1396 1.190643 GTACTCCTTCTCAGCCTGCT 58.809 55.000 0.00 0.00 0.00 4.24
1080 1397 0.179124 CGTACTCCTTCTCAGCCTGC 60.179 60.000 0.00 0.00 0.00 4.85
1296 1613 0.320683 TGTTCATCAGGTCCACAGCG 60.321 55.000 0.00 0.00 0.00 5.18
1323 1640 2.203070 ATCCCGCCGAGCATGAAC 60.203 61.111 0.00 0.00 0.00 3.18
1407 1724 3.190118 CCCAGCTGAACTCAATCTTCAAC 59.810 47.826 17.39 0.00 0.00 3.18
1463 1780 1.815840 GCGAGGCCCTTGAGCTTAC 60.816 63.158 0.80 0.00 0.00 2.34
1482 1799 2.664402 TTTCTGCTTCTTGCCTCCTT 57.336 45.000 0.00 0.00 42.00 3.36
1575 1999 8.293157 AGAAAGATTTGCAGCTTTTCTTAGTAC 58.707 33.333 11.10 0.00 34.69 2.73
1625 2062 2.439507 TCCCTGAGCAAGTGTTTCTCTT 59.560 45.455 0.00 0.00 0.00 2.85
1629 2066 2.291741 CTGTTCCCTGAGCAAGTGTTTC 59.708 50.000 0.00 0.00 0.00 2.78
1698 2147 7.807907 AGGTTTAAAGCAACTGTATCGAATTTG 59.192 33.333 18.91 0.00 0.00 2.32
1703 2152 4.624024 CGAGGTTTAAAGCAACTGTATCGA 59.376 41.667 18.91 0.00 0.00 3.59
1704 2153 4.387862 ACGAGGTTTAAAGCAACTGTATCG 59.612 41.667 18.91 17.50 0.00 2.92
1760 2209 9.097257 GATTCTGAAACAAAATGGAGAACAAAA 57.903 29.630 0.00 0.00 0.00 2.44
1771 2220 9.485206 CTCTTCCAATTGATTCTGAAACAAAAT 57.515 29.630 15.55 6.69 0.00 1.82
1860 2309 2.095161 GTCGGTCATGAGTTTCTCGAGT 60.095 50.000 13.13 0.00 32.35 4.18
1902 2351 4.825546 CAGCTTGACCTTATAATGCTGG 57.174 45.455 0.00 1.63 41.59 4.85
1930 2379 0.603569 ACGCCGAGAACTCATCAGTT 59.396 50.000 0.00 0.00 46.21 3.16
1946 2395 1.448013 GAGGGAGGTGCTTGTACGC 60.448 63.158 0.00 0.00 0.00 4.42
1975 2428 2.607892 GCTTGCACTGGTGACCGAC 61.608 63.158 4.79 0.00 0.00 4.79
1976 2429 2.280797 GCTTGCACTGGTGACCGA 60.281 61.111 4.79 0.00 0.00 4.69
1977 2430 2.591429 TGCTTGCACTGGTGACCG 60.591 61.111 4.79 0.00 0.00 4.79
1978 2431 0.607489 ATCTGCTTGCACTGGTGACC 60.607 55.000 4.79 0.00 0.00 4.02
2022 2476 1.200483 CGCACCATCACATCTACGAC 58.800 55.000 0.00 0.00 0.00 4.34
2040 2494 6.634805 ACTAGCCAATGGATGATTACTATCG 58.365 40.000 2.05 0.00 33.23 2.92
2069 2523 1.060698 GCACCTAACAAATCGACGCTC 59.939 52.381 0.00 0.00 0.00 5.03
2073 2584 1.130561 GGCTGCACCTAACAAATCGAC 59.869 52.381 0.50 0.00 34.51 4.20
2177 2700 9.994432 CTTGGAAGTCATACAAAGATTGTTATC 57.006 33.333 0.54 0.00 42.22 1.75
2197 2720 2.288666 GCCGACATGATAAGCTTGGAA 58.711 47.619 9.86 0.00 0.00 3.53
2270 2794 1.983605 GCACCGACATAACCGATATCG 59.016 52.381 18.31 18.31 39.44 2.92
2418 3045 2.287188 CCTTGTGACTGTGACAATGTGC 60.287 50.000 13.05 0.00 32.96 4.57
2439 3067 1.396653 CAAGACATGGGAAGATGGCC 58.603 55.000 0.00 0.00 30.79 5.36
2452 3080 2.104792 CCTTCTCCTGTGTTCCAAGACA 59.895 50.000 0.00 0.00 0.00 3.41
2479 3107 0.700564 AAGATTCTCCAGCCAGGCAA 59.299 50.000 15.80 0.00 37.29 4.52
2646 3499 7.128883 ACCTGACACAATATTACCCCTAGAAAT 59.871 37.037 0.00 0.00 0.00 2.17
2707 3666 2.170166 TGGCTGGTGATGATTCCAAAC 58.830 47.619 0.00 0.00 33.06 2.93
2729 3688 3.137913 AGCAAGCATAGATGGAGACCAAT 59.862 43.478 0.00 0.00 36.95 3.16
2757 3716 5.492524 AGAAAAATCTGGGAAGATGGAGGTA 59.507 40.000 0.00 0.00 0.00 3.08
2807 3766 8.106247 TGACAATATTTGAAACAAGGTAGGTC 57.894 34.615 0.00 0.00 0.00 3.85
2838 3797 6.825721 ACTTTCCATTGAGGTTCAGTATGATC 59.174 38.462 0.00 0.00 40.31 2.92
2839 3798 6.725364 ACTTTCCATTGAGGTTCAGTATGAT 58.275 36.000 0.00 0.00 40.31 2.45
2843 3802 4.597507 AGGACTTTCCATTGAGGTTCAGTA 59.402 41.667 0.00 0.00 39.61 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.