Multiple sequence alignment - TraesCS6B01G454900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G454900 chr6B 100.000 3983 0 0 1 3983 712229289 712233271 0.000000e+00 7356.0
1 TraesCS6B01G454900 chr6D 91.488 2197 178 7 922 3111 467009981 467012175 0.000000e+00 3013.0
2 TraesCS6B01G454900 chr6D 89.047 913 75 11 1 889 467009077 467009988 0.000000e+00 1109.0
3 TraesCS6B01G454900 chr6D 87.315 473 43 5 2620 3083 467021675 467022139 3.530000e-145 525.0
4 TraesCS6B01G454900 chr6D 87.709 358 18 6 3291 3625 467022324 467022678 1.040000e-105 394.0
5 TraesCS6B01G454900 chr6D 85.283 265 24 6 3656 3913 467029109 467029365 3.950000e-65 259.0
6 TraesCS6B01G454900 chr6D 83.092 207 17 7 3707 3910 467012791 467012982 5.290000e-39 172.0
7 TraesCS6B01G454900 chr6D 90.244 123 12 0 3155 3277 467022138 467022260 1.150000e-35 161.0
8 TraesCS6B01G454900 chr6D 85.897 156 9 5 3291 3437 467012518 467012669 1.920000e-33 154.0
9 TraesCS6B01G454900 chr6A 89.646 2376 214 9 920 3285 613306046 613308399 0.000000e+00 2996.0
10 TraesCS6B01G454900 chr6A 88.880 2392 216 16 922 3285 613315124 613317493 0.000000e+00 2900.0
11 TraesCS6B01G454900 chr6A 89.647 2183 187 15 1120 3285 613322511 613324671 0.000000e+00 2743.0
12 TraesCS6B01G454900 chr6A 90.514 875 52 8 2421 3285 613312287 613313140 0.000000e+00 1127.0
13 TraesCS6B01G454900 chr6A 88.456 667 36 11 3291 3939 613308449 613309092 0.000000e+00 767.0
14 TraesCS6B01G454900 chr6A 88.456 667 36 11 3291 3939 613317543 613318186 0.000000e+00 767.0
15 TraesCS6B01G454900 chr6A 88.306 667 37 11 3291 3939 613324721 613325364 0.000000e+00 761.0
16 TraesCS6B01G454900 chr6A 85.358 642 73 12 2 643 613311643 613312263 0.000000e+00 645.0
17 TraesCS6B01G454900 chr6A 85.358 642 73 12 2 643 613320733 613321353 0.000000e+00 645.0
18 TraesCS6B01G454900 chr6A 83.857 700 78 15 2 688 613304999 613305676 5.620000e-178 634.0
19 TraesCS6B01G454900 chr6A 85.276 489 67 3 922 1410 613282829 613283312 2.140000e-137 499.0
20 TraesCS6B01G454900 chr6A 86.396 419 53 1 2 420 613275829 613276243 4.690000e-124 455.0
21 TraesCS6B01G454900 chrUn 85.358 642 73 12 2 643 328091685 328092305 0.000000e+00 645.0
22 TraesCS6B01G454900 chr5D 76.074 698 155 12 1922 2613 555191867 555192558 1.760000e-93 353.0
23 TraesCS6B01G454900 chr5A 80.335 239 39 5 3061 3296 462864863 462865096 1.470000e-39 174.0
24 TraesCS6B01G454900 chr2A 72.280 386 99 7 2121 2502 147537301 147536920 3.250000e-21 113.0
25 TraesCS6B01G454900 chr7B 96.491 57 2 0 3927 3983 706811038 706811094 1.180000e-15 95.3
26 TraesCS6B01G454900 chr7B 96.429 56 2 0 3928 3983 697607634 697607689 4.240000e-15 93.5
27 TraesCS6B01G454900 chr7B 93.333 60 3 1 3925 3983 536260538 536260597 1.970000e-13 87.9
28 TraesCS6B01G454900 chr4D 93.651 63 2 2 3923 3983 421420907 421420969 4.240000e-15 93.5
29 TraesCS6B01G454900 chr4D 89.552 67 3 4 3919 3983 298543580 298543516 9.170000e-12 82.4
30 TraesCS6B01G454900 chr3B 96.429 56 2 0 3928 3983 114602234 114602289 4.240000e-15 93.5
31 TraesCS6B01G454900 chr3D 94.737 57 3 0 3927 3983 603946265 603946209 5.480000e-14 89.8
32 TraesCS6B01G454900 chr2D 94.737 57 3 0 3927 3983 83963500 83963556 5.480000e-14 89.8
33 TraesCS6B01G454900 chr1B 96.296 54 1 1 3931 3983 34513271 34513218 1.970000e-13 87.9
34 TraesCS6B01G454900 chr7D 88.710 62 7 0 3224 3285 45211986 45211925 4.270000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G454900 chr6B 712229289 712233271 3982 False 7356.0 7356 100.000000 1 3983 1 chr6B.!!$F1 3982
1 TraesCS6B01G454900 chr6D 467009077 467012982 3905 False 1112.0 3013 87.381000 1 3910 4 chr6D.!!$F2 3909
2 TraesCS6B01G454900 chr6D 467021675 467022678 1003 False 360.0 525 88.422667 2620 3625 3 chr6D.!!$F3 1005
3 TraesCS6B01G454900 chr6A 613304999 613325364 20365 False 1398.5 2996 87.847800 2 3939 10 chr6A.!!$F3 3937
4 TraesCS6B01G454900 chrUn 328091685 328092305 620 False 645.0 645 85.358000 2 643 1 chrUn.!!$F1 641
5 TraesCS6B01G454900 chr5D 555191867 555192558 691 False 353.0 353 76.074000 1922 2613 1 chr5D.!!$F1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 877 0.033601 TATGAATTTGCCGCCCACCT 60.034 50.0 0.0 0.0 0.00 4.0 F
1798 11042 0.107643 GAAGCTAGATGGGGTGGCTC 59.892 60.0 0.0 0.0 32.46 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2310 11557 0.396139 AATCCAGGGTCGGCGTAGTA 60.396 55.0 6.85 0.0 0.0 1.82 R
3285 12701 0.409876 AGTCCACCAGAGCTCTACCA 59.590 55.0 17.75 0.0 0.0 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.065272 GGAGCCGGTGGTATGGTTAAA 60.065 52.381 1.90 0.00 0.00 1.52
31 32 5.816258 GTGGTATGGTTAAAGGAGACTAAGC 59.184 44.000 0.00 0.00 42.68 3.09
56 57 3.588955 TGACATCGATCTCAACAAGGTG 58.411 45.455 0.36 0.00 0.00 4.00
93 94 6.146347 AGTTGAGCTCGATTGTAAAGAAGAAC 59.854 38.462 7.00 1.42 0.00 3.01
101 102 5.696724 CGATTGTAAAGAAGAACTGGTCACT 59.303 40.000 0.00 0.00 0.00 3.41
159 160 1.455849 CTGGCCCTGAACCACTGAA 59.544 57.895 0.00 0.00 32.49 3.02
161 162 0.038166 TGGCCCTGAACCACTGAATC 59.962 55.000 0.00 0.00 30.29 2.52
205 206 0.603569 GGTGGAAGAGAGCACGAAGA 59.396 55.000 0.00 0.00 0.00 2.87
210 211 2.427453 GGAAGAGAGCACGAAGACCATA 59.573 50.000 0.00 0.00 0.00 2.74
222 223 0.399233 AGACCATACCAGGAGCTCCC 60.399 60.000 29.54 11.59 36.42 4.30
327 328 1.271840 AATCGAGGGGCCTGCTGTAA 61.272 55.000 0.84 0.00 0.00 2.41
404 405 0.613260 ATAGACGCTTGGCCACTCAA 59.387 50.000 3.88 0.00 0.00 3.02
411 412 1.242076 CTTGGCCACTCAACTTCAGG 58.758 55.000 3.88 0.00 0.00 3.86
486 487 4.806640 AAATGCATGGAGGTTAACAAGG 57.193 40.909 8.10 0.00 0.00 3.61
487 488 2.214376 TGCATGGAGGTTAACAAGGG 57.786 50.000 8.10 0.00 0.00 3.95
496 497 1.422402 GGTTAACAAGGGTGGTGAGGA 59.578 52.381 8.10 0.00 0.00 3.71
506 516 1.573108 GTGGTGAGGATGAGGAGGAA 58.427 55.000 0.00 0.00 0.00 3.36
538 548 5.760253 CCCATGTCCATAGTTGAGTTACATC 59.240 44.000 0.00 0.00 0.00 3.06
541 551 6.465439 TGTCCATAGTTGAGTTACATCGAT 57.535 37.500 0.00 0.00 0.00 3.59
542 552 6.273071 TGTCCATAGTTGAGTTACATCGATG 58.727 40.000 23.68 23.68 33.90 3.84
549 559 3.190079 TGAGTTACATCGATGCTGAAGC 58.810 45.455 25.11 10.92 42.50 3.86
574 585 4.249638 TGCCTGCTAATTAATGGAGGTT 57.750 40.909 12.90 0.00 42.67 3.50
620 631 5.237048 GCCCAAAAATGCTCAAGATAACAA 58.763 37.500 0.00 0.00 0.00 2.83
644 655 2.786965 ACTACAGCTGGCTGCAGTGAT 61.787 52.381 22.77 8.79 45.77 3.06
690 703 1.610038 TGGACTTCTTCTCGTTGCGTA 59.390 47.619 0.00 0.00 0.00 4.42
696 709 2.602878 TCTTCTCGTTGCGTATTGGAC 58.397 47.619 0.00 0.00 0.00 4.02
715 729 3.119849 GGACGGGAATGTGAACAGATTTG 60.120 47.826 0.00 0.00 0.00 2.32
719 733 3.119849 GGGAATGTGAACAGATTTGTCCG 60.120 47.826 0.00 0.00 36.23 4.79
747 781 2.158813 TGACAGTGAAACCTGGACTTCC 60.159 50.000 0.00 0.00 37.80 3.46
749 783 2.241176 ACAGTGAAACCTGGACTTCCAA 59.759 45.455 0.00 0.00 46.97 3.53
750 784 2.880890 CAGTGAAACCTGGACTTCCAAG 59.119 50.000 0.00 0.00 46.97 3.61
752 786 3.433740 AGTGAAACCTGGACTTCCAAGTC 60.434 47.826 10.52 10.52 46.97 3.01
821 877 0.033601 TATGAATTTGCCGCCCACCT 60.034 50.000 0.00 0.00 0.00 4.00
862 1051 0.896226 AGCACGACTTAACCTCCTCC 59.104 55.000 0.00 0.00 0.00 4.30
877 1066 4.721776 ACCTCCTCCATAGCACAGATTTTA 59.278 41.667 0.00 0.00 0.00 1.52
968 10195 1.556911 CCTTCACTCACTGCCCTACAT 59.443 52.381 0.00 0.00 0.00 2.29
1030 10257 1.899437 CTCTTTGCGCCCCTACCTCA 61.899 60.000 4.18 0.00 0.00 3.86
1048 10275 4.180057 CCTCATTGTTCTCTTCTTCCTCG 58.820 47.826 0.00 0.00 0.00 4.63
1074 10301 2.657237 GACCACCTCCACACCTCG 59.343 66.667 0.00 0.00 0.00 4.63
1092 10319 1.898154 GGGTGTCATCGCTGGTACT 59.102 57.895 0.00 0.00 0.00 2.73
1094 10321 1.067212 GGGTGTCATCGCTGGTACTAG 59.933 57.143 1.08 1.08 0.00 2.57
1137 10375 3.758755 TCAGCCGATATGAAGCTTGAT 57.241 42.857 2.10 2.79 33.70 2.57
1156 10394 3.831333 TGATGGCAAAGCTTTGTGGATAA 59.169 39.130 33.47 17.08 40.24 1.75
1162 10400 4.324402 GCAAAGCTTTGTGGATAAATGACG 59.676 41.667 33.47 9.56 40.24 4.35
1163 10401 3.764885 AGCTTTGTGGATAAATGACGC 57.235 42.857 0.00 0.00 0.00 5.19
1177 10415 0.386352 TGACGCGTTGAGTCTAACCG 60.386 55.000 15.53 3.93 39.24 4.44
1200 10438 2.747686 CCAGGTGGTACAAGCGGT 59.252 61.111 0.00 0.00 44.16 5.68
1230 10468 1.417890 TGCAGCTATCCCCTAAGCTTC 59.582 52.381 0.00 0.00 46.82 3.86
1234 10472 3.117888 CAGCTATCCCCTAAGCTTCCAAA 60.118 47.826 0.00 0.00 46.82 3.28
1237 10475 4.520874 GCTATCCCCTAAGCTTCCAAAATC 59.479 45.833 0.00 0.00 35.80 2.17
1245 10483 2.105766 AGCTTCCAAAATCATCCTGGC 58.894 47.619 0.00 0.00 0.00 4.85
1260 10498 3.299190 GGCGGCGCTATCTCCTCT 61.299 66.667 32.30 0.00 0.00 3.69
1269 10507 3.712187 CGCTATCTCCTCTTTCTCAACC 58.288 50.000 0.00 0.00 0.00 3.77
1324 10562 0.474184 AGGTAATGGGATGGCCTTCG 59.526 55.000 12.20 0.00 0.00 3.79
1382 10620 2.359967 GCGAGTACCTTGGCCTCCT 61.360 63.158 3.32 0.00 0.00 3.69
1383 10621 1.817209 CGAGTACCTTGGCCTCCTC 59.183 63.158 3.32 0.00 0.00 3.71
1384 10622 0.684805 CGAGTACCTTGGCCTCCTCT 60.685 60.000 3.32 0.00 0.00 3.69
1394 10632 4.039852 CCTTGGCCTCCTCTATTCTAACTC 59.960 50.000 3.32 0.00 0.00 3.01
1406 10644 4.785346 ATTCTAACTCAGATGGCCATGT 57.215 40.909 26.56 18.30 31.77 3.21
1416 10654 1.474077 GATGGCCATGTTTTCTTCGCT 59.526 47.619 26.56 0.00 0.00 4.93
1451 10689 4.026744 ACCTTCTTGAATCCTGAGATCGA 58.973 43.478 0.00 0.00 0.00 3.59
1452 10690 4.653341 ACCTTCTTGAATCCTGAGATCGAT 59.347 41.667 0.00 0.00 0.00 3.59
1496 10734 2.821969 GGATTGATGTCAACAGCTTGGT 59.178 45.455 0.00 0.00 38.86 3.67
1509 10747 3.181451 ACAGCTTGGTCTCAGTTGAATCA 60.181 43.478 0.00 0.00 0.00 2.57
1510 10748 3.817084 CAGCTTGGTCTCAGTTGAATCAA 59.183 43.478 0.00 0.00 0.00 2.57
1528 10766 4.771590 TCAAAAACTGCTGGCTTCTATG 57.228 40.909 0.00 0.00 0.00 2.23
1532 10770 4.826274 AAACTGCTGGCTTCTATGACTA 57.174 40.909 0.00 0.00 0.00 2.59
1534 10772 3.099905 ACTGCTGGCTTCTATGACTACA 58.900 45.455 0.00 0.00 0.00 2.74
1535 10773 3.708631 ACTGCTGGCTTCTATGACTACAT 59.291 43.478 0.00 0.00 40.16 2.29
1539 10780 2.035961 TGGCTTCTATGACTACATCGGC 59.964 50.000 0.00 0.00 37.87 5.54
1584 10825 1.732917 CGGCAAACCAGTTCAAGCA 59.267 52.632 0.00 0.00 34.57 3.91
1617 10858 4.486125 TGATAGCAAATCACACCAGCTA 57.514 40.909 0.00 0.00 41.46 3.32
1638 10879 4.440839 AAATGTTACCTTAGCAGCTTGC 57.559 40.909 0.00 0.00 45.46 4.01
1684 10928 1.071605 GCTGTCGACCACTGTCAATC 58.928 55.000 14.12 0.00 41.85 2.67
1686 10930 2.332104 CTGTCGACCACTGTCAATCTG 58.668 52.381 14.12 0.00 41.85 2.90
1752 10996 0.324285 CCAGCAGCAAAGTCTCCTCT 59.676 55.000 0.00 0.00 0.00 3.69
1753 10997 1.440708 CAGCAGCAAAGTCTCCTCTG 58.559 55.000 0.00 0.00 0.00 3.35
1754 10998 1.001746 CAGCAGCAAAGTCTCCTCTGA 59.998 52.381 0.00 0.00 0.00 3.27
1798 11042 0.107643 GAAGCTAGATGGGGTGGCTC 59.892 60.000 0.00 0.00 32.46 4.70
1813 11057 1.765904 TGGCTCAACCACTTGACTACA 59.234 47.619 0.00 0.00 46.36 2.74
1816 11060 3.060602 GCTCAACCACTTGACTACACTC 58.939 50.000 0.00 0.00 32.68 3.51
1818 11062 4.022242 GCTCAACCACTTGACTACACTCTA 60.022 45.833 0.00 0.00 32.68 2.43
1819 11063 5.336849 GCTCAACCACTTGACTACACTCTAT 60.337 44.000 0.00 0.00 32.68 1.98
1821 11065 6.455647 TCAACCACTTGACTACACTCTATTG 58.544 40.000 0.00 0.00 31.00 1.90
1824 11068 4.322725 CCACTTGACTACACTCTATTGCCA 60.323 45.833 0.00 0.00 0.00 4.92
1843 11087 1.473677 CATTTGGCGCTGGAGATGAAA 59.526 47.619 7.64 0.00 0.00 2.69
1844 11088 0.881118 TTTGGCGCTGGAGATGAAAC 59.119 50.000 7.64 0.00 0.00 2.78
1847 11091 1.424493 GGCGCTGGAGATGAAACTCG 61.424 60.000 7.64 0.00 37.74 4.18
1848 11092 0.737715 GCGCTGGAGATGAAACTCGT 60.738 55.000 0.00 0.00 37.74 4.18
1849 11093 0.994995 CGCTGGAGATGAAACTCGTG 59.005 55.000 0.00 0.00 37.74 4.35
1851 11095 2.688507 GCTGGAGATGAAACTCGTGAA 58.311 47.619 0.00 0.00 37.74 3.18
1852 11096 2.670414 GCTGGAGATGAAACTCGTGAAG 59.330 50.000 0.00 0.00 37.74 3.02
1866 11110 4.753233 CTCGTGAAGAGTCCAAATCTGAT 58.247 43.478 0.00 0.00 41.99 2.90
1867 11111 4.498241 TCGTGAAGAGTCCAAATCTGATG 58.502 43.478 0.00 0.00 0.00 3.07
1870 11114 5.869344 CGTGAAGAGTCCAAATCTGATGTTA 59.131 40.000 0.00 0.00 0.00 2.41
1873 11117 6.013379 TGAAGAGTCCAAATCTGATGTTACCT 60.013 38.462 0.00 0.00 0.00 3.08
1876 11120 6.214412 AGAGTCCAAATCTGATGTTACCTTCT 59.786 38.462 0.00 0.00 0.00 2.85
1905 11152 3.627395 AAAGGAGTGCCATCGATTGTA 57.373 42.857 0.00 0.00 36.29 2.41
1907 11154 2.111384 AGGAGTGCCATCGATTGTACT 58.889 47.619 18.06 18.06 36.29 2.73
1908 11155 2.159043 AGGAGTGCCATCGATTGTACTG 60.159 50.000 21.97 0.00 36.29 2.74
1909 11156 2.418746 GGAGTGCCATCGATTGTACTGT 60.419 50.000 21.97 2.48 0.00 3.55
1910 11157 3.262420 GAGTGCCATCGATTGTACTGTT 58.738 45.455 21.97 1.81 0.00 3.16
1915 11162 4.159693 TGCCATCGATTGTACTGTTAGTCT 59.840 41.667 0.00 0.00 0.00 3.24
1953 11200 6.405278 TTTATTCTGATCTGTCGGCATCTA 57.595 37.500 0.00 0.00 0.00 1.98
2001 11248 2.576615 GAGATAAAGTGTGGGATGCCC 58.423 52.381 0.00 0.00 45.71 5.36
2019 11266 3.266772 TGCCCTCTTTCACATACAAGGAT 59.733 43.478 0.00 0.00 0.00 3.24
2023 11270 6.284459 CCCTCTTTCACATACAAGGATCTAC 58.716 44.000 0.00 0.00 0.00 2.59
2097 11344 1.987368 GGAAGGGTGTACAAAGGGGTA 59.013 52.381 0.00 0.00 0.00 3.69
2104 11351 2.059490 TGTACAAAGGGGTACTGCCTT 58.941 47.619 0.00 0.00 43.17 4.35
2166 11413 1.780309 TCAAAGCAGGGGAAGAAGGAA 59.220 47.619 0.00 0.00 0.00 3.36
2211 11458 1.748879 CCATGTCCGCCACCGAAAT 60.749 57.895 0.00 0.00 36.29 2.17
2310 11557 6.992715 GCCTTGATAGGTACTTGTATGACAAT 59.007 38.462 0.00 0.00 44.00 2.71
2520 11767 3.118454 GTCGATGCCCACACCACG 61.118 66.667 0.00 0.00 0.00 4.94
2604 11851 1.314581 CGACCGACGTTTTTGCATTC 58.685 50.000 0.00 0.00 37.22 2.67
2695 11942 2.111043 CGCTGGCGGATTGGGTAT 59.889 61.111 7.12 0.00 35.56 2.73
2794 12042 0.395586 TGTGCTGAAGCTTGGGTTGT 60.396 50.000 2.10 0.00 42.66 3.32
3070 12334 2.796483 TTAACCTGCTGGATGCGCGT 62.796 55.000 17.64 0.00 46.63 6.01
3130 12396 2.106938 TGGCTAATCCAGAGCGCG 59.893 61.111 0.00 0.00 40.72 6.86
3131 12397 2.107141 GGCTAATCCAGAGCGCGT 59.893 61.111 8.43 0.00 41.06 6.01
3132 12398 2.240500 GGCTAATCCAGAGCGCGTG 61.241 63.158 8.43 3.38 41.06 5.34
3133 12399 2.240500 GCTAATCCAGAGCGCGTGG 61.241 63.158 22.06 22.06 36.28 4.94
3134 12400 1.141881 CTAATCCAGAGCGCGTGGT 59.858 57.895 25.45 13.80 36.37 4.16
3175 12585 1.080772 CGCTTGCGTGGTAGAGTCA 60.081 57.895 6.86 0.00 0.00 3.41
3176 12586 0.458543 CGCTTGCGTGGTAGAGTCAT 60.459 55.000 6.86 0.00 0.00 3.06
3177 12587 1.281899 GCTTGCGTGGTAGAGTCATC 58.718 55.000 0.00 0.00 0.00 2.92
3178 12588 1.550065 CTTGCGTGGTAGAGTCATCG 58.450 55.000 0.00 0.00 0.00 3.84
3179 12589 0.172578 TTGCGTGGTAGAGTCATCGG 59.827 55.000 0.00 0.00 0.00 4.18
3180 12590 1.589196 GCGTGGTAGAGTCATCGGC 60.589 63.158 0.00 0.00 0.00 5.54
3181 12591 1.065928 CGTGGTAGAGTCATCGGCC 59.934 63.158 0.00 0.00 0.00 6.13
3182 12592 1.442148 GTGGTAGAGTCATCGGCCC 59.558 63.158 0.00 0.00 0.00 5.80
3248 12658 2.544698 CGGTTTTCGGCCGGTTTCA 61.545 57.895 27.83 1.12 44.98 2.69
3259 12669 1.129811 GCCGGTTTCACTTATTGACCG 59.870 52.381 1.90 6.27 41.47 4.79
3277 12693 3.929610 GACCGGTCAATTCTCTTCTTCTG 59.070 47.826 29.75 0.00 0.00 3.02
3285 12701 9.171877 GGTCAATTCTCTTCTTCTGTATGAAAT 57.828 33.333 0.00 0.00 33.79 2.17
3310 12770 0.107456 AGCTCTGGTGGACTTGTGTG 59.893 55.000 0.00 0.00 0.00 3.82
3379 12847 4.815846 AGAATGAAATTTGTTGGCACAACC 59.184 37.500 13.35 1.13 42.87 3.77
3401 12869 4.321230 CCCAGAAACAAATTGGACACTAGC 60.321 45.833 0.00 0.00 33.76 3.42
3428 12896 4.039609 ACTGATGATAATGTCAGATCCGCA 59.960 41.667 9.15 0.00 43.50 5.69
3437 12905 3.067106 TGTCAGATCCGCAGTTCTTTTC 58.933 45.455 0.00 0.00 0.00 2.29
3442 12910 1.438710 CCGCAGTTCTTTTCGCACG 60.439 57.895 0.00 0.00 0.00 5.34
3456 12924 2.735823 TCGCACGAGATCAGATTCATG 58.264 47.619 0.00 0.00 0.00 3.07
3563 20209 3.732212 TCATACATGCATACTGACTGCC 58.268 45.455 0.00 0.00 38.89 4.85
3608 20254 2.229302 GTCAGCTGAGACGGTTACTCTT 59.771 50.000 18.89 0.00 35.66 2.85
3618 20264 7.201145 TGAGACGGTTACTCTTTATTATCAGC 58.799 38.462 0.00 0.00 35.66 4.26
3640 20286 6.698329 CAGCTTTCATTTTCTGTCATGTCAAA 59.302 34.615 0.00 0.00 0.00 2.69
3672 20318 8.597662 AGTTTCAATTTTCTGTGAAATGATGG 57.402 30.769 2.50 0.00 43.56 3.51
3679 20325 6.914654 TTTCTGTGAAATGATGGAATTGGA 57.085 33.333 0.00 0.00 0.00 3.53
3790 20436 2.353704 CCAGAAGTGGCACTATCGTTGA 60.354 50.000 22.37 0.00 36.89 3.18
3793 20439 2.604046 AGTGGCACTATCGTTGATCC 57.396 50.000 20.61 0.00 0.00 3.36
3794 20440 2.111384 AGTGGCACTATCGTTGATCCT 58.889 47.619 20.61 0.00 0.00 3.24
3795 20441 3.296854 AGTGGCACTATCGTTGATCCTA 58.703 45.455 20.61 0.00 0.00 2.94
3846 20492 3.002965 GGGAAAATGCCGGTCTAATTACG 59.997 47.826 1.90 0.00 0.00 3.18
3878 20534 0.875059 GTGCAGTTGTCCCTTGCTAC 59.125 55.000 0.00 0.00 38.60 3.58
3939 20596 6.176014 AGCAAAACTCCTACCATATACTCC 57.824 41.667 0.00 0.00 0.00 3.85
3940 20597 5.071923 AGCAAAACTCCTACCATATACTCCC 59.928 44.000 0.00 0.00 0.00 4.30
3941 20598 5.071923 GCAAAACTCCTACCATATACTCCCT 59.928 44.000 0.00 0.00 0.00 4.20
3942 20599 6.741801 GCAAAACTCCTACCATATACTCCCTC 60.742 46.154 0.00 0.00 0.00 4.30
3943 20600 4.678538 ACTCCTACCATATACTCCCTCC 57.321 50.000 0.00 0.00 0.00 4.30
3944 20601 3.010361 ACTCCTACCATATACTCCCTCCG 59.990 52.174 0.00 0.00 0.00 4.63
3945 20602 2.991713 TCCTACCATATACTCCCTCCGT 59.008 50.000 0.00 0.00 0.00 4.69
3946 20603 3.400322 TCCTACCATATACTCCCTCCGTT 59.600 47.826 0.00 0.00 0.00 4.44
3947 20604 3.762823 CCTACCATATACTCCCTCCGTTC 59.237 52.174 0.00 0.00 0.00 3.95
3948 20605 2.606378 ACCATATACTCCCTCCGTTCC 58.394 52.381 0.00 0.00 0.00 3.62
3949 20606 2.090943 ACCATATACTCCCTCCGTTCCA 60.091 50.000 0.00 0.00 0.00 3.53
3950 20607 2.969950 CCATATACTCCCTCCGTTCCAA 59.030 50.000 0.00 0.00 0.00 3.53
3951 20608 3.389983 CCATATACTCCCTCCGTTCCAAA 59.610 47.826 0.00 0.00 0.00 3.28
3952 20609 4.141574 CCATATACTCCCTCCGTTCCAAAA 60.142 45.833 0.00 0.00 0.00 2.44
3953 20610 5.456186 CCATATACTCCCTCCGTTCCAAAAT 60.456 44.000 0.00 0.00 0.00 1.82
3954 20611 6.239772 CCATATACTCCCTCCGTTCCAAAATA 60.240 42.308 0.00 0.00 0.00 1.40
3955 20612 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3956 20613 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3957 20614 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3958 20615 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3959 20616 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3960 20617 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3961 20618 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
3962 20619 5.186198 CCTCCGTTCCAAAATAGATGACTT 58.814 41.667 0.00 0.00 0.00 3.01
3963 20620 6.346096 CCTCCGTTCCAAAATAGATGACTTA 58.654 40.000 0.00 0.00 0.00 2.24
3964 20621 6.821665 CCTCCGTTCCAAAATAGATGACTTAA 59.178 38.462 0.00 0.00 0.00 1.85
3965 20622 7.201617 CCTCCGTTCCAAAATAGATGACTTAAC 60.202 40.741 0.00 0.00 0.00 2.01
3966 20623 7.391620 TCCGTTCCAAAATAGATGACTTAACT 58.608 34.615 0.00 0.00 0.00 2.24
3967 20624 7.881232 TCCGTTCCAAAATAGATGACTTAACTT 59.119 33.333 0.00 0.00 0.00 2.66
3968 20625 8.512138 CCGTTCCAAAATAGATGACTTAACTTT 58.488 33.333 0.00 0.00 0.00 2.66
3969 20626 9.329913 CGTTCCAAAATAGATGACTTAACTTTG 57.670 33.333 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.220821 TCGATGTCAAAAGCTTAGTCTCCT 59.779 41.667 0.00 0.00 0.00 3.69
31 32 5.180117 ACCTTGTTGAGATCGATGTCAAAAG 59.820 40.000 32.20 30.13 41.00 2.27
56 57 2.924290 GAGCTCAACTACATCAACGACC 59.076 50.000 9.40 0.00 0.00 4.79
93 94 1.071385 AGCTCCAACTCAAGTGACCAG 59.929 52.381 0.00 0.00 0.00 4.00
101 102 3.402628 GAGGTAACAGCTCCAACTCAA 57.597 47.619 0.00 0.00 36.78 3.02
125 126 1.340017 GCCAGCTGGGTTTCACTGATA 60.340 52.381 33.46 0.00 39.65 2.15
205 206 1.762460 CGGGAGCTCCTGGTATGGT 60.762 63.158 31.17 0.00 38.76 3.55
210 211 4.787280 CCCTCGGGAGCTCCTGGT 62.787 72.222 36.01 0.00 42.72 4.00
222 223 1.672356 CACCACTGAAAGCCCCTCG 60.672 63.158 0.00 0.00 37.60 4.63
327 328 2.556114 CCTGACAGAAGGGGATGCTTTT 60.556 50.000 3.32 0.00 33.28 2.27
404 405 4.745172 GCTTCTCTGAGGAAAACCTGAAGT 60.745 45.833 4.59 0.00 34.12 3.01
411 412 4.074970 TCAATGGCTTCTCTGAGGAAAAC 58.925 43.478 4.59 0.00 0.00 2.43
420 421 4.840716 ACTCATCTTCAATGGCTTCTCT 57.159 40.909 0.00 0.00 0.00 3.10
485 486 1.341156 CCTCCTCATCCTCACCACCC 61.341 65.000 0.00 0.00 0.00 4.61
486 487 0.325671 TCCTCCTCATCCTCACCACC 60.326 60.000 0.00 0.00 0.00 4.61
487 488 1.573108 TTCCTCCTCATCCTCACCAC 58.427 55.000 0.00 0.00 0.00 4.16
549 559 5.948162 ACCTCCATTAATTAGCAGGCATATG 59.052 40.000 0.00 0.00 0.00 1.78
574 585 0.112995 ACAATTTCTGGGCTCCTGCA 59.887 50.000 0.00 0.00 41.91 4.41
620 631 0.397941 TGCAGCCAGCTGTAGTCTTT 59.602 50.000 20.11 0.00 45.24 2.52
644 655 2.645730 GTTTGCAACCACACACTTGA 57.354 45.000 0.00 0.00 0.00 3.02
664 675 4.377841 GCAACGAGAAGAAGTCCAAGATTG 60.378 45.833 0.00 0.00 0.00 2.67
690 703 2.039746 TCTGTTCACATTCCCGTCCAAT 59.960 45.455 0.00 0.00 0.00 3.16
696 709 3.119849 GGACAAATCTGTTCACATTCCCG 60.120 47.826 0.00 0.00 35.30 5.14
700 713 5.003160 TGATCGGACAAATCTGTTCACATT 58.997 37.500 0.00 0.00 35.76 2.71
701 714 4.578871 TGATCGGACAAATCTGTTCACAT 58.421 39.130 0.00 0.00 35.76 3.21
715 729 4.378459 GGTTTCACTGTCAATTGATCGGAC 60.378 45.833 12.12 0.00 0.00 4.79
719 733 4.761739 TCCAGGTTTCACTGTCAATTGATC 59.238 41.667 12.12 6.28 36.75 2.92
747 781 2.720758 CGACTTGAGCGGCGACTTG 61.721 63.158 12.98 4.94 0.00 3.16
749 783 3.612371 GACGACTTGAGCGGCGACT 62.612 63.158 12.98 7.43 0.00 4.18
750 784 3.173240 GACGACTTGAGCGGCGAC 61.173 66.667 12.98 4.01 0.00 5.19
756 790 4.070552 AGCCCCGACGACTTGAGC 62.071 66.667 0.00 0.00 0.00 4.26
814 870 0.251787 AGGTGATTTTCCAGGTGGGC 60.252 55.000 0.00 0.00 36.21 5.36
821 877 5.475564 GCTGGTAAGTTTAGGTGATTTTCCA 59.524 40.000 0.00 0.00 0.00 3.53
922 1111 9.765795 GAAACACTGAAGCAGTTAGGTATATAT 57.234 33.333 0.00 0.00 42.59 0.86
923 1112 8.202137 GGAAACACTGAAGCAGTTAGGTATATA 58.798 37.037 0.00 0.00 42.59 0.86
924 1113 7.048512 GGAAACACTGAAGCAGTTAGGTATAT 58.951 38.462 0.00 0.00 42.59 0.86
926 1115 5.013183 AGGAAACACTGAAGCAGTTAGGTAT 59.987 40.000 0.00 0.00 42.59 2.73
932 1121 3.378427 GTGAAGGAAACACTGAAGCAGTT 59.622 43.478 0.00 0.00 42.59 3.16
968 10195 9.162764 CAAAGAGGTAAATTAACTAGCTTGCTA 57.837 33.333 0.00 2.19 0.00 3.49
1007 10234 0.460459 GTAGGGGCGCAAAGAGAGAC 60.460 60.000 10.83 0.00 0.00 3.36
1016 10243 1.847798 AACAATGAGGTAGGGGCGCA 61.848 55.000 10.83 0.00 0.00 6.09
1030 10257 3.835395 AGACCGAGGAAGAAGAGAACAAT 59.165 43.478 0.00 0.00 0.00 2.71
1074 10301 1.067212 CTAGTACCAGCGATGACACCC 59.933 57.143 0.06 0.00 0.00 4.61
1080 10307 1.678627 AGCTCACTAGTACCAGCGATG 59.321 52.381 12.60 0.00 36.95 3.84
1092 10319 4.483950 AGCCATTATAGACCAGCTCACTA 58.516 43.478 0.00 0.00 0.00 2.74
1094 10321 3.760580 AGCCATTATAGACCAGCTCAC 57.239 47.619 0.00 0.00 0.00 3.51
1122 10360 4.534168 CTTTGCCATCAAGCTTCATATCG 58.466 43.478 0.00 0.00 33.12 2.92
1126 10364 2.176889 AGCTTTGCCATCAAGCTTCAT 58.823 42.857 0.00 0.00 35.00 2.57
1137 10375 4.282957 TCATTTATCCACAAAGCTTTGCCA 59.717 37.500 33.72 20.34 41.79 4.92
1156 10394 2.334838 GGTTAGACTCAACGCGTCATT 58.665 47.619 14.44 0.00 33.89 2.57
1162 10400 1.278238 CCATCGGTTAGACTCAACGC 58.722 55.000 0.00 0.00 0.00 4.84
1163 10401 1.278238 GCCATCGGTTAGACTCAACG 58.722 55.000 0.00 0.00 0.00 4.10
1177 10415 0.394352 CTTGTACCACCTGGGCCATC 60.394 60.000 6.72 0.00 42.05 3.51
1215 10453 5.694995 TGATTTTGGAAGCTTAGGGGATAG 58.305 41.667 0.00 0.00 0.00 2.08
1230 10468 1.438814 GCCGCCAGGATGATTTTGG 59.561 57.895 0.00 0.00 39.69 3.28
1234 10472 2.116983 ATAGCGCCGCCAGGATGATT 62.117 55.000 4.98 0.00 39.69 2.57
1237 10475 2.740055 GATAGCGCCGCCAGGATG 60.740 66.667 4.98 0.00 41.02 3.51
1245 10483 0.671251 AGAAAGAGGAGATAGCGCCG 59.329 55.000 2.29 0.00 39.22 6.46
1260 10498 4.506886 AAACACAAACGTGGTTGAGAAA 57.493 36.364 4.36 0.00 42.73 2.52
1269 10507 2.458951 CCCATGACAAACACAAACGTG 58.541 47.619 0.00 0.00 40.42 4.49
1324 10562 4.273148 AGTCACTGGTGGATGAAAGTAC 57.727 45.455 0.70 0.00 0.00 2.73
1382 10620 5.604231 ACATGGCCATCTGAGTTAGAATAGA 59.396 40.000 17.61 0.00 39.30 1.98
1383 10621 5.862845 ACATGGCCATCTGAGTTAGAATAG 58.137 41.667 17.61 1.41 39.30 1.73
1384 10622 5.894298 ACATGGCCATCTGAGTTAGAATA 57.106 39.130 17.61 0.00 39.30 1.75
1394 10632 2.733227 GCGAAGAAAACATGGCCATCTG 60.733 50.000 17.61 10.51 0.00 2.90
1432 10670 5.127682 TGTCATCGATCTCAGGATTCAAGAA 59.872 40.000 0.00 0.00 31.46 2.52
1451 10689 3.877559 ACATGGTTGTCATCGATGTCAT 58.122 40.909 22.80 16.41 32.92 3.06
1452 10690 3.333029 ACATGGTTGTCATCGATGTCA 57.667 42.857 24.09 21.60 32.92 3.58
1509 10747 4.401925 AGTCATAGAAGCCAGCAGTTTTT 58.598 39.130 0.00 0.00 0.00 1.94
1510 10748 4.026356 AGTCATAGAAGCCAGCAGTTTT 57.974 40.909 0.00 0.00 0.00 2.43
1528 10766 0.454600 TGGAACTCGCCGATGTAGTC 59.545 55.000 0.00 0.00 0.00 2.59
1532 10770 0.953960 GGTTTGGAACTCGCCGATGT 60.954 55.000 0.00 0.00 0.00 3.06
1534 10772 0.035439 ATGGTTTGGAACTCGCCGAT 60.035 50.000 0.00 0.00 0.00 4.18
1535 10773 0.250553 AATGGTTTGGAACTCGCCGA 60.251 50.000 0.00 0.00 0.00 5.54
1539 10780 4.062293 TGAGTACAATGGTTTGGAACTCG 58.938 43.478 13.80 0.00 44.62 4.18
1584 10825 5.073554 TGATTTGCTATCATAGTCCACCCAT 59.926 40.000 0.00 0.00 0.00 4.00
1617 10858 4.440839 GCAAGCTGCTAAGGTAACATTT 57.559 40.909 0.90 0.00 40.96 2.32
1633 10874 3.206964 GGGGTTTAGAGATACAGCAAGC 58.793 50.000 0.00 0.00 0.00 4.01
1638 10879 5.429130 GGAAGTTGGGGTTTAGAGATACAG 58.571 45.833 0.00 0.00 0.00 2.74
1684 10928 2.874701 CCAGTGACAACAAAGAGGACAG 59.125 50.000 0.00 0.00 0.00 3.51
1686 10930 2.222027 CCCAGTGACAACAAAGAGGAC 58.778 52.381 0.00 0.00 0.00 3.85
1716 10960 1.300963 GGATGCAGAGAACCCAGCA 59.699 57.895 0.00 0.00 41.73 4.41
1740 10984 5.738909 ACATAATGGTCAGAGGAGACTTTG 58.261 41.667 0.00 0.00 44.43 2.77
1752 10996 4.037222 TCCAGCCTAGAACATAATGGTCA 58.963 43.478 0.00 0.00 36.30 4.02
1753 10997 4.101741 ACTCCAGCCTAGAACATAATGGTC 59.898 45.833 0.00 0.00 33.32 4.02
1754 10998 4.040755 ACTCCAGCCTAGAACATAATGGT 58.959 43.478 0.00 0.00 0.00 3.55
1798 11042 5.120830 GCAATAGAGTGTAGTCAAGTGGTTG 59.879 44.000 0.00 0.00 34.67 3.77
1824 11068 1.474077 GTTTCATCTCCAGCGCCAAAT 59.526 47.619 2.29 0.00 0.00 2.32
1831 11075 2.370281 TCACGAGTTTCATCTCCAGC 57.630 50.000 0.00 0.00 0.00 4.85
1844 11088 4.179926 TCAGATTTGGACTCTTCACGAG 57.820 45.455 0.00 0.00 45.56 4.18
1847 11091 6.092807 GGTAACATCAGATTTGGACTCTTCAC 59.907 42.308 0.00 0.00 0.00 3.18
1848 11092 6.013379 AGGTAACATCAGATTTGGACTCTTCA 60.013 38.462 0.00 0.00 41.41 3.02
1849 11093 6.410540 AGGTAACATCAGATTTGGACTCTTC 58.589 40.000 0.00 0.00 41.41 2.87
1851 11095 6.214412 AGAAGGTAACATCAGATTTGGACTCT 59.786 38.462 0.00 0.00 36.56 3.24
1852 11096 6.410540 AGAAGGTAACATCAGATTTGGACTC 58.589 40.000 0.00 0.00 36.56 3.36
1870 11114 7.567622 TGGCACTCCTTTAACTATATAGAAGGT 59.432 37.037 20.31 7.08 38.38 3.50
1873 11117 8.304596 CGATGGCACTCCTTTAACTATATAGAA 58.695 37.037 16.79 1.38 0.00 2.10
1876 11120 7.770366 TCGATGGCACTCCTTTAACTATATA 57.230 36.000 0.00 0.00 0.00 0.86
1881 11125 3.914426 ATCGATGGCACTCCTTTAACT 57.086 42.857 0.00 0.00 0.00 2.24
1882 11126 3.689649 ACAATCGATGGCACTCCTTTAAC 59.310 43.478 0.00 0.00 0.00 2.01
1885 11132 2.496899 ACAATCGATGGCACTCCTTT 57.503 45.000 0.00 0.00 0.00 3.11
1886 11133 2.501723 AGTACAATCGATGGCACTCCTT 59.498 45.455 0.00 0.00 0.00 3.36
1892 11139 4.159693 AGACTAACAGTACAATCGATGGCA 59.840 41.667 0.00 0.00 0.00 4.92
1930 11177 5.282055 AGATGCCGACAGATCAGAATAAA 57.718 39.130 0.00 0.00 0.00 1.40
1953 11200 5.327732 TCATCATCTTCCTTTGCCTTTCTT 58.672 37.500 0.00 0.00 0.00 2.52
2001 11248 9.522804 GTTAGTAGATCCTTGTATGTGAAAGAG 57.477 37.037 0.00 0.00 0.00 2.85
2019 11266 1.822990 CCTTCGGTGGCAGTTAGTAGA 59.177 52.381 0.00 0.00 0.00 2.59
2061 11308 0.856982 TTCCAAAGCCTCCTTTCCCA 59.143 50.000 0.00 0.00 39.20 4.37
2097 11344 1.149174 CTGTGTGGTGGAAGGCAGT 59.851 57.895 0.00 0.00 0.00 4.40
2104 11351 1.301637 CGACATGCTGTGTGGTGGA 60.302 57.895 0.00 0.00 42.36 4.02
2211 11458 1.352083 AGCCTAGCAGTTGGACAAGA 58.648 50.000 0.00 0.00 0.00 3.02
2310 11557 0.396139 AATCCAGGGTCGGCGTAGTA 60.396 55.000 6.85 0.00 0.00 1.82
2695 11942 2.198150 ACCTTGCCATGTGCCACA 59.802 55.556 0.00 0.00 40.16 4.17
2709 11956 4.259952 TCGATGATCGAGCCACCT 57.740 55.556 14.25 0.00 44.82 4.00
2794 12042 1.432514 GACAGCGAATGAGAGCACAA 58.567 50.000 0.00 0.00 35.48 3.33
3083 12347 3.422303 CATCGGCACCACACCACG 61.422 66.667 0.00 0.00 0.00 4.94
3092 12356 2.031157 ACTTGCTTACAAACATCGGCAC 60.031 45.455 0.00 0.00 34.74 5.01
3096 12360 2.584791 GCCACTTGCTTACAAACATCG 58.415 47.619 0.00 0.00 34.74 3.84
3117 12383 1.037493 ATACCACGCGCTCTGGATTA 58.963 50.000 23.66 9.96 32.55 1.75
3130 12396 1.135721 GTCGACACCCTACCATACCAC 59.864 57.143 11.55 0.00 0.00 4.16
3131 12397 1.006281 AGTCGACACCCTACCATACCA 59.994 52.381 19.50 0.00 0.00 3.25
3132 12398 1.772836 AGTCGACACCCTACCATACC 58.227 55.000 19.50 0.00 0.00 2.73
3133 12399 3.255149 CCATAGTCGACACCCTACCATAC 59.745 52.174 19.50 0.00 0.00 2.39
3134 12400 3.117398 ACCATAGTCGACACCCTACCATA 60.117 47.826 19.50 0.00 0.00 2.74
3163 12565 1.065928 GGCCGATGACTCTACCACG 59.934 63.158 0.00 0.00 0.00 4.94
3198 12608 2.419011 ATACAAACACGCCAGCCCCA 62.419 55.000 0.00 0.00 0.00 4.96
3259 12669 8.553459 TTTCATACAGAAGAAGAGAATTGACC 57.447 34.615 0.00 0.00 37.57 4.02
3277 12693 5.053145 CACCAGAGCTCTACCATTTCATAC 58.947 45.833 17.75 0.00 0.00 2.39
3285 12701 0.409876 AGTCCACCAGAGCTCTACCA 59.590 55.000 17.75 0.00 0.00 3.25
3379 12847 4.278170 TGCTAGTGTCCAATTTGTTTCTGG 59.722 41.667 0.00 0.00 0.00 3.86
3401 12869 6.805760 CGGATCTGACATTATCATCAGTACTG 59.194 42.308 17.17 17.17 42.52 2.74
3428 12896 2.989840 CTGATCTCGTGCGAAAAGAACT 59.010 45.455 0.00 0.00 0.00 3.01
3437 12905 2.735823 TCATGAATCTGATCTCGTGCG 58.264 47.619 0.00 0.00 0.00 5.34
3514 12982 3.957497 AGTTTTGTGATGCCCTGTTGTTA 59.043 39.130 0.00 0.00 0.00 2.41
3515 12983 2.765699 AGTTTTGTGATGCCCTGTTGTT 59.234 40.909 0.00 0.00 0.00 2.83
3516 12984 2.362077 GAGTTTTGTGATGCCCTGTTGT 59.638 45.455 0.00 0.00 0.00 3.32
3563 20209 5.587844 CCCATCAGAAAATAGGTTCAGTGAG 59.412 44.000 0.00 0.00 0.00 3.51
3652 20298 8.447833 CCAATTCCATCATTTCACAGAAAATTG 58.552 33.333 0.00 0.00 32.77 2.32
3653 20299 8.377034 TCCAATTCCATCATTTCACAGAAAATT 58.623 29.630 0.00 0.00 0.00 1.82
3662 20308 6.461927 GCATAGCTTCCAATTCCATCATTTCA 60.462 38.462 0.00 0.00 0.00 2.69
3672 20318 6.830873 ATTATGGAGCATAGCTTCCAATTC 57.169 37.500 8.90 0.00 39.88 2.17
3679 20325 6.942532 TTTTCGAATTATGGAGCATAGCTT 57.057 33.333 0.00 0.00 39.88 3.74
3846 20492 3.857093 ACAACTGCACAATGAAACGAAAC 59.143 39.130 0.00 0.00 0.00 2.78
3878 20534 4.744795 AACAACTCCATCTGGTAGCTAG 57.255 45.455 0.00 0.00 36.34 3.42
3939 20596 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
3940 20597 7.549488 AGTTAAGTCATCTATTTTGGAACGGAG 59.451 37.037 0.00 0.00 0.00 4.63
3941 20598 7.391620 AGTTAAGTCATCTATTTTGGAACGGA 58.608 34.615 0.00 0.00 0.00 4.69
3942 20599 7.611213 AGTTAAGTCATCTATTTTGGAACGG 57.389 36.000 0.00 0.00 0.00 4.44
3943 20600 9.329913 CAAAGTTAAGTCATCTATTTTGGAACG 57.670 33.333 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.