Multiple sequence alignment - TraesCS6B01G454800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G454800 chr6B 100.000 4398 0 0 1 4398 712230971 712226574 0.000000e+00 8122
1 TraesCS6B01G454800 chr6D 90.892 2657 195 25 795 3421 467009988 467007349 0.000000e+00 3522
2 TraesCS6B01G454800 chr6D 90.065 765 73 3 1 762 467010745 467009981 0.000000e+00 989
3 TraesCS6B01G454800 chr6D 77.860 271 27 15 3992 4241 467007348 467007090 2.130000e-28 137
4 TraesCS6B01G454800 chr6A 88.626 2708 242 33 996 3682 613305676 613303014 0.000000e+00 3234
5 TraesCS6B01G454800 chr6A 88.245 1897 189 17 1041 2935 613312263 613310399 0.000000e+00 2237
6 TraesCS6B01G454800 chr6A 88.245 1897 189 17 1041 2935 613321353 613319489 0.000000e+00 2237
7 TraesCS6B01G454800 chr6A 93.054 1123 75 2 2081 3203 613275458 613274339 0.000000e+00 1639
8 TraesCS6B01G454800 chr6A 86.985 776 87 4 1 762 613315899 613315124 0.000000e+00 863
9 TraesCS6B01G454800 chr6A 85.865 757 102 2 1264 2020 613276243 613275492 0.000000e+00 800
10 TraesCS6B01G454800 chr6A 89.242 567 58 3 1 564 613323077 613322511 0.000000e+00 706
11 TraesCS6B01G454800 chr6A 85.133 565 67 9 3232 3784 613274342 613273783 2.970000e-156 562
12 TraesCS6B01G454800 chr6A 85.276 489 67 3 274 762 613283312 613282829 2.360000e-137 499
13 TraesCS6B01G454800 chr6A 84.358 179 17 5 3907 4077 613273779 613273604 9.790000e-37 165
14 TraesCS6B01G454800 chr6A 90.789 76 6 1 4074 4149 613273248 613273174 2.800000e-17 100
15 TraesCS6B01G454800 chrUn 88.245 1897 189 17 1041 2935 328092305 328090441 0.000000e+00 2237
16 TraesCS6B01G454800 chrUn 95.082 122 6 0 3778 3899 455532505 455532626 4.490000e-45 193
17 TraesCS6B01G454800 chr2B 95.312 128 5 1 3770 3897 608215925 608215799 7.460000e-48 202
18 TraesCS6B01G454800 chr2B 94.531 128 5 1 3770 3897 385566952 385566827 3.470000e-46 196
19 TraesCS6B01G454800 chr2B 94.400 125 6 1 3781 3905 142446755 142446632 1.610000e-44 191
20 TraesCS6B01G454800 chr4D 94.400 125 7 0 3778 3902 428946376 428946500 4.490000e-45 193
21 TraesCS6B01G454800 chr3B 95.041 121 6 0 3780 3900 798492206 798492086 1.610000e-44 191
22 TraesCS6B01G454800 chr3B 90.071 141 13 1 3773 3913 454651980 454651841 9.720000e-42 182
23 TraesCS6B01G454800 chr4A 91.176 136 12 0 3768 3903 731405458 731405593 7.510000e-43 185
24 TraesCS6B01G454800 chr1D 89.189 148 13 3 3752 3898 328116265 328116120 9.720000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G454800 chr6B 712226574 712230971 4397 True 8122.000000 8122 100.000000 1 4398 1 chr6B.!!$R1 4397
1 TraesCS6B01G454800 chr6D 467007090 467010745 3655 True 1549.333333 3522 86.272333 1 4241 3 chr6D.!!$R1 4240
2 TraesCS6B01G454800 chr6A 613303014 613305676 2662 True 3234.000000 3234 88.626000 996 3682 1 chr6A.!!$R2 2686
3 TraesCS6B01G454800 chr6A 613310399 613323077 12678 True 1510.750000 2237 88.179250 1 2935 4 chr6A.!!$R4 2934
4 TraesCS6B01G454800 chr6A 613273174 613276243 3069 True 653.200000 1639 87.839800 1264 4149 5 chr6A.!!$R3 2885
5 TraesCS6B01G454800 chrUn 328090441 328092305 1864 True 2237.000000 2237 88.245000 1041 2935 1 chrUn.!!$R1 1894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 151 0.250553 AATGGTTTGGAACTCGCCGA 60.251 50.0 0.0 0.0 0.0 5.54 F
1456 2247 0.108585 TCTGACACCACTGAAAGCCC 59.891 55.0 0.0 0.0 37.6 5.19 F
2020 11916 0.250234 CGAGTCCTGCCAAATCCTCA 59.750 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 2324 0.038166 TGGCCCTGAACCACTGAATC 59.962 55.0 0.00 0.00 30.29 2.52 R
3395 13326 0.170561 CAGAGCATCACAAGCTTGCC 59.829 55.0 26.27 9.58 43.58 4.52 R
3968 13913 0.321671 TGCAGCTCCTACAACTGACC 59.678 55.0 0.00 0.00 33.10 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.853235 ACGGAAGTTGGGGTTTAGAG 57.147 50.000 0.00 0.00 46.40 2.43
44 48 5.429130 GGAAGTTGGGGTTTAGAGATACAG 58.571 45.833 0.00 0.00 0.00 2.74
49 53 3.206964 GGGGTTTAGAGATACAGCAAGC 58.793 50.000 0.00 0.00 0.00 4.01
65 69 4.440839 GCAAGCTGCTAAGGTAACATTT 57.559 40.909 0.90 0.00 40.96 2.32
98 102 5.073554 TGATTTGCTATCATAGTCCACCCAT 59.926 40.000 0.00 0.00 0.00 4.00
143 147 4.062293 TGAGTACAATGGTTTGGAACTCG 58.938 43.478 13.80 0.00 44.62 4.18
147 151 0.250553 AATGGTTTGGAACTCGCCGA 60.251 50.000 0.00 0.00 0.00 5.54
154 161 0.454600 TGGAACTCGCCGATGTAGTC 59.545 55.000 0.00 0.00 0.00 2.59
172 179 4.026356 AGTCATAGAAGCCAGCAGTTTT 57.974 40.909 0.00 0.00 0.00 2.43
173 180 4.401925 AGTCATAGAAGCCAGCAGTTTTT 58.598 39.130 0.00 0.00 0.00 1.94
230 237 3.333029 ACATGGTTGTCATCGATGTCA 57.667 42.857 24.09 21.60 32.92 3.58
231 238 3.877559 ACATGGTTGTCATCGATGTCAT 58.122 40.909 22.80 16.41 32.92 3.06
250 257 5.127682 TGTCATCGATCTCAGGATTCAAGAA 59.872 40.000 0.00 0.00 31.46 2.52
288 295 2.733227 GCGAAGAAAACATGGCCATCTG 60.733 50.000 17.61 10.51 0.00 2.90
298 305 5.894298 ACATGGCCATCTGAGTTAGAATA 57.106 39.130 17.61 0.00 39.30 1.75
299 306 5.862845 ACATGGCCATCTGAGTTAGAATAG 58.137 41.667 17.61 1.41 39.30 1.73
300 307 5.604231 ACATGGCCATCTGAGTTAGAATAGA 59.396 40.000 17.61 0.00 39.30 1.98
358 365 4.273148 AGTCACTGGTGGATGAAAGTAC 57.727 45.455 0.70 0.00 0.00 2.73
413 420 2.458951 CCCATGACAAACACAAACGTG 58.541 47.619 0.00 0.00 40.42 4.49
422 429 4.506886 AAACACAAACGTGGTTGAGAAA 57.493 36.364 4.36 0.00 42.73 2.52
437 444 0.671251 AGAAAGAGGAGATAGCGCCG 59.329 55.000 2.29 0.00 39.22 6.46
445 452 2.740055 GATAGCGCCGCCAGGATG 60.740 66.667 4.98 0.00 41.02 3.51
448 455 2.116983 ATAGCGCCGCCAGGATGATT 62.117 55.000 4.98 0.00 39.69 2.57
452 459 1.438814 GCCGCCAGGATGATTTTGG 59.561 57.895 0.00 0.00 39.69 3.28
467 474 5.694995 TGATTTTGGAAGCTTAGGGGATAG 58.305 41.667 0.00 0.00 0.00 2.08
505 512 0.394352 CTTGTACCACCTGGGCCATC 60.394 60.000 6.72 0.00 42.05 3.51
519 526 1.278238 GCCATCGGTTAGACTCAACG 58.722 55.000 0.00 0.00 0.00 4.10
520 527 1.278238 CCATCGGTTAGACTCAACGC 58.722 55.000 0.00 0.00 0.00 4.84
526 533 2.334838 GGTTAGACTCAACGCGTCATT 58.665 47.619 14.44 0.00 33.89 2.57
545 552 4.282957 TCATTTATCCACAAAGCTTTGCCA 59.717 37.500 33.72 20.34 41.79 4.92
556 563 2.176889 AGCTTTGCCATCAAGCTTCAT 58.823 42.857 0.00 0.00 35.00 2.57
560 567 4.534168 CTTTGCCATCAAGCTTCATATCG 58.466 43.478 0.00 0.00 33.12 2.92
588 1062 3.760580 AGCCATTATAGACCAGCTCAC 57.239 47.619 0.00 0.00 0.00 3.51
590 1064 4.483950 AGCCATTATAGACCAGCTCACTA 58.516 43.478 0.00 0.00 0.00 2.74
602 1076 1.678627 AGCTCACTAGTACCAGCGATG 59.321 52.381 12.60 0.00 36.95 3.84
608 1082 1.067212 CTAGTACCAGCGATGACACCC 59.933 57.143 0.06 0.00 0.00 4.61
652 1126 3.835395 AGACCGAGGAAGAAGAGAACAAT 59.165 43.478 0.00 0.00 0.00 2.71
666 1140 1.847798 AACAATGAGGTAGGGGCGCA 61.848 55.000 10.83 0.00 0.00 6.09
675 1149 0.460459 GTAGGGGCGCAAAGAGAGAC 60.460 60.000 10.83 0.00 0.00 3.36
714 1188 9.162764 CAAAGAGGTAAATTAACTAGCTTGCTA 57.837 33.333 0.00 2.19 0.00 3.49
861 1344 5.475564 GCTGGTAAGTTTAGGTGATTTTCCA 59.524 40.000 0.00 0.00 0.00 3.53
868 1351 0.251787 AGGTGATTTTCCAGGTGGGC 60.252 55.000 0.00 0.00 36.21 5.36
925 1432 2.125912 CAGCCCCGACGACTTGAG 60.126 66.667 0.00 0.00 0.00 3.02
926 1433 4.070552 AGCCCCGACGACTTGAGC 62.071 66.667 0.00 0.00 0.00 4.26
928 1435 4.796231 CCCCGACGACTTGAGCGG 62.796 72.222 0.00 0.00 43.20 5.52
932 1439 3.173240 GACGACTTGAGCGGCGAC 61.173 66.667 12.98 4.01 0.00 5.19
934 1441 2.430921 CGACTTGAGCGGCGACTT 60.431 61.111 12.98 0.00 0.00 3.01
935 1442 2.720758 CGACTTGAGCGGCGACTTG 61.721 63.158 12.98 4.94 0.00 3.16
936 1443 2.357517 ACTTGAGCGGCGACTTGG 60.358 61.111 12.98 0.00 0.00 3.61
939 1446 1.630244 CTTGAGCGGCGACTTGGAAG 61.630 60.000 12.98 7.53 0.00 3.46
940 1447 2.048127 GAGCGGCGACTTGGAAGT 60.048 61.111 12.98 0.00 43.16 3.01
958 1471 3.864789 AGTCCAGGTTTCACTGTCAAT 57.135 42.857 0.00 0.00 36.75 2.57
963 1476 4.761739 TCCAGGTTTCACTGTCAATTGATC 59.238 41.667 12.12 6.28 36.75 2.92
967 1480 4.378459 GGTTTCACTGTCAATTGATCGGAC 60.378 45.833 12.12 0.00 0.00 4.79
982 1495 5.003160 TGATCGGACAAATCTGTTCACATT 58.997 37.500 0.00 0.00 35.76 2.71
986 1499 3.119849 GGACAAATCTGTTCACATTCCCG 60.120 47.826 0.00 0.00 35.30 5.14
992 1759 2.039746 TCTGTTCACATTCCCGTCCAAT 59.960 45.455 0.00 0.00 0.00 3.16
1018 1785 4.377841 GCAACGAGAAGAAGTCCAAGATTG 60.378 45.833 0.00 0.00 0.00 2.67
1038 1807 2.645730 GTTTGCAACCACACACTTGA 57.354 45.000 0.00 0.00 0.00 3.02
1062 1831 0.397941 TGCAGCCAGCTGTAGTCTTT 59.602 50.000 20.11 0.00 45.24 2.52
1108 1877 0.112995 ACAATTTCTGGGCTCCTGCA 59.887 50.000 0.00 0.00 41.91 4.41
1133 1903 5.948162 ACCTCCATTAATTAGCAGGCATATG 59.052 40.000 0.00 0.00 0.00 1.78
1195 1986 1.573108 TTCCTCCTCATCCTCACCAC 58.427 55.000 0.00 0.00 0.00 4.16
1196 1987 0.325671 TCCTCCTCATCCTCACCACC 60.326 60.000 0.00 0.00 0.00 4.61
1197 1988 1.341156 CCTCCTCATCCTCACCACCC 61.341 65.000 0.00 0.00 0.00 4.61
1262 2053 4.840716 ACTCATCTTCAATGGCTTCTCT 57.159 40.909 0.00 0.00 0.00 3.10
1271 2062 4.074970 TCAATGGCTTCTCTGAGGAAAAC 58.925 43.478 4.59 0.00 0.00 2.43
1278 2069 4.745172 GCTTCTCTGAGGAAAACCTGAAGT 60.745 45.833 4.59 0.00 34.12 3.01
1355 2146 2.556114 CCTGACAGAAGGGGATGCTTTT 60.556 50.000 3.32 0.00 33.28 2.27
1451 2242 3.494924 CCATCAACTCTGACACCACTGAA 60.495 47.826 0.00 0.00 33.30 3.02
1452 2243 3.904800 TCAACTCTGACACCACTGAAA 57.095 42.857 0.00 0.00 0.00 2.69
1453 2244 3.797039 TCAACTCTGACACCACTGAAAG 58.203 45.455 0.00 0.00 42.29 2.62
1454 2245 2.246719 ACTCTGACACCACTGAAAGC 57.753 50.000 0.00 0.00 37.60 3.51
1455 2246 1.202698 ACTCTGACACCACTGAAAGCC 60.203 52.381 0.00 0.00 37.60 4.35
1456 2247 0.108585 TCTGACACCACTGAAAGCCC 59.891 55.000 0.00 0.00 37.60 5.19
1457 2248 0.890996 CTGACACCACTGAAAGCCCC 60.891 60.000 0.00 0.00 37.60 5.80
1458 2249 1.352622 TGACACCACTGAAAGCCCCT 61.353 55.000 0.00 0.00 37.60 4.79
1459 2250 0.606673 GACACCACTGAAAGCCCCTC 60.607 60.000 0.00 0.00 37.60 4.30
1460 2251 1.672356 CACCACTGAAAGCCCCTCG 60.672 63.158 0.00 0.00 37.60 4.63
1461 2252 2.045926 CCACTGAAAGCCCCTCGG 60.046 66.667 0.00 0.00 37.60 4.63
1472 2275 4.787280 CCCTCGGGAGCTCCTGGT 62.787 72.222 36.01 0.00 42.72 4.00
1477 2280 1.762460 CGGGAGCTCCTGGTATGGT 60.762 63.158 31.17 0.00 38.76 3.55
1557 2360 1.340017 GCCAGCTGGGTTTCACTGATA 60.340 52.381 33.46 0.00 39.65 2.15
1581 11474 3.402628 GAGGTAACAGCTCCAACTCAA 57.597 47.619 0.00 0.00 36.78 3.02
1589 11482 1.071385 AGCTCCAACTCAAGTGACCAG 59.929 52.381 0.00 0.00 0.00 4.00
1626 11519 2.924290 GAGCTCAACTACATCAACGACC 59.076 50.000 9.40 0.00 0.00 4.79
1662 11555 4.220821 TCGATGTCAAAAGCTTAGTCTCCT 59.779 41.667 0.00 0.00 0.00 3.69
1697 11593 1.553690 GCTCCTACAGGGCCAACAGA 61.554 60.000 6.18 0.00 35.41 3.41
1699 11595 0.984230 TCCTACAGGGCCAACAGAAG 59.016 55.000 6.18 0.00 35.41 2.85
1723 11619 3.230134 TCCAAAGCACCAAACTTAGCAT 58.770 40.909 0.00 0.00 0.00 3.79
1724 11620 3.255642 TCCAAAGCACCAAACTTAGCATC 59.744 43.478 0.00 0.00 0.00 3.91
1791 11687 7.084486 CCAAAAGCTAAATGTCACCTTAGAAC 58.916 38.462 7.44 0.00 0.00 3.01
1810 11706 3.685139 ACAACTTGGTGATCAGATCGT 57.315 42.857 5.91 0.00 0.00 3.73
1816 11712 2.097036 TGGTGATCAGATCGTACGGTT 58.903 47.619 16.52 3.10 0.00 4.44
1863 11759 3.092301 TCGTCCACTGTCAATCTCTCAT 58.908 45.455 0.00 0.00 0.00 2.90
1883 11779 5.311265 TCATCTTTGCTGTCAAACTCTGAT 58.689 37.500 0.00 0.00 37.28 2.90
1886 11782 5.125356 TCTTTGCTGTCAAACTCTGATCAA 58.875 37.500 0.00 0.00 37.28 2.57
1889 11785 3.811497 TGCTGTCAAACTCTGATCAAGTG 59.189 43.478 10.14 3.11 36.14 3.16
1913 11809 1.321474 CTGGGTTCTCTGCTGCAAAA 58.679 50.000 3.02 0.00 0.00 2.44
1915 11811 1.133823 TGGGTTCTCTGCTGCAAAAGA 60.134 47.619 3.02 7.04 0.00 2.52
1921 11817 2.889045 TCTCTGCTGCAAAAGAGCAAAT 59.111 40.909 16.90 0.00 45.65 2.32
1927 11823 6.707161 TCTGCTGCAAAAGAGCAAATAAATTT 59.293 30.769 3.02 0.00 45.65 1.82
1960 11856 9.872684 ATATGTTCTTGGATGGAGTTTTATGAT 57.127 29.630 0.00 0.00 0.00 2.45
1967 11863 8.837099 TTGGATGGAGTTTTATGATAAATGGT 57.163 30.769 0.00 0.00 0.00 3.55
1983 11879 0.976641 TGGTCAAGCTCCACCACTAG 59.023 55.000 11.84 0.00 37.78 2.57
2020 11916 0.250234 CGAGTCCTGCCAAATCCTCA 59.750 55.000 0.00 0.00 0.00 3.86
2023 11919 1.637553 AGTCCTGCCAAATCCTCATGT 59.362 47.619 0.00 0.00 0.00 3.21
2024 11920 2.846206 AGTCCTGCCAAATCCTCATGTA 59.154 45.455 0.00 0.00 0.00 2.29
2025 11921 2.945668 GTCCTGCCAAATCCTCATGTAC 59.054 50.000 0.00 0.00 0.00 2.90
2026 11922 2.575735 TCCTGCCAAATCCTCATGTACA 59.424 45.455 0.00 0.00 0.00 2.90
2027 11923 3.010027 TCCTGCCAAATCCTCATGTACAA 59.990 43.478 0.00 0.00 0.00 2.41
2028 11924 3.763360 CCTGCCAAATCCTCATGTACAAA 59.237 43.478 0.00 0.00 0.00 2.83
2029 11925 4.220382 CCTGCCAAATCCTCATGTACAAAA 59.780 41.667 0.00 0.00 0.00 2.44
2030 11926 5.389859 TGCCAAATCCTCATGTACAAAAG 57.610 39.130 0.00 0.00 0.00 2.27
2031 11927 4.220382 TGCCAAATCCTCATGTACAAAAGG 59.780 41.667 16.99 16.99 0.00 3.11
2032 11928 4.462483 GCCAAATCCTCATGTACAAAAGGA 59.538 41.667 24.15 24.15 41.93 3.36
2034 11930 6.681368 GCCAAATCCTCATGTACAAAAGGATC 60.681 42.308 28.93 18.85 45.70 3.36
2035 11931 6.604795 CCAAATCCTCATGTACAAAAGGATCT 59.395 38.462 28.93 19.85 45.70 2.75
2036 11932 7.415989 CCAAATCCTCATGTACAAAAGGATCTG 60.416 40.741 28.93 26.28 45.70 2.90
2037 11933 4.517285 TCCTCATGTACAAAAGGATCTGC 58.483 43.478 20.23 0.00 33.00 4.26
2038 11934 3.629398 CCTCATGTACAAAAGGATCTGCC 59.371 47.826 17.86 0.00 0.00 4.85
2039 11935 4.264253 CTCATGTACAAAAGGATCTGCCA 58.736 43.478 0.00 0.00 40.02 4.92
2040 11936 4.264253 TCATGTACAAAAGGATCTGCCAG 58.736 43.478 0.00 0.00 40.02 4.85
2041 11937 4.019411 TCATGTACAAAAGGATCTGCCAGA 60.019 41.667 0.00 0.00 40.02 3.86
2042 11938 4.574674 TGTACAAAAGGATCTGCCAGAT 57.425 40.909 6.98 6.98 37.73 2.90
2161 12090 6.773976 TCTCAAGTTGTGGTTGAAGAAAAT 57.226 33.333 2.11 0.00 33.56 1.82
2196 12125 3.541242 AATGGGAAATTGACTGTGGGA 57.459 42.857 0.00 0.00 0.00 4.37
2206 12135 1.887854 TGACTGTGGGATGTTGCAATG 59.112 47.619 0.59 0.00 0.00 2.82
2213 12142 2.964464 TGGGATGTTGCAATGTTTCACT 59.036 40.909 0.59 0.00 0.00 3.41
2238 12167 6.377327 ACAAAGATCTATTTATTGCCACCG 57.623 37.500 0.00 0.00 0.00 4.94
2348 12277 1.930251 TCAAGAGGGTGTCTCCAGAG 58.070 55.000 0.00 0.00 43.44 3.35
2568 12497 1.176527 CATCATCAAAGGGGTTGCGT 58.823 50.000 0.00 0.00 37.13 5.24
2578 12507 4.043200 GGTTGCGTCTGGCCTTGC 62.043 66.667 3.32 2.94 42.61 4.01
2760 12689 1.282157 GGGGTTACATTGCTCCTGAGT 59.718 52.381 0.00 0.00 0.00 3.41
2792 12721 1.007387 GAAGGCAACCAAGGCAACG 60.007 57.895 0.00 0.00 39.32 4.10
2795 12724 2.335011 GCAACCAAGGCAACGGAC 59.665 61.111 0.00 0.00 46.39 4.79
2939 12868 1.332686 CTCATTGATGCCATGGACACG 59.667 52.381 18.40 6.17 0.00 4.49
2951 12880 3.254060 CATGGACACGAGGTTAGAACAG 58.746 50.000 0.00 0.00 0.00 3.16
2961 12890 2.233922 AGGTTAGAACAGGACCATGTCG 59.766 50.000 0.00 0.00 35.89 4.35
3193 13122 1.843206 AGGCCTTTCTGGAGGAAGATC 59.157 52.381 0.00 0.00 39.25 2.75
3204 13133 2.637947 GAGGAAGATCAAAGAGGTGGC 58.362 52.381 0.00 0.00 0.00 5.01
3251 13182 2.352651 CAGTGTATCGCCATCAAACCTG 59.647 50.000 0.00 0.00 0.00 4.00
3350 13281 7.907214 ACTTCTACAATGAGGTTCAATGTAC 57.093 36.000 3.52 0.00 38.61 2.90
3389 13320 9.730705 AGAGACAATATGTACCATAAATCCATG 57.269 33.333 0.00 0.00 0.00 3.66
3434 13365 6.267928 GCTCTGTAAGGGGAAGATGTTCTATA 59.732 42.308 2.24 0.00 32.24 1.31
3435 13366 7.038658 GCTCTGTAAGGGGAAGATGTTCTATAT 60.039 40.741 2.24 0.00 32.24 0.86
3436 13367 9.535170 CTCTGTAAGGGGAAGATGTTCTATATA 57.465 37.037 2.24 0.00 32.72 0.86
3485 13416 3.469008 TCGCTTCCCCTATATTGTGTG 57.531 47.619 0.00 0.00 0.00 3.82
3492 13423 6.071616 GCTTCCCCTATATTGTGTGTCAAAAA 60.072 38.462 0.00 0.00 39.62 1.94
3497 13428 6.350864 CCCTATATTGTGTGTCAAAAATGCCA 60.351 38.462 0.00 0.00 39.62 4.92
3504 13435 3.931468 TGTGTCAAAAATGCCACAACTTG 59.069 39.130 0.00 0.00 35.07 3.16
3517 13448 4.616802 GCCACAACTTGTTATGTTGAATCG 59.383 41.667 12.64 0.35 45.27 3.34
3527 13458 7.956420 TGTTATGTTGAATCGTAAACAGAGT 57.044 32.000 0.00 0.00 39.50 3.24
3538 13469 5.904941 TCGTAAACAGAGTTGTTACAGGAA 58.095 37.500 0.00 0.00 46.54 3.36
3575 13506 3.884774 TGTGGGTGACTGGTGGGC 61.885 66.667 0.00 0.00 0.00 5.36
3581 13512 4.954118 TGACTGGTGGGCGAGGGT 62.954 66.667 0.00 0.00 0.00 4.34
3593 13524 0.889186 GCGAGGGTGTGGTGATTTGT 60.889 55.000 0.00 0.00 0.00 2.83
3602 13533 2.308570 TGTGGTGATTTGTAGCCATCCT 59.691 45.455 0.00 0.00 33.20 3.24
3612 13543 1.134491 GTAGCCATCCTTTGTAGCCGT 60.134 52.381 0.00 0.00 0.00 5.68
3623 13554 0.793861 TGTAGCCGTGTTCGCAAATC 59.206 50.000 0.00 0.00 35.54 2.17
3643 13574 7.009174 GCAAATCACATAATTTGGAGTTAACCG 59.991 37.037 0.88 0.00 43.65 4.44
3644 13575 7.696992 AATCACATAATTTGGAGTTAACCGT 57.303 32.000 0.88 0.00 0.00 4.83
3663 13594 3.064931 CGTCCCCTTCTGTTTTACTGAC 58.935 50.000 0.00 0.00 0.00 3.51
3665 13596 4.715713 GTCCCCTTCTGTTTTACTGACTT 58.284 43.478 0.00 0.00 0.00 3.01
3671 13602 6.017852 CCCTTCTGTTTTACTGACTTCTTCAC 60.018 42.308 0.00 0.00 0.00 3.18
3673 13604 7.254590 CCTTCTGTTTTACTGACTTCTTCACAG 60.255 40.741 0.00 0.00 37.62 3.66
3678 13609 7.921214 TGTTTTACTGACTTCTTCACAGACTAG 59.079 37.037 0.00 0.00 35.85 2.57
3683 13614 6.205853 ACTGACTTCTTCACAGACTAGTACAG 59.794 42.308 0.00 0.00 35.85 2.74
3684 13615 6.296803 TGACTTCTTCACAGACTAGTACAGA 58.703 40.000 0.00 0.00 0.00 3.41
3707 13638 7.175119 CAGACTAGTTCTCATTATATGGGACGA 59.825 40.741 0.00 0.00 40.05 4.20
3711 13642 6.071984 AGTTCTCATTATATGGGACGACTCT 58.928 40.000 0.00 0.00 40.05 3.24
3715 13657 7.232188 TCTCATTATATGGGACGACTCTAAGT 58.768 38.462 0.00 0.00 34.11 2.24
3716 13658 7.724506 TCTCATTATATGGGACGACTCTAAGTT 59.275 37.037 0.00 0.00 34.11 2.66
3720 13662 1.891150 TGGGACGACTCTAAGTTGGAC 59.109 52.381 0.00 0.00 33.85 4.02
3726 13668 5.069501 ACGACTCTAAGTTGGACCATAAC 57.930 43.478 0.00 0.00 33.85 1.89
3731 13673 5.045797 ACTCTAAGTTGGACCATAACCTTCC 60.046 44.000 0.00 0.00 0.00 3.46
3758 13700 6.538742 CACTGGAAACAACTCTTTCAGAACTA 59.461 38.462 0.00 0.00 42.06 2.24
3761 13703 7.758495 TGGAAACAACTCTTTCAGAACTAAAC 58.242 34.615 0.00 0.00 37.44 2.01
3789 13731 7.309770 ACAAAGATAATCATCTACTCCCTCC 57.690 40.000 0.00 0.00 40.81 4.30
3790 13732 6.015010 ACAAAGATAATCATCTACTCCCTCCG 60.015 42.308 0.00 0.00 40.81 4.63
3791 13733 5.263872 AGATAATCATCTACTCCCTCCGT 57.736 43.478 0.00 0.00 39.85 4.69
3792 13734 5.258051 AGATAATCATCTACTCCCTCCGTC 58.742 45.833 0.00 0.00 39.85 4.79
3793 13735 2.296073 ATCATCTACTCCCTCCGTCC 57.704 55.000 0.00 0.00 0.00 4.79
3794 13736 0.179026 TCATCTACTCCCTCCGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
3795 13737 1.150992 ATCTACTCCCTCCGTCCGG 59.849 63.158 0.00 0.00 0.00 5.14
3796 13738 1.351080 ATCTACTCCCTCCGTCCGGA 61.351 60.000 0.00 0.00 42.90 5.14
3797 13739 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3798 13740 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
3799 13741 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3800 13742 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3801 13743 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3802 13744 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3803 13745 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3804 13746 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3805 13747 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3806 13748 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3807 13749 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3808 13750 1.997606 CCGTCCGGAAATACTTGTCAC 59.002 52.381 5.23 0.00 37.50 3.67
3809 13751 2.610976 CCGTCCGGAAATACTTGTCACA 60.611 50.000 5.23 0.00 37.50 3.58
3810 13752 2.666508 CGTCCGGAAATACTTGTCACAG 59.333 50.000 5.23 0.00 0.00 3.66
3811 13753 3.613193 CGTCCGGAAATACTTGTCACAGA 60.613 47.826 5.23 0.00 0.00 3.41
3812 13754 4.312443 GTCCGGAAATACTTGTCACAGAA 58.688 43.478 5.23 0.00 0.00 3.02
3813 13755 4.753107 GTCCGGAAATACTTGTCACAGAAA 59.247 41.667 5.23 0.00 0.00 2.52
3814 13756 5.411669 GTCCGGAAATACTTGTCACAGAAAT 59.588 40.000 5.23 0.00 0.00 2.17
3815 13757 5.411361 TCCGGAAATACTTGTCACAGAAATG 59.589 40.000 0.00 0.00 0.00 2.32
3816 13758 5.088739 CGGAAATACTTGTCACAGAAATGC 58.911 41.667 0.00 0.00 0.00 3.56
3817 13759 5.334802 CGGAAATACTTGTCACAGAAATGCA 60.335 40.000 0.00 0.00 0.00 3.96
3818 13760 6.623549 CGGAAATACTTGTCACAGAAATGCAT 60.624 38.462 0.00 0.00 0.00 3.96
3819 13761 7.413988 CGGAAATACTTGTCACAGAAATGCATA 60.414 37.037 0.00 0.00 0.00 3.14
3820 13762 8.243426 GGAAATACTTGTCACAGAAATGCATAA 58.757 33.333 0.00 0.00 0.00 1.90
3821 13763 9.624697 GAAATACTTGTCACAGAAATGCATAAA 57.375 29.630 0.00 0.00 0.00 1.40
3822 13764 9.979578 AAATACTTGTCACAGAAATGCATAAAA 57.020 25.926 0.00 0.00 0.00 1.52
3823 13765 9.979578 AATACTTGTCACAGAAATGCATAAAAA 57.020 25.926 0.00 0.00 0.00 1.94
3825 13767 8.301730 ACTTGTCACAGAAATGCATAAAAATG 57.698 30.769 0.00 0.00 0.00 2.32
3826 13768 7.385752 ACTTGTCACAGAAATGCATAAAAATGG 59.614 33.333 0.00 0.00 0.00 3.16
3827 13769 6.990798 TGTCACAGAAATGCATAAAAATGGA 58.009 32.000 0.00 0.00 0.00 3.41
3828 13770 7.613585 TGTCACAGAAATGCATAAAAATGGAT 58.386 30.769 0.00 0.00 33.93 3.41
3829 13771 7.546316 TGTCACAGAAATGCATAAAAATGGATG 59.454 33.333 0.00 0.00 32.82 3.51
3830 13772 7.546667 GTCACAGAAATGCATAAAAATGGATGT 59.453 33.333 0.00 0.00 32.82 3.06
3831 13773 8.747471 TCACAGAAATGCATAAAAATGGATGTA 58.253 29.630 0.00 0.00 32.82 2.29
3832 13774 9.537192 CACAGAAATGCATAAAAATGGATGTAT 57.463 29.630 0.00 0.00 32.82 2.29
3833 13775 9.754382 ACAGAAATGCATAAAAATGGATGTATC 57.246 29.630 0.00 0.00 32.82 2.24
3834 13776 9.976511 CAGAAATGCATAAAAATGGATGTATCT 57.023 29.630 0.00 0.00 32.82 1.98
3840 13782 9.851686 TGCATAAAAATGGATGTATCTAGAACT 57.148 29.630 0.00 0.00 0.00 3.01
3867 13809 8.511748 AAATATGTCTAGGTACATCCATTCCT 57.488 34.615 0.56 0.00 40.52 3.36
3868 13810 7.726033 ATATGTCTAGGTACATCCATTCCTC 57.274 40.000 0.56 0.00 40.52 3.71
3869 13811 5.144159 TGTCTAGGTACATCCATTCCTCT 57.856 43.478 0.00 0.00 39.02 3.69
3870 13812 4.895889 TGTCTAGGTACATCCATTCCTCTG 59.104 45.833 0.00 0.00 39.02 3.35
3871 13813 5.141182 GTCTAGGTACATCCATTCCTCTGA 58.859 45.833 0.00 0.00 39.02 3.27
3872 13814 5.010213 GTCTAGGTACATCCATTCCTCTGAC 59.990 48.000 0.00 0.00 39.02 3.51
3873 13815 3.724478 AGGTACATCCATTCCTCTGACA 58.276 45.455 0.00 0.00 39.02 3.58
3874 13816 4.104086 AGGTACATCCATTCCTCTGACAA 58.896 43.478 0.00 0.00 39.02 3.18
3875 13817 4.163078 AGGTACATCCATTCCTCTGACAAG 59.837 45.833 0.00 0.00 39.02 3.16
3876 13818 4.080863 GGTACATCCATTCCTCTGACAAGT 60.081 45.833 0.00 0.00 35.97 3.16
3877 13819 5.128827 GGTACATCCATTCCTCTGACAAGTA 59.871 44.000 0.00 0.00 35.97 2.24
3878 13820 5.965033 ACATCCATTCCTCTGACAAGTAT 57.035 39.130 0.00 0.00 0.00 2.12
3879 13821 6.319048 ACATCCATTCCTCTGACAAGTATT 57.681 37.500 0.00 0.00 0.00 1.89
3880 13822 6.725364 ACATCCATTCCTCTGACAAGTATTT 58.275 36.000 0.00 0.00 0.00 1.40
3881 13823 6.825721 ACATCCATTCCTCTGACAAGTATTTC 59.174 38.462 0.00 0.00 0.00 2.17
3882 13824 5.745227 TCCATTCCTCTGACAAGTATTTCC 58.255 41.667 0.00 0.00 0.00 3.13
3883 13825 4.572389 CCATTCCTCTGACAAGTATTTCCG 59.428 45.833 0.00 0.00 0.00 4.30
3884 13826 3.887621 TCCTCTGACAAGTATTTCCGG 57.112 47.619 0.00 0.00 0.00 5.14
3885 13827 3.437213 TCCTCTGACAAGTATTTCCGGA 58.563 45.455 0.00 0.00 0.00 5.14
3886 13828 3.194968 TCCTCTGACAAGTATTTCCGGAC 59.805 47.826 1.83 0.00 0.00 4.79
3887 13829 3.056107 CCTCTGACAAGTATTTCCGGACA 60.056 47.826 1.83 0.00 0.00 4.02
3888 13830 4.177026 CTCTGACAAGTATTTCCGGACAG 58.823 47.826 1.83 4.97 0.00 3.51
3889 13831 3.830178 TCTGACAAGTATTTCCGGACAGA 59.170 43.478 1.83 7.66 0.00 3.41
3890 13832 4.082190 TCTGACAAGTATTTCCGGACAGAG 60.082 45.833 1.83 0.00 0.00 3.35
3891 13833 3.056107 TGACAAGTATTTCCGGACAGAGG 60.056 47.826 1.83 0.00 0.00 3.69
3892 13834 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
3893 13835 2.500098 CAAGTATTTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
3894 13836 2.389715 AGTATTTCCGGACAGAGGGAG 58.610 52.381 1.83 0.00 33.01 4.30
3895 13837 2.108970 GTATTTCCGGACAGAGGGAGT 58.891 52.381 1.83 0.00 33.01 3.85
3896 13838 2.544844 ATTTCCGGACAGAGGGAGTA 57.455 50.000 1.83 0.00 33.01 2.59
3897 13839 1.553706 TTTCCGGACAGAGGGAGTAC 58.446 55.000 1.83 0.00 33.01 2.73
3898 13840 0.702902 TTCCGGACAGAGGGAGTACT 59.297 55.000 1.83 0.00 33.01 2.73
3899 13841 0.702902 TCCGGACAGAGGGAGTACTT 59.297 55.000 0.00 0.00 0.00 2.24
3900 13842 1.076677 TCCGGACAGAGGGAGTACTTT 59.923 52.381 0.00 0.00 0.00 2.66
3901 13843 1.204941 CCGGACAGAGGGAGTACTTTG 59.795 57.143 0.00 0.00 0.00 2.77
3902 13844 2.168496 CGGACAGAGGGAGTACTTTGA 58.832 52.381 0.00 0.00 0.00 2.69
3903 13845 2.761208 CGGACAGAGGGAGTACTTTGAT 59.239 50.000 0.00 0.00 0.00 2.57
3904 13846 3.952323 CGGACAGAGGGAGTACTTTGATA 59.048 47.826 0.00 0.00 0.00 2.15
3905 13847 4.401519 CGGACAGAGGGAGTACTTTGATAA 59.598 45.833 0.00 0.00 0.00 1.75
3925 13867 8.213518 TGATAAATAAAGATGACTGCAAGGAC 57.786 34.615 0.00 0.00 39.30 3.85
3935 13877 1.212935 ACTGCAAGGACAAGGAGTGTT 59.787 47.619 0.00 0.00 37.90 3.32
3941 13883 2.690840 AGGACAAGGAGTGTTGTACCT 58.309 47.619 0.00 0.00 41.60 3.08
3947 13889 0.107831 GGAGTGTTGTACCTGTGGCA 59.892 55.000 0.00 0.00 0.00 4.92
3948 13890 1.271379 GGAGTGTTGTACCTGTGGCAT 60.271 52.381 0.00 0.00 0.00 4.40
3949 13891 2.076863 GAGTGTTGTACCTGTGGCATC 58.923 52.381 0.00 0.00 0.00 3.91
3951 13893 0.953471 TGTTGTACCTGTGGCATCGC 60.953 55.000 0.00 0.00 0.00 4.58
3952 13894 0.673644 GTTGTACCTGTGGCATCGCT 60.674 55.000 0.00 0.00 0.00 4.93
3953 13895 0.899019 TTGTACCTGTGGCATCGCTA 59.101 50.000 0.00 0.00 0.00 4.26
3960 13905 2.481568 CCTGTGGCATCGCTATATGTTG 59.518 50.000 0.00 0.00 0.00 3.33
3968 13913 5.333645 GGCATCGCTATATGTTGAGAACTTG 60.334 44.000 0.00 0.00 0.00 3.16
3976 13921 6.808008 ATATGTTGAGAACTTGGTCAGTTG 57.192 37.500 0.00 0.00 46.53 3.16
3983 13928 2.841442 ACTTGGTCAGTTGTAGGAGC 57.159 50.000 0.00 0.00 27.32 4.70
3984 13929 2.330216 ACTTGGTCAGTTGTAGGAGCT 58.670 47.619 0.00 0.00 27.32 4.09
3987 13932 0.321671 GGTCAGTTGTAGGAGCTGCA 59.678 55.000 8.35 0.00 0.00 4.41
3988 13933 1.674221 GGTCAGTTGTAGGAGCTGCAG 60.674 57.143 10.11 10.11 0.00 4.41
3989 13934 1.001406 GTCAGTTGTAGGAGCTGCAGT 59.999 52.381 16.64 1.59 0.00 4.40
4080 14387 4.280019 ACCAAACCCGTGGGAGCC 62.280 66.667 13.01 0.00 43.56 4.70
4096 14403 2.149973 AGCCCTGCTCCTTAATTTGG 57.850 50.000 0.00 0.00 30.62 3.28
4151 14458 2.184322 CGTCCCCTCCATGACACG 59.816 66.667 0.00 0.00 0.00 4.49
4153 14460 1.517832 GTCCCCTCCATGACACGAG 59.482 63.158 0.00 0.00 0.00 4.18
4168 14475 3.751518 ACACGAGCCCTTGAGTAAAAAT 58.248 40.909 0.00 0.00 0.00 1.82
4172 14479 3.181510 CGAGCCCTTGAGTAAAAATTCCG 60.182 47.826 0.00 0.00 0.00 4.30
4179 14486 5.507315 CCTTGAGTAAAAATTCCGTGCACTT 60.507 40.000 16.19 2.75 0.00 3.16
4180 14487 5.508200 TGAGTAAAAATTCCGTGCACTTT 57.492 34.783 16.19 9.81 0.00 2.66
4181 14488 5.277825 TGAGTAAAAATTCCGTGCACTTTG 58.722 37.500 16.19 3.34 0.00 2.77
4182 14489 4.048504 AGTAAAAATTCCGTGCACTTTGC 58.951 39.130 16.19 10.68 45.29 3.68
4183 14490 1.864565 AAAATTCCGTGCACTTTGCC 58.135 45.000 16.19 0.00 44.23 4.52
4184 14491 1.039856 AAATTCCGTGCACTTTGCCT 58.960 45.000 16.19 0.00 44.23 4.75
4185 14492 1.039856 AATTCCGTGCACTTTGCCTT 58.960 45.000 16.19 0.00 44.23 4.35
4186 14493 0.314935 ATTCCGTGCACTTTGCCTTG 59.685 50.000 16.19 0.00 44.23 3.61
4187 14494 2.348605 TTCCGTGCACTTTGCCTTGC 62.349 55.000 16.19 0.00 44.23 4.01
4188 14495 2.412525 CGTGCACTTTGCCTTGCA 59.587 55.556 16.19 0.00 46.43 4.08
4206 14513 0.040067 CAAGTGGCAAGAAACCGAGC 60.040 55.000 0.00 0.00 0.00 5.03
4212 14519 1.230635 GCAAGAAACCGAGCTCTGCA 61.231 55.000 12.85 0.00 0.00 4.41
4231 14538 2.030412 ACGCAGACATCAACCGCA 59.970 55.556 0.00 0.00 0.00 5.69
4232 14539 2.029288 ACGCAGACATCAACCGCAG 61.029 57.895 0.00 0.00 0.00 5.18
4233 14540 2.482374 GCAGACATCAACCGCAGC 59.518 61.111 0.00 0.00 0.00 5.25
4234 14541 2.327343 GCAGACATCAACCGCAGCA 61.327 57.895 0.00 0.00 0.00 4.41
4235 14542 1.651240 GCAGACATCAACCGCAGCAT 61.651 55.000 0.00 0.00 0.00 3.79
4236 14543 0.376152 CAGACATCAACCGCAGCATC 59.624 55.000 0.00 0.00 0.00 3.91
4237 14544 0.036105 AGACATCAACCGCAGCATCA 60.036 50.000 0.00 0.00 0.00 3.07
4238 14545 0.097674 GACATCAACCGCAGCATCAC 59.902 55.000 0.00 0.00 0.00 3.06
4240 14547 2.753966 ATCAACCGCAGCATCACGC 61.754 57.895 0.00 0.00 42.91 5.34
4249 14556 4.151417 GCATCACGCGCAACATTT 57.849 50.000 5.73 0.00 0.00 2.32
4250 14557 1.983160 GCATCACGCGCAACATTTC 59.017 52.632 5.73 0.00 0.00 2.17
4251 14558 0.454957 GCATCACGCGCAACATTTCT 60.455 50.000 5.73 0.00 0.00 2.52
4252 14559 1.527696 CATCACGCGCAACATTTCTC 58.472 50.000 5.73 0.00 0.00 2.87
4253 14560 1.129251 CATCACGCGCAACATTTCTCT 59.871 47.619 5.73 0.00 0.00 3.10
4254 14561 0.512518 TCACGCGCAACATTTCTCTG 59.487 50.000 5.73 0.00 0.00 3.35
4255 14562 0.453282 CACGCGCAACATTTCTCTGG 60.453 55.000 5.73 0.00 0.00 3.86
4256 14563 1.512734 CGCGCAACATTTCTCTGGC 60.513 57.895 8.75 0.00 0.00 4.85
4257 14564 1.580942 GCGCAACATTTCTCTGGCA 59.419 52.632 0.30 0.00 0.00 4.92
4258 14565 0.171903 GCGCAACATTTCTCTGGCAT 59.828 50.000 0.30 0.00 0.00 4.40
4259 14566 1.796617 GCGCAACATTTCTCTGGCATC 60.797 52.381 0.30 0.00 0.00 3.91
4260 14567 1.741706 CGCAACATTTCTCTGGCATCT 59.258 47.619 0.00 0.00 0.00 2.90
4261 14568 2.223203 CGCAACATTTCTCTGGCATCTC 60.223 50.000 0.00 0.00 0.00 2.75
4262 14569 3.015327 GCAACATTTCTCTGGCATCTCT 58.985 45.455 0.00 0.00 0.00 3.10
4263 14570 3.065095 GCAACATTTCTCTGGCATCTCTC 59.935 47.826 0.00 0.00 0.00 3.20
4264 14571 3.557228 ACATTTCTCTGGCATCTCTCC 57.443 47.619 0.00 0.00 0.00 3.71
4265 14572 2.842496 ACATTTCTCTGGCATCTCTCCA 59.158 45.455 0.00 0.00 0.00 3.86
4266 14573 3.265221 ACATTTCTCTGGCATCTCTCCAA 59.735 43.478 0.00 0.00 32.41 3.53
4267 14574 4.263639 ACATTTCTCTGGCATCTCTCCAAA 60.264 41.667 0.00 0.00 32.41 3.28
4268 14575 3.340814 TTCTCTGGCATCTCTCCAAAC 57.659 47.619 0.00 0.00 32.41 2.93
4269 14576 2.259917 TCTCTGGCATCTCTCCAAACA 58.740 47.619 0.00 0.00 32.41 2.83
4270 14577 2.235650 TCTCTGGCATCTCTCCAAACAG 59.764 50.000 0.00 0.00 32.41 3.16
4271 14578 1.280133 TCTGGCATCTCTCCAAACAGG 59.720 52.381 0.00 0.00 39.47 4.00
4272 14579 0.322816 TGGCATCTCTCCAAACAGGC 60.323 55.000 0.00 0.00 37.29 4.85
4273 14580 1.034292 GGCATCTCTCCAAACAGGCC 61.034 60.000 0.00 0.00 37.29 5.19
4274 14581 1.372087 GCATCTCTCCAAACAGGCCG 61.372 60.000 0.00 0.00 37.29 6.13
4275 14582 1.078143 ATCTCTCCAAACAGGCCGC 60.078 57.895 0.00 0.00 37.29 6.53
4276 14583 1.841302 ATCTCTCCAAACAGGCCGCA 61.841 55.000 0.00 0.00 37.29 5.69
4277 14584 2.032528 TCTCCAAACAGGCCGCAG 59.967 61.111 0.00 0.00 37.29 5.18
4290 14597 4.047834 CGCAGGACATGTGTGTGT 57.952 55.556 1.15 0.00 39.09 3.72
4291 14598 2.320215 CGCAGGACATGTGTGTGTT 58.680 52.632 1.15 0.00 39.09 3.32
4292 14599 0.235665 CGCAGGACATGTGTGTGTTC 59.764 55.000 1.15 0.00 39.09 3.18
4293 14600 0.235665 GCAGGACATGTGTGTGTTCG 59.764 55.000 1.15 0.00 39.09 3.95
4294 14601 1.581934 CAGGACATGTGTGTGTTCGT 58.418 50.000 1.15 0.00 39.09 3.85
4295 14602 1.939934 CAGGACATGTGTGTGTTCGTT 59.060 47.619 1.15 0.00 39.09 3.85
4296 14603 2.032894 CAGGACATGTGTGTGTTCGTTC 60.033 50.000 1.15 0.00 39.09 3.95
4297 14604 1.263217 GGACATGTGTGTGTTCGTTCC 59.737 52.381 1.15 0.00 39.09 3.62
4298 14605 1.937223 GACATGTGTGTGTTCGTTCCA 59.063 47.619 1.15 0.00 39.09 3.53
4299 14606 2.548057 GACATGTGTGTGTTCGTTCCAT 59.452 45.455 1.15 0.00 39.09 3.41
4300 14607 2.548057 ACATGTGTGTGTTCGTTCCATC 59.452 45.455 0.00 0.00 37.14 3.51
4301 14608 2.317530 TGTGTGTGTTCGTTCCATCA 57.682 45.000 0.00 0.00 0.00 3.07
4302 14609 2.209273 TGTGTGTGTTCGTTCCATCAG 58.791 47.619 0.00 0.00 0.00 2.90
4303 14610 1.531149 GTGTGTGTTCGTTCCATCAGG 59.469 52.381 0.00 0.00 0.00 3.86
4304 14611 0.517316 GTGTGTTCGTTCCATCAGGC 59.483 55.000 0.00 0.00 33.74 4.85
4305 14612 0.948623 TGTGTTCGTTCCATCAGGCG 60.949 55.000 0.00 0.00 33.74 5.52
4306 14613 0.949105 GTGTTCGTTCCATCAGGCGT 60.949 55.000 0.00 0.00 33.74 5.68
4307 14614 0.669318 TGTTCGTTCCATCAGGCGTC 60.669 55.000 0.00 0.00 33.74 5.19
4308 14615 0.669318 GTTCGTTCCATCAGGCGTCA 60.669 55.000 0.00 0.00 33.74 4.35
4309 14616 0.669318 TTCGTTCCATCAGGCGTCAC 60.669 55.000 0.00 0.00 33.74 3.67
4310 14617 2.100631 CGTTCCATCAGGCGTCACC 61.101 63.158 0.00 0.00 39.61 4.02
4311 14618 1.003839 GTTCCATCAGGCGTCACCA 60.004 57.895 0.00 0.00 43.14 4.17
4312 14619 1.003839 TTCCATCAGGCGTCACCAC 60.004 57.895 0.00 0.00 43.14 4.16
4321 14628 3.612681 CGTCACCACGTCCCCTGT 61.613 66.667 0.00 0.00 41.42 4.00
4322 14629 2.342648 GTCACCACGTCCCCTGTC 59.657 66.667 0.00 0.00 0.00 3.51
4323 14630 2.920912 TCACCACGTCCCCTGTCC 60.921 66.667 0.00 0.00 0.00 4.02
4324 14631 2.923035 CACCACGTCCCCTGTCCT 60.923 66.667 0.00 0.00 0.00 3.85
4325 14632 2.923035 ACCACGTCCCCTGTCCTG 60.923 66.667 0.00 0.00 0.00 3.86
4326 14633 3.706373 CCACGTCCCCTGTCCTGG 61.706 72.222 0.00 0.00 0.00 4.45
4327 14634 4.394712 CACGTCCCCTGTCCTGGC 62.395 72.222 0.00 0.00 0.00 4.85
4328 14635 4.954118 ACGTCCCCTGTCCTGGCA 62.954 66.667 0.00 0.00 0.00 4.92
4329 14636 4.394712 CGTCCCCTGTCCTGGCAC 62.395 72.222 0.00 0.00 0.00 5.01
4330 14637 3.249189 GTCCCCTGTCCTGGCACA 61.249 66.667 0.00 0.00 0.00 4.57
4331 14638 2.449518 TCCCCTGTCCTGGCACAA 60.450 61.111 0.00 0.00 38.70 3.33
4332 14639 2.081787 TCCCCTGTCCTGGCACAAA 61.082 57.895 0.00 0.00 38.70 2.83
4333 14640 1.903404 CCCCTGTCCTGGCACAAAC 60.903 63.158 0.00 0.00 38.70 2.93
4334 14641 1.152777 CCCTGTCCTGGCACAAACA 60.153 57.895 0.00 0.00 38.70 2.83
4335 14642 0.540365 CCCTGTCCTGGCACAAACAT 60.540 55.000 0.00 0.00 38.70 2.71
4336 14643 0.599558 CCTGTCCTGGCACAAACATG 59.400 55.000 0.00 0.00 38.70 3.21
4337 14644 0.038892 CTGTCCTGGCACAAACATGC 60.039 55.000 0.00 0.00 45.34 4.06
4338 14645 0.467844 TGTCCTGGCACAAACATGCT 60.468 50.000 0.00 0.00 45.38 3.79
4339 14646 1.202867 TGTCCTGGCACAAACATGCTA 60.203 47.619 0.00 0.00 45.38 3.49
4341 14648 3.708195 CTGGCACAAACATGCTAGC 57.292 52.632 8.10 8.10 45.61 3.42
4342 14649 0.883153 CTGGCACAAACATGCTAGCA 59.117 50.000 21.85 21.85 45.61 3.49
4343 14650 1.475280 CTGGCACAAACATGCTAGCAT 59.525 47.619 24.67 24.67 45.61 3.79
4344 14651 2.684374 CTGGCACAAACATGCTAGCATA 59.316 45.455 29.12 10.14 45.61 3.14
4345 14652 2.684374 TGGCACAAACATGCTAGCATAG 59.316 45.455 29.12 23.32 45.38 2.23
4355 14662 3.488048 CTAGCATAGCGTCTCCAGC 57.512 57.895 0.00 0.00 0.00 4.85
4356 14663 0.038709 CTAGCATAGCGTCTCCAGCC 60.039 60.000 0.00 0.00 34.64 4.85
4357 14664 0.755327 TAGCATAGCGTCTCCAGCCA 60.755 55.000 0.00 0.00 34.64 4.75
4358 14665 1.884926 GCATAGCGTCTCCAGCCAC 60.885 63.158 0.00 0.00 34.64 5.01
4359 14666 1.227380 CATAGCGTCTCCAGCCACC 60.227 63.158 0.00 0.00 34.64 4.61
4360 14667 1.685765 ATAGCGTCTCCAGCCACCA 60.686 57.895 0.00 0.00 34.64 4.17
4361 14668 1.961180 ATAGCGTCTCCAGCCACCAC 61.961 60.000 0.00 0.00 34.64 4.16
4363 14670 3.991051 CGTCTCCAGCCACCACGT 61.991 66.667 0.00 0.00 0.00 4.49
4364 14671 2.426023 GTCTCCAGCCACCACGTT 59.574 61.111 0.00 0.00 0.00 3.99
4365 14672 1.668151 GTCTCCAGCCACCACGTTC 60.668 63.158 0.00 0.00 0.00 3.95
4366 14673 2.358737 CTCCAGCCACCACGTTCC 60.359 66.667 0.00 0.00 0.00 3.62
4367 14674 2.847234 TCCAGCCACCACGTTCCT 60.847 61.111 0.00 0.00 0.00 3.36
4368 14675 2.669569 CCAGCCACCACGTTCCTG 60.670 66.667 0.00 0.00 0.00 3.86
4369 14676 2.669569 CAGCCACCACGTTCCTGG 60.670 66.667 0.00 0.00 37.33 4.45
4370 14677 3.168528 AGCCACCACGTTCCTGGT 61.169 61.111 5.12 0.00 46.18 4.00
4371 14678 1.839747 AGCCACCACGTTCCTGGTA 60.840 57.895 0.00 0.00 43.15 3.25
4372 14679 1.375523 GCCACCACGTTCCTGGTAG 60.376 63.158 0.00 0.00 43.15 3.18
4373 14680 1.375523 CCACCACGTTCCTGGTAGC 60.376 63.158 0.00 0.00 43.15 3.58
4374 14681 1.375523 CACCACGTTCCTGGTAGCC 60.376 63.158 0.00 0.00 43.15 3.93
4375 14682 1.839747 ACCACGTTCCTGGTAGCCA 60.840 57.895 0.00 0.00 43.19 4.75
4376 14683 1.198759 ACCACGTTCCTGGTAGCCAT 61.199 55.000 0.00 0.00 43.19 4.40
4377 14684 0.035439 CCACGTTCCTGGTAGCCATT 60.035 55.000 0.00 0.00 30.82 3.16
4378 14685 1.613255 CCACGTTCCTGGTAGCCATTT 60.613 52.381 0.00 0.00 30.82 2.32
4379 14686 1.737793 CACGTTCCTGGTAGCCATTTC 59.262 52.381 0.00 0.00 30.82 2.17
4380 14687 1.006832 CGTTCCTGGTAGCCATTTCG 58.993 55.000 0.00 0.00 30.82 3.46
4381 14688 1.674817 CGTTCCTGGTAGCCATTTCGT 60.675 52.381 0.00 0.00 30.82 3.85
4382 14689 2.007608 GTTCCTGGTAGCCATTTCGTC 58.992 52.381 0.00 0.00 30.82 4.20
4383 14690 0.174845 TCCTGGTAGCCATTTCGTCG 59.825 55.000 0.00 0.00 30.82 5.12
4384 14691 0.174845 CCTGGTAGCCATTTCGTCGA 59.825 55.000 0.00 0.00 30.82 4.20
4385 14692 1.560923 CTGGTAGCCATTTCGTCGAG 58.439 55.000 0.00 0.00 30.82 4.04
4386 14693 0.459585 TGGTAGCCATTTCGTCGAGC 60.460 55.000 0.00 0.00 0.00 5.03
4387 14694 0.459585 GGTAGCCATTTCGTCGAGCA 60.460 55.000 6.92 0.00 0.00 4.26
4388 14695 0.645868 GTAGCCATTTCGTCGAGCAC 59.354 55.000 6.92 0.72 0.00 4.40
4389 14696 0.459585 TAGCCATTTCGTCGAGCACC 60.460 55.000 6.92 0.00 0.00 5.01
4390 14697 2.750888 GCCATTTCGTCGAGCACCC 61.751 63.158 0.00 0.00 0.00 4.61
4391 14698 1.079127 CCATTTCGTCGAGCACCCT 60.079 57.895 0.00 0.00 0.00 4.34
4392 14699 1.084370 CCATTTCGTCGAGCACCCTC 61.084 60.000 0.00 0.00 34.66 4.30
4393 14700 1.084370 CATTTCGTCGAGCACCCTCC 61.084 60.000 0.00 0.00 34.49 4.30
4394 14701 1.258445 ATTTCGTCGAGCACCCTCCT 61.258 55.000 0.00 0.00 34.49 3.69
4395 14702 1.469335 TTTCGTCGAGCACCCTCCTT 61.469 55.000 0.00 0.00 34.49 3.36
4396 14703 2.125912 CGTCGAGCACCCTCCTTG 60.126 66.667 0.00 0.00 34.49 3.61
4397 14704 2.435059 GTCGAGCACCCTCCTTGC 60.435 66.667 0.00 0.00 40.52 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 48 4.440839 AAATGTTACCTTAGCAGCTTGC 57.559 40.909 0.00 0.00 45.46 4.01
65 69 4.486125 TGATAGCAAATCACACCAGCTA 57.514 40.909 0.00 0.00 41.46 3.32
98 102 1.732917 CGGCAAACCAGTTCAAGCA 59.267 52.632 0.00 0.00 34.57 3.91
143 147 2.035961 TGGCTTCTATGACTACATCGGC 59.964 50.000 0.00 0.00 37.87 5.54
147 151 3.708631 ACTGCTGGCTTCTATGACTACAT 59.291 43.478 0.00 0.00 40.16 2.29
154 161 4.771590 TCAAAAACTGCTGGCTTCTATG 57.228 40.909 0.00 0.00 0.00 2.23
172 179 3.817084 CAGCTTGGTCTCAGTTGAATCAA 59.183 43.478 0.00 0.00 0.00 2.57
173 180 3.181451 ACAGCTTGGTCTCAGTTGAATCA 60.181 43.478 0.00 0.00 0.00 2.57
186 193 2.821969 GGATTGATGTCAACAGCTTGGT 59.178 45.455 0.00 0.00 38.86 3.67
230 237 4.653341 ACCTTCTTGAATCCTGAGATCGAT 59.347 41.667 0.00 0.00 0.00 3.59
231 238 4.026744 ACCTTCTTGAATCCTGAGATCGA 58.973 43.478 0.00 0.00 0.00 3.59
266 273 1.474077 GATGGCCATGTTTTCTTCGCT 59.526 47.619 26.56 0.00 0.00 4.93
276 283 4.785346 ATTCTAACTCAGATGGCCATGT 57.215 40.909 26.56 18.30 31.77 3.21
288 295 4.039852 CCTTGGCCTCCTCTATTCTAACTC 59.960 50.000 3.32 0.00 0.00 3.01
298 305 0.684805 CGAGTACCTTGGCCTCCTCT 60.685 60.000 3.32 0.00 0.00 3.69
299 306 1.817209 CGAGTACCTTGGCCTCCTC 59.183 63.158 3.32 0.00 0.00 3.71
300 307 2.359967 GCGAGTACCTTGGCCTCCT 61.360 63.158 3.32 0.00 0.00 3.69
358 365 0.474184 AGGTAATGGGATGGCCTTCG 59.526 55.000 12.20 0.00 0.00 3.79
413 420 3.712187 CGCTATCTCCTCTTTCTCAACC 58.288 50.000 0.00 0.00 0.00 3.77
422 429 3.299190 GGCGGCGCTATCTCCTCT 61.299 66.667 32.30 0.00 0.00 3.69
437 444 2.105766 AGCTTCCAAAATCATCCTGGC 58.894 47.619 0.00 0.00 0.00 4.85
445 452 4.520874 GCTATCCCCTAAGCTTCCAAAATC 59.479 45.833 0.00 0.00 35.80 2.17
448 455 3.117888 CAGCTATCCCCTAAGCTTCCAAA 60.118 47.826 0.00 0.00 46.82 3.28
452 459 1.417890 TGCAGCTATCCCCTAAGCTTC 59.582 52.381 0.00 0.00 46.82 3.86
482 489 2.747686 CCAGGTGGTACAAGCGGT 59.252 61.111 0.00 0.00 44.16 5.68
505 512 0.386352 TGACGCGTTGAGTCTAACCG 60.386 55.000 15.53 3.93 39.24 4.44
519 526 3.764885 AGCTTTGTGGATAAATGACGC 57.235 42.857 0.00 0.00 0.00 5.19
520 527 4.324402 GCAAAGCTTTGTGGATAAATGACG 59.676 41.667 33.47 9.56 40.24 4.35
526 533 3.831333 TGATGGCAAAGCTTTGTGGATAA 59.169 39.130 33.47 17.08 40.24 1.75
545 552 3.758755 TCAGCCGATATGAAGCTTGAT 57.241 42.857 2.10 2.79 33.70 2.57
588 1062 1.067212 GGGTGTCATCGCTGGTACTAG 59.933 57.143 1.08 1.08 0.00 2.57
590 1064 1.898154 GGGTGTCATCGCTGGTACT 59.102 57.895 0.00 0.00 0.00 2.73
608 1082 2.657237 GACCACCTCCACACCTCG 59.343 66.667 0.00 0.00 0.00 4.63
634 1108 4.180057 CCTCATTGTTCTCTTCTTCCTCG 58.820 47.826 0.00 0.00 0.00 4.63
652 1126 1.899437 CTCTTTGCGCCCCTACCTCA 61.899 60.000 4.18 0.00 0.00 3.86
714 1188 1.556911 CCTTCACTCACTGCCCTACAT 59.443 52.381 0.00 0.00 0.00 2.29
805 1279 4.721776 ACCTCCTCCATAGCACAGATTTTA 59.278 41.667 0.00 0.00 0.00 1.52
819 1293 0.606604 GCACGACTTAACCTCCTCCA 59.393 55.000 0.00 0.00 0.00 3.86
820 1294 0.896226 AGCACGACTTAACCTCCTCC 59.104 55.000 0.00 0.00 0.00 4.30
822 1296 0.608640 CCAGCACGACTTAACCTCCT 59.391 55.000 0.00 0.00 0.00 3.69
861 1344 0.033601 TATGAATTTGCCGCCCACCT 60.034 50.000 0.00 0.00 0.00 4.00
930 1437 3.433740 AGTGAAACCTGGACTTCCAAGTC 60.434 47.826 10.52 10.52 46.97 3.01
932 1439 2.880890 CAGTGAAACCTGGACTTCCAAG 59.119 50.000 0.00 0.00 46.97 3.61
934 1441 1.843851 ACAGTGAAACCTGGACTTCCA 59.156 47.619 0.00 0.00 44.78 3.53
935 1442 2.158813 TGACAGTGAAACCTGGACTTCC 60.159 50.000 0.00 0.00 37.80 3.46
936 1443 3.194005 TGACAGTGAAACCTGGACTTC 57.806 47.619 0.00 3.50 37.80 3.01
939 1446 3.882888 TCAATTGACAGTGAAACCTGGAC 59.117 43.478 3.38 0.00 37.80 4.02
940 1447 4.163441 TCAATTGACAGTGAAACCTGGA 57.837 40.909 3.38 0.00 37.80 3.86
941 1448 4.378770 CGATCAATTGACAGTGAAACCTGG 60.379 45.833 11.07 0.00 37.80 4.45
942 1449 4.378770 CCGATCAATTGACAGTGAAACCTG 60.379 45.833 11.07 0.00 37.80 4.00
958 1471 4.384940 TGTGAACAGATTTGTCCGATCAA 58.615 39.130 0.00 0.00 36.23 2.57
963 1476 3.119849 GGGAATGTGAACAGATTTGTCCG 60.120 47.826 0.00 0.00 36.23 4.79
967 1480 3.119849 GGACGGGAATGTGAACAGATTTG 60.120 47.826 0.00 0.00 0.00 2.32
986 1499 2.602878 TCTTCTCGTTGCGTATTGGAC 58.397 47.619 0.00 0.00 0.00 4.02
992 1759 1.610038 TGGACTTCTTCTCGTTGCGTA 59.390 47.619 0.00 0.00 0.00 4.42
1038 1807 2.786965 ACTACAGCTGGCTGCAGTGAT 61.787 52.381 22.77 8.79 45.77 3.06
1062 1831 5.237048 GCCCAAAAATGCTCAAGATAACAA 58.763 37.500 0.00 0.00 0.00 2.83
1108 1877 4.249638 TGCCTGCTAATTAATGGAGGTT 57.750 40.909 12.90 0.00 42.67 3.50
1133 1903 3.190079 TGAGTTACATCGATGCTGAAGC 58.810 45.455 25.11 10.92 42.50 3.86
1140 1910 6.273071 TGTCCATAGTTGAGTTACATCGATG 58.727 40.000 23.68 23.68 33.90 3.84
1141 1911 6.465439 TGTCCATAGTTGAGTTACATCGAT 57.535 37.500 0.00 0.00 0.00 3.59
1144 1914 5.760253 CCCATGTCCATAGTTGAGTTACATC 59.240 44.000 0.00 0.00 0.00 3.06
1176 1946 1.573108 GTGGTGAGGATGAGGAGGAA 58.427 55.000 0.00 0.00 0.00 3.36
1195 1986 2.214376 TGCATGGAGGTTAACAAGGG 57.786 50.000 8.10 0.00 0.00 3.95
1196 1987 4.806640 AAATGCATGGAGGTTAACAAGG 57.193 40.909 8.10 0.00 0.00 3.61
1271 2062 1.242076 CTTGGCCACTCAACTTCAGG 58.758 55.000 3.88 0.00 0.00 3.86
1278 2069 0.613260 ATAGACGCTTGGCCACTCAA 59.387 50.000 3.88 0.00 0.00 3.02
1355 2146 1.271840 AATCGAGGGGCCTGCTGTAA 61.272 55.000 0.84 0.00 0.00 2.41
1455 2246 2.664835 ATACCAGGAGCTCCCGAGGG 62.665 65.000 29.54 25.18 40.87 4.30
1456 2247 1.152440 ATACCAGGAGCTCCCGAGG 60.152 63.158 29.54 27.82 40.87 4.63
1457 2248 1.467678 CCATACCAGGAGCTCCCGAG 61.468 65.000 29.54 19.71 40.87 4.63
1458 2249 1.457643 CCATACCAGGAGCTCCCGA 60.458 63.158 29.54 12.39 40.87 5.14
1459 2250 1.749334 GACCATACCAGGAGCTCCCG 61.749 65.000 29.54 19.70 40.87 5.14
1460 2251 0.399233 AGACCATACCAGGAGCTCCC 60.399 60.000 29.54 11.59 36.42 4.30
1461 2252 1.414550 GAAGACCATACCAGGAGCTCC 59.585 57.143 26.22 26.22 0.00 4.70
1462 2253 1.067821 CGAAGACCATACCAGGAGCTC 59.932 57.143 4.71 4.71 0.00 4.09
1472 2275 2.427453 GGAAGAGAGCACGAAGACCATA 59.573 50.000 0.00 0.00 0.00 2.74
1477 2280 0.603569 GGTGGAAGAGAGCACGAAGA 59.396 55.000 0.00 0.00 0.00 2.87
1521 2324 0.038166 TGGCCCTGAACCACTGAATC 59.962 55.000 0.00 0.00 30.29 2.52
1523 2326 1.455849 CTGGCCCTGAACCACTGAA 59.544 57.895 0.00 0.00 32.49 3.02
1581 11474 5.696724 CGATTGTAAAGAAGAACTGGTCACT 59.303 40.000 0.00 0.00 0.00 3.41
1589 11482 6.146347 AGTTGAGCTCGATTGTAAAGAAGAAC 59.854 38.462 7.00 1.42 0.00 3.01
1626 11519 3.588955 TGACATCGATCTCAACAAGGTG 58.411 45.455 0.36 0.00 0.00 4.00
1662 11555 1.065272 GGAGCCGGTGGTATGGTTAAA 60.065 52.381 1.90 0.00 0.00 1.52
1697 11593 2.466846 AGTTTGGTGCTTTGGAACCTT 58.533 42.857 0.00 0.00 41.79 3.50
1699 11595 2.979814 AAGTTTGGTGCTTTGGAACC 57.020 45.000 0.00 0.00 41.62 3.62
1723 11619 1.599518 ACTTGCATCGGTTTGGCGA 60.600 52.632 0.00 0.00 0.00 5.54
1724 11620 1.442520 CACTTGCATCGGTTTGGCG 60.443 57.895 0.00 0.00 0.00 5.69
1751 11647 5.837829 AGCTTTTGGTCCCTTCCATTATAA 58.162 37.500 0.00 0.00 37.33 0.98
1762 11658 3.056821 GGTGACATTTAGCTTTTGGTCCC 60.057 47.826 0.00 0.00 0.00 4.46
1766 11662 6.817765 TCTAAGGTGACATTTAGCTTTTGG 57.182 37.500 0.00 0.00 37.15 3.28
1791 11687 3.547868 CGTACGATCTGATCACCAAGTTG 59.452 47.826 10.44 0.00 0.00 3.16
1816 11712 2.171659 TGTGGCAGACTCAGTGGTTTAA 59.828 45.455 0.00 0.00 0.00 1.52
1829 11725 1.067142 GTGGACGATAACTGTGGCAGA 60.067 52.381 2.91 0.00 35.18 4.26
1863 11759 4.707105 TGATCAGAGTTTGACAGCAAAGA 58.293 39.130 0.00 0.00 44.12 2.52
1883 11779 2.906389 AGAGAACCCAGCATACACTTGA 59.094 45.455 0.00 0.00 0.00 3.02
1886 11782 1.065854 GCAGAGAACCCAGCATACACT 60.066 52.381 0.00 0.00 0.00 3.55
1889 11785 1.661341 CAGCAGAGAACCCAGCATAC 58.339 55.000 0.00 0.00 0.00 2.39
1913 11809 8.480501 ACATATTGGCTGAAATTTATTTGCTCT 58.519 29.630 0.00 0.00 0.00 4.09
1915 11811 9.101655 GAACATATTGGCTGAAATTTATTTGCT 57.898 29.630 0.00 0.00 0.00 3.91
1921 11817 8.359875 TCCAAGAACATATTGGCTGAAATTTA 57.640 30.769 0.00 0.00 45.69 1.40
1927 11823 4.079844 TCCATCCAAGAACATATTGGCTGA 60.080 41.667 8.67 0.00 43.46 4.26
1960 11856 2.375174 AGTGGTGGAGCTTGACCATTTA 59.625 45.455 18.03 0.00 44.08 1.40
1967 11863 1.267121 GGTCTAGTGGTGGAGCTTGA 58.733 55.000 0.00 0.00 0.00 3.02
1983 11879 0.466124 CGAGGGAGATCAAAGGGGTC 59.534 60.000 0.00 0.00 0.00 4.46
2020 11916 4.574674 TCTGGCAGATCCTTTTGTACAT 57.425 40.909 14.43 0.00 35.26 2.29
2032 11928 3.854437 TCTACATGAGGATCTGGCAGAT 58.146 45.455 29.19 29.19 37.73 2.90
2033 11929 3.319031 TCTACATGAGGATCTGGCAGA 57.681 47.619 21.19 21.19 34.92 4.26
2034 11930 3.640498 TCTTCTACATGAGGATCTGGCAG 59.360 47.826 8.58 8.58 34.92 4.85
2035 11931 3.640498 CTCTTCTACATGAGGATCTGGCA 59.360 47.826 0.00 0.00 34.92 4.92
2036 11932 4.255833 CTCTTCTACATGAGGATCTGGC 57.744 50.000 0.00 0.00 34.92 4.85
2044 11940 8.728337 TTTTTCATGATCCTCTTCTACATGAG 57.272 34.615 0.00 0.00 44.69 2.90
2058 11954 8.517878 CATGGGTAGGATGTATTTTTCATGATC 58.482 37.037 0.00 0.00 32.55 2.92
2139 12068 5.979517 GGATTTTCTTCAACCACAACTTGAG 59.020 40.000 0.00 0.00 0.00 3.02
2161 12090 1.339610 CCCATTTTTCGTGTGCAAGGA 59.660 47.619 0.00 0.00 0.00 3.36
2196 12125 7.264221 TCTTTGTAAGTGAAACATTGCAACAT 58.736 30.769 0.00 0.00 41.43 2.71
2213 12142 7.012894 CCGGTGGCAATAAATAGATCTTTGTAA 59.987 37.037 0.00 0.00 0.00 2.41
2238 12167 0.878523 GCCTTTTTGTTGAACCCGCC 60.879 55.000 0.00 0.00 0.00 6.13
2348 12277 2.795329 TCTTTCATCCCCTGCTTTGAC 58.205 47.619 0.00 0.00 0.00 3.18
2536 12465 5.381174 TTTGATGATGTGAAGCCTTTGAG 57.619 39.130 0.00 0.00 0.00 3.02
2568 12497 1.671054 GCAAGTACGCAAGGCCAGA 60.671 57.895 5.01 0.00 46.39 3.86
2578 12507 1.645034 CCAGTCCTCATGCAAGTACG 58.355 55.000 0.00 0.00 0.00 3.67
2760 12689 2.367202 CCTTCCCGAGCCTAGCCAA 61.367 63.158 0.00 0.00 0.00 4.52
2792 12721 3.622459 GCCAAATGCATACACGTCC 57.378 52.632 0.00 0.00 40.77 4.79
2828 12757 3.499737 GGCCGTCTTCCACATGCG 61.500 66.667 0.00 0.00 0.00 4.73
2909 12838 2.421424 GGCATCAATGAGTGAACCAGTC 59.579 50.000 1.14 0.00 40.50 3.51
2939 12868 3.676324 CGACATGGTCCTGTTCTAACCTC 60.676 52.174 0.00 0.00 34.05 3.85
2951 12880 0.460987 CCTCTTCAGCGACATGGTCC 60.461 60.000 0.00 0.00 0.00 4.46
2961 12890 3.445805 AGCACTAACTCTACCTCTTCAGC 59.554 47.826 0.00 0.00 0.00 4.26
3146 13075 3.319198 GTTGCCACCGAGGGAGGA 61.319 66.667 2.06 0.00 39.73 3.71
3204 13133 2.593468 ATCACCATTCTCACCGGGCG 62.593 60.000 6.32 0.00 0.00 6.13
3251 13182 7.764443 TGTCATCAAATTCTTGTAGTAGTAGGC 59.236 37.037 0.00 0.00 33.94 3.93
3389 13320 3.629398 AGCATCACAAGCTTGCCTTATAC 59.371 43.478 26.27 9.98 39.87 1.47
3395 13326 0.170561 CAGAGCATCACAAGCTTGCC 59.829 55.000 26.27 9.58 43.58 4.52
3456 13387 2.347490 GGGAAGCGAAGGAGCACA 59.653 61.111 0.00 0.00 40.15 4.57
3457 13388 1.614241 TAGGGGAAGCGAAGGAGCAC 61.614 60.000 0.00 0.00 40.15 4.40
3462 13393 3.181454 ACACAATATAGGGGAAGCGAAGG 60.181 47.826 0.00 0.00 0.00 3.46
3485 13416 6.257630 ACATAACAAGTTGTGGCATTTTTGAC 59.742 34.615 9.79 0.00 36.22 3.18
3492 13423 5.528043 TTCAACATAACAAGTTGTGGCAT 57.472 34.783 9.79 0.81 44.97 4.40
3497 13428 8.399425 TGTTTACGATTCAACATAACAAGTTGT 58.601 29.630 1.64 1.64 44.97 3.32
3504 13435 8.280497 ACAACTCTGTTTACGATTCAACATAAC 58.720 33.333 0.00 0.00 32.50 1.89
3517 13448 9.797556 AATTTTTCCTGTAACAACTCTGTTTAC 57.202 29.630 0.00 0.00 43.45 2.01
3553 13484 0.397941 CACCAGTCACCCACACTCAT 59.602 55.000 0.00 0.00 0.00 2.90
3554 13485 1.695114 CCACCAGTCACCCACACTCA 61.695 60.000 0.00 0.00 0.00 3.41
3555 13486 1.071471 CCACCAGTCACCCACACTC 59.929 63.158 0.00 0.00 0.00 3.51
3575 13506 2.346803 CTACAAATCACCACACCCTCG 58.653 52.381 0.00 0.00 0.00 4.63
3581 13512 2.308570 AGGATGGCTACAAATCACCACA 59.691 45.455 0.00 0.00 34.36 4.17
3593 13524 1.134521 CACGGCTACAAAGGATGGCTA 60.135 52.381 0.00 0.00 0.00 3.93
3602 13533 1.015109 TTTGCGAACACGGCTACAAA 58.985 45.000 0.00 0.00 0.00 2.83
3612 13543 6.018589 TCCAAATTATGTGATTTGCGAACA 57.981 33.333 5.10 0.00 42.76 3.18
3623 13554 5.163693 GGGACGGTTAACTCCAAATTATGTG 60.164 44.000 14.08 0.00 0.00 3.21
3643 13574 4.353383 AGTCAGTAAAACAGAAGGGGAC 57.647 45.455 0.00 0.00 0.00 4.46
3644 13575 4.658901 AGAAGTCAGTAAAACAGAAGGGGA 59.341 41.667 0.00 0.00 0.00 4.81
3663 13594 6.811253 AGTCTGTACTAGTCTGTGAAGAAG 57.189 41.667 0.00 0.00 32.84 2.85
3678 13609 9.298250 TCCCATATAATGAGAACTAGTCTGTAC 57.702 37.037 0.00 0.00 36.41 2.90
3683 13614 7.175293 AGTCGTCCCATATAATGAGAACTAGTC 59.825 40.741 0.00 0.00 0.00 2.59
3684 13615 7.005296 AGTCGTCCCATATAATGAGAACTAGT 58.995 38.462 0.00 0.00 0.00 2.57
3690 13621 7.232188 ACTTAGAGTCGTCCCATATAATGAGA 58.768 38.462 0.00 0.00 0.00 3.27
3693 13624 6.868864 CCAACTTAGAGTCGTCCCATATAATG 59.131 42.308 0.00 0.00 0.00 1.90
3707 13638 5.045797 GGAAGGTTATGGTCCAACTTAGAGT 60.046 44.000 0.00 0.00 0.00 3.24
3711 13642 4.847512 TGAGGAAGGTTATGGTCCAACTTA 59.152 41.667 0.00 0.00 33.57 2.24
3715 13657 3.009033 CAGTGAGGAAGGTTATGGTCCAA 59.991 47.826 0.00 0.00 33.57 3.53
3716 13658 2.571653 CAGTGAGGAAGGTTATGGTCCA 59.428 50.000 0.00 0.00 33.57 4.02
3731 13673 5.118990 TCTGAAAGAGTTGTTTCCAGTGAG 58.881 41.667 0.00 0.00 38.67 3.51
3770 13712 4.399934 GGACGGAGGGAGTAGATGATTATC 59.600 50.000 0.00 0.00 0.00 1.75
3771 13713 4.345854 GGACGGAGGGAGTAGATGATTAT 58.654 47.826 0.00 0.00 0.00 1.28
3772 13714 3.764218 GGACGGAGGGAGTAGATGATTA 58.236 50.000 0.00 0.00 0.00 1.75
3784 13726 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3785 13727 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3786 13728 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3787 13729 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3788 13730 1.997606 GTGACAAGTATTTCCGGACGG 59.002 52.381 1.83 3.96 0.00 4.79
3789 13731 2.666508 CTGTGACAAGTATTTCCGGACG 59.333 50.000 1.83 0.00 0.00 4.79
3790 13732 3.921677 TCTGTGACAAGTATTTCCGGAC 58.078 45.455 1.83 0.00 0.00 4.79
3791 13733 4.610605 TTCTGTGACAAGTATTTCCGGA 57.389 40.909 0.00 0.00 0.00 5.14
3792 13734 5.631026 CATTTCTGTGACAAGTATTTCCGG 58.369 41.667 0.00 0.00 0.00 5.14
3793 13735 5.088739 GCATTTCTGTGACAAGTATTTCCG 58.911 41.667 0.00 0.00 0.00 4.30
3794 13736 6.012658 TGCATTTCTGTGACAAGTATTTCC 57.987 37.500 0.00 0.00 0.00 3.13
3795 13737 9.624697 TTTATGCATTTCTGTGACAAGTATTTC 57.375 29.630 3.54 0.00 0.00 2.17
3796 13738 9.979578 TTTTATGCATTTCTGTGACAAGTATTT 57.020 25.926 3.54 0.00 0.00 1.40
3797 13739 9.979578 TTTTTATGCATTTCTGTGACAAGTATT 57.020 25.926 3.54 0.00 0.00 1.89
3799 13741 9.409312 CATTTTTATGCATTTCTGTGACAAGTA 57.591 29.630 3.54 0.00 0.00 2.24
3800 13742 7.385752 CCATTTTTATGCATTTCTGTGACAAGT 59.614 33.333 3.54 0.00 0.00 3.16
3801 13743 7.599621 TCCATTTTTATGCATTTCTGTGACAAG 59.400 33.333 3.54 0.00 0.00 3.16
3802 13744 7.440198 TCCATTTTTATGCATTTCTGTGACAA 58.560 30.769 3.54 0.00 0.00 3.18
3803 13745 6.990798 TCCATTTTTATGCATTTCTGTGACA 58.009 32.000 3.54 0.00 0.00 3.58
3804 13746 7.546667 ACATCCATTTTTATGCATTTCTGTGAC 59.453 33.333 3.54 0.00 0.00 3.67
3805 13747 7.613585 ACATCCATTTTTATGCATTTCTGTGA 58.386 30.769 3.54 0.00 0.00 3.58
3806 13748 7.837202 ACATCCATTTTTATGCATTTCTGTG 57.163 32.000 3.54 0.00 0.00 3.66
3807 13749 9.754382 GATACATCCATTTTTATGCATTTCTGT 57.246 29.630 3.54 0.00 0.00 3.41
3808 13750 9.976511 AGATACATCCATTTTTATGCATTTCTG 57.023 29.630 3.54 0.00 0.00 3.02
3814 13756 9.851686 AGTTCTAGATACATCCATTTTTATGCA 57.148 29.630 0.00 0.00 0.00 3.96
3841 13783 8.949421 AGGAATGGATGTACCTAGACATATTTT 58.051 33.333 0.00 0.00 40.18 1.82
3842 13784 8.511748 AGGAATGGATGTACCTAGACATATTT 57.488 34.615 0.00 0.00 40.18 1.40
3843 13785 7.958583 AGAGGAATGGATGTACCTAGACATATT 59.041 37.037 0.00 0.00 40.18 1.28
3844 13786 7.398618 CAGAGGAATGGATGTACCTAGACATAT 59.601 40.741 0.00 0.00 40.18 1.78
3845 13787 6.721668 CAGAGGAATGGATGTACCTAGACATA 59.278 42.308 0.00 0.00 40.18 2.29
3846 13788 5.541868 CAGAGGAATGGATGTACCTAGACAT 59.458 44.000 0.00 0.00 42.82 3.06
3847 13789 4.895889 CAGAGGAATGGATGTACCTAGACA 59.104 45.833 0.00 0.00 39.86 3.41
3848 13790 5.010213 GTCAGAGGAATGGATGTACCTAGAC 59.990 48.000 0.00 0.00 39.86 2.59
3849 13791 5.141182 GTCAGAGGAATGGATGTACCTAGA 58.859 45.833 0.00 0.00 39.86 2.43
3850 13792 4.895889 TGTCAGAGGAATGGATGTACCTAG 59.104 45.833 0.00 0.00 39.86 3.02
3851 13793 4.878968 TGTCAGAGGAATGGATGTACCTA 58.121 43.478 0.00 0.00 39.86 3.08
3852 13794 3.724478 TGTCAGAGGAATGGATGTACCT 58.276 45.455 0.00 0.00 39.86 3.08
3853 13795 4.080863 ACTTGTCAGAGGAATGGATGTACC 60.081 45.833 0.00 0.00 39.54 3.34
3854 13796 5.091261 ACTTGTCAGAGGAATGGATGTAC 57.909 43.478 0.00 0.00 0.00 2.90
3855 13797 7.437713 AATACTTGTCAGAGGAATGGATGTA 57.562 36.000 0.00 0.00 0.00 2.29
3856 13798 5.965033 ATACTTGTCAGAGGAATGGATGT 57.035 39.130 0.00 0.00 0.00 3.06
3857 13799 6.261826 GGAAATACTTGTCAGAGGAATGGATG 59.738 42.308 0.00 0.00 0.00 3.51
3858 13800 6.360618 GGAAATACTTGTCAGAGGAATGGAT 58.639 40.000 0.00 0.00 0.00 3.41
3859 13801 5.626809 CGGAAATACTTGTCAGAGGAATGGA 60.627 44.000 0.00 0.00 0.00 3.41
3860 13802 4.572389 CGGAAATACTTGTCAGAGGAATGG 59.428 45.833 0.00 0.00 0.00 3.16
3861 13803 4.572389 CCGGAAATACTTGTCAGAGGAATG 59.428 45.833 0.00 0.00 0.00 2.67
3862 13804 4.469945 TCCGGAAATACTTGTCAGAGGAAT 59.530 41.667 0.00 0.00 0.00 3.01
3863 13805 3.835978 TCCGGAAATACTTGTCAGAGGAA 59.164 43.478 0.00 0.00 0.00 3.36
3864 13806 3.194968 GTCCGGAAATACTTGTCAGAGGA 59.805 47.826 5.23 0.00 0.00 3.71
3865 13807 3.056107 TGTCCGGAAATACTTGTCAGAGG 60.056 47.826 5.23 0.00 0.00 3.69
3866 13808 4.082190 TCTGTCCGGAAATACTTGTCAGAG 60.082 45.833 5.23 0.00 0.00 3.35
3867 13809 3.830178 TCTGTCCGGAAATACTTGTCAGA 59.170 43.478 5.23 8.75 0.00 3.27
3868 13810 4.177026 CTCTGTCCGGAAATACTTGTCAG 58.823 47.826 5.23 6.12 0.00 3.51
3869 13811 3.056107 CCTCTGTCCGGAAATACTTGTCA 60.056 47.826 5.23 0.00 0.00 3.58
3870 13812 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
3871 13813 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
3872 13814 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
3873 13815 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
3874 13816 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
3875 13817 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
3876 13818 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
3877 13819 2.108970 GTACTCCCTCTGTCCGGAAAT 58.891 52.381 5.23 0.00 0.00 2.17
3878 13820 1.076677 AGTACTCCCTCTGTCCGGAAA 59.923 52.381 5.23 0.00 0.00 3.13
3879 13821 0.702902 AGTACTCCCTCTGTCCGGAA 59.297 55.000 5.23 0.00 0.00 4.30
3880 13822 0.702902 AAGTACTCCCTCTGTCCGGA 59.297 55.000 0.00 0.00 0.00 5.14
3881 13823 1.204941 CAAAGTACTCCCTCTGTCCGG 59.795 57.143 0.00 0.00 0.00 5.14
3882 13824 2.168496 TCAAAGTACTCCCTCTGTCCG 58.832 52.381 0.00 0.00 0.00 4.79
3883 13825 5.934402 TTATCAAAGTACTCCCTCTGTCC 57.066 43.478 0.00 0.00 0.00 4.02
3884 13826 9.886132 TTTATTTATCAAAGTACTCCCTCTGTC 57.114 33.333 0.00 0.00 0.00 3.51
3885 13827 9.892130 CTTTATTTATCAAAGTACTCCCTCTGT 57.108 33.333 0.00 0.00 0.00 3.41
3897 13839 9.512435 CCTTGCAGTCATCTTTATTTATCAAAG 57.488 33.333 0.00 0.00 34.87 2.77
3898 13840 9.241919 TCCTTGCAGTCATCTTTATTTATCAAA 57.758 29.630 0.00 0.00 0.00 2.69
3899 13841 8.677300 GTCCTTGCAGTCATCTTTATTTATCAA 58.323 33.333 0.00 0.00 0.00 2.57
3900 13842 7.828717 TGTCCTTGCAGTCATCTTTATTTATCA 59.171 33.333 0.00 0.00 0.00 2.15
3901 13843 8.213518 TGTCCTTGCAGTCATCTTTATTTATC 57.786 34.615 0.00 0.00 0.00 1.75
3902 13844 8.579850 TTGTCCTTGCAGTCATCTTTATTTAT 57.420 30.769 0.00 0.00 0.00 1.40
3903 13845 7.121168 CCTTGTCCTTGCAGTCATCTTTATTTA 59.879 37.037 0.00 0.00 0.00 1.40
3904 13846 6.071728 CCTTGTCCTTGCAGTCATCTTTATTT 60.072 38.462 0.00 0.00 0.00 1.40
3905 13847 5.416952 CCTTGTCCTTGCAGTCATCTTTATT 59.583 40.000 0.00 0.00 0.00 1.40
3918 13860 1.680338 ACAACACTCCTTGTCCTTGC 58.320 50.000 0.00 0.00 37.51 4.01
3919 13861 3.139077 GGTACAACACTCCTTGTCCTTG 58.861 50.000 0.00 0.00 37.51 3.61
3925 13867 2.494059 CCACAGGTACAACACTCCTTG 58.506 52.381 0.00 0.00 0.00 3.61
3935 13877 1.119684 ATAGCGATGCCACAGGTACA 58.880 50.000 0.00 0.00 0.00 2.90
3941 13883 3.069443 TCTCAACATATAGCGATGCCACA 59.931 43.478 0.00 0.00 0.00 4.17
3947 13889 5.918608 ACCAAGTTCTCAACATATAGCGAT 58.081 37.500 0.00 0.00 0.00 4.58
3948 13890 5.105513 TGACCAAGTTCTCAACATATAGCGA 60.106 40.000 0.00 0.00 0.00 4.93
3949 13891 5.109210 TGACCAAGTTCTCAACATATAGCG 58.891 41.667 0.00 0.00 0.00 4.26
3951 13893 7.604164 ACAACTGACCAAGTTCTCAACATATAG 59.396 37.037 0.00 0.00 46.60 1.31
3952 13894 7.450074 ACAACTGACCAAGTTCTCAACATATA 58.550 34.615 0.00 0.00 46.60 0.86
3953 13895 6.299141 ACAACTGACCAAGTTCTCAACATAT 58.701 36.000 0.00 0.00 46.60 1.78
3960 13905 4.561105 CTCCTACAACTGACCAAGTTCTC 58.439 47.826 0.00 0.00 46.60 2.87
3968 13913 0.321671 TGCAGCTCCTACAACTGACC 59.678 55.000 0.00 0.00 33.10 4.02
3976 13921 3.543680 TCCAAATACTGCAGCTCCTAC 57.456 47.619 15.27 0.00 0.00 3.18
3983 13928 6.678900 GCCAGAAACTTATCCAAATACTGCAG 60.679 42.308 13.48 13.48 0.00 4.41
3984 13929 5.125417 GCCAGAAACTTATCCAAATACTGCA 59.875 40.000 0.00 0.00 0.00 4.41
3987 13932 5.358160 GCAGCCAGAAACTTATCCAAATACT 59.642 40.000 0.00 0.00 0.00 2.12
3988 13933 5.125417 TGCAGCCAGAAACTTATCCAAATAC 59.875 40.000 0.00 0.00 0.00 1.89
3989 13934 5.260424 TGCAGCCAGAAACTTATCCAAATA 58.740 37.500 0.00 0.00 0.00 1.40
4102 14409 4.591072 AGAGGCTTAGTGACAAGACTTCTT 59.409 41.667 4.96 0.00 44.18 2.52
4103 14410 4.021544 CAGAGGCTTAGTGACAAGACTTCT 60.022 45.833 4.96 2.45 44.18 2.85
4105 14412 3.898123 TCAGAGGCTTAGTGACAAGACTT 59.102 43.478 4.96 0.00 44.18 3.01
4115 14422 2.563179 ACGACAACATCAGAGGCTTAGT 59.437 45.455 0.00 0.00 0.00 2.24
4151 14458 3.756963 ACGGAATTTTTACTCAAGGGCTC 59.243 43.478 0.00 0.00 0.00 4.70
4153 14460 3.833442 CACGGAATTTTTACTCAAGGGC 58.167 45.455 0.00 0.00 0.00 5.19
4186 14493 0.040067 CTCGGTTTCTTGCCACTTGC 60.040 55.000 0.00 0.00 41.77 4.01
4187 14494 0.040067 GCTCGGTTTCTTGCCACTTG 60.040 55.000 0.00 0.00 0.00 3.16
4188 14495 0.179018 AGCTCGGTTTCTTGCCACTT 60.179 50.000 0.00 0.00 0.00 3.16
4189 14496 0.603975 GAGCTCGGTTTCTTGCCACT 60.604 55.000 0.00 0.00 0.00 4.00
4190 14497 0.603975 AGAGCTCGGTTTCTTGCCAC 60.604 55.000 8.37 0.00 0.00 5.01
4212 14519 2.317609 GCGGTTGATGTCTGCGTGT 61.318 57.895 0.00 0.00 0.00 4.49
4231 14538 0.454957 GAAATGTTGCGCGTGATGCT 60.455 50.000 8.43 0.00 43.27 3.79
4232 14539 0.454957 AGAAATGTTGCGCGTGATGC 60.455 50.000 8.43 0.00 41.47 3.91
4233 14540 1.129251 AGAGAAATGTTGCGCGTGATG 59.871 47.619 8.43 0.00 0.00 3.07
4234 14541 1.129251 CAGAGAAATGTTGCGCGTGAT 59.871 47.619 8.43 0.00 0.00 3.06
4235 14542 0.512518 CAGAGAAATGTTGCGCGTGA 59.487 50.000 8.43 0.00 0.00 4.35
4236 14543 0.453282 CCAGAGAAATGTTGCGCGTG 60.453 55.000 8.43 0.00 0.00 5.34
4237 14544 1.868997 CCAGAGAAATGTTGCGCGT 59.131 52.632 8.43 0.00 0.00 6.01
4238 14545 1.512734 GCCAGAGAAATGTTGCGCG 60.513 57.895 0.00 0.00 0.00 6.86
4240 14547 1.741706 AGATGCCAGAGAAATGTTGCG 59.258 47.619 0.00 0.00 0.00 4.85
4241 14548 3.015327 AGAGATGCCAGAGAAATGTTGC 58.985 45.455 0.00 0.00 0.00 4.17
4242 14549 3.626670 GGAGAGATGCCAGAGAAATGTTG 59.373 47.826 0.00 0.00 0.00 3.33
4243 14550 3.265221 TGGAGAGATGCCAGAGAAATGTT 59.735 43.478 0.00 0.00 0.00 2.71
4244 14551 2.842496 TGGAGAGATGCCAGAGAAATGT 59.158 45.455 0.00 0.00 0.00 2.71
4245 14552 3.555527 TGGAGAGATGCCAGAGAAATG 57.444 47.619 0.00 0.00 0.00 2.32
4246 14553 4.263639 TGTTTGGAGAGATGCCAGAGAAAT 60.264 41.667 0.00 0.00 36.64 2.17
4247 14554 3.072915 TGTTTGGAGAGATGCCAGAGAAA 59.927 43.478 0.00 0.00 36.64 2.52
4248 14555 2.639347 TGTTTGGAGAGATGCCAGAGAA 59.361 45.455 0.00 0.00 36.64 2.87
4249 14556 2.235650 CTGTTTGGAGAGATGCCAGAGA 59.764 50.000 0.00 0.00 36.64 3.10
4250 14557 2.630158 CTGTTTGGAGAGATGCCAGAG 58.370 52.381 0.00 0.00 36.64 3.35
4251 14558 1.280133 CCTGTTTGGAGAGATGCCAGA 59.720 52.381 0.00 0.00 36.64 3.86
4252 14559 1.747709 CCTGTTTGGAGAGATGCCAG 58.252 55.000 0.00 0.00 36.64 4.85
4253 14560 0.322816 GCCTGTTTGGAGAGATGCCA 60.323 55.000 0.00 0.00 38.35 4.92
4254 14561 1.034292 GGCCTGTTTGGAGAGATGCC 61.034 60.000 0.00 0.00 38.35 4.40
4255 14562 1.372087 CGGCCTGTTTGGAGAGATGC 61.372 60.000 0.00 0.00 38.35 3.91
4256 14563 1.372087 GCGGCCTGTTTGGAGAGATG 61.372 60.000 0.00 0.00 38.35 2.90
4257 14564 1.078143 GCGGCCTGTTTGGAGAGAT 60.078 57.895 0.00 0.00 38.35 2.75
4258 14565 2.347490 GCGGCCTGTTTGGAGAGA 59.653 61.111 0.00 0.00 38.35 3.10
4259 14566 2.032528 TGCGGCCTGTTTGGAGAG 59.967 61.111 0.00 0.00 38.35 3.20
4260 14567 2.032528 CTGCGGCCTGTTTGGAGA 59.967 61.111 0.00 0.00 38.35 3.71
4261 14568 3.058160 CCTGCGGCCTGTTTGGAG 61.058 66.667 0.00 0.00 38.35 3.86
4262 14569 3.565214 TCCTGCGGCCTGTTTGGA 61.565 61.111 0.00 0.00 38.35 3.53
4263 14570 3.365265 GTCCTGCGGCCTGTTTGG 61.365 66.667 0.00 0.00 39.35 3.28
4264 14571 1.973281 ATGTCCTGCGGCCTGTTTG 60.973 57.895 0.00 0.00 0.00 2.93
4265 14572 1.973281 CATGTCCTGCGGCCTGTTT 60.973 57.895 0.00 0.00 0.00 2.83
4266 14573 2.360350 CATGTCCTGCGGCCTGTT 60.360 61.111 0.00 0.00 0.00 3.16
4267 14574 3.640407 ACATGTCCTGCGGCCTGT 61.640 61.111 0.00 0.00 0.00 4.00
4268 14575 3.129502 CACATGTCCTGCGGCCTG 61.130 66.667 0.00 0.00 0.00 4.85
4269 14576 3.640407 ACACATGTCCTGCGGCCT 61.640 61.111 0.00 0.00 0.00 5.19
4270 14577 3.434319 CACACATGTCCTGCGGCC 61.434 66.667 0.00 0.00 0.00 6.13
4271 14578 2.669569 ACACACATGTCCTGCGGC 60.670 61.111 0.00 0.00 31.55 6.53
4272 14579 1.165907 AACACACACATGTCCTGCGG 61.166 55.000 0.00 0.00 36.72 5.69
4273 14580 0.235665 GAACACACACATGTCCTGCG 59.764 55.000 0.00 0.00 36.72 5.18
4274 14581 0.235665 CGAACACACACATGTCCTGC 59.764 55.000 0.00 0.00 36.72 4.85
4275 14582 1.581934 ACGAACACACACATGTCCTG 58.418 50.000 0.00 0.00 36.72 3.86
4276 14583 2.210116 GAACGAACACACACATGTCCT 58.790 47.619 0.00 0.00 36.72 3.85
4277 14584 1.263217 GGAACGAACACACACATGTCC 59.737 52.381 0.00 0.00 36.72 4.02
4278 14585 1.937223 TGGAACGAACACACACATGTC 59.063 47.619 0.00 0.00 36.72 3.06
4279 14586 2.031258 TGGAACGAACACACACATGT 57.969 45.000 0.00 0.00 40.80 3.21
4280 14587 2.547634 TGATGGAACGAACACACACATG 59.452 45.455 0.00 0.00 0.00 3.21
4281 14588 2.807967 CTGATGGAACGAACACACACAT 59.192 45.455 0.00 0.00 0.00 3.21
4282 14589 2.209273 CTGATGGAACGAACACACACA 58.791 47.619 0.00 0.00 0.00 3.72
4283 14590 1.531149 CCTGATGGAACGAACACACAC 59.469 52.381 0.00 0.00 34.57 3.82
4284 14591 1.877637 CCTGATGGAACGAACACACA 58.122 50.000 0.00 0.00 34.57 3.72
4285 14592 0.517316 GCCTGATGGAACGAACACAC 59.483 55.000 0.00 0.00 34.57 3.82
4286 14593 0.948623 CGCCTGATGGAACGAACACA 60.949 55.000 0.00 0.00 34.57 3.72
4287 14594 0.949105 ACGCCTGATGGAACGAACAC 60.949 55.000 0.00 0.00 34.57 3.32
4288 14595 0.669318 GACGCCTGATGGAACGAACA 60.669 55.000 0.00 0.00 34.57 3.18
4289 14596 0.669318 TGACGCCTGATGGAACGAAC 60.669 55.000 0.00 0.00 34.57 3.95
4290 14597 0.669318 GTGACGCCTGATGGAACGAA 60.669 55.000 0.00 0.00 34.57 3.85
4291 14598 1.080093 GTGACGCCTGATGGAACGA 60.080 57.895 0.00 0.00 34.57 3.85
4292 14599 2.100631 GGTGACGCCTGATGGAACG 61.101 63.158 0.00 0.00 34.57 3.95
4293 14600 1.003839 TGGTGACGCCTGATGGAAC 60.004 57.895 6.60 0.00 38.35 3.62
4294 14601 1.003839 GTGGTGACGCCTGATGGAA 60.004 57.895 6.60 0.00 38.35 3.53
4295 14602 2.662596 GTGGTGACGCCTGATGGA 59.337 61.111 6.60 0.00 38.35 3.41
4296 14603 2.815211 CGTGGTGACGCCTGATGG 60.815 66.667 6.60 0.00 39.10 3.51
4311 14618 4.954118 TGCCAGGACAGGGGACGT 62.954 66.667 0.00 0.00 0.00 4.34
4312 14619 4.394712 GTGCCAGGACAGGGGACG 62.395 72.222 0.00 0.00 37.01 4.79
4313 14620 2.351924 TTTGTGCCAGGACAGGGGAC 62.352 60.000 0.00 0.00 45.91 4.46
4314 14621 2.081787 TTTGTGCCAGGACAGGGGA 61.082 57.895 0.00 0.00 0.00 4.81
4315 14622 1.903404 GTTTGTGCCAGGACAGGGG 60.903 63.158 0.00 0.00 0.00 4.79
4316 14623 0.540365 ATGTTTGTGCCAGGACAGGG 60.540 55.000 0.00 0.00 0.00 4.45
4317 14624 0.599558 CATGTTTGTGCCAGGACAGG 59.400 55.000 0.00 0.00 0.00 4.00
4318 14625 0.038892 GCATGTTTGTGCCAGGACAG 60.039 55.000 0.00 0.00 39.18 3.51
4319 14626 0.467844 AGCATGTTTGTGCCAGGACA 60.468 50.000 0.00 0.00 46.19 4.02
4320 14627 1.470098 CTAGCATGTTTGTGCCAGGAC 59.530 52.381 0.00 0.00 46.19 3.85
4321 14628 1.825090 CTAGCATGTTTGTGCCAGGA 58.175 50.000 0.00 0.00 46.19 3.86
4322 14629 0.171903 GCTAGCATGTTTGTGCCAGG 59.828 55.000 10.63 0.00 46.19 4.45
4323 14630 0.883153 TGCTAGCATGTTTGTGCCAG 59.117 50.000 14.93 0.00 46.19 4.85
4324 14631 1.548081 ATGCTAGCATGTTTGTGCCA 58.452 45.000 29.08 0.00 46.19 4.92
4325 14632 3.344904 CTATGCTAGCATGTTTGTGCC 57.655 47.619 35.20 0.00 46.19 5.01
4337 14644 0.038709 GGCTGGAGACGCTATGCTAG 60.039 60.000 0.00 0.00 0.00 3.42
4338 14645 0.755327 TGGCTGGAGACGCTATGCTA 60.755 55.000 0.00 0.00 0.00 3.49
4339 14646 2.060383 TGGCTGGAGACGCTATGCT 61.060 57.895 0.00 0.00 0.00 3.79
4340 14647 1.884926 GTGGCTGGAGACGCTATGC 60.885 63.158 0.00 0.00 0.00 3.14
4341 14648 1.227380 GGTGGCTGGAGACGCTATG 60.227 63.158 0.00 0.00 33.16 2.23
4342 14649 1.685765 TGGTGGCTGGAGACGCTAT 60.686 57.895 0.00 0.00 33.16 2.97
4343 14650 2.283604 TGGTGGCTGGAGACGCTA 60.284 61.111 0.00 0.00 33.16 4.26
4344 14651 4.008933 GTGGTGGCTGGAGACGCT 62.009 66.667 0.00 0.00 33.16 5.07
4346 14653 3.515316 AACGTGGTGGCTGGAGACG 62.515 63.158 0.00 0.00 36.14 4.18
4347 14654 1.668151 GAACGTGGTGGCTGGAGAC 60.668 63.158 0.00 0.00 0.00 3.36
4348 14655 2.741092 GAACGTGGTGGCTGGAGA 59.259 61.111 0.00 0.00 0.00 3.71
4349 14656 2.358737 GGAACGTGGTGGCTGGAG 60.359 66.667 0.00 0.00 0.00 3.86
4350 14657 2.847234 AGGAACGTGGTGGCTGGA 60.847 61.111 0.00 0.00 0.00 3.86
4351 14658 2.669569 CAGGAACGTGGTGGCTGG 60.670 66.667 0.00 0.00 0.00 4.85
4352 14659 2.669569 CCAGGAACGTGGTGGCTG 60.670 66.667 5.51 0.00 32.32 4.85
4358 14665 0.035439 AATGGCTACCAGGAACGTGG 60.035 55.000 11.28 11.28 44.01 4.94
4359 14666 1.737793 GAAATGGCTACCAGGAACGTG 59.262 52.381 0.00 0.00 36.75 4.49
4360 14667 1.674817 CGAAATGGCTACCAGGAACGT 60.675 52.381 0.00 0.00 36.75 3.99
4361 14668 1.006832 CGAAATGGCTACCAGGAACG 58.993 55.000 0.00 0.00 36.75 3.95
4362 14669 2.007608 GACGAAATGGCTACCAGGAAC 58.992 52.381 0.00 0.00 36.75 3.62
4363 14670 1.404986 CGACGAAATGGCTACCAGGAA 60.405 52.381 0.00 0.00 36.75 3.36
4364 14671 0.174845 CGACGAAATGGCTACCAGGA 59.825 55.000 0.00 0.00 36.75 3.86
4365 14672 0.174845 TCGACGAAATGGCTACCAGG 59.825 55.000 0.00 0.00 36.75 4.45
4366 14673 1.560923 CTCGACGAAATGGCTACCAG 58.439 55.000 0.00 0.00 36.75 4.00
4367 14674 0.459585 GCTCGACGAAATGGCTACCA 60.460 55.000 0.00 0.00 38.19 3.25
4368 14675 0.459585 TGCTCGACGAAATGGCTACC 60.460 55.000 0.00 0.00 0.00 3.18
4369 14676 0.645868 GTGCTCGACGAAATGGCTAC 59.354 55.000 0.00 0.00 0.00 3.58
4370 14677 0.459585 GGTGCTCGACGAAATGGCTA 60.460 55.000 0.00 0.00 0.00 3.93
4371 14678 1.741770 GGTGCTCGACGAAATGGCT 60.742 57.895 0.00 0.00 0.00 4.75
4372 14679 2.750888 GGGTGCTCGACGAAATGGC 61.751 63.158 0.00 0.00 0.00 4.40
4373 14680 1.079127 AGGGTGCTCGACGAAATGG 60.079 57.895 0.00 0.00 0.00 3.16
4374 14681 1.084370 GGAGGGTGCTCGACGAAATG 61.084 60.000 0.00 0.00 0.00 2.32
4375 14682 1.218316 GGAGGGTGCTCGACGAAAT 59.782 57.895 0.00 0.00 0.00 2.17
4376 14683 1.469335 AAGGAGGGTGCTCGACGAAA 61.469 55.000 0.00 0.00 0.00 3.46
4377 14684 1.906824 AAGGAGGGTGCTCGACGAA 60.907 57.895 0.00 0.00 0.00 3.85
4378 14685 2.282958 AAGGAGGGTGCTCGACGA 60.283 61.111 0.00 0.00 0.00 4.20
4379 14686 2.125912 CAAGGAGGGTGCTCGACG 60.126 66.667 0.00 0.00 0.00 5.12
4380 14687 2.435059 GCAAGGAGGGTGCTCGAC 60.435 66.667 0.00 0.00 39.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.