Multiple sequence alignment - TraesCS6B01G454700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G454700 chr6B 100.000 2687 0 0 1 2687 712191276 712193962 0.000000e+00 4963.0
1 TraesCS6B01G454700 chr6B 83.889 180 23 6 594 770 75671071 75670895 1.650000e-37 167.0
2 TraesCS6B01G454700 chr6B 97.500 40 1 0 936 975 78591411 78591450 4.800000e-08 69.4
3 TraesCS6B01G454700 chr6B 84.615 65 8 2 938 1001 79343527 79343464 2.230000e-06 63.9
4 TraesCS6B01G454700 chr6A 92.321 1198 64 15 527 1702 613266990 613268181 0.000000e+00 1677.0
5 TraesCS6B01G454700 chr6A 82.967 182 21 8 594 770 39949739 39949563 3.580000e-34 156.0
6 TraesCS6B01G454700 chr6D 81.781 1707 233 57 1009 2680 466956690 466958353 0.000000e+00 1358.0
7 TraesCS6B01G454700 chr6D 93.108 827 57 0 551 1377 466999074 466999900 0.000000e+00 1212.0
8 TraesCS6B01G454700 chr6D 77.933 1500 253 35 570 2018 454013549 454012077 0.000000e+00 865.0
9 TraesCS6B01G454700 chr6D 92.706 521 38 0 947 1467 466971400 466971920 0.000000e+00 752.0
10 TraesCS6B01G454700 chr6D 78.705 803 108 43 1500 2285 467005663 467006419 6.730000e-131 477.0
11 TraesCS6B01G454700 chr6D 84.431 167 24 2 594 759 30067470 30067305 2.140000e-36 163.0
12 TraesCS6B01G454700 chr6D 83.333 180 24 6 594 770 36125007 36124831 7.700000e-36 161.0
13 TraesCS6B01G454700 chr6D 96.970 66 2 0 331 396 466998896 466998961 7.860000e-21 111.0
14 TraesCS6B01G454700 chr2B 100.000 194 0 0 1 194 597223228 597223421 2.540000e-95 359.0
15 TraesCS6B01G454700 chr2B 98.454 194 3 0 1 194 77779403 77779596 2.560000e-90 342.0
16 TraesCS6B01G454700 chr5A 100.000 193 0 0 1 193 683947085 683947277 9.150000e-95 357.0
17 TraesCS6B01G454700 chr7B 98.462 195 2 1 1 194 120740383 120740577 2.560000e-90 342.0
18 TraesCS6B01G454700 chr7B 98.454 194 3 0 1 194 717329099 717328906 2.560000e-90 342.0
19 TraesCS6B01G454700 chr3B 98.454 194 3 0 1 194 160630477 160630670 2.560000e-90 342.0
20 TraesCS6B01G454700 chr3B 97.959 196 4 0 1 196 754210427 754210622 9.210000e-90 340.0
21 TraesCS6B01G454700 chr2A 98.454 194 3 0 1 194 432590620 432590427 2.560000e-90 342.0
22 TraesCS6B01G454700 chr4B 97.959 196 4 0 1 196 40215420 40215225 9.210000e-90 340.0
23 TraesCS6B01G454700 chr3D 85.799 169 18 6 594 759 497810835 497810670 9.890000e-40 174.0
24 TraesCS6B01G454700 chr5D 85.207 169 19 6 594 759 533536285 533536120 4.600000e-38 169.0
25 TraesCS6B01G454700 chrUn 84.615 65 8 2 938 1001 327369186 327369123 2.230000e-06 63.9
26 TraesCS6B01G454700 chrUn 83.099 71 9 2 938 1008 327372193 327372126 8.030000e-06 62.1
27 TraesCS6B01G454700 chrUn 85.965 57 6 2 944 998 27974175 27974119 2.890000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G454700 chr6B 712191276 712193962 2686 False 4963.0 4963 100.000 1 2687 1 chr6B.!!$F2 2686
1 TraesCS6B01G454700 chr6A 613266990 613268181 1191 False 1677.0 1677 92.321 527 1702 1 chr6A.!!$F1 1175
2 TraesCS6B01G454700 chr6D 466956690 466958353 1663 False 1358.0 1358 81.781 1009 2680 1 chr6D.!!$F1 1671
3 TraesCS6B01G454700 chr6D 454012077 454013549 1472 True 865.0 865 77.933 570 2018 1 chr6D.!!$R3 1448
4 TraesCS6B01G454700 chr6D 466971400 466971920 520 False 752.0 752 92.706 947 1467 1 chr6D.!!$F2 520
5 TraesCS6B01G454700 chr6D 466998896 466999900 1004 False 661.5 1212 95.039 331 1377 2 chr6D.!!$F4 1046
6 TraesCS6B01G454700 chr6D 467005663 467006419 756 False 477.0 477 78.705 1500 2285 1 chr6D.!!$F3 785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.0 4.96 0.00 31.08 2.90 F
140 141 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.0 0.00 0.00 0.00 4.02 F
401 402 0.036858 GAGATAAGGCTGGCCCGATC 60.037 60.0 8.11 10.88 39.21 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1398 1441 1.002033 GCATCATCACCGCCATTCTTC 60.002 52.381 0.0 0.0 0.0 2.87 R
1406 1449 1.233019 ATTAGCAGCATCATCACCGC 58.767 50.000 0.0 0.0 0.0 5.68 R
2295 2422 1.413445 ACCTACCACGTAACACTGCAA 59.587 47.619 0.0 0.0 0.0 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.032528 TGCGCTTTCAGTGGGAGG 59.967 61.111 9.73 0.00 0.00 4.30
18 19 2.347490 GCGCTTTCAGTGGGAGGA 59.653 61.111 0.00 0.00 0.00 3.71
19 20 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
20 21 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
21 22 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
22 23 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
23 24 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
24 25 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
25 26 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
48 49 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
51 52 4.125695 GACGAGGCGCCTACGGTT 62.126 66.667 34.97 23.48 40.57 4.44
52 53 4.430765 ACGAGGCGCCTACGGTTG 62.431 66.667 34.97 21.03 40.57 3.77
54 55 4.452733 GAGGCGCCTACGGTTGCT 62.453 66.667 32.97 3.02 40.57 3.91
55 56 3.952628 GAGGCGCCTACGGTTGCTT 62.953 63.158 32.97 2.04 40.57 3.91
56 57 3.497031 GGCGCCTACGGTTGCTTC 61.497 66.667 22.15 0.00 40.57 3.86
57 58 3.849953 GCGCCTACGGTTGCTTCG 61.850 66.667 0.00 0.00 40.57 3.79
58 59 2.431942 CGCCTACGGTTGCTTCGT 60.432 61.111 5.13 5.13 43.64 3.85
59 60 1.153978 CGCCTACGGTTGCTTCGTA 60.154 57.895 6.60 6.60 41.38 3.43
60 61 0.733566 CGCCTACGGTTGCTTCGTAA 60.734 55.000 7.80 0.00 41.62 3.18
61 62 1.431496 GCCTACGGTTGCTTCGTAAA 58.569 50.000 7.80 0.00 41.62 2.01
62 63 2.004733 GCCTACGGTTGCTTCGTAAAT 58.995 47.619 7.80 0.00 41.62 1.40
63 64 2.030091 GCCTACGGTTGCTTCGTAAATC 59.970 50.000 7.80 0.00 41.62 2.17
64 65 3.518590 CCTACGGTTGCTTCGTAAATCT 58.481 45.455 7.80 0.00 41.62 2.40
65 66 3.550678 CCTACGGTTGCTTCGTAAATCTC 59.449 47.826 7.80 0.00 41.62 2.75
66 67 3.034721 ACGGTTGCTTCGTAAATCTCA 57.965 42.857 0.00 0.00 39.22 3.27
67 68 3.395639 ACGGTTGCTTCGTAAATCTCAA 58.604 40.909 0.00 0.00 39.22 3.02
68 69 3.432252 ACGGTTGCTTCGTAAATCTCAAG 59.568 43.478 0.00 0.00 39.22 3.02
69 70 3.678072 CGGTTGCTTCGTAAATCTCAAGA 59.322 43.478 0.00 0.00 0.00 3.02
70 71 4.330074 CGGTTGCTTCGTAAATCTCAAGAT 59.670 41.667 0.00 0.00 36.07 2.40
71 72 5.563842 GGTTGCTTCGTAAATCTCAAGATG 58.436 41.667 0.00 0.00 34.49 2.90
72 73 5.351465 GGTTGCTTCGTAAATCTCAAGATGA 59.649 40.000 0.00 0.00 34.49 2.92
73 74 6.037610 GGTTGCTTCGTAAATCTCAAGATGAT 59.962 38.462 0.00 0.00 34.49 2.45
74 75 7.224753 GGTTGCTTCGTAAATCTCAAGATGATA 59.775 37.037 0.00 0.00 34.49 2.15
75 76 8.768955 GTTGCTTCGTAAATCTCAAGATGATAT 58.231 33.333 0.00 0.00 34.49 1.63
76 77 8.302965 TGCTTCGTAAATCTCAAGATGATATG 57.697 34.615 0.00 0.00 34.49 1.78
77 78 7.095481 TGCTTCGTAAATCTCAAGATGATATGC 60.095 37.037 0.00 0.00 34.49 3.14
78 79 7.623089 GCTTCGTAAATCTCAAGATGATATGCC 60.623 40.741 0.00 0.00 34.49 4.40
79 80 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
80 81 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
81 82 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
82 83 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
83 84 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
84 85 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
85 86 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
86 87 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
87 88 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
88 89 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
89 90 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
90 91 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
91 92 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
92 93 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
93 94 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
94 95 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
95 96 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
96 97 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
97 98 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
98 99 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
99 100 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
100 101 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
101 102 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
102 103 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
103 104 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
104 105 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
105 106 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
106 107 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
107 108 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
108 109 1.457643 TCGGAGGTGCTCATAGGGG 60.458 63.158 0.00 0.00 31.08 4.79
109 110 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
110 111 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
111 112 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
112 113 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
113 114 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
114 115 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
115 116 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
116 117 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
117 118 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
118 119 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
119 120 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
120 121 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
121 122 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
122 123 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
123 124 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
124 125 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
125 126 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
126 127 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
129 130 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
130 131 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
131 132 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
132 133 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
133 134 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
134 135 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
135 136 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
136 137 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
137 138 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
138 139 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
139 140 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
140 141 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
141 142 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
142 143 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
143 144 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
144 145 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
145 146 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
146 147 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
147 148 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
148 149 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
149 150 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
150 151 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
151 152 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
152 153 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
153 154 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
154 155 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
155 156 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
156 157 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
157 158 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
158 159 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
159 160 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
160 161 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
161 162 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
162 163 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
165 166 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
166 167 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
167 168 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
168 169 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
169 170 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
170 171 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
171 172 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
172 173 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
173 174 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
174 175 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
175 176 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
176 177 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
177 178 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
178 179 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
179 180 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
180 181 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
181 182 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
182 183 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
183 184 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
184 185 2.670414 GCTTGTGTCTGTACTGATGCTC 59.330 50.000 5.69 0.00 0.00 4.26
185 186 3.862264 GCTTGTGTCTGTACTGATGCTCA 60.862 47.826 5.69 0.00 0.00 4.26
186 187 4.309933 CTTGTGTCTGTACTGATGCTCAA 58.690 43.478 5.69 6.69 0.00 3.02
187 188 4.335400 TGTGTCTGTACTGATGCTCAAA 57.665 40.909 5.69 0.00 0.00 2.69
188 189 4.702831 TGTGTCTGTACTGATGCTCAAAA 58.297 39.130 5.69 0.00 0.00 2.44
189 190 5.122519 TGTGTCTGTACTGATGCTCAAAAA 58.877 37.500 5.69 0.00 0.00 1.94
211 212 5.357742 AAAAATTTGGGTGTTGAGAAGCT 57.642 34.783 0.00 0.00 0.00 3.74
212 213 4.326504 AAATTTGGGTGTTGAGAAGCTG 57.673 40.909 0.00 0.00 0.00 4.24
213 214 2.727123 TTTGGGTGTTGAGAAGCTGA 57.273 45.000 0.00 0.00 0.00 4.26
214 215 1.967319 TTGGGTGTTGAGAAGCTGAC 58.033 50.000 0.00 0.00 0.00 3.51
215 216 0.836606 TGGGTGTTGAGAAGCTGACA 59.163 50.000 0.00 0.00 0.00 3.58
216 217 1.230324 GGGTGTTGAGAAGCTGACAC 58.770 55.000 0.00 0.00 41.14 3.67
217 218 1.202698 GGGTGTTGAGAAGCTGACACT 60.203 52.381 13.58 1.52 41.49 3.55
218 219 2.565841 GGTGTTGAGAAGCTGACACTT 58.434 47.619 13.58 0.00 41.49 3.16
219 220 2.289002 GGTGTTGAGAAGCTGACACTTG 59.711 50.000 13.58 0.00 41.49 3.16
220 221 2.939103 GTGTTGAGAAGCTGACACTTGT 59.061 45.455 0.00 0.00 39.33 3.16
221 222 3.375299 GTGTTGAGAAGCTGACACTTGTT 59.625 43.478 0.00 0.00 39.33 2.83
222 223 4.009675 TGTTGAGAAGCTGACACTTGTTT 58.990 39.130 0.00 0.00 0.00 2.83
223 224 4.458989 TGTTGAGAAGCTGACACTTGTTTT 59.541 37.500 0.00 0.00 0.00 2.43
224 225 5.048083 TGTTGAGAAGCTGACACTTGTTTTT 60.048 36.000 0.00 0.00 0.00 1.94
251 252 5.796350 ACTGTTTTACCGTGAATATGAGC 57.204 39.130 0.00 0.00 0.00 4.26
252 253 5.242434 ACTGTTTTACCGTGAATATGAGCA 58.758 37.500 0.00 0.00 0.00 4.26
253 254 5.880332 ACTGTTTTACCGTGAATATGAGCAT 59.120 36.000 0.00 0.00 0.00 3.79
254 255 7.045416 ACTGTTTTACCGTGAATATGAGCATA 58.955 34.615 0.00 0.00 0.00 3.14
255 256 7.011109 ACTGTTTTACCGTGAATATGAGCATAC 59.989 37.037 0.00 0.00 0.00 2.39
256 257 6.259167 TGTTTTACCGTGAATATGAGCATACC 59.741 38.462 0.00 0.00 0.00 2.73
257 258 5.538849 TTACCGTGAATATGAGCATACCA 57.461 39.130 0.00 0.00 0.00 3.25
258 259 3.728845 ACCGTGAATATGAGCATACCAC 58.271 45.455 11.62 11.62 32.01 4.16
259 260 3.067106 CCGTGAATATGAGCATACCACC 58.933 50.000 14.09 3.78 31.83 4.61
260 261 2.731451 CGTGAATATGAGCATACCACCG 59.269 50.000 14.09 8.95 31.83 4.94
261 262 3.552068 CGTGAATATGAGCATACCACCGA 60.552 47.826 14.09 0.00 31.83 4.69
262 263 4.569943 GTGAATATGAGCATACCACCGAT 58.430 43.478 10.99 0.00 30.52 4.18
263 264 4.997395 GTGAATATGAGCATACCACCGATT 59.003 41.667 10.99 0.00 30.52 3.34
264 265 5.470098 GTGAATATGAGCATACCACCGATTT 59.530 40.000 10.99 0.00 30.52 2.17
265 266 6.649141 GTGAATATGAGCATACCACCGATTTA 59.351 38.462 10.99 0.00 30.52 1.40
266 267 7.334421 GTGAATATGAGCATACCACCGATTTAT 59.666 37.037 10.99 0.00 30.52 1.40
267 268 7.334171 TGAATATGAGCATACCACCGATTTATG 59.666 37.037 0.00 0.00 0.00 1.90
268 269 4.681074 TGAGCATACCACCGATTTATGA 57.319 40.909 0.00 0.00 0.00 2.15
269 270 4.377021 TGAGCATACCACCGATTTATGAC 58.623 43.478 0.00 0.00 0.00 3.06
270 271 3.740115 AGCATACCACCGATTTATGACC 58.260 45.455 0.00 0.00 0.00 4.02
271 272 3.391296 AGCATACCACCGATTTATGACCT 59.609 43.478 0.00 0.00 0.00 3.85
272 273 4.134563 GCATACCACCGATTTATGACCTT 58.865 43.478 0.00 0.00 0.00 3.50
273 274 4.578928 GCATACCACCGATTTATGACCTTT 59.421 41.667 0.00 0.00 0.00 3.11
274 275 5.505654 GCATACCACCGATTTATGACCTTTG 60.506 44.000 0.00 0.00 0.00 2.77
275 276 4.028993 ACCACCGATTTATGACCTTTGT 57.971 40.909 0.00 0.00 0.00 2.83
276 277 4.403734 ACCACCGATTTATGACCTTTGTT 58.596 39.130 0.00 0.00 0.00 2.83
277 278 4.830600 ACCACCGATTTATGACCTTTGTTT 59.169 37.500 0.00 0.00 0.00 2.83
278 279 5.160641 CCACCGATTTATGACCTTTGTTTG 58.839 41.667 0.00 0.00 0.00 2.93
279 280 5.278758 CCACCGATTTATGACCTTTGTTTGT 60.279 40.000 0.00 0.00 0.00 2.83
280 281 6.072397 CCACCGATTTATGACCTTTGTTTGTA 60.072 38.462 0.00 0.00 0.00 2.41
281 282 7.364200 CACCGATTTATGACCTTTGTTTGTAA 58.636 34.615 0.00 0.00 0.00 2.41
282 283 7.537306 CACCGATTTATGACCTTTGTTTGTAAG 59.463 37.037 0.00 0.00 0.00 2.34
283 284 7.229907 ACCGATTTATGACCTTTGTTTGTAAGT 59.770 33.333 0.00 0.00 0.00 2.24
284 285 8.079809 CCGATTTATGACCTTTGTTTGTAAGTT 58.920 33.333 0.00 0.00 0.00 2.66
285 286 9.113876 CGATTTATGACCTTTGTTTGTAAGTTC 57.886 33.333 0.00 0.00 0.00 3.01
288 289 8.974060 TTATGACCTTTGTTTGTAAGTTCTCT 57.026 30.769 0.00 0.00 0.00 3.10
289 290 7.881775 ATGACCTTTGTTTGTAAGTTCTCTT 57.118 32.000 0.00 0.00 37.65 2.85
290 291 7.696992 TGACCTTTGTTTGTAAGTTCTCTTT 57.303 32.000 0.00 0.00 35.36 2.52
291 292 8.795842 TGACCTTTGTTTGTAAGTTCTCTTTA 57.204 30.769 0.00 0.00 35.36 1.85
292 293 9.233649 TGACCTTTGTTTGTAAGTTCTCTTTAA 57.766 29.630 0.00 0.00 35.36 1.52
316 317 7.973048 ATTTCTCCTAGTGTATACTGGAACA 57.027 36.000 4.49 0.00 37.58 3.18
317 318 6.770746 TTCTCCTAGTGTATACTGGAACAC 57.229 41.667 4.49 0.00 45.06 3.32
326 327 7.813852 GTGTATACTGGAACACTTCTACTTG 57.186 40.000 4.17 0.00 42.17 3.16
327 328 7.376615 GTGTATACTGGAACACTTCTACTTGT 58.623 38.462 4.17 0.00 42.17 3.16
328 329 7.541437 GTGTATACTGGAACACTTCTACTTGTC 59.459 40.741 4.17 0.00 42.17 3.18
329 330 6.919775 ATACTGGAACACTTCTACTTGTCT 57.080 37.500 0.00 0.00 0.00 3.41
396 397 1.233285 CGCATGAGATAAGGCTGGCC 61.233 60.000 3.00 3.00 0.00 5.36
397 398 0.892814 GCATGAGATAAGGCTGGCCC 60.893 60.000 8.11 0.00 36.58 5.80
398 399 0.604780 CATGAGATAAGGCTGGCCCG 60.605 60.000 8.11 0.00 39.21 6.13
400 401 0.764369 TGAGATAAGGCTGGCCCGAT 60.764 55.000 8.11 1.84 39.21 4.18
401 402 0.036858 GAGATAAGGCTGGCCCGATC 60.037 60.000 8.11 10.88 39.21 3.69
402 403 1.374758 GATAAGGCTGGCCCGATCG 60.375 63.158 8.51 8.51 39.21 3.69
403 404 2.788191 GATAAGGCTGGCCCGATCGG 62.788 65.000 27.65 27.65 39.21 4.18
425 426 1.677052 ACCTTCGGAATAGCGAGTCTC 59.323 52.381 0.00 0.00 0.00 3.36
436 437 1.661509 CGAGTCTCGCAACAGCACA 60.662 57.895 9.74 0.00 31.14 4.57
438 439 1.895280 GAGTCTCGCAACAGCACAGC 61.895 60.000 0.00 0.00 0.00 4.40
440 441 2.667536 CTCGCAACAGCACAGCCT 60.668 61.111 0.00 0.00 0.00 4.58
443 444 1.207593 CGCAACAGCACAGCCTAAC 59.792 57.895 0.00 0.00 0.00 2.34
444 445 1.506309 CGCAACAGCACAGCCTAACA 61.506 55.000 0.00 0.00 0.00 2.41
445 446 0.239347 GCAACAGCACAGCCTAACAG 59.761 55.000 0.00 0.00 0.00 3.16
446 447 1.882912 CAACAGCACAGCCTAACAGA 58.117 50.000 0.00 0.00 0.00 3.41
448 449 1.884235 ACAGCACAGCCTAACAGAAC 58.116 50.000 0.00 0.00 0.00 3.01
450 451 0.320771 AGCACAGCCTAACAGAACGG 60.321 55.000 0.00 0.00 0.00 4.44
451 452 0.320421 GCACAGCCTAACAGAACGGA 60.320 55.000 0.00 0.00 0.00 4.69
452 453 1.429463 CACAGCCTAACAGAACGGAC 58.571 55.000 0.00 0.00 0.00 4.79
453 454 0.038526 ACAGCCTAACAGAACGGACG 60.039 55.000 0.00 0.00 0.00 4.79
454 455 0.242825 CAGCCTAACAGAACGGACGA 59.757 55.000 0.00 0.00 0.00 4.20
455 456 0.963962 AGCCTAACAGAACGGACGAA 59.036 50.000 0.00 0.00 0.00 3.85
456 457 1.549170 AGCCTAACAGAACGGACGAAT 59.451 47.619 0.00 0.00 0.00 3.34
458 459 2.673043 GCCTAACAGAACGGACGAATCA 60.673 50.000 0.00 0.00 0.00 2.57
460 461 3.367025 CCTAACAGAACGGACGAATCAAC 59.633 47.826 0.00 0.00 0.00 3.18
461 462 2.519377 ACAGAACGGACGAATCAACA 57.481 45.000 0.00 0.00 0.00 3.33
462 463 3.040147 ACAGAACGGACGAATCAACAT 57.960 42.857 0.00 0.00 0.00 2.71
463 464 4.182693 ACAGAACGGACGAATCAACATA 57.817 40.909 0.00 0.00 0.00 2.29
464 465 3.924686 ACAGAACGGACGAATCAACATAC 59.075 43.478 0.00 0.00 0.00 2.39
465 466 3.306166 CAGAACGGACGAATCAACATACC 59.694 47.826 0.00 0.00 0.00 2.73
466 467 3.194968 AGAACGGACGAATCAACATACCT 59.805 43.478 0.00 0.00 0.00 3.08
467 468 4.400251 AGAACGGACGAATCAACATACCTA 59.600 41.667 0.00 0.00 0.00 3.08
468 469 4.931661 ACGGACGAATCAACATACCTAT 57.068 40.909 0.00 0.00 0.00 2.57
469 470 4.868067 ACGGACGAATCAACATACCTATC 58.132 43.478 0.00 0.00 0.00 2.08
471 472 4.680110 CGGACGAATCAACATACCTATCAC 59.320 45.833 0.00 0.00 0.00 3.06
472 473 5.597806 GGACGAATCAACATACCTATCACA 58.402 41.667 0.00 0.00 0.00 3.58
473 474 5.692204 GGACGAATCAACATACCTATCACAG 59.308 44.000 0.00 0.00 0.00 3.66
476 477 7.426410 ACGAATCAACATACCTATCACAGTAG 58.574 38.462 0.00 0.00 0.00 2.57
477 478 7.068348 ACGAATCAACATACCTATCACAGTAGT 59.932 37.037 0.00 0.00 0.00 2.73
478 479 7.921214 CGAATCAACATACCTATCACAGTAGTT 59.079 37.037 0.00 0.00 0.00 2.24
479 480 9.601217 GAATCAACATACCTATCACAGTAGTTT 57.399 33.333 0.00 0.00 0.00 2.66
480 481 9.959721 AATCAACATACCTATCACAGTAGTTTT 57.040 29.630 0.00 0.00 0.00 2.43
481 482 8.771920 TCAACATACCTATCACAGTAGTTTTG 57.228 34.615 0.00 0.00 0.00 2.44
484 485 8.362464 ACATACCTATCACAGTAGTTTTGAGA 57.638 34.615 0.00 0.00 0.00 3.27
485 486 8.470805 ACATACCTATCACAGTAGTTTTGAGAG 58.529 37.037 0.00 0.00 0.00 3.20
486 487 5.725362 ACCTATCACAGTAGTTTTGAGAGC 58.275 41.667 0.00 0.00 29.03 4.09
487 488 5.112686 CCTATCACAGTAGTTTTGAGAGCC 58.887 45.833 0.00 0.00 29.03 4.70
488 489 3.402628 TCACAGTAGTTTTGAGAGCCC 57.597 47.619 0.00 0.00 0.00 5.19
489 490 2.038557 TCACAGTAGTTTTGAGAGCCCC 59.961 50.000 0.00 0.00 0.00 5.80
490 491 2.039084 CACAGTAGTTTTGAGAGCCCCT 59.961 50.000 0.00 0.00 0.00 4.79
491 492 2.039084 ACAGTAGTTTTGAGAGCCCCTG 59.961 50.000 0.00 0.00 0.00 4.45
492 493 1.003696 AGTAGTTTTGAGAGCCCCTGC 59.996 52.381 0.00 0.00 37.95 4.85
493 494 0.328258 TAGTTTTGAGAGCCCCTGCC 59.672 55.000 0.00 0.00 38.69 4.85
494 495 1.228552 GTTTTGAGAGCCCCTGCCA 60.229 57.895 0.00 0.00 38.69 4.92
495 496 1.228552 TTTTGAGAGCCCCTGCCAC 60.229 57.895 0.00 0.00 38.69 5.01
496 497 2.713531 TTTTGAGAGCCCCTGCCACC 62.714 60.000 0.00 0.00 38.69 4.61
497 498 4.980592 TGAGAGCCCCTGCCACCA 62.981 66.667 0.00 0.00 38.69 4.17
498 499 4.106925 GAGAGCCCCTGCCACCAG 62.107 72.222 0.00 0.00 38.69 4.00
506 507 4.767255 CTGCCACCAGCCCTCGAC 62.767 72.222 0.00 0.00 42.71 4.20
516 517 3.141488 CCCTCGACCCGACCTGAG 61.141 72.222 0.00 0.00 0.00 3.35
517 518 3.827898 CCTCGACCCGACCTGAGC 61.828 72.222 0.00 0.00 0.00 4.26
518 519 3.827898 CTCGACCCGACCTGAGCC 61.828 72.222 0.00 0.00 0.00 4.70
677 689 2.970639 CGCTTCCCTCGTCTCCAA 59.029 61.111 0.00 0.00 0.00 3.53
807 819 1.063488 GCACCGCAACAACTTCGTT 59.937 52.632 0.00 0.00 0.00 3.85
891 903 2.105477 CCCCTGCATACTATTCAGCTGT 59.895 50.000 14.67 0.00 0.00 4.40
1031 1061 4.821589 GCTTCGCACCGGAGAGGG 62.822 72.222 9.46 6.22 46.96 4.30
1131 1174 2.593468 AATGGGGCGGTGTCATCTCG 62.593 60.000 0.00 0.00 0.00 4.04
1137 1180 2.509336 GGTGTCATCTCGGCACCG 60.509 66.667 1.73 1.73 42.43 4.94
1146 1189 2.363276 TCGGCACCGATACCACCT 60.363 61.111 7.89 0.00 44.01 4.00
1260 1303 6.015519 CCATTCTTGAGTTCAATTTGGGTACA 60.016 38.462 0.00 0.00 35.02 2.90
1262 1305 5.690865 TCTTGAGTTCAATTTGGGTACACT 58.309 37.500 0.00 0.00 35.02 3.55
1330 1373 1.951209 TCACAGCCTCTGGGTTATGA 58.049 50.000 0.00 0.00 36.13 2.15
1343 1386 1.490490 GGTTATGAGGGCACAGGATGA 59.510 52.381 0.00 0.00 39.69 2.92
1398 1441 1.560923 CGCAACTATGGAAGAGGACG 58.439 55.000 0.00 0.00 0.00 4.79
1404 1447 5.665459 CAACTATGGAAGAGGACGAAGAAT 58.335 41.667 0.00 0.00 0.00 2.40
1406 1449 3.550437 ATGGAAGAGGACGAAGAATGG 57.450 47.619 0.00 0.00 0.00 3.16
1438 1482 2.156504 GCTGCTAATTCATGGACGATCG 59.843 50.000 14.88 14.88 0.00 3.69
1467 1511 6.820656 AGACTATTCAAATGGACAAGCTACTG 59.179 38.462 0.00 0.00 0.00 2.74
1702 1771 9.406828 CATCTTCATGATGCAGGTATAAAAATG 57.593 33.333 0.00 0.00 44.96 2.32
1703 1772 8.523915 TCTTCATGATGCAGGTATAAAAATGT 57.476 30.769 0.00 0.00 0.00 2.71
1704 1773 8.970020 TCTTCATGATGCAGGTATAAAAATGTT 58.030 29.630 0.00 0.00 0.00 2.71
1733 1808 6.754209 GTCATCTCCTATAAGCGGTTGATATG 59.246 42.308 10.73 7.19 0.00 1.78
1747 1828 4.330074 GGTTGATATGAAGTCTTCCACGTG 59.670 45.833 9.08 9.08 0.00 4.49
1752 1833 4.813296 ATGAAGTCTTCCACGTGTTTTC 57.187 40.909 15.65 8.92 0.00 2.29
1767 1868 7.318674 CCACGTGTTTTCGTTAGTGTTATAAAC 59.681 37.037 15.65 0.00 42.27 2.01
1808 1909 8.367911 CCACTGTATATATCAGTTGGCTCTTTA 58.632 37.037 12.40 0.00 43.14 1.85
1818 1919 3.319122 AGTTGGCTCTTTAAAGTGCTTGG 59.681 43.478 30.60 11.92 43.16 3.61
1856 1965 9.216117 ACATATAGTGTTGTTTTCTAGTGTTCC 57.784 33.333 0.00 0.00 38.01 3.62
1857 1966 9.214957 CATATAGTGTTGTTTTCTAGTGTTCCA 57.785 33.333 0.00 0.00 0.00 3.53
1876 1985 3.264193 TCCATTCTGATACTTGTGTGGCT 59.736 43.478 0.00 0.00 0.00 4.75
1883 1992 3.191162 TGATACTTGTGTGGCTCAATTGC 59.809 43.478 0.00 0.00 0.00 3.56
1884 1993 1.401761 ACTTGTGTGGCTCAATTGCA 58.598 45.000 0.00 0.00 34.04 4.08
1897 2006 6.096564 TGGCTCAATTGCATGTGATGTTTATA 59.903 34.615 0.00 0.00 34.04 0.98
1997 2108 6.101150 AGCCAATGGGTTATCAGTGTTCTATA 59.899 38.462 0.00 0.00 36.17 1.31
2018 2129 9.699410 TCTATATTGTCATGATTTTGGGTTTCT 57.301 29.630 0.00 0.00 0.00 2.52
2023 2134 7.831691 TGTCATGATTTTGGGTTTCTTTAGA 57.168 32.000 0.00 0.00 0.00 2.10
2024 2135 8.243961 TGTCATGATTTTGGGTTTCTTTAGAA 57.756 30.769 0.00 0.00 0.00 2.10
2051 2164 4.810191 AAGTATGAGTGTGTCCCTTCTC 57.190 45.455 0.00 0.00 0.00 2.87
2052 2165 2.755655 AGTATGAGTGTGTCCCTTCTCG 59.244 50.000 0.00 0.00 0.00 4.04
2053 2166 0.247736 ATGAGTGTGTCCCTTCTCGC 59.752 55.000 0.00 0.00 0.00 5.03
2066 2179 3.057526 CCCTTCTCGCGGAAAAGAAAAAT 60.058 43.478 6.13 0.00 33.07 1.82
2067 2180 3.914364 CCTTCTCGCGGAAAAGAAAAATG 59.086 43.478 6.13 0.00 33.07 2.32
2074 2188 4.303282 GCGGAAAAGAAAAATGGTAGCAA 58.697 39.130 0.00 0.00 0.00 3.91
2075 2189 4.149922 GCGGAAAAGAAAAATGGTAGCAAC 59.850 41.667 0.00 0.00 0.00 4.17
2078 2192 6.074356 CGGAAAAGAAAAATGGTAGCAACTTG 60.074 38.462 0.00 0.00 0.00 3.16
2087 2201 8.642908 AAAATGGTAGCAACTTGTTTTCTAAC 57.357 30.769 0.00 0.00 34.75 2.34
2092 2206 7.499563 TGGTAGCAACTTGTTTTCTAACATACA 59.500 33.333 0.00 0.00 43.43 2.29
2153 2267 7.078228 GTGGTTTGAGTATGACTTAGCAAAAG 58.922 38.462 0.00 0.00 0.00 2.27
2155 2269 7.665559 TGGTTTGAGTATGACTTAGCAAAAGAT 59.334 33.333 5.89 0.00 0.00 2.40
2260 2377 9.807649 GAACTAAATATCATTGTTTCATGCCTT 57.192 29.630 0.00 0.00 0.00 4.35
2266 2383 4.885413 TCATTGTTTCATGCCTTTTGAGG 58.115 39.130 0.00 0.00 0.00 3.86
2307 2434 6.462073 AAAGTGTATAGTTGCAGTGTTACG 57.538 37.500 0.00 0.00 0.00 3.18
2309 2436 4.921515 AGTGTATAGTTGCAGTGTTACGTG 59.078 41.667 0.00 0.00 0.00 4.49
2310 2437 4.090930 GTGTATAGTTGCAGTGTTACGTGG 59.909 45.833 0.00 0.00 0.00 4.94
2314 2441 1.796459 GTTGCAGTGTTACGTGGTAGG 59.204 52.381 0.00 0.00 0.00 3.18
2328 2455 6.399639 ACGTGGTAGGTTGAATTTGAAAAT 57.600 33.333 0.00 0.00 0.00 1.82
2330 2457 7.590279 ACGTGGTAGGTTGAATTTGAAAATAG 58.410 34.615 0.00 0.00 0.00 1.73
2333 2460 7.755373 GTGGTAGGTTGAATTTGAAAATAGCTC 59.245 37.037 0.00 0.00 0.00 4.09
2334 2461 7.450014 TGGTAGGTTGAATTTGAAAATAGCTCA 59.550 33.333 0.00 0.00 0.00 4.26
2335 2462 8.470002 GGTAGGTTGAATTTGAAAATAGCTCAT 58.530 33.333 0.00 0.00 0.00 2.90
2336 2463 9.294030 GTAGGTTGAATTTGAAAATAGCTCATG 57.706 33.333 0.00 0.00 0.00 3.07
2337 2464 8.125978 AGGTTGAATTTGAAAATAGCTCATGA 57.874 30.769 0.00 0.00 0.00 3.07
2339 2466 9.374838 GGTTGAATTTGAAAATAGCTCATGAAT 57.625 29.630 0.00 0.00 0.00 2.57
2356 2483 7.975616 GCTCATGAATAAAATAGCTTGAACCAA 59.024 33.333 0.00 0.00 0.00 3.67
2361 2488 9.515226 TGAATAAAATAGCTTGAACCAACTAGT 57.485 29.630 0.00 0.00 0.00 2.57
2362 2489 9.989869 GAATAAAATAGCTTGAACCAACTAGTC 57.010 33.333 0.00 0.00 0.00 2.59
2366 2493 4.623932 AGCTTGAACCAACTAGTCATGA 57.376 40.909 0.00 0.00 0.00 3.07
2367 2494 4.973168 AGCTTGAACCAACTAGTCATGAA 58.027 39.130 0.00 0.00 0.00 2.57
2369 2496 6.006449 AGCTTGAACCAACTAGTCATGAAAT 58.994 36.000 0.00 0.00 0.00 2.17
2370 2497 6.491403 AGCTTGAACCAACTAGTCATGAAATT 59.509 34.615 0.00 0.00 0.00 1.82
2371 2498 6.583806 GCTTGAACCAACTAGTCATGAAATTG 59.416 38.462 0.00 0.00 0.00 2.32
2372 2499 6.573664 TGAACCAACTAGTCATGAAATTGG 57.426 37.500 19.50 19.50 41.92 3.16
2374 2501 7.227873 TGAACCAACTAGTCATGAAATTGGTA 58.772 34.615 23.82 13.37 46.98 3.25
2389 2518 3.552132 TTGGTAGCTCAATCGGCATAA 57.448 42.857 0.00 0.00 0.00 1.90
2427 2556 7.498900 AGCTGATTATATTTTTCCGTCATCACA 59.501 33.333 0.00 0.00 0.00 3.58
2439 2568 8.812147 TTTCCGTCATCACATACTGTTATATC 57.188 34.615 0.00 0.00 0.00 1.63
2441 2570 6.206048 TCCGTCATCACATACTGTTATATCGT 59.794 38.462 0.00 0.00 0.00 3.73
2446 2575 9.244799 TCATCACATACTGTTATATCGTTTGAC 57.755 33.333 0.00 0.00 0.00 3.18
2448 2577 7.548967 TCACATACTGTTATATCGTTTGACCA 58.451 34.615 0.00 0.00 0.00 4.02
2455 2584 9.221933 ACTGTTATATCGTTTGACCATGTTAAA 57.778 29.630 0.00 0.00 0.00 1.52
2463 2592 7.812648 TCGTTTGACCATGTTAAAAATCTAGG 58.187 34.615 0.00 0.00 0.00 3.02
2465 2594 8.079809 CGTTTGACCATGTTAAAAATCTAGGTT 58.920 33.333 0.00 0.00 0.00 3.50
2466 2595 9.758651 GTTTGACCATGTTAAAAATCTAGGTTT 57.241 29.630 0.00 0.00 0.00 3.27
2467 2596 9.757227 TTTGACCATGTTAAAAATCTAGGTTTG 57.243 29.630 0.68 0.00 0.00 2.93
2487 2617 8.621286 AGGTTTGTACTTAGATTGACAACTTTG 58.379 33.333 0.00 0.00 31.78 2.77
2542 2672 5.514500 AACTTTTATTAGGAGTCCTGGCA 57.486 39.130 22.69 5.97 34.61 4.92
2543 2673 4.844884 ACTTTTATTAGGAGTCCTGGCAC 58.155 43.478 22.69 0.00 34.61 5.01
2546 2676 0.253160 ATTAGGAGTCCTGGCACCCA 60.253 55.000 22.69 0.00 34.61 4.51
2567 2697 3.254166 CAGCTACAAGTTGCAAGTCCATT 59.746 43.478 7.36 0.00 33.84 3.16
2570 2700 4.499696 GCTACAAGTTGCAAGTCCATTTGT 60.500 41.667 7.36 10.21 31.87 2.83
2572 2702 5.789643 ACAAGTTGCAAGTCCATTTGTAT 57.210 34.783 7.36 0.00 0.00 2.29
2575 2705 5.633830 AGTTGCAAGTCCATTTGTATGAG 57.366 39.130 0.00 0.00 33.37 2.90
2582 2712 7.025963 GCAAGTCCATTTGTATGAGAGAAAAG 58.974 38.462 0.00 0.00 33.37 2.27
2586 2717 8.772250 AGTCCATTTGTATGAGAGAAAAGGATA 58.228 33.333 0.00 0.00 39.53 2.59
2591 2722 7.792374 TTGTATGAGAGAAAAGGATATGCAC 57.208 36.000 0.00 0.00 0.00 4.57
2593 2724 7.212976 TGTATGAGAGAAAAGGATATGCACTC 58.787 38.462 0.00 0.50 0.00 3.51
2600 2731 6.349300 AGAAAAGGATATGCACTCGTACAAT 58.651 36.000 0.00 0.00 0.00 2.71
2607 2739 7.931407 AGGATATGCACTCGTACAATCAAATTA 59.069 33.333 0.00 0.00 0.00 1.40
2608 2740 8.556194 GGATATGCACTCGTACAATCAAATTAA 58.444 33.333 0.00 0.00 0.00 1.40
2638 2770 5.716228 TGGCTTCATGTCATTATTTGAACCT 59.284 36.000 0.00 0.00 35.70 3.50
2641 2773 6.971184 GCTTCATGTCATTATTTGAACCTGAG 59.029 38.462 0.00 0.00 35.70 3.35
2642 2774 7.395190 TTCATGTCATTATTTGAACCTGAGG 57.605 36.000 0.00 0.00 35.70 3.86
2661 2793 4.254492 GAGGGGTCACTATCACTTTGTTC 58.746 47.826 0.00 0.00 0.00 3.18
2662 2794 3.910627 AGGGGTCACTATCACTTTGTTCT 59.089 43.478 0.00 0.00 0.00 3.01
2667 2799 5.940470 GGTCACTATCACTTTGTTCTTGGAT 59.060 40.000 0.00 0.00 0.00 3.41
2668 2800 6.092807 GGTCACTATCACTTTGTTCTTGGATC 59.907 42.308 0.00 0.00 0.00 3.36
2671 2803 7.388776 TCACTATCACTTTGTTCTTGGATCTTG 59.611 37.037 0.00 0.00 0.00 3.02
2674 2806 9.219603 CTATCACTTTGTTCTTGGATCTTGTTA 57.780 33.333 0.00 0.00 0.00 2.41
2675 2807 7.496529 TCACTTTGTTCTTGGATCTTGTTAG 57.503 36.000 0.00 0.00 0.00 2.34
2676 2808 7.054124 TCACTTTGTTCTTGGATCTTGTTAGT 58.946 34.615 0.00 0.00 0.00 2.24
2677 2809 7.226720 TCACTTTGTTCTTGGATCTTGTTAGTC 59.773 37.037 0.00 0.00 0.00 2.59
2678 2810 7.227512 CACTTTGTTCTTGGATCTTGTTAGTCT 59.772 37.037 0.00 0.00 0.00 3.24
2680 2812 7.496529 TTGTTCTTGGATCTTGTTAGTCTTG 57.503 36.000 0.00 0.00 0.00 3.02
2681 2813 6.591935 TGTTCTTGGATCTTGTTAGTCTTGT 58.408 36.000 0.00 0.00 0.00 3.16
2682 2814 7.054124 TGTTCTTGGATCTTGTTAGTCTTGTT 58.946 34.615 0.00 0.00 0.00 2.83
2683 2815 7.556275 TGTTCTTGGATCTTGTTAGTCTTGTTT 59.444 33.333 0.00 0.00 0.00 2.83
2684 2816 8.406297 GTTCTTGGATCTTGTTAGTCTTGTTTT 58.594 33.333 0.00 0.00 0.00 2.43
2685 2817 9.621629 TTCTTGGATCTTGTTAGTCTTGTTTTA 57.378 29.630 0.00 0.00 0.00 1.52
2686 2818 9.793259 TCTTGGATCTTGTTAGTCTTGTTTTAT 57.207 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
2 3 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
3 4 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
4 5 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
5 6 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
6 7 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
7 8 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
8 9 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
9 10 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
30 31 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
31 32 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
44 45 4.171005 TGAGATTTACGAAGCAACCGTAG 58.829 43.478 0.00 0.00 42.42 3.51
45 46 4.177165 TGAGATTTACGAAGCAACCGTA 57.823 40.909 0.00 0.00 40.95 4.02
46 47 3.034721 TGAGATTTACGAAGCAACCGT 57.965 42.857 0.00 0.00 43.26 4.83
47 48 3.678072 TCTTGAGATTTACGAAGCAACCG 59.322 43.478 0.00 0.00 0.00 4.44
48 49 5.351465 TCATCTTGAGATTTACGAAGCAACC 59.649 40.000 0.00 0.00 31.21 3.77
49 50 6.408858 TCATCTTGAGATTTACGAAGCAAC 57.591 37.500 0.00 0.00 31.21 4.17
50 51 8.768019 CATATCATCTTGAGATTTACGAAGCAA 58.232 33.333 0.00 0.00 31.21 3.91
51 52 7.095481 GCATATCATCTTGAGATTTACGAAGCA 60.095 37.037 0.00 0.00 31.21 3.91
52 53 7.232994 GCATATCATCTTGAGATTTACGAAGC 58.767 38.462 0.00 0.00 31.21 3.86
53 54 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
54 55 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
55 56 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
56 57 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
57 58 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
58 59 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
59 60 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
60 61 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
61 62 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
62 63 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
63 64 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
64 65 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
65 66 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
66 67 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
67 68 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
68 69 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
69 70 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
70 71 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
71 72 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
72 73 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
73 74 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
74 75 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
75 76 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
76 77 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
77 78 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
78 79 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
79 80 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
80 81 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
81 82 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
82 83 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
83 84 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
84 85 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
85 86 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
86 87 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
87 88 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
88 89 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
89 90 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
90 91 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
91 92 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
92 93 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
93 94 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
94 95 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
95 96 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
96 97 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
97 98 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
98 99 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
99 100 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
100 101 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
101 102 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
102 103 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
103 104 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
104 105 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
105 106 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
106 107 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
107 108 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
108 109 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
109 110 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
112 113 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
113 114 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
114 115 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
115 116 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
116 117 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
117 118 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
118 119 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
119 120 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
120 121 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
121 122 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
122 123 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
123 124 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
124 125 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
125 126 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
126 127 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
127 128 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
128 129 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
129 130 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
130 131 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
131 132 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
132 133 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
133 134 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
134 135 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
135 136 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
136 137 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
137 138 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
138 139 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
139 140 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
140 141 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
141 142 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
142 143 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
143 144 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
144 145 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
145 146 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
146 147 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
150 151 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
151 152 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
152 153 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
153 154 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
154 155 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
155 156 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
156 157 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
157 158 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
158 159 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
159 160 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
160 161 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
161 162 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
162 163 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
163 164 2.670414 GAGCATCAGTACAGACACAAGC 59.330 50.000 0.00 0.00 33.17 4.01
164 165 3.917988 TGAGCATCAGTACAGACACAAG 58.082 45.455 0.00 0.00 42.56 3.16
189 190 5.104982 TCAGCTTCTCAACACCCAAATTTTT 60.105 36.000 0.00 0.00 0.00 1.94
190 191 4.405358 TCAGCTTCTCAACACCCAAATTTT 59.595 37.500 0.00 0.00 0.00 1.82
191 192 3.960102 TCAGCTTCTCAACACCCAAATTT 59.040 39.130 0.00 0.00 0.00 1.82
192 193 3.319122 GTCAGCTTCTCAACACCCAAATT 59.681 43.478 0.00 0.00 0.00 1.82
193 194 2.887152 GTCAGCTTCTCAACACCCAAAT 59.113 45.455 0.00 0.00 0.00 2.32
194 195 2.297701 GTCAGCTTCTCAACACCCAAA 58.702 47.619 0.00 0.00 0.00 3.28
195 196 1.211703 TGTCAGCTTCTCAACACCCAA 59.788 47.619 0.00 0.00 0.00 4.12
196 197 0.836606 TGTCAGCTTCTCAACACCCA 59.163 50.000 0.00 0.00 0.00 4.51
197 198 1.202698 AGTGTCAGCTTCTCAACACCC 60.203 52.381 8.60 0.00 42.28 4.61
198 199 2.246719 AGTGTCAGCTTCTCAACACC 57.753 50.000 8.60 0.00 42.28 4.16
199 200 2.939103 ACAAGTGTCAGCTTCTCAACAC 59.061 45.455 0.00 0.00 41.77 3.32
200 201 3.266510 ACAAGTGTCAGCTTCTCAACA 57.733 42.857 0.00 0.00 0.00 3.33
201 202 4.622701 AAACAAGTGTCAGCTTCTCAAC 57.377 40.909 0.00 0.00 0.00 3.18
202 203 5.643379 AAAAACAAGTGTCAGCTTCTCAA 57.357 34.783 0.00 0.00 0.00 3.02
225 226 8.231837 GCTCATATTCACGGTAAAACAGTAAAA 58.768 33.333 0.00 0.00 0.00 1.52
226 227 7.388224 TGCTCATATTCACGGTAAAACAGTAAA 59.612 33.333 0.00 0.00 0.00 2.01
227 228 6.874664 TGCTCATATTCACGGTAAAACAGTAA 59.125 34.615 0.00 0.00 0.00 2.24
228 229 6.399743 TGCTCATATTCACGGTAAAACAGTA 58.600 36.000 0.00 0.00 0.00 2.74
229 230 5.242434 TGCTCATATTCACGGTAAAACAGT 58.758 37.500 0.00 0.00 0.00 3.55
230 231 5.794687 TGCTCATATTCACGGTAAAACAG 57.205 39.130 0.00 0.00 0.00 3.16
231 232 6.259167 GGTATGCTCATATTCACGGTAAAACA 59.741 38.462 0.00 0.00 0.00 2.83
232 233 6.259167 TGGTATGCTCATATTCACGGTAAAAC 59.741 38.462 0.00 0.00 0.00 2.43
233 234 6.259167 GTGGTATGCTCATATTCACGGTAAAA 59.741 38.462 9.06 0.00 0.00 1.52
234 235 5.756347 GTGGTATGCTCATATTCACGGTAAA 59.244 40.000 9.06 0.00 0.00 2.01
235 236 5.294356 GTGGTATGCTCATATTCACGGTAA 58.706 41.667 9.06 0.00 0.00 2.85
236 237 4.262292 GGTGGTATGCTCATATTCACGGTA 60.262 45.833 14.20 0.00 34.33 4.02
237 238 3.494398 GGTGGTATGCTCATATTCACGGT 60.494 47.826 14.20 0.00 34.33 4.83
238 239 3.067106 GGTGGTATGCTCATATTCACGG 58.933 50.000 14.20 0.00 34.33 4.94
239 240 2.731451 CGGTGGTATGCTCATATTCACG 59.269 50.000 14.20 0.00 34.33 4.35
240 241 3.990092 TCGGTGGTATGCTCATATTCAC 58.010 45.455 13.15 13.15 33.57 3.18
241 242 4.890158 ATCGGTGGTATGCTCATATTCA 57.110 40.909 0.00 0.00 0.00 2.57
242 243 7.549134 TCATAAATCGGTGGTATGCTCATATTC 59.451 37.037 0.00 0.00 0.00 1.75
243 244 7.334421 GTCATAAATCGGTGGTATGCTCATATT 59.666 37.037 0.00 0.00 0.00 1.28
244 245 6.818644 GTCATAAATCGGTGGTATGCTCATAT 59.181 38.462 0.00 0.00 0.00 1.78
245 246 6.163476 GTCATAAATCGGTGGTATGCTCATA 58.837 40.000 0.00 0.00 0.00 2.15
246 247 4.997395 GTCATAAATCGGTGGTATGCTCAT 59.003 41.667 0.00 0.00 0.00 2.90
247 248 4.377021 GTCATAAATCGGTGGTATGCTCA 58.623 43.478 0.00 0.00 0.00 4.26
248 249 3.746492 GGTCATAAATCGGTGGTATGCTC 59.254 47.826 0.00 0.00 0.00 4.26
249 250 3.391296 AGGTCATAAATCGGTGGTATGCT 59.609 43.478 0.00 0.00 0.00 3.79
250 251 3.740115 AGGTCATAAATCGGTGGTATGC 58.260 45.455 0.00 0.00 0.00 3.14
251 252 5.588648 ACAAAGGTCATAAATCGGTGGTATG 59.411 40.000 0.00 0.00 0.00 2.39
252 253 5.751586 ACAAAGGTCATAAATCGGTGGTAT 58.248 37.500 0.00 0.00 0.00 2.73
253 254 5.168647 ACAAAGGTCATAAATCGGTGGTA 57.831 39.130 0.00 0.00 0.00 3.25
254 255 4.028993 ACAAAGGTCATAAATCGGTGGT 57.971 40.909 0.00 0.00 0.00 4.16
255 256 5.160641 CAAACAAAGGTCATAAATCGGTGG 58.839 41.667 0.00 0.00 0.00 4.61
256 257 5.768317 ACAAACAAAGGTCATAAATCGGTG 58.232 37.500 0.00 0.00 0.00 4.94
257 258 7.229907 ACTTACAAACAAAGGTCATAAATCGGT 59.770 33.333 0.00 0.00 0.00 4.69
258 259 7.590279 ACTTACAAACAAAGGTCATAAATCGG 58.410 34.615 0.00 0.00 0.00 4.18
259 260 9.113876 GAACTTACAAACAAAGGTCATAAATCG 57.886 33.333 0.00 0.00 39.89 3.34
262 263 9.403583 AGAGAACTTACAAACAAAGGTCATAAA 57.596 29.630 3.92 0.00 42.09 1.40
263 264 8.974060 AGAGAACTTACAAACAAAGGTCATAA 57.026 30.769 3.92 0.00 42.09 1.90
264 265 8.974060 AAGAGAACTTACAAACAAAGGTCATA 57.026 30.769 3.92 0.00 42.09 2.15
265 266 7.881775 AAGAGAACTTACAAACAAAGGTCAT 57.118 32.000 3.92 0.00 42.09 3.06
266 267 7.696992 AAAGAGAACTTACAAACAAAGGTCA 57.303 32.000 3.92 0.00 42.09 4.02
290 291 9.483489 TGTTCCAGTATACACTAGGAGAAATTA 57.517 33.333 5.50 0.00 35.08 1.40
291 292 8.258708 GTGTTCCAGTATACACTAGGAGAAATT 58.741 37.037 5.50 0.00 41.05 1.82
292 293 7.783042 GTGTTCCAGTATACACTAGGAGAAAT 58.217 38.462 5.50 0.00 41.05 2.17
293 294 7.166691 GTGTTCCAGTATACACTAGGAGAAA 57.833 40.000 5.50 0.00 41.05 2.52
294 295 6.770746 GTGTTCCAGTATACACTAGGAGAA 57.229 41.667 5.50 0.00 41.05 2.87
302 303 7.376615 ACAAGTAGAAGTGTTCCAGTATACAC 58.623 38.462 5.50 0.00 43.81 2.90
303 304 7.450634 AGACAAGTAGAAGTGTTCCAGTATACA 59.549 37.037 5.50 0.00 0.00 2.29
304 305 7.828712 AGACAAGTAGAAGTGTTCCAGTATAC 58.171 38.462 0.00 0.00 0.00 1.47
305 306 7.122353 GGAGACAAGTAGAAGTGTTCCAGTATA 59.878 40.741 0.00 0.00 31.13 1.47
306 307 6.071278 GGAGACAAGTAGAAGTGTTCCAGTAT 60.071 42.308 0.00 0.00 31.13 2.12
307 308 5.243283 GGAGACAAGTAGAAGTGTTCCAGTA 59.757 44.000 0.00 0.00 31.13 2.74
308 309 4.039366 GGAGACAAGTAGAAGTGTTCCAGT 59.961 45.833 0.00 0.00 31.13 4.00
309 310 4.282195 AGGAGACAAGTAGAAGTGTTCCAG 59.718 45.833 0.00 0.00 32.20 3.86
310 311 4.039245 CAGGAGACAAGTAGAAGTGTTCCA 59.961 45.833 0.00 0.00 32.20 3.53
311 312 4.281182 TCAGGAGACAAGTAGAAGTGTTCC 59.719 45.833 0.00 0.00 0.00 3.62
312 313 5.455056 TCAGGAGACAAGTAGAAGTGTTC 57.545 43.478 0.00 0.00 0.00 3.18
313 314 5.046950 GGATCAGGAGACAAGTAGAAGTGTT 60.047 44.000 0.00 0.00 0.00 3.32
314 315 4.464597 GGATCAGGAGACAAGTAGAAGTGT 59.535 45.833 0.00 0.00 0.00 3.55
315 316 4.709397 AGGATCAGGAGACAAGTAGAAGTG 59.291 45.833 0.00 0.00 0.00 3.16
316 317 4.941713 AGGATCAGGAGACAAGTAGAAGT 58.058 43.478 0.00 0.00 0.00 3.01
317 318 7.505585 AGAATAGGATCAGGAGACAAGTAGAAG 59.494 40.741 0.00 0.00 0.00 2.85
318 319 7.358263 AGAATAGGATCAGGAGACAAGTAGAA 58.642 38.462 0.00 0.00 0.00 2.10
319 320 6.916909 AGAATAGGATCAGGAGACAAGTAGA 58.083 40.000 0.00 0.00 0.00 2.59
320 321 7.595819 AAGAATAGGATCAGGAGACAAGTAG 57.404 40.000 0.00 0.00 0.00 2.57
321 322 7.228906 CGTAAGAATAGGATCAGGAGACAAGTA 59.771 40.741 0.00 0.00 43.02 2.24
322 323 6.039941 CGTAAGAATAGGATCAGGAGACAAGT 59.960 42.308 0.00 0.00 43.02 3.16
323 324 6.039941 ACGTAAGAATAGGATCAGGAGACAAG 59.960 42.308 0.00 0.00 43.62 3.16
324 325 5.892119 ACGTAAGAATAGGATCAGGAGACAA 59.108 40.000 0.00 0.00 43.62 3.18
325 326 5.299531 CACGTAAGAATAGGATCAGGAGACA 59.700 44.000 0.00 0.00 43.62 3.41
326 327 5.531659 TCACGTAAGAATAGGATCAGGAGAC 59.468 44.000 0.00 0.00 43.62 3.36
327 328 5.691896 TCACGTAAGAATAGGATCAGGAGA 58.308 41.667 0.00 0.00 43.62 3.71
328 329 5.533154 ACTCACGTAAGAATAGGATCAGGAG 59.467 44.000 0.00 0.00 43.62 3.69
329 330 5.299531 CACTCACGTAAGAATAGGATCAGGA 59.700 44.000 0.00 0.00 43.62 3.86
404 405 5.904828 CGAGACTCGCTATTCCGAAGGTG 62.905 56.522 12.67 0.00 40.83 4.00
405 406 3.888417 CGAGACTCGCTATTCCGAAGGT 61.888 54.545 12.67 0.00 40.83 3.50
406 407 1.334239 CGAGACTCGCTATTCCGAAGG 60.334 57.143 12.67 0.00 41.27 3.46
407 408 2.025544 CGAGACTCGCTATTCCGAAG 57.974 55.000 12.67 0.00 36.72 3.79
425 426 1.207593 GTTAGGCTGTGCTGTTGCG 59.792 57.895 0.00 0.00 43.34 4.85
433 434 1.429463 GTCCGTTCTGTTAGGCTGTG 58.571 55.000 0.00 0.00 0.00 3.66
436 437 0.963962 TTCGTCCGTTCTGTTAGGCT 59.036 50.000 0.00 0.00 0.00 4.58
438 439 3.226346 TGATTCGTCCGTTCTGTTAGG 57.774 47.619 0.00 0.00 0.00 2.69
440 441 3.979948 TGTTGATTCGTCCGTTCTGTTA 58.020 40.909 0.00 0.00 0.00 2.41
443 444 3.306166 GGTATGTTGATTCGTCCGTTCTG 59.694 47.826 0.00 0.00 0.00 3.02
444 445 3.194968 AGGTATGTTGATTCGTCCGTTCT 59.805 43.478 0.00 0.00 0.00 3.01
445 446 3.518590 AGGTATGTTGATTCGTCCGTTC 58.481 45.455 0.00 0.00 0.00 3.95
446 447 3.604875 AGGTATGTTGATTCGTCCGTT 57.395 42.857 0.00 0.00 0.00 4.44
448 449 4.680110 GTGATAGGTATGTTGATTCGTCCG 59.320 45.833 0.00 0.00 0.00 4.79
450 451 6.273825 ACTGTGATAGGTATGTTGATTCGTC 58.726 40.000 0.00 0.00 0.00 4.20
451 452 6.222038 ACTGTGATAGGTATGTTGATTCGT 57.778 37.500 0.00 0.00 0.00 3.85
452 453 7.426410 ACTACTGTGATAGGTATGTTGATTCG 58.574 38.462 0.00 0.00 0.00 3.34
453 454 9.601217 AAACTACTGTGATAGGTATGTTGATTC 57.399 33.333 0.00 0.00 0.00 2.52
454 455 9.959721 AAAACTACTGTGATAGGTATGTTGATT 57.040 29.630 0.00 0.00 0.00 2.57
455 456 9.383519 CAAAACTACTGTGATAGGTATGTTGAT 57.616 33.333 0.00 0.00 0.00 2.57
456 457 8.590204 TCAAAACTACTGTGATAGGTATGTTGA 58.410 33.333 0.00 0.00 0.00 3.18
458 459 8.812972 TCTCAAAACTACTGTGATAGGTATGTT 58.187 33.333 0.00 0.00 0.00 2.71
460 461 7.436673 GCTCTCAAAACTACTGTGATAGGTATG 59.563 40.741 0.00 0.00 0.00 2.39
461 462 7.418025 GGCTCTCAAAACTACTGTGATAGGTAT 60.418 40.741 0.00 0.00 0.00 2.73
462 463 6.127423 GGCTCTCAAAACTACTGTGATAGGTA 60.127 42.308 0.00 0.00 0.00 3.08
463 464 5.337652 GGCTCTCAAAACTACTGTGATAGGT 60.338 44.000 0.00 0.00 0.00 3.08
464 465 5.112686 GGCTCTCAAAACTACTGTGATAGG 58.887 45.833 0.00 0.00 0.00 2.57
465 466 5.112686 GGGCTCTCAAAACTACTGTGATAG 58.887 45.833 0.00 0.00 0.00 2.08
466 467 4.081087 GGGGCTCTCAAAACTACTGTGATA 60.081 45.833 0.00 0.00 0.00 2.15
467 468 3.307762 GGGGCTCTCAAAACTACTGTGAT 60.308 47.826 0.00 0.00 0.00 3.06
468 469 2.038557 GGGGCTCTCAAAACTACTGTGA 59.961 50.000 0.00 0.00 0.00 3.58
469 470 2.039084 AGGGGCTCTCAAAACTACTGTG 59.961 50.000 0.00 0.00 0.00 3.66
471 472 2.704572 CAGGGGCTCTCAAAACTACTG 58.295 52.381 0.00 0.00 0.00 2.74
472 473 1.003696 GCAGGGGCTCTCAAAACTACT 59.996 52.381 0.00 0.00 36.96 2.57
473 474 1.454201 GCAGGGGCTCTCAAAACTAC 58.546 55.000 0.00 0.00 36.96 2.73
476 477 1.228552 TGGCAGGGGCTCTCAAAAC 60.229 57.895 0.00 0.00 40.87 2.43
477 478 1.228552 GTGGCAGGGGCTCTCAAAA 60.229 57.895 0.00 0.00 40.87 2.44
478 479 2.436109 GTGGCAGGGGCTCTCAAA 59.564 61.111 0.00 0.00 40.87 2.69
479 480 3.650950 GGTGGCAGGGGCTCTCAA 61.651 66.667 0.00 0.00 40.87 3.02
480 481 4.980592 TGGTGGCAGGGGCTCTCA 62.981 66.667 0.00 0.00 40.87 3.27
481 482 4.106925 CTGGTGGCAGGGGCTCTC 62.107 72.222 0.00 0.00 40.87 3.20
489 490 4.767255 GTCGAGGGCTGGTGGCAG 62.767 72.222 0.00 0.00 44.01 4.85
499 500 3.141488 CTCAGGTCGGGTCGAGGG 61.141 72.222 0.00 0.00 36.23 4.30
563 569 3.866651 CCCTCCTCACTCATGTGTTTAG 58.133 50.000 0.00 0.00 44.14 1.85
564 570 2.027192 GCCCTCCTCACTCATGTGTTTA 60.027 50.000 0.00 0.00 44.14 2.01
565 571 1.271597 GCCCTCCTCACTCATGTGTTT 60.272 52.381 0.00 0.00 44.14 2.83
566 572 0.326264 GCCCTCCTCACTCATGTGTT 59.674 55.000 0.00 0.00 44.14 3.32
567 573 1.892819 CGCCCTCCTCACTCATGTGT 61.893 60.000 0.00 0.00 44.14 3.72
568 574 1.153489 CGCCCTCCTCACTCATGTG 60.153 63.158 0.00 0.00 45.07 3.21
1020 1047 1.452108 GAAATGGCCCTCTCCGGTG 60.452 63.158 0.00 0.00 0.00 4.94
1031 1061 1.376812 AAGACGACCCGGAAATGGC 60.377 57.895 0.73 0.00 0.00 4.40
1131 1174 1.024579 CAACAGGTGGTATCGGTGCC 61.025 60.000 0.00 0.00 0.00 5.01
1137 1180 7.491696 GTCACTATAGAAACAACAGGTGGTATC 59.508 40.741 6.78 0.00 0.00 2.24
1140 1183 5.548406 GTCACTATAGAAACAACAGGTGGT 58.452 41.667 6.78 0.00 0.00 4.16
1146 1189 7.118680 GGAATTTCCGTCACTATAGAAACAACA 59.881 37.037 6.78 0.00 31.51 3.33
1260 1303 1.528542 TATCGCGGCTAGGCTCAGT 60.529 57.895 15.11 0.31 0.00 3.41
1262 1305 1.796190 CTGTATCGCGGCTAGGCTCA 61.796 60.000 15.11 0.00 0.00 4.26
1330 1373 3.065787 GCCCATCATCCTGTGCCCT 62.066 63.158 0.00 0.00 0.00 5.19
1343 1386 1.216427 GGAAGAGGAATCCAAGCCCAT 59.784 52.381 0.61 0.00 36.92 4.00
1398 1441 1.002033 GCATCATCACCGCCATTCTTC 60.002 52.381 0.00 0.00 0.00 2.87
1404 1447 1.970352 TAGCAGCATCATCACCGCCA 61.970 55.000 0.00 0.00 0.00 5.69
1406 1449 1.233019 ATTAGCAGCATCATCACCGC 58.767 50.000 0.00 0.00 0.00 5.68
1438 1482 5.574443 GCTTGTCCATTTGAATAGTCTTTGC 59.426 40.000 0.00 0.00 0.00 3.68
1467 1511 1.971357 TCCTCCTCTGTGTTCAAGGAC 59.029 52.381 0.00 0.00 35.38 3.85
1659 1728 4.620589 AGATGTGCTATTATCTGCTGCT 57.379 40.909 0.00 0.00 32.65 4.24
1702 1771 6.514063 ACCGCTTATAGGAGATGACTTAAAC 58.486 40.000 0.00 0.00 0.00 2.01
1703 1772 6.726490 ACCGCTTATAGGAGATGACTTAAA 57.274 37.500 0.00 0.00 0.00 1.52
1704 1773 6.322969 TCAACCGCTTATAGGAGATGACTTAA 59.677 38.462 0.00 0.00 0.00 1.85
1713 1782 6.692486 ACTTCATATCAACCGCTTATAGGAG 58.308 40.000 0.00 0.00 0.00 3.69
1722 1797 3.309954 GTGGAAGACTTCATATCAACCGC 59.690 47.826 16.85 0.74 0.00 5.68
1723 1798 3.551890 CGTGGAAGACTTCATATCAACCG 59.448 47.826 16.85 3.40 0.00 4.44
1733 1808 2.606272 ACGAAAACACGTGGAAGACTTC 59.394 45.455 21.57 6.66 44.84 3.01
1779 1880 7.509318 AGAGCCAACTGATATATACAGTGGTAA 59.491 37.037 14.58 0.00 46.01 2.85
1783 1884 9.764363 TTAAAGAGCCAACTGATATATACAGTG 57.236 33.333 14.58 10.44 46.01 3.66
1795 1896 4.293415 CAAGCACTTTAAAGAGCCAACTG 58.707 43.478 27.28 17.89 42.55 3.16
1808 1909 5.105392 TGTTTGAGAATTCACCAAGCACTTT 60.105 36.000 18.78 0.00 31.71 2.66
1811 1912 4.305989 TGTTTGAGAATTCACCAAGCAC 57.694 40.909 18.78 13.20 31.71 4.40
1855 1964 3.614092 AGCCACACAAGTATCAGAATGG 58.386 45.455 0.00 0.00 36.16 3.16
1856 1965 4.256110 TGAGCCACACAAGTATCAGAATG 58.744 43.478 0.00 0.00 37.54 2.67
1857 1966 4.558226 TGAGCCACACAAGTATCAGAAT 57.442 40.909 0.00 0.00 0.00 2.40
1921 2030 9.790389 CGAACATAGAGAAAACTAGTTATGACT 57.210 33.333 16.88 12.86 39.97 3.41
1922 2031 9.570488 ACGAACATAGAGAAAACTAGTTATGAC 57.430 33.333 16.88 10.79 0.00 3.06
1928 2037 9.583765 GGAATAACGAACATAGAGAAAACTAGT 57.416 33.333 0.00 0.00 0.00 2.57
1936 2045 9.745880 GAACTAATGGAATAACGAACATAGAGA 57.254 33.333 0.00 0.00 0.00 3.10
1939 2048 8.276325 GCAGAACTAATGGAATAACGAACATAG 58.724 37.037 0.00 0.00 0.00 2.23
1946 2057 5.584649 TGGAAGCAGAACTAATGGAATAACG 59.415 40.000 0.00 0.00 0.00 3.18
1997 2108 8.869109 TCTAAAGAAACCCAAAATCATGACAAT 58.131 29.630 0.00 0.00 0.00 2.71
2027 2138 5.941788 AGAAGGGACACACTCATACTTTTT 58.058 37.500 0.00 0.00 0.00 1.94
2037 2148 2.651361 CGCGAGAAGGGACACACT 59.349 61.111 0.00 0.00 34.27 3.55
2051 2164 2.914838 GCTACCATTTTTCTTTTCCGCG 59.085 45.455 0.00 0.00 0.00 6.46
2052 2165 3.908213 TGCTACCATTTTTCTTTTCCGC 58.092 40.909 0.00 0.00 0.00 5.54
2053 2166 5.528870 AGTTGCTACCATTTTTCTTTTCCG 58.471 37.500 0.00 0.00 0.00 4.30
2122 2236 9.712305 GCTAAGTCATACTCAAACCACATATAT 57.288 33.333 0.00 0.00 0.00 0.86
2123 2237 8.700973 TGCTAAGTCATACTCAAACCACATATA 58.299 33.333 0.00 0.00 0.00 0.86
2124 2238 7.564793 TGCTAAGTCATACTCAAACCACATAT 58.435 34.615 0.00 0.00 0.00 1.78
2202 2319 9.941325 TCATGCAAACCATTTAACAATATTCTT 57.059 25.926 0.00 0.00 29.71 2.52
2211 2328 9.971744 GTTCAATTATCATGCAAACCATTTAAC 57.028 29.630 0.00 0.00 29.71 2.01
2248 2365 2.364970 CACCCTCAAAAGGCATGAAACA 59.635 45.455 0.00 0.00 41.85 2.83
2285 2402 5.404366 CACGTAACACTGCAACTATACACTT 59.596 40.000 0.00 0.00 0.00 3.16
2290 2417 4.524316 ACCACGTAACACTGCAACTATA 57.476 40.909 0.00 0.00 0.00 1.31
2295 2422 1.413445 ACCTACCACGTAACACTGCAA 59.587 47.619 0.00 0.00 0.00 4.08
2302 2429 5.927954 TCAAATTCAACCTACCACGTAAC 57.072 39.130 0.00 0.00 0.00 2.50
2307 2434 7.602753 AGCTATTTTCAAATTCAACCTACCAC 58.397 34.615 0.00 0.00 0.00 4.16
2309 2436 7.826690 TGAGCTATTTTCAAATTCAACCTACC 58.173 34.615 0.00 0.00 0.00 3.18
2310 2437 9.294030 CATGAGCTATTTTCAAATTCAACCTAC 57.706 33.333 0.00 0.00 0.00 3.18
2328 2455 8.840321 GGTTCAAGCTATTTTATTCATGAGCTA 58.160 33.333 2.66 0.00 39.28 3.32
2330 2457 7.483307 TGGTTCAAGCTATTTTATTCATGAGC 58.517 34.615 0.00 0.00 0.00 4.26
2335 2462 9.515226 ACTAGTTGGTTCAAGCTATTTTATTCA 57.485 29.630 0.00 0.00 0.00 2.57
2336 2463 9.989869 GACTAGTTGGTTCAAGCTATTTTATTC 57.010 33.333 0.00 0.00 0.00 1.75
2337 2464 9.515226 TGACTAGTTGGTTCAAGCTATTTTATT 57.485 29.630 0.00 0.00 0.00 1.40
2339 2466 8.946085 CATGACTAGTTGGTTCAAGCTATTTTA 58.054 33.333 0.00 0.00 0.00 1.52
2340 2467 7.665559 TCATGACTAGTTGGTTCAAGCTATTTT 59.334 33.333 0.00 0.00 0.00 1.82
2346 2473 5.689383 TTTCATGACTAGTTGGTTCAAGC 57.311 39.130 0.00 0.00 0.00 4.01
2348 2475 6.549364 ACCAATTTCATGACTAGTTGGTTCAA 59.451 34.615 17.26 0.00 44.95 2.69
2356 2483 6.299805 TGAGCTACCAATTTCATGACTAGT 57.700 37.500 0.00 0.00 0.00 2.57
2360 2487 5.504665 CCGATTGAGCTACCAATTTCATGAC 60.505 44.000 0.00 0.00 36.93 3.06
2361 2488 4.576053 CCGATTGAGCTACCAATTTCATGA 59.424 41.667 2.46 0.00 36.93 3.07
2362 2489 4.790766 GCCGATTGAGCTACCAATTTCATG 60.791 45.833 2.46 0.00 36.93 3.07
2366 2493 2.722094 TGCCGATTGAGCTACCAATTT 58.278 42.857 2.46 0.00 36.93 1.82
2367 2494 2.418368 TGCCGATTGAGCTACCAATT 57.582 45.000 2.46 0.00 36.93 2.32
2369 2496 3.552132 TTATGCCGATTGAGCTACCAA 57.448 42.857 0.00 0.00 0.00 3.67
2370 2497 3.769739 ATTATGCCGATTGAGCTACCA 57.230 42.857 0.00 0.00 0.00 3.25
2371 2498 4.065088 TCAATTATGCCGATTGAGCTACC 58.935 43.478 0.00 0.00 38.29 3.18
2372 2499 5.673337 TTCAATTATGCCGATTGAGCTAC 57.327 39.130 0.00 0.00 42.54 3.58
2373 2500 4.214119 GCTTCAATTATGCCGATTGAGCTA 59.786 41.667 0.00 0.00 42.54 3.32
2374 2501 3.004106 GCTTCAATTATGCCGATTGAGCT 59.996 43.478 0.00 0.00 42.54 4.09
2427 2556 8.958119 AACATGGTCAAACGATATAACAGTAT 57.042 30.769 0.00 0.00 0.00 2.12
2439 2568 7.590279 ACCTAGATTTTTAACATGGTCAAACG 58.410 34.615 0.00 0.00 0.00 3.60
2441 2570 9.757227 CAAACCTAGATTTTTAACATGGTCAAA 57.243 29.630 0.00 0.00 0.00 2.69
2462 2591 8.403236 ACAAAGTTGTCAATCTAAGTACAAACC 58.597 33.333 0.00 0.00 36.50 3.27
2466 2595 9.990360 TCATACAAAGTTGTCAATCTAAGTACA 57.010 29.630 0.00 0.00 42.35 2.90
2516 2646 8.945193 TGCCAGGACTCCTAATAAAAGTTATAT 58.055 33.333 0.00 0.00 29.64 0.86
2517 2647 8.208903 GTGCCAGGACTCCTAATAAAAGTTATA 58.791 37.037 0.00 0.00 29.64 0.98
2520 2650 5.254115 GTGCCAGGACTCCTAATAAAAGTT 58.746 41.667 0.00 0.00 29.64 2.66
2521 2651 4.324331 GGTGCCAGGACTCCTAATAAAAGT 60.324 45.833 0.00 0.00 29.64 2.66
2522 2652 4.200092 GGTGCCAGGACTCCTAATAAAAG 58.800 47.826 0.00 0.00 29.64 2.27
2538 2668 0.537143 CAACTTGTAGCTGGGTGCCA 60.537 55.000 0.00 0.00 44.23 4.92
2539 2669 1.866853 GCAACTTGTAGCTGGGTGCC 61.867 60.000 0.00 0.00 44.23 5.01
2541 2671 1.267806 CTTGCAACTTGTAGCTGGGTG 59.732 52.381 0.00 0.00 0.00 4.61
2542 2672 1.133792 ACTTGCAACTTGTAGCTGGGT 60.134 47.619 0.00 0.00 0.00 4.51
2543 2673 1.537202 GACTTGCAACTTGTAGCTGGG 59.463 52.381 0.00 0.00 0.00 4.45
2546 2676 2.638480 TGGACTTGCAACTTGTAGCT 57.362 45.000 0.00 0.00 0.00 3.32
2547 2677 3.923017 AATGGACTTGCAACTTGTAGC 57.077 42.857 0.00 0.00 0.00 3.58
2553 2683 5.316167 TCTCATACAAATGGACTTGCAACT 58.684 37.500 0.00 0.00 33.61 3.16
2567 2697 7.568349 AGTGCATATCCTTTTCTCTCATACAA 58.432 34.615 0.00 0.00 0.00 2.41
2570 2700 6.040955 ACGAGTGCATATCCTTTTCTCTCATA 59.959 38.462 0.00 0.00 0.00 2.15
2572 2702 4.160439 ACGAGTGCATATCCTTTTCTCTCA 59.840 41.667 0.00 0.00 0.00 3.27
2575 2705 5.348986 TGTACGAGTGCATATCCTTTTCTC 58.651 41.667 0.00 0.00 0.00 2.87
2582 2712 5.984233 TTTGATTGTACGAGTGCATATCC 57.016 39.130 0.00 0.00 0.00 2.59
2615 2747 6.038356 CAGGTTCAAATAATGACATGAAGCC 58.962 40.000 12.13 6.72 46.19 4.35
2616 2748 6.855836 TCAGGTTCAAATAATGACATGAAGC 58.144 36.000 0.00 9.02 45.68 3.86
2638 2770 3.248024 ACAAAGTGATAGTGACCCCTCA 58.752 45.455 0.00 0.00 0.00 3.86
2641 2773 4.287766 AGAACAAAGTGATAGTGACCCC 57.712 45.455 0.00 0.00 0.00 4.95
2642 2774 4.455877 CCAAGAACAAAGTGATAGTGACCC 59.544 45.833 0.00 0.00 0.00 4.46
2649 2781 9.219603 CTAACAAGATCCAAGAACAAAGTGATA 57.780 33.333 0.00 0.00 0.00 2.15
2651 2783 7.054124 ACTAACAAGATCCAAGAACAAAGTGA 58.946 34.615 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.