Multiple sequence alignment - TraesCS6B01G454000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G454000 chr6B 100.000 3993 0 0 1 3993 711876259 711880251 0.000000e+00 7374.0
1 TraesCS6B01G454000 chr6B 87.451 510 34 10 639 1119 711709443 711709951 9.690000e-156 560.0
2 TraesCS6B01G454000 chr6B 86.749 483 48 8 639 1109 711869715 711870193 1.270000e-144 523.0
3 TraesCS6B01G454000 chr6B 85.684 468 49 12 77 538 711714576 711715031 1.000000e-130 477.0
4 TraesCS6B01G454000 chr6B 89.231 325 25 8 1 318 711754484 711754805 8.040000e-107 398.0
5 TraesCS6B01G454000 chr6B 86.598 291 27 6 829 1109 711762634 711762922 1.080000e-80 311.0
6 TraesCS6B01G454000 chr6B 85.366 287 30 8 641 921 710152052 710151772 1.820000e-73 287.0
7 TraesCS6B01G454000 chr6B 92.021 188 14 1 697 883 710643222 710643035 3.060000e-66 263.0
8 TraesCS6B01G454000 chr6B 86.640 247 15 11 370 613 711755082 711755313 1.420000e-64 257.0
9 TraesCS6B01G454000 chr6B 93.023 86 6 0 531 616 711709190 711709275 4.190000e-25 126.0
10 TraesCS6B01G454000 chr6B 89.412 85 6 1 532 616 711704119 711704038 1.960000e-18 104.0
11 TraesCS6B01G454000 chr6B 81.429 140 7 2 639 759 711703551 711703412 3.280000e-16 97.1
12 TraesCS6B01G454000 chr6B 100.000 30 0 0 355 384 711754814 711754843 5.570000e-04 56.5
13 TraesCS6B01G454000 chr6D 95.086 3907 101 33 8 3871 466620939 466624797 0.000000e+00 6067.0
14 TraesCS6B01G454000 chr6D 88.889 207 20 3 716 921 465967384 465967180 6.620000e-63 252.0
15 TraesCS6B01G454000 chr6D 88.718 195 21 1 697 890 465745388 465745194 1.850000e-58 237.0
16 TraesCS6B01G454000 chr6D 78.571 350 68 5 3649 3991 2899996 2900345 1.440000e-54 224.0
17 TraesCS6B01G454000 chr6A 88.994 636 49 13 1 628 613078087 613078709 0.000000e+00 767.0
18 TraesCS6B01G454000 chr6A 84.225 374 36 7 749 1109 613094123 613094486 3.820000e-90 342.0
19 TraesCS6B01G454000 chr6A 90.351 228 17 4 697 921 613079002 613079227 1.090000e-75 294.0
20 TraesCS6B01G454000 chr6A 85.659 258 29 7 697 948 612109827 612109572 8.510000e-67 265.0
21 TraesCS6B01G454000 chr6A 89.320 206 22 0 697 902 611901379 611901584 3.960000e-65 259.0
22 TraesCS6B01G454000 chr6A 88.550 131 7 3 484 613 613093695 613093818 6.910000e-33 152.0
23 TraesCS6B01G454000 chr6A 82.022 178 29 2 2676 2850 584721183 584721006 8.940000e-32 148.0
24 TraesCS6B01G454000 chr6A 87.059 85 8 1 532 616 612582891 612582972 4.250000e-15 93.5
25 TraesCS6B01G454000 chr1B 86.379 301 31 6 47 344 92338049 92337756 1.790000e-83 320.0
26 TraesCS6B01G454000 chr1B 85.358 321 21 16 326 628 92327790 92327478 3.880000e-80 309.0
27 TraesCS6B01G454000 chr1B 99.219 128 1 0 994 1121 92353243 92353116 8.630000e-57 231.0
28 TraesCS6B01G454000 chr1B 90.816 98 7 2 531 628 92353372 92353277 3.240000e-26 130.0
29 TraesCS6B01G454000 chr7D 78.098 347 68 7 3650 3992 29728500 29728842 3.130000e-51 213.0
30 TraesCS6B01G454000 chr7B 77.937 349 63 11 3649 3989 650562892 650563234 5.230000e-49 206.0
31 TraesCS6B01G454000 chr7B 77.650 349 64 11 3649 3989 650574714 650575056 2.430000e-47 200.0
32 TraesCS6B01G454000 chr7B 77.650 349 64 11 3649 3989 650585673 650586015 2.430000e-47 200.0
33 TraesCS6B01G454000 chr7B 84.146 82 8 3 3188 3269 329924812 329924736 1.540000e-09 75.0
34 TraesCS6B01G454000 chr4A 78.873 284 51 7 3647 3924 580903103 580903383 2.450000e-42 183.0
35 TraesCS6B01G454000 chr1D 76.877 333 66 9 3669 3992 477418516 477418186 1.140000e-40 178.0
36 TraesCS6B01G454000 chr1A 76.752 314 64 7 3675 3982 22047878 22048188 2.470000e-37 167.0
37 TraesCS6B01G454000 chr1A 85.185 54 8 0 179 232 440458314 440458261 5.570000e-04 56.5
38 TraesCS6B01G454000 chr2B 79.592 196 39 1 1312 1507 118465426 118465232 5.380000e-29 139.0
39 TraesCS6B01G454000 chr4D 76.136 264 56 4 140 398 379571852 379572113 9.000000e-27 132.0
40 TraesCS6B01G454000 chr4B 75.486 257 55 5 140 391 466730821 466731074 7.010000e-23 119.0
41 TraesCS6B01G454000 chr5A 87.778 90 8 1 532 621 46960569 46960483 7.060000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G454000 chr6B 711876259 711880251 3992 False 7374.000000 7374 100.0000 1 3993 1 chr6B.!!$F4 3992
1 TraesCS6B01G454000 chr6B 711709190 711709951 761 False 343.000000 560 90.2370 531 1119 2 chr6B.!!$F5 588
2 TraesCS6B01G454000 chr6B 711754484 711755313 829 False 237.166667 398 91.9570 1 613 3 chr6B.!!$F6 612
3 TraesCS6B01G454000 chr6D 466620939 466624797 3858 False 6067.000000 6067 95.0860 8 3871 1 chr6D.!!$F2 3863
4 TraesCS6B01G454000 chr6A 613078087 613079227 1140 False 530.500000 767 89.6725 1 921 2 chr6A.!!$F3 920
5 TraesCS6B01G454000 chr6A 613093695 613094486 791 False 247.000000 342 86.3875 484 1109 2 chr6A.!!$F4 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 386 0.250124 TGACGGTCCTTTGTGCGAAT 60.250 50.0 5.55 0.0 0.00 3.34 F
1668 2250 0.535335 TCAGGAACACCATAGCGACC 59.465 55.0 0.00 0.0 0.00 4.79 F
2417 2999 0.526211 TCTGACCTGGACGATGTTCG 59.474 55.0 0.00 0.0 46.93 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 2445 1.357690 CACCAGCCGCTTGCATATG 59.642 57.895 0.00 0.00 44.83 1.78 R
2785 3378 1.067565 ACAGCAGTGACATAGTCCACG 60.068 52.381 0.00 0.00 0.00 4.94 R
3874 4470 0.322975 ACAACTACTGCAGCTCCAGG 59.677 55.000 15.27 1.77 37.16 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.358406 AGATGTAATGATAATCCTGAATTTGCA 57.642 29.630 0.00 0.00 0.00 4.08
50 51 4.588528 ACCACCTTACAAGAATGCAAACAT 59.411 37.500 0.00 0.00 38.49 2.71
114 115 2.588877 GTGTGTCTGGTGCGCTGT 60.589 61.111 9.73 0.00 0.00 4.40
203 211 1.153309 CAGCGATGGAGCCATGTCA 60.153 57.895 6.76 0.00 36.70 3.58
224 232 5.046231 GTCAAGTTAGGGTGAAGAGGAGATT 60.046 44.000 0.00 0.00 0.00 2.40
318 353 2.555325 AGTGTCGTCGGTCTTGATTGTA 59.445 45.455 0.00 0.00 0.00 2.41
319 354 3.005050 AGTGTCGTCGGTCTTGATTGTAA 59.995 43.478 0.00 0.00 0.00 2.41
320 355 3.924686 GTGTCGTCGGTCTTGATTGTAAT 59.075 43.478 0.00 0.00 0.00 1.89
321 356 4.387862 GTGTCGTCGGTCTTGATTGTAATT 59.612 41.667 0.00 0.00 0.00 1.40
322 357 4.992319 TGTCGTCGGTCTTGATTGTAATTT 59.008 37.500 0.00 0.00 0.00 1.82
323 358 5.467399 TGTCGTCGGTCTTGATTGTAATTTT 59.533 36.000 0.00 0.00 0.00 1.82
324 359 6.013689 GTCGTCGGTCTTGATTGTAATTTTC 58.986 40.000 0.00 0.00 0.00 2.29
325 360 5.929992 TCGTCGGTCTTGATTGTAATTTTCT 59.070 36.000 0.00 0.00 0.00 2.52
326 361 6.425721 TCGTCGGTCTTGATTGTAATTTTCTT 59.574 34.615 0.00 0.00 0.00 2.52
327 362 7.041644 TCGTCGGTCTTGATTGTAATTTTCTTT 60.042 33.333 0.00 0.00 0.00 2.52
328 363 7.268447 CGTCGGTCTTGATTGTAATTTTCTTTC 59.732 37.037 0.00 0.00 0.00 2.62
329 364 8.290325 GTCGGTCTTGATTGTAATTTTCTTTCT 58.710 33.333 0.00 0.00 0.00 2.52
330 365 8.504005 TCGGTCTTGATTGTAATTTTCTTTCTC 58.496 33.333 0.00 0.00 0.00 2.87
331 366 8.507249 CGGTCTTGATTGTAATTTTCTTTCTCT 58.493 33.333 0.00 0.00 0.00 3.10
336 371 9.663904 TTGATTGTAATTTTCTTTCTCTTGACG 57.336 29.630 0.00 0.00 0.00 4.35
337 372 8.289618 TGATTGTAATTTTCTTTCTCTTGACGG 58.710 33.333 0.00 0.00 0.00 4.79
338 373 7.562454 TTGTAATTTTCTTTCTCTTGACGGT 57.438 32.000 0.00 0.00 0.00 4.83
339 374 7.186021 TGTAATTTTCTTTCTCTTGACGGTC 57.814 36.000 0.00 0.00 0.00 4.79
340 375 5.690997 AATTTTCTTTCTCTTGACGGTCC 57.309 39.130 5.55 0.00 0.00 4.46
341 376 4.417426 TTTTCTTTCTCTTGACGGTCCT 57.583 40.909 5.55 0.00 0.00 3.85
342 377 4.417426 TTTCTTTCTCTTGACGGTCCTT 57.583 40.909 5.55 0.00 0.00 3.36
343 378 4.417426 TTCTTTCTCTTGACGGTCCTTT 57.583 40.909 5.55 0.00 0.00 3.11
344 379 3.728845 TCTTTCTCTTGACGGTCCTTTG 58.271 45.455 5.55 0.00 0.00 2.77
345 380 3.134081 TCTTTCTCTTGACGGTCCTTTGT 59.866 43.478 5.55 0.00 0.00 2.83
346 381 2.526304 TCTCTTGACGGTCCTTTGTG 57.474 50.000 5.55 0.00 0.00 3.33
347 382 0.868406 CTCTTGACGGTCCTTTGTGC 59.132 55.000 5.55 0.00 0.00 4.57
348 383 0.878523 TCTTGACGGTCCTTTGTGCG 60.879 55.000 5.55 0.00 0.00 5.34
351 386 0.250124 TGACGGTCCTTTGTGCGAAT 60.250 50.000 5.55 0.00 0.00 3.34
399 685 5.209818 AGTTTTGTCAGGTCGATGTCTTA 57.790 39.130 0.00 0.00 0.00 2.10
511 802 9.908747 AAGTAGCAGAGAGTAGAGAAATACTAA 57.091 33.333 0.00 0.00 36.13 2.24
512 803 9.555727 AGTAGCAGAGAGTAGAGAAATACTAAG 57.444 37.037 0.00 0.00 36.13 2.18
513 804 9.333724 GTAGCAGAGAGTAGAGAAATACTAAGT 57.666 37.037 0.00 0.00 36.13 2.24
515 806 9.333724 AGCAGAGAGTAGAGAAATACTAAGTAC 57.666 37.037 0.00 0.00 36.13 2.73
516 807 9.111613 GCAGAGAGTAGAGAAATACTAAGTACA 57.888 37.037 0.00 0.00 36.13 2.90
823 1375 3.938963 TCCGGATTACAATCAGAAACAGC 59.061 43.478 0.00 0.00 37.15 4.40
975 1540 1.073125 TGCCAAATTTCGGAGGAGACA 59.927 47.619 9.90 0.00 0.00 3.41
976 1541 1.740025 GCCAAATTTCGGAGGAGACAG 59.260 52.381 9.90 0.00 0.00 3.51
1170 1752 8.650143 AAAAATAGGAGCATGGTAGAAAAAGA 57.350 30.769 0.00 0.00 0.00 2.52
1175 1757 4.327680 GAGCATGGTAGAAAAAGAGTGGT 58.672 43.478 0.00 0.00 0.00 4.16
1189 1771 7.686438 AAAAGAGTGGTCAAAATTGCTTTTT 57.314 28.000 0.00 0.00 38.05 1.94
1283 1865 6.613233 AGACTGTACGTTAGAAATCACTCTG 58.387 40.000 0.00 0.00 0.00 3.35
1449 2031 2.513897 CGTTGGAAGCCGATCCCC 60.514 66.667 0.00 0.00 38.82 4.81
1460 2042 1.261238 CCGATCCCCTCTATGCTCCC 61.261 65.000 0.00 0.00 0.00 4.30
1513 2095 3.226429 GAGCACGACAGGACCTGCA 62.226 63.158 21.95 0.00 34.37 4.41
1663 2245 3.368843 CCAGACTGTCAGGAACACCATAG 60.369 52.174 13.48 0.00 33.24 2.23
1668 2250 0.535335 TCAGGAACACCATAGCGACC 59.465 55.000 0.00 0.00 0.00 4.79
1719 2301 6.865834 ATCTTGACAGAGAAGGTGACTAAT 57.134 37.500 0.00 0.00 32.87 1.73
1795 2377 2.636647 TGCTTGTCCAGACACATTCA 57.363 45.000 0.00 0.00 41.67 2.57
1863 2445 5.491982 TCAGACTTCCCTAAAATCTTCAGC 58.508 41.667 0.00 0.00 0.00 4.26
1875 2457 1.302366 TCTTCAGCATATGCAAGCGG 58.698 50.000 28.62 14.26 45.16 5.52
1903 2485 2.664851 TCCGCTTGGACAACTGCG 60.665 61.111 10.53 10.53 46.74 5.18
2055 2637 0.744874 CCTCTCCGCGTGATCCTTTA 59.255 55.000 4.92 0.00 0.00 1.85
2206 2788 8.217131 TGAAAGTGAAAAGGTTAGTAAAGACC 57.783 34.615 0.00 0.00 36.15 3.85
2207 2789 7.830201 TGAAAGTGAAAAGGTTAGTAAAGACCA 59.170 33.333 0.00 0.00 38.42 4.02
2208 2790 7.563888 AAGTGAAAAGGTTAGTAAAGACCAC 57.436 36.000 0.00 0.00 38.42 4.16
2209 2791 6.896883 AGTGAAAAGGTTAGTAAAGACCACT 58.103 36.000 0.00 0.00 38.42 4.00
2210 2792 8.026396 AGTGAAAAGGTTAGTAAAGACCACTA 57.974 34.615 0.00 0.00 38.42 2.74
2211 2793 7.930325 AGTGAAAAGGTTAGTAAAGACCACTAC 59.070 37.037 0.00 0.00 38.42 2.73
2231 2813 8.633561 CCACTACTAGAGTATTGTTGATGATGA 58.366 37.037 0.00 0.00 35.64 2.92
2234 2816 7.993821 ACTAGAGTATTGTTGATGATGAACG 57.006 36.000 0.00 0.00 0.00 3.95
2279 2861 9.067986 CCTTTATTTTGTGAGGTTCTAGTCTTT 57.932 33.333 0.00 0.00 0.00 2.52
2404 2986 6.016777 ACATTTCAAAAGACTGTGATCTGACC 60.017 38.462 0.00 0.00 0.00 4.02
2417 2999 0.526211 TCTGACCTGGACGATGTTCG 59.474 55.000 0.00 0.00 46.93 3.95
2478 3060 9.537848 CATCACGGTAAAGTCTTTAATTTGTAC 57.462 33.333 6.61 0.00 0.00 2.90
2532 3114 3.176708 GCTGCATGCTGAAGTTACAATG 58.823 45.455 26.71 0.00 38.95 2.82
2621 3214 2.228115 GCAAATGTGTTGCAGGTGC 58.772 52.632 6.19 0.00 44.34 5.01
2638 3231 1.113517 TGCGGGATAGGTGCCTACTC 61.114 60.000 0.00 0.71 32.82 2.59
2639 3232 1.113517 GCGGGATAGGTGCCTACTCA 61.114 60.000 0.00 0.00 32.82 3.41
2641 3234 1.546476 CGGGATAGGTGCCTACTCATC 59.454 57.143 0.00 0.00 32.82 2.92
2695 3288 1.226435 CGAGGAGAAGAAGGACGCG 60.226 63.158 3.53 3.53 0.00 6.01
2734 3327 3.727079 CGTCTGCATCAGATTTCAAGCAC 60.727 47.826 0.00 0.00 42.73 4.40
2774 3367 4.706476 TCAGGATCATTGGGTTTCAATCAC 59.294 41.667 0.00 0.00 43.70 3.06
2777 3370 5.186409 AGGATCATTGGGTTTCAATCACAAG 59.814 40.000 0.00 0.00 43.70 3.16
2785 3378 5.163561 TGGGTTTCAATCACAAGACAAGTTC 60.164 40.000 0.00 0.00 0.00 3.01
2791 3384 2.546778 TCACAAGACAAGTTCGTGGAC 58.453 47.619 0.00 0.00 37.98 4.02
3081 3674 3.126171 TGTTTGCCTATGTTATCGTGTGC 59.874 43.478 0.00 0.00 0.00 4.57
3305 3899 8.665685 GGTTTATAAATCGAGCCACCATATTAG 58.334 37.037 0.31 0.00 0.00 1.73
3570 4164 7.561021 TTGCGAGTAAGATTAAATAATGCCA 57.439 32.000 0.00 0.00 0.00 4.92
3610 4204 4.978083 TGAGTCCATACTTCTTACGGAC 57.022 45.455 0.00 0.00 45.34 4.79
3761 4357 6.152154 TCAAGATCACCGAACAATCACTACTA 59.848 38.462 0.00 0.00 0.00 1.82
3880 4476 3.382832 AGGAACGGCGTCCTGGAG 61.383 66.667 23.75 0.00 46.75 3.86
3882 4478 4.070552 GAACGGCGTCCTGGAGCT 62.071 66.667 15.17 0.00 0.00 4.09
3883 4479 4.379243 AACGGCGTCCTGGAGCTG 62.379 66.667 15.17 19.11 44.74 4.24
3887 4483 4.385405 GCGTCCTGGAGCTGCAGT 62.385 66.667 30.32 1.59 0.00 4.40
3888 4484 3.006756 GCGTCCTGGAGCTGCAGTA 62.007 63.158 30.32 15.63 0.00 2.74
3889 4485 1.140589 CGTCCTGGAGCTGCAGTAG 59.859 63.158 30.32 18.05 0.00 2.57
3890 4486 1.599606 CGTCCTGGAGCTGCAGTAGT 61.600 60.000 30.32 0.00 0.00 2.73
3891 4487 0.610687 GTCCTGGAGCTGCAGTAGTT 59.389 55.000 30.32 0.00 0.00 2.24
3892 4488 0.610174 TCCTGGAGCTGCAGTAGTTG 59.390 55.000 30.32 16.67 0.00 3.16
3893 4489 0.322975 CCTGGAGCTGCAGTAGTTGT 59.677 55.000 30.32 0.00 0.00 3.32
3894 4490 1.271054 CCTGGAGCTGCAGTAGTTGTT 60.271 52.381 30.32 0.00 0.00 2.83
3895 4491 1.802960 CTGGAGCTGCAGTAGTTGTTG 59.197 52.381 25.76 0.00 0.00 3.33
3896 4492 1.416030 TGGAGCTGCAGTAGTTGTTGA 59.584 47.619 16.64 0.00 0.00 3.18
3897 4493 2.158827 TGGAGCTGCAGTAGTTGTTGAA 60.159 45.455 16.64 0.00 0.00 2.69
3898 4494 2.224314 GGAGCTGCAGTAGTTGTTGAAC 59.776 50.000 16.64 0.00 0.00 3.18
3899 4495 2.222027 AGCTGCAGTAGTTGTTGAACC 58.778 47.619 16.64 0.00 31.81 3.62
3900 4496 1.266989 GCTGCAGTAGTTGTTGAACCC 59.733 52.381 16.64 0.00 31.81 4.11
3901 4497 2.851195 CTGCAGTAGTTGTTGAACCCT 58.149 47.619 5.25 0.00 31.81 4.34
3902 4498 3.214328 CTGCAGTAGTTGTTGAACCCTT 58.786 45.455 5.25 0.00 31.81 3.95
3903 4499 2.948979 TGCAGTAGTTGTTGAACCCTTG 59.051 45.455 0.00 0.00 31.81 3.61
3904 4500 2.287608 GCAGTAGTTGTTGAACCCTTGC 60.288 50.000 0.00 0.00 31.81 4.01
3905 4501 2.948979 CAGTAGTTGTTGAACCCTTGCA 59.051 45.455 0.00 0.00 31.81 4.08
3906 4502 3.569701 CAGTAGTTGTTGAACCCTTGCAT 59.430 43.478 0.00 0.00 31.81 3.96
3907 4503 4.759693 CAGTAGTTGTTGAACCCTTGCATA 59.240 41.667 0.00 0.00 31.81 3.14
3908 4504 5.003804 AGTAGTTGTTGAACCCTTGCATAG 58.996 41.667 0.00 0.00 31.81 2.23
3909 4505 4.098914 AGTTGTTGAACCCTTGCATAGA 57.901 40.909 0.00 0.00 31.81 1.98
3910 4506 4.666512 AGTTGTTGAACCCTTGCATAGAT 58.333 39.130 0.00 0.00 31.81 1.98
3911 4507 4.460382 AGTTGTTGAACCCTTGCATAGATG 59.540 41.667 0.00 0.00 31.81 2.90
3912 4508 4.032960 TGTTGAACCCTTGCATAGATGT 57.967 40.909 0.00 0.00 0.00 3.06
3913 4509 3.758023 TGTTGAACCCTTGCATAGATGTG 59.242 43.478 0.00 0.00 0.00 3.21
3914 4510 3.998913 TGAACCCTTGCATAGATGTGA 57.001 42.857 0.00 0.00 0.00 3.58
3915 4511 4.299586 TGAACCCTTGCATAGATGTGAA 57.700 40.909 0.00 0.00 0.00 3.18
3916 4512 4.264253 TGAACCCTTGCATAGATGTGAAG 58.736 43.478 0.00 0.00 0.00 3.02
3917 4513 2.648059 ACCCTTGCATAGATGTGAAGC 58.352 47.619 0.00 0.00 0.00 3.86
3918 4514 2.025981 ACCCTTGCATAGATGTGAAGCA 60.026 45.455 0.00 0.00 0.00 3.91
3919 4515 3.220110 CCCTTGCATAGATGTGAAGCAT 58.780 45.455 0.00 0.00 41.24 3.79
3932 4528 5.970317 TGTGAAGCATCTGACATCAAATT 57.030 34.783 0.00 0.00 0.00 1.82
3933 4529 5.946298 TGTGAAGCATCTGACATCAAATTC 58.054 37.500 0.00 0.00 0.00 2.17
3934 4530 5.106038 TGTGAAGCATCTGACATCAAATTCC 60.106 40.000 0.00 0.00 0.00 3.01
3935 4531 4.095334 TGAAGCATCTGACATCAAATTCCG 59.905 41.667 0.00 0.00 0.00 4.30
3936 4532 2.357009 AGCATCTGACATCAAATTCCGC 59.643 45.455 0.00 0.00 0.00 5.54
3937 4533 2.097954 GCATCTGACATCAAATTCCGCA 59.902 45.455 0.00 0.00 0.00 5.69
3938 4534 3.688272 CATCTGACATCAAATTCCGCAC 58.312 45.455 0.00 0.00 0.00 5.34
3939 4535 2.777094 TCTGACATCAAATTCCGCACA 58.223 42.857 0.00 0.00 0.00 4.57
3940 4536 3.346315 TCTGACATCAAATTCCGCACAT 58.654 40.909 0.00 0.00 0.00 3.21
3941 4537 3.127376 TCTGACATCAAATTCCGCACATG 59.873 43.478 0.00 0.00 0.00 3.21
3942 4538 2.164017 TGACATCAAATTCCGCACATGG 59.836 45.455 0.00 0.00 0.00 3.66
3943 4539 1.135024 ACATCAAATTCCGCACATGGC 60.135 47.619 0.00 0.00 39.90 4.40
3953 4549 2.840974 GCACATGGCGAGTTACTGT 58.159 52.632 0.00 0.00 0.00 3.55
3954 4550 2.004583 GCACATGGCGAGTTACTGTA 57.995 50.000 0.00 0.00 0.00 2.74
3955 4551 2.343101 GCACATGGCGAGTTACTGTAA 58.657 47.619 0.00 0.00 0.00 2.41
3956 4552 2.093783 GCACATGGCGAGTTACTGTAAC 59.906 50.000 20.27 20.27 38.94 2.50
3957 4553 2.671396 CACATGGCGAGTTACTGTAACC 59.329 50.000 23.22 15.11 39.47 2.85
3958 4554 2.565834 ACATGGCGAGTTACTGTAACCT 59.434 45.455 23.22 12.93 39.47 3.50
3959 4555 3.187700 CATGGCGAGTTACTGTAACCTC 58.812 50.000 23.22 18.30 39.47 3.85
3960 4556 2.241160 TGGCGAGTTACTGTAACCTCA 58.759 47.619 23.22 14.74 39.47 3.86
3961 4557 2.829720 TGGCGAGTTACTGTAACCTCAT 59.170 45.455 23.22 8.23 39.47 2.90
3962 4558 3.119245 TGGCGAGTTACTGTAACCTCATC 60.119 47.826 23.22 14.72 39.47 2.92
3963 4559 3.119245 GGCGAGTTACTGTAACCTCATCA 60.119 47.826 23.22 0.00 39.47 3.07
3964 4560 3.858238 GCGAGTTACTGTAACCTCATCAC 59.142 47.826 23.22 8.10 39.47 3.06
3965 4561 4.421948 CGAGTTACTGTAACCTCATCACC 58.578 47.826 23.22 0.00 39.47 4.02
3966 4562 4.158025 CGAGTTACTGTAACCTCATCACCT 59.842 45.833 23.22 5.27 39.47 4.00
3967 4563 5.652518 GAGTTACTGTAACCTCATCACCTC 58.347 45.833 23.22 10.07 39.47 3.85
3968 4564 5.084519 AGTTACTGTAACCTCATCACCTCA 58.915 41.667 23.22 0.00 39.47 3.86
3969 4565 5.542635 AGTTACTGTAACCTCATCACCTCAA 59.457 40.000 23.22 0.00 39.47 3.02
3970 4566 4.543590 ACTGTAACCTCATCACCTCAAG 57.456 45.455 0.00 0.00 0.00 3.02
3971 4567 3.261897 ACTGTAACCTCATCACCTCAAGG 59.738 47.826 0.00 0.00 42.17 3.61
3972 4568 3.515502 CTGTAACCTCATCACCTCAAGGA 59.484 47.826 2.30 0.00 38.94 3.36
3973 4569 3.515502 TGTAACCTCATCACCTCAAGGAG 59.484 47.826 2.30 0.00 38.94 3.69
3974 4570 2.630889 ACCTCATCACCTCAAGGAGA 57.369 50.000 2.30 0.19 39.09 3.71
3975 4571 2.183679 ACCTCATCACCTCAAGGAGAC 58.816 52.381 2.30 0.00 37.62 3.36
3976 4572 1.135915 CCTCATCACCTCAAGGAGACG 59.864 57.143 2.30 0.00 37.62 4.18
3977 4573 1.135915 CTCATCACCTCAAGGAGACGG 59.864 57.143 2.30 0.00 37.62 4.79
3978 4574 0.460987 CATCACCTCAAGGAGACGGC 60.461 60.000 2.30 0.00 37.62 5.68
3979 4575 1.949847 ATCACCTCAAGGAGACGGCG 61.950 60.000 4.80 4.80 37.62 6.46
3980 4576 3.382832 ACCTCAAGGAGACGGCGG 61.383 66.667 13.24 0.00 38.94 6.13
3981 4577 4.148825 CCTCAAGGAGACGGCGGG 62.149 72.222 13.24 0.00 37.39 6.13
3982 4578 3.068691 CTCAAGGAGACGGCGGGA 61.069 66.667 13.24 0.00 0.00 5.14
3983 4579 2.602267 TCAAGGAGACGGCGGGAA 60.602 61.111 13.24 0.00 0.00 3.97
3984 4580 1.961180 CTCAAGGAGACGGCGGGAAT 61.961 60.000 13.24 0.00 0.00 3.01
3985 4581 1.521681 CAAGGAGACGGCGGGAATC 60.522 63.158 13.24 0.00 0.00 2.52
3986 4582 1.686110 AAGGAGACGGCGGGAATCT 60.686 57.895 13.24 4.32 0.00 2.40
3987 4583 0.396695 AAGGAGACGGCGGGAATCTA 60.397 55.000 13.24 0.00 0.00 1.98
3988 4584 1.108132 AGGAGACGGCGGGAATCTAC 61.108 60.000 13.24 5.50 0.00 2.59
3989 4585 1.008767 GAGACGGCGGGAATCTACG 60.009 63.158 13.24 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.957497 TGTTTGCATTCTTGTAAGGTGGT 59.043 39.130 0.00 0.00 0.00 4.16
50 51 4.040426 TGGCGCTTGGCACCCATA 62.040 61.111 7.64 0.00 44.19 2.74
114 115 2.892852 CTGTTGAAAGAATTGGCCAGGA 59.107 45.455 5.11 0.00 0.00 3.86
177 181 1.357907 GCTCCATCGCTGATATGCTC 58.642 55.000 0.00 0.00 0.00 4.26
203 211 4.160626 CGAATCTCCTCTTCACCCTAACTT 59.839 45.833 0.00 0.00 0.00 2.66
318 353 5.377478 AGGACCGTCAAGAGAAAGAAAATT 58.623 37.500 0.00 0.00 0.00 1.82
319 354 4.974399 AGGACCGTCAAGAGAAAGAAAAT 58.026 39.130 0.00 0.00 0.00 1.82
320 355 4.417426 AGGACCGTCAAGAGAAAGAAAA 57.583 40.909 0.00 0.00 0.00 2.29
321 356 4.417426 AAGGACCGTCAAGAGAAAGAAA 57.583 40.909 0.00 0.00 0.00 2.52
322 357 4.127171 CAAAGGACCGTCAAGAGAAAGAA 58.873 43.478 0.00 0.00 0.00 2.52
323 358 3.134081 ACAAAGGACCGTCAAGAGAAAGA 59.866 43.478 0.00 0.00 0.00 2.52
324 359 3.248602 CACAAAGGACCGTCAAGAGAAAG 59.751 47.826 0.00 0.00 0.00 2.62
325 360 3.202906 CACAAAGGACCGTCAAGAGAAA 58.797 45.455 0.00 0.00 0.00 2.52
326 361 2.833794 CACAAAGGACCGTCAAGAGAA 58.166 47.619 0.00 0.00 0.00 2.87
327 362 1.540363 GCACAAAGGACCGTCAAGAGA 60.540 52.381 0.00 0.00 0.00 3.10
328 363 0.868406 GCACAAAGGACCGTCAAGAG 59.132 55.000 0.00 0.00 0.00 2.85
329 364 0.878523 CGCACAAAGGACCGTCAAGA 60.879 55.000 0.00 0.00 0.00 3.02
330 365 0.878523 TCGCACAAAGGACCGTCAAG 60.879 55.000 0.00 0.00 0.00 3.02
331 366 0.462225 TTCGCACAAAGGACCGTCAA 60.462 50.000 0.00 0.00 0.00 3.18
332 367 0.250124 ATTCGCACAAAGGACCGTCA 60.250 50.000 0.00 0.00 0.00 4.35
333 368 0.165944 CATTCGCACAAAGGACCGTC 59.834 55.000 0.00 0.00 0.00 4.79
334 369 1.852067 GCATTCGCACAAAGGACCGT 61.852 55.000 0.00 0.00 38.36 4.83
335 370 1.154225 GCATTCGCACAAAGGACCG 60.154 57.895 0.00 0.00 38.36 4.79
336 371 1.398390 CTAGCATTCGCACAAAGGACC 59.602 52.381 0.00 0.00 42.27 4.46
337 372 1.202076 GCTAGCATTCGCACAAAGGAC 60.202 52.381 10.63 0.00 42.27 3.85
338 373 1.086696 GCTAGCATTCGCACAAAGGA 58.913 50.000 10.63 0.00 42.27 3.36
339 374 1.089920 AGCTAGCATTCGCACAAAGG 58.910 50.000 18.83 0.00 42.27 3.11
340 375 2.907910 AAGCTAGCATTCGCACAAAG 57.092 45.000 18.83 0.00 42.27 2.77
341 376 2.551887 TGAAAGCTAGCATTCGCACAAA 59.448 40.909 23.41 6.20 42.27 2.83
342 377 2.150390 TGAAAGCTAGCATTCGCACAA 58.850 42.857 23.41 6.85 42.27 3.33
343 378 1.733912 CTGAAAGCTAGCATTCGCACA 59.266 47.619 23.41 9.30 42.27 4.57
344 379 2.002586 TCTGAAAGCTAGCATTCGCAC 58.997 47.619 23.41 5.38 42.27 5.34
345 380 2.385013 TCTGAAAGCTAGCATTCGCA 57.615 45.000 23.41 12.32 42.27 5.10
346 381 2.611292 ACATCTGAAAGCTAGCATTCGC 59.389 45.455 23.41 6.36 38.99 4.70
347 382 4.118410 AGACATCTGAAAGCTAGCATTCG 58.882 43.478 23.41 18.44 0.00 3.34
348 383 6.434018 AAAGACATCTGAAAGCTAGCATTC 57.566 37.500 22.59 22.59 0.00 2.67
351 386 6.936900 AGTAAAAAGACATCTGAAAGCTAGCA 59.063 34.615 18.83 0.00 0.00 3.49
959 1524 1.351017 TGCCTGTCTCCTCCGAAATTT 59.649 47.619 0.00 0.00 0.00 1.82
975 1540 0.610232 GATGCCACTGGAGTTTGCCT 60.610 55.000 0.00 0.00 0.00 4.75
976 1541 1.598701 GGATGCCACTGGAGTTTGCC 61.599 60.000 0.00 0.00 0.00 4.52
1189 1771 5.295950 CAATTGTGCTATTTTCCACACCAA 58.704 37.500 0.00 0.00 41.26 3.67
1248 1830 7.559486 TCTAACGTACAGTCTCCACTTATAGA 58.441 38.462 0.00 0.00 0.00 1.98
1249 1831 7.783090 TCTAACGTACAGTCTCCACTTATAG 57.217 40.000 0.00 0.00 0.00 1.31
1250 1832 8.565896 TTTCTAACGTACAGTCTCCACTTATA 57.434 34.615 0.00 0.00 0.00 0.98
1251 1833 7.458409 TTTCTAACGTACAGTCTCCACTTAT 57.542 36.000 0.00 0.00 0.00 1.73
1257 1839 5.952033 AGTGATTTCTAACGTACAGTCTCC 58.048 41.667 0.00 0.00 0.00 3.71
1261 1843 6.570672 TCAGAGTGATTTCTAACGTACAGT 57.429 37.500 0.00 0.00 0.00 3.55
1283 1865 3.624777 TGGCATGGAAGGAAGAGAAATC 58.375 45.455 0.00 0.00 0.00 2.17
1449 2031 4.785301 TGGAAATTTCAGGGAGCATAGAG 58.215 43.478 19.49 0.00 0.00 2.43
1460 2042 6.873605 GGAACCAACCTTTATGGAAATTTCAG 59.126 38.462 19.49 7.85 40.56 3.02
1513 2095 2.075355 TTGGCCCGAACCACCTCATT 62.075 55.000 0.00 0.00 40.19 2.57
1668 2250 2.031120 TCAGCCAAACCAACCTTCTTG 58.969 47.619 0.00 0.00 0.00 3.02
1719 2301 3.119495 CCATATCGTCATCGGTGCATCTA 60.119 47.826 0.00 0.00 37.69 1.98
1729 2311 4.227538 CCGTAAGTGACCATATCGTCATC 58.772 47.826 6.44 1.55 44.27 2.92
1795 2377 1.452953 TTGAGTCGCGTGAGACCACT 61.453 55.000 5.77 0.00 41.83 4.00
1863 2445 1.357690 CACCAGCCGCTTGCATATG 59.642 57.895 0.00 0.00 44.83 1.78
1875 2457 2.032681 AAGCGGAGGAACACCAGC 59.967 61.111 0.00 0.00 39.76 4.85
1903 2485 2.094675 CAAGGACATCAACCCCATGTC 58.905 52.381 4.52 4.52 46.50 3.06
2055 2637 3.763897 GCAGTGGGACATAACCAAAAGAT 59.236 43.478 0.00 0.00 44.52 2.40
2155 2737 3.164268 TCAAATGCAGGTTGCTTATGGT 58.836 40.909 7.82 0.00 45.31 3.55
2172 2754 9.418045 CTAACCTTTTCACTTTCAAAGTTCAAA 57.582 29.630 0.00 0.12 40.46 2.69
2203 2785 7.997482 TCATCAACAATACTCTAGTAGTGGTC 58.003 38.462 18.58 0.00 42.01 4.02
2204 2786 7.956328 TCATCAACAATACTCTAGTAGTGGT 57.044 36.000 18.58 11.54 45.94 4.16
2208 2790 9.175060 CGTTCATCATCAACAATACTCTAGTAG 57.825 37.037 0.00 0.00 33.52 2.57
2209 2791 8.683615 ACGTTCATCATCAACAATACTCTAGTA 58.316 33.333 0.00 0.00 34.67 1.82
2210 2792 7.548097 ACGTTCATCATCAACAATACTCTAGT 58.452 34.615 0.00 0.00 0.00 2.57
2211 2793 7.993821 ACGTTCATCATCAACAATACTCTAG 57.006 36.000 0.00 0.00 0.00 2.43
2231 2813 4.574828 GGCATGACCACAGAATATTACGTT 59.425 41.667 0.00 0.00 38.86 3.99
2234 2816 6.699575 AAAGGCATGACCACAGAATATTAC 57.300 37.500 0.00 0.00 43.14 1.89
2243 2825 4.586421 TCACAAAATAAAGGCATGACCACA 59.414 37.500 0.00 0.00 43.14 4.17
2287 2869 9.866655 ACCCAAATCTGCAGAAGATATTAATAA 57.133 29.630 22.50 0.00 45.37 1.40
2288 2870 9.866655 AACCCAAATCTGCAGAAGATATTAATA 57.133 29.630 22.50 0.00 45.37 0.98
2289 2871 8.773033 AACCCAAATCTGCAGAAGATATTAAT 57.227 30.769 22.50 0.00 45.37 1.40
2300 2882 4.178545 CAGGTTTAACCCAAATCTGCAG 57.821 45.455 10.93 7.63 45.81 4.41
2377 2959 6.994496 TCAGATCACAGTCTTTTGAAATGTCT 59.006 34.615 0.00 0.00 30.90 3.41
2386 2968 3.648067 TCCAGGTCAGATCACAGTCTTTT 59.352 43.478 0.00 0.00 0.00 2.27
2387 2969 3.007398 GTCCAGGTCAGATCACAGTCTTT 59.993 47.826 0.00 0.00 0.00 2.52
2532 3114 1.529010 CGGCGCTGCAAGTTAATACAC 60.529 52.381 7.64 0.00 35.30 2.90
2621 3214 1.546476 GATGAGTAGGCACCTATCCCG 59.454 57.143 0.00 0.00 0.00 5.14
2638 3231 2.560542 CCTCTCGGTCTTATCCCTGATG 59.439 54.545 0.00 0.00 0.00 3.07
2639 3232 2.447429 TCCTCTCGGTCTTATCCCTGAT 59.553 50.000 0.00 0.00 0.00 2.90
2641 3234 2.366640 TCCTCTCGGTCTTATCCCTG 57.633 55.000 0.00 0.00 0.00 4.45
2695 3288 1.966451 CGTTTCCCACTCTGTGCCC 60.966 63.158 0.00 0.00 31.34 5.36
2734 3327 1.466167 CTGAGCACCGAAAGATTGTGG 59.534 52.381 0.00 0.00 0.00 4.17
2774 3367 4.307432 ACATAGTCCACGAACTTGTCTTG 58.693 43.478 0.00 0.00 0.00 3.02
2777 3370 3.673809 GTGACATAGTCCACGAACTTGTC 59.326 47.826 15.93 15.93 37.56 3.18
2785 3378 1.067565 ACAGCAGTGACATAGTCCACG 60.068 52.381 0.00 0.00 0.00 4.94
2791 3384 3.531934 TCCATGACAGCAGTGACATAG 57.468 47.619 0.00 0.00 37.01 2.23
2818 3411 6.686378 GCAGGTATATGTCCTTCAGATTCACA 60.686 42.308 0.00 0.00 32.37 3.58
3081 3674 2.340337 GCAGCCTTGCCAAAATGTAAG 58.660 47.619 0.00 0.00 44.74 2.34
3689 4285 3.953712 TGAGATGCTTTGTACTTCCGA 57.046 42.857 0.00 0.00 0.00 4.55
3761 4357 3.303135 TCGGCTCGTTCTGGTGCT 61.303 61.111 0.00 0.00 0.00 4.40
3806 4402 2.477754 GACAAGGTTAAGTCGGTTTCGG 59.522 50.000 0.00 0.00 36.95 4.30
3871 4467 1.140589 CTACTGCAGCTCCAGGACG 59.859 63.158 15.27 0.00 37.16 4.79
3872 4468 0.610687 AACTACTGCAGCTCCAGGAC 59.389 55.000 15.27 0.00 37.16 3.85
3873 4469 0.610174 CAACTACTGCAGCTCCAGGA 59.390 55.000 15.27 0.00 37.16 3.86
3874 4470 0.322975 ACAACTACTGCAGCTCCAGG 59.677 55.000 15.27 1.77 37.16 4.45
3875 4471 1.802960 CAACAACTACTGCAGCTCCAG 59.197 52.381 15.27 2.15 38.78 3.86
3876 4472 1.416030 TCAACAACTACTGCAGCTCCA 59.584 47.619 15.27 0.00 0.00 3.86
3877 4473 2.169832 TCAACAACTACTGCAGCTCC 57.830 50.000 15.27 0.00 0.00 4.70
3878 4474 2.224314 GGTTCAACAACTACTGCAGCTC 59.776 50.000 15.27 0.00 32.50 4.09
3879 4475 2.222027 GGTTCAACAACTACTGCAGCT 58.778 47.619 15.27 3.67 32.50 4.24
3880 4476 1.266989 GGGTTCAACAACTACTGCAGC 59.733 52.381 15.27 0.00 32.50 5.25
3881 4477 2.851195 AGGGTTCAACAACTACTGCAG 58.149 47.619 13.48 13.48 32.50 4.41
3882 4478 2.948979 CAAGGGTTCAACAACTACTGCA 59.051 45.455 0.00 0.00 32.50 4.41
3883 4479 2.287608 GCAAGGGTTCAACAACTACTGC 60.288 50.000 0.00 0.00 32.50 4.40
3884 4480 2.948979 TGCAAGGGTTCAACAACTACTG 59.051 45.455 0.00 0.00 32.50 2.74
3885 4481 3.290948 TGCAAGGGTTCAACAACTACT 57.709 42.857 0.00 0.00 32.50 2.57
3886 4482 5.001232 TCTATGCAAGGGTTCAACAACTAC 58.999 41.667 0.00 0.00 32.50 2.73
3887 4483 5.235850 TCTATGCAAGGGTTCAACAACTA 57.764 39.130 0.00 0.00 32.50 2.24
3888 4484 4.098914 TCTATGCAAGGGTTCAACAACT 57.901 40.909 0.00 0.00 32.50 3.16
3889 4485 4.218417 ACATCTATGCAAGGGTTCAACAAC 59.782 41.667 0.00 0.00 0.00 3.32
3890 4486 4.218200 CACATCTATGCAAGGGTTCAACAA 59.782 41.667 0.00 0.00 0.00 2.83
3891 4487 3.758023 CACATCTATGCAAGGGTTCAACA 59.242 43.478 0.00 0.00 0.00 3.33
3892 4488 4.009675 TCACATCTATGCAAGGGTTCAAC 58.990 43.478 0.00 0.00 0.00 3.18
3893 4489 4.299586 TCACATCTATGCAAGGGTTCAA 57.700 40.909 0.00 0.00 0.00 2.69
3894 4490 3.998913 TCACATCTATGCAAGGGTTCA 57.001 42.857 0.00 0.00 0.00 3.18
3895 4491 3.065925 GCTTCACATCTATGCAAGGGTTC 59.934 47.826 0.00 0.00 0.00 3.62
3896 4492 3.019564 GCTTCACATCTATGCAAGGGTT 58.980 45.455 0.00 0.00 0.00 4.11
3897 4493 2.025981 TGCTTCACATCTATGCAAGGGT 60.026 45.455 0.00 0.00 0.00 4.34
3898 4494 2.646930 TGCTTCACATCTATGCAAGGG 58.353 47.619 0.00 0.00 0.00 3.95
3909 4505 6.405508 GGAATTTGATGTCAGATGCTTCACAT 60.406 38.462 2.07 4.07 43.54 3.21
3910 4506 5.106038 GGAATTTGATGTCAGATGCTTCACA 60.106 40.000 2.07 0.00 0.00 3.58
3911 4507 5.338365 GGAATTTGATGTCAGATGCTTCAC 58.662 41.667 2.07 0.00 0.00 3.18
3912 4508 4.095334 CGGAATTTGATGTCAGATGCTTCA 59.905 41.667 2.07 0.00 0.00 3.02
3913 4509 4.595116 CGGAATTTGATGTCAGATGCTTC 58.405 43.478 0.00 0.00 0.00 3.86
3914 4510 3.181493 GCGGAATTTGATGTCAGATGCTT 60.181 43.478 0.00 0.00 0.00 3.91
3915 4511 2.357009 GCGGAATTTGATGTCAGATGCT 59.643 45.455 0.00 0.00 0.00 3.79
3916 4512 2.097954 TGCGGAATTTGATGTCAGATGC 59.902 45.455 0.00 0.00 0.00 3.91
3917 4513 3.127376 TGTGCGGAATTTGATGTCAGATG 59.873 43.478 0.00 0.00 0.00 2.90
3918 4514 3.346315 TGTGCGGAATTTGATGTCAGAT 58.654 40.909 0.00 0.00 0.00 2.90
3919 4515 2.777094 TGTGCGGAATTTGATGTCAGA 58.223 42.857 0.00 0.00 0.00 3.27
3920 4516 3.431856 CATGTGCGGAATTTGATGTCAG 58.568 45.455 0.00 0.00 0.00 3.51
3921 4517 2.164017 CCATGTGCGGAATTTGATGTCA 59.836 45.455 0.00 0.00 0.00 3.58
3922 4518 2.801063 CCATGTGCGGAATTTGATGTC 58.199 47.619 0.00 0.00 0.00 3.06
3923 4519 1.135024 GCCATGTGCGGAATTTGATGT 60.135 47.619 0.00 0.00 0.00 3.06
3924 4520 1.563111 GCCATGTGCGGAATTTGATG 58.437 50.000 0.00 0.00 0.00 3.07
3935 4531 2.004583 TACAGTAACTCGCCATGTGC 57.995 50.000 0.00 0.00 0.00 4.57
3936 4532 2.671396 GGTTACAGTAACTCGCCATGTG 59.329 50.000 20.54 0.00 38.68 3.21
3937 4533 2.565834 AGGTTACAGTAACTCGCCATGT 59.434 45.455 20.54 0.00 38.68 3.21
3938 4534 3.187700 GAGGTTACAGTAACTCGCCATG 58.812 50.000 20.54 0.00 38.68 3.66
3939 4535 2.829720 TGAGGTTACAGTAACTCGCCAT 59.170 45.455 20.54 3.34 38.68 4.40
3940 4536 2.241160 TGAGGTTACAGTAACTCGCCA 58.759 47.619 20.54 11.60 38.68 5.69
3941 4537 3.119245 TGATGAGGTTACAGTAACTCGCC 60.119 47.826 20.54 6.51 38.68 5.54
3942 4538 3.858238 GTGATGAGGTTACAGTAACTCGC 59.142 47.826 20.54 13.61 38.68 5.03
3943 4539 4.158025 AGGTGATGAGGTTACAGTAACTCG 59.842 45.833 20.54 0.00 38.68 4.18
3944 4540 5.185249 TGAGGTGATGAGGTTACAGTAACTC 59.815 44.000 20.54 15.96 38.68 3.01
3945 4541 5.084519 TGAGGTGATGAGGTTACAGTAACT 58.915 41.667 20.54 8.79 38.68 2.24
3946 4542 5.401531 TGAGGTGATGAGGTTACAGTAAC 57.598 43.478 14.30 14.30 37.94 2.50
3947 4543 5.046591 CCTTGAGGTGATGAGGTTACAGTAA 60.047 44.000 0.00 0.00 0.00 2.24
3948 4544 4.466370 CCTTGAGGTGATGAGGTTACAGTA 59.534 45.833 0.00 0.00 0.00 2.74
3949 4545 3.261897 CCTTGAGGTGATGAGGTTACAGT 59.738 47.826 0.00 0.00 0.00 3.55
3950 4546 3.515502 TCCTTGAGGTGATGAGGTTACAG 59.484 47.826 0.00 0.00 36.34 2.74
3951 4547 3.515502 CTCCTTGAGGTGATGAGGTTACA 59.484 47.826 0.00 0.00 36.34 2.41
3952 4548 3.769844 TCTCCTTGAGGTGATGAGGTTAC 59.230 47.826 0.00 0.00 33.24 2.50
3953 4549 3.769844 GTCTCCTTGAGGTGATGAGGTTA 59.230 47.826 5.22 0.00 39.55 2.85
3954 4550 2.569404 GTCTCCTTGAGGTGATGAGGTT 59.431 50.000 5.22 0.00 39.55 3.50
3955 4551 2.183679 GTCTCCTTGAGGTGATGAGGT 58.816 52.381 5.22 0.00 39.55 3.85
3956 4552 1.135915 CGTCTCCTTGAGGTGATGAGG 59.864 57.143 13.52 4.01 43.71 3.86
3957 4553 1.135915 CCGTCTCCTTGAGGTGATGAG 59.864 57.143 18.33 8.35 43.71 2.90
3958 4554 1.186200 CCGTCTCCTTGAGGTGATGA 58.814 55.000 18.33 2.99 43.71 2.92
3959 4555 0.460987 GCCGTCTCCTTGAGGTGATG 60.461 60.000 12.31 12.31 41.79 3.07
3960 4556 1.901085 GCCGTCTCCTTGAGGTGAT 59.099 57.895 5.22 0.00 39.55 3.06
3961 4557 2.636412 CGCCGTCTCCTTGAGGTGA 61.636 63.158 0.00 0.00 36.43 4.02
3962 4558 2.125912 CGCCGTCTCCTTGAGGTG 60.126 66.667 0.00 0.00 36.34 4.00
3963 4559 3.382832 CCGCCGTCTCCTTGAGGT 61.383 66.667 0.00 0.00 36.34 3.85
3964 4560 4.148825 CCCGCCGTCTCCTTGAGG 62.149 72.222 0.00 0.00 0.00 3.86
3965 4561 1.961180 ATTCCCGCCGTCTCCTTGAG 61.961 60.000 0.00 0.00 0.00 3.02
3966 4562 1.956629 GATTCCCGCCGTCTCCTTGA 61.957 60.000 0.00 0.00 0.00 3.02
3967 4563 1.521681 GATTCCCGCCGTCTCCTTG 60.522 63.158 0.00 0.00 0.00 3.61
3968 4564 0.396695 TAGATTCCCGCCGTCTCCTT 60.397 55.000 0.00 0.00 0.00 3.36
3969 4565 1.108132 GTAGATTCCCGCCGTCTCCT 61.108 60.000 0.00 0.00 0.00 3.69
3970 4566 1.363080 GTAGATTCCCGCCGTCTCC 59.637 63.158 0.00 0.00 0.00 3.71
3971 4567 1.008767 CGTAGATTCCCGCCGTCTC 60.009 63.158 0.00 0.00 0.00 3.36
3972 4568 3.117372 CGTAGATTCCCGCCGTCT 58.883 61.111 0.00 0.00 0.00 4.18
3973 4569 2.657620 GCGTAGATTCCCGCCGTC 60.658 66.667 6.98 0.00 43.96 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.