Multiple sequence alignment - TraesCS6B01G452500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G452500 chr6B 100.000 3442 0 0 889 4330 711348401 711344960 0.000000e+00 6357.0
1 TraesCS6B01G452500 chr6B 91.914 977 41 13 895 1852 711372938 711373895 0.000000e+00 1332.0
2 TraesCS6B01G452500 chr6B 92.733 922 57 6 1460 2381 589030168 589031079 0.000000e+00 1323.0
3 TraesCS6B01G452500 chr6B 91.292 712 51 7 2994 3702 711375188 711375891 0.000000e+00 961.0
4 TraesCS6B01G452500 chr6B 88.152 709 65 11 1850 2557 711373976 711374666 0.000000e+00 826.0
5 TraesCS6B01G452500 chr6B 100.000 334 0 0 1 334 711349289 711348956 6.150000e-173 617.0
6 TraesCS6B01G452500 chr6B 94.979 239 12 0 2632 2870 711374790 711375028 4.090000e-100 375.0
7 TraesCS6B01G452500 chr6B 87.500 192 16 5 4127 4312 711376454 711376643 9.430000e-52 215.0
8 TraesCS6B01G452500 chr6B 98.551 69 1 0 2874 2942 711374961 711375029 5.880000e-24 122.0
9 TraesCS6B01G452500 chr6B 92.771 83 6 0 2803 2885 711346416 711346334 2.110000e-23 121.0
10 TraesCS6B01G452500 chr6B 92.771 83 6 0 2874 2956 711346487 711346405 2.110000e-23 121.0
11 TraesCS6B01G452500 chr6B 77.295 207 40 5 82 282 54195359 54195154 9.840000e-22 115.0
12 TraesCS6B01G452500 chr6D 92.292 1998 78 31 889 2873 466272054 466270120 0.000000e+00 2767.0
13 TraesCS6B01G452500 chr6D 91.750 1697 67 29 1187 2870 466308786 466310422 0.000000e+00 2290.0
14 TraesCS6B01G452500 chr6D 92.203 808 40 7 3040 3840 466310682 466311473 0.000000e+00 1122.0
15 TraesCS6B01G452500 chr6D 86.933 551 36 14 2951 3493 466269317 466268795 1.730000e-163 586.0
16 TraesCS6B01G452500 chr6D 81.250 400 58 14 3533 3919 466268787 466268392 1.510000e-79 307.0
17 TraesCS6B01G452500 chr6D 97.273 110 3 0 4128 4237 466312227 466312336 2.060000e-43 187.0
18 TraesCS6B01G452500 chr6D 95.918 98 1 2 889 986 466308681 466308775 5.800000e-34 156.0
19 TraesCS6B01G452500 chr6D 97.143 70 2 0 2873 2942 466270191 466270122 7.610000e-23 119.0
20 TraesCS6B01G452500 chr6D 97.143 70 2 0 2873 2942 466310354 466310423 7.610000e-23 119.0
21 TraesCS6B01G452500 chr6A 91.383 1764 80 31 1120 2873 612180370 612178669 0.000000e+00 2350.0
22 TraesCS6B01G452500 chr6A 92.976 1623 70 13 889 2494 612186698 612188293 0.000000e+00 2326.0
23 TraesCS6B01G452500 chr6A 84.247 1003 91 29 2952 3919 612188888 612189858 0.000000e+00 915.0
24 TraesCS6B01G452500 chr6A 84.028 1008 87 34 2951 3919 612178341 612177369 0.000000e+00 902.0
25 TraesCS6B01G452500 chr6A 93.665 442 22 2 2430 2870 612188304 612188740 0.000000e+00 656.0
26 TraesCS6B01G452500 chr6A 96.056 355 11 2 889 1243 612180752 612180401 3.760000e-160 575.0
27 TraesCS6B01G452500 chr6A 98.571 70 1 0 2873 2942 612178740 612178671 1.630000e-24 124.0
28 TraesCS6B01G452500 chr6A 93.750 64 3 1 4250 4312 612190106 612190169 1.280000e-15 95.3
29 TraesCS6B01G452500 chr2B 93.521 926 49 7 1460 2384 706576630 706575715 0.000000e+00 1367.0
30 TraesCS6B01G452500 chr2B 93.164 512 26 5 1460 1971 743592607 743592105 0.000000e+00 743.0
31 TraesCS6B01G452500 chr2B 92.773 512 28 5 1460 1971 435737194 435737696 0.000000e+00 732.0
32 TraesCS6B01G452500 chr2B 92.578 512 29 5 1460 1971 26980984 26981486 0.000000e+00 726.0
33 TraesCS6B01G452500 chr2B 95.933 418 15 2 1963 2379 26982299 26982715 0.000000e+00 676.0
34 TraesCS6B01G452500 chr7B 92.549 510 29 5 1462 1971 186604178 186604678 0.000000e+00 723.0
35 TraesCS6B01G452500 chr7B 95.227 419 20 0 1963 2381 186605497 186605915 0.000000e+00 664.0
36 TraesCS6B01G452500 chr1B 92.383 512 30 5 1460 1971 137217448 137216946 0.000000e+00 721.0
37 TraesCS6B01G452500 chr1B 81.429 210 37 2 74 283 668475151 668474944 2.070000e-38 171.0
38 TraesCS6B01G452500 chrUn 91.992 512 32 6 1460 1971 23861605 23861103 0.000000e+00 710.0
39 TraesCS6B01G452500 chrUn 79.703 202 39 2 87 288 77135489 77135688 1.250000e-30 145.0
40 TraesCS6B01G452500 chrUn 77.895 190 36 6 69 255 23497747 23497933 3.540000e-21 113.0
41 TraesCS6B01G452500 chr5B 76.786 280 61 4 4 282 345836973 345837249 2.090000e-33 154.0
42 TraesCS6B01G452500 chr5D 83.178 107 18 0 177 283 79174182 79174288 9.910000e-17 99.0
43 TraesCS6B01G452500 chr4B 95.556 45 2 0 4060 4104 105706617 105706661 6.010000e-09 73.1
44 TraesCS6B01G452500 chr4D 96.875 32 0 1 4073 4104 72673016 72673046 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G452500 chr6B 711344960 711349289 4329 True 1804.000 6357 96.385500 1 4330 4 chr6B.!!$R2 4329
1 TraesCS6B01G452500 chr6B 589030168 589031079 911 False 1323.000 1323 92.733000 1460 2381 1 chr6B.!!$F1 921
2 TraesCS6B01G452500 chr6B 711372938 711376643 3705 False 638.500 1332 92.064667 895 4312 6 chr6B.!!$F2 3417
3 TraesCS6B01G452500 chr6D 466268392 466272054 3662 True 944.750 2767 89.404500 889 3919 4 chr6D.!!$R1 3030
4 TraesCS6B01G452500 chr6D 466308681 466312336 3655 False 774.800 2290 94.857400 889 4237 5 chr6D.!!$F1 3348
5 TraesCS6B01G452500 chr6A 612186698 612190169 3471 False 998.075 2326 91.159500 889 4312 4 chr6A.!!$F1 3423
6 TraesCS6B01G452500 chr6A 612177369 612180752 3383 True 987.750 2350 92.509500 889 3919 4 chr6A.!!$R1 3030
7 TraesCS6B01G452500 chr2B 706575715 706576630 915 True 1367.000 1367 93.521000 1460 2384 1 chr2B.!!$R1 924
8 TraesCS6B01G452500 chr2B 743592105 743592607 502 True 743.000 743 93.164000 1460 1971 1 chr2B.!!$R2 511
9 TraesCS6B01G452500 chr2B 435737194 435737696 502 False 732.000 732 92.773000 1460 1971 1 chr2B.!!$F1 511
10 TraesCS6B01G452500 chr2B 26980984 26982715 1731 False 701.000 726 94.255500 1460 2379 2 chr2B.!!$F2 919
11 TraesCS6B01G452500 chr7B 186604178 186605915 1737 False 693.500 723 93.888000 1462 2381 2 chr7B.!!$F1 919
12 TraesCS6B01G452500 chr1B 137216946 137217448 502 True 721.000 721 92.383000 1460 1971 1 chr1B.!!$R1 511
13 TraesCS6B01G452500 chrUn 23861103 23861605 502 True 710.000 710 91.992000 1460 1971 1 chrUn.!!$R1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 918 0.035152 ATCCGCTTCAGCATTCCACA 60.035 50.0 0.0 0.0 42.21 4.17 F
1761 1946 0.318441 GCTTGCACCCCTCTTTTTCC 59.682 55.0 0.0 0.0 0.00 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2833 4069 2.042464 ACAGTGACACACATCCTCACT 58.958 47.619 8.59 0.0 44.42 3.41 R
3538 5849 0.379669 GCCTCCAGATTGATGCAACG 59.620 55.000 0.00 0.0 0.00 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.670635 CTTCCTCTTCGATGGCGTG 58.329 57.895 0.00 0.00 38.98 5.34
19 20 0.807667 CTTCCTCTTCGATGGCGTGG 60.808 60.000 0.00 0.00 38.98 4.94
20 21 2.852495 TTCCTCTTCGATGGCGTGGC 62.852 60.000 0.00 0.00 38.98 5.01
41 42 4.344865 GGTGGCCGCCTTCTCCAA 62.345 66.667 28.79 0.00 0.00 3.53
42 43 2.747855 GTGGCCGCCTTCTCCAAG 60.748 66.667 11.61 0.00 0.00 3.61
43 44 3.249189 TGGCCGCCTTCTCCAAGT 61.249 61.111 11.61 0.00 0.00 3.16
44 45 2.436824 GGCCGCCTTCTCCAAGTC 60.437 66.667 0.71 0.00 0.00 3.01
45 46 2.665603 GCCGCCTTCTCCAAGTCT 59.334 61.111 0.00 0.00 0.00 3.24
46 47 1.743252 GCCGCCTTCTCCAAGTCTG 60.743 63.158 0.00 0.00 0.00 3.51
47 48 1.078848 CCGCCTTCTCCAAGTCTGG 60.079 63.158 0.00 0.00 45.08 3.86
55 56 4.709840 CCAAGTCTGGAGCCACTG 57.290 61.111 0.00 0.00 46.92 3.66
56 57 2.061220 CCAAGTCTGGAGCCACTGA 58.939 57.895 0.00 0.00 46.92 3.41
57 58 0.617413 CCAAGTCTGGAGCCACTGAT 59.383 55.000 0.00 0.00 46.92 2.90
58 59 1.004044 CCAAGTCTGGAGCCACTGATT 59.996 52.381 0.00 0.00 46.92 2.57
59 60 2.082231 CAAGTCTGGAGCCACTGATTG 58.918 52.381 0.00 0.00 0.00 2.67
60 61 0.035630 AGTCTGGAGCCACTGATTGC 60.036 55.000 0.00 0.00 0.00 3.56
61 62 1.028868 GTCTGGAGCCACTGATTGCC 61.029 60.000 0.00 0.00 0.00 4.52
62 63 1.751927 CTGGAGCCACTGATTGCCC 60.752 63.158 0.00 0.00 0.00 5.36
63 64 2.440980 GGAGCCACTGATTGCCCC 60.441 66.667 0.00 0.00 0.00 5.80
64 65 2.679716 GAGCCACTGATTGCCCCT 59.320 61.111 0.00 0.00 0.00 4.79
65 66 1.751927 GAGCCACTGATTGCCCCTG 60.752 63.158 0.00 0.00 0.00 4.45
66 67 3.455469 GCCACTGATTGCCCCTGC 61.455 66.667 0.00 0.00 38.26 4.85
67 68 2.757099 CCACTGATTGCCCCTGCC 60.757 66.667 0.00 0.00 36.33 4.85
68 69 2.757099 CACTGATTGCCCCTGCCC 60.757 66.667 0.00 0.00 36.33 5.36
69 70 4.066139 ACTGATTGCCCCTGCCCC 62.066 66.667 0.00 0.00 36.33 5.80
70 71 3.747579 CTGATTGCCCCTGCCCCT 61.748 66.667 0.00 0.00 36.33 4.79
71 72 4.064768 TGATTGCCCCTGCCCCTG 62.065 66.667 0.00 0.00 36.33 4.45
84 85 3.297620 CCCTGCGCAGTTGCCTTT 61.298 61.111 33.75 0.00 37.91 3.11
85 86 2.256461 CCTGCGCAGTTGCCTTTC 59.744 61.111 33.75 0.00 37.91 2.62
86 87 2.256461 CTGCGCAGTTGCCTTTCC 59.744 61.111 29.24 0.00 37.91 3.13
87 88 3.599792 CTGCGCAGTTGCCTTTCCG 62.600 63.158 29.24 0.00 37.91 4.30
89 90 3.357079 CGCAGTTGCCTTTCCGCT 61.357 61.111 0.00 0.00 37.91 5.52
90 91 2.908073 CGCAGTTGCCTTTCCGCTT 61.908 57.895 0.00 0.00 37.91 4.68
91 92 1.081175 GCAGTTGCCTTTCCGCTTC 60.081 57.895 0.00 0.00 34.31 3.86
92 93 1.581447 CAGTTGCCTTTCCGCTTCC 59.419 57.895 0.00 0.00 0.00 3.46
93 94 1.603739 AGTTGCCTTTCCGCTTCCC 60.604 57.895 0.00 0.00 0.00 3.97
94 95 1.603739 GTTGCCTTTCCGCTTCCCT 60.604 57.895 0.00 0.00 0.00 4.20
95 96 1.152830 TTGCCTTTCCGCTTCCCTT 59.847 52.632 0.00 0.00 0.00 3.95
96 97 0.893727 TTGCCTTTCCGCTTCCCTTC 60.894 55.000 0.00 0.00 0.00 3.46
97 98 1.002011 GCCTTTCCGCTTCCCTTCT 60.002 57.895 0.00 0.00 0.00 2.85
98 99 1.027255 GCCTTTCCGCTTCCCTTCTC 61.027 60.000 0.00 0.00 0.00 2.87
99 100 0.393132 CCTTTCCGCTTCCCTTCTCC 60.393 60.000 0.00 0.00 0.00 3.71
100 101 0.741221 CTTTCCGCTTCCCTTCTCCG 60.741 60.000 0.00 0.00 0.00 4.63
101 102 2.798148 TTTCCGCTTCCCTTCTCCGC 62.798 60.000 0.00 0.00 0.00 5.54
102 103 4.840005 CCGCTTCCCTTCTCCGCC 62.840 72.222 0.00 0.00 0.00 6.13
103 104 4.082523 CGCTTCCCTTCTCCGCCA 62.083 66.667 0.00 0.00 0.00 5.69
104 105 2.592308 GCTTCCCTTCTCCGCCAT 59.408 61.111 0.00 0.00 0.00 4.40
105 106 1.821332 GCTTCCCTTCTCCGCCATG 60.821 63.158 0.00 0.00 0.00 3.66
106 107 1.153086 CTTCCCTTCTCCGCCATGG 60.153 63.158 7.63 7.63 40.09 3.66
107 108 2.615227 CTTCCCTTCTCCGCCATGGG 62.615 65.000 15.13 3.37 38.76 4.00
108 109 4.883354 CCCTTCTCCGCCATGGGC 62.883 72.222 15.13 4.92 46.75 5.36
124 125 3.793144 GCGCCGCTCCAAACAGAG 61.793 66.667 0.00 0.00 36.92 3.35
125 126 2.048222 CGCCGCTCCAAACAGAGA 60.048 61.111 0.00 0.00 35.82 3.10
126 127 2.097038 CGCCGCTCCAAACAGAGAG 61.097 63.158 0.00 0.00 35.82 3.20
132 133 1.517242 CTCCAAACAGAGAGCACCAC 58.483 55.000 0.00 0.00 35.82 4.16
133 134 0.108585 TCCAAACAGAGAGCACCACC 59.891 55.000 0.00 0.00 0.00 4.61
134 135 0.179020 CCAAACAGAGAGCACCACCA 60.179 55.000 0.00 0.00 0.00 4.17
135 136 0.947244 CAAACAGAGAGCACCACCAC 59.053 55.000 0.00 0.00 0.00 4.16
136 137 0.179018 AAACAGAGAGCACCACCACC 60.179 55.000 0.00 0.00 0.00 4.61
137 138 2.047844 CAGAGAGCACCACCACCG 60.048 66.667 0.00 0.00 0.00 4.94
138 139 2.203640 AGAGAGCACCACCACCGA 60.204 61.111 0.00 0.00 0.00 4.69
139 140 2.048127 GAGAGCACCACCACCGAC 60.048 66.667 0.00 0.00 0.00 4.79
140 141 3.591254 GAGAGCACCACCACCGACC 62.591 68.421 0.00 0.00 0.00 4.79
141 142 4.699522 GAGCACCACCACCGACCC 62.700 72.222 0.00 0.00 0.00 4.46
150 151 4.742201 CACCGACCCAGCGTCCAG 62.742 72.222 0.00 0.00 38.36 3.86
177 178 3.833645 TCGCACCCCGAGATTCCG 61.834 66.667 0.00 0.00 41.89 4.30
178 179 4.143333 CGCACCCCGAGATTCCGT 62.143 66.667 0.00 0.00 40.02 4.69
179 180 2.202892 GCACCCCGAGATTCCGTC 60.203 66.667 0.00 0.00 0.00 4.79
180 181 2.104331 CACCCCGAGATTCCGTCG 59.896 66.667 0.00 0.00 37.17 5.12
185 186 2.412112 CGAGATTCCGTCGGACCC 59.588 66.667 15.07 8.74 33.66 4.46
186 187 2.119655 CGAGATTCCGTCGGACCCT 61.120 63.158 15.07 13.75 33.66 4.34
187 188 1.734748 GAGATTCCGTCGGACCCTC 59.265 63.158 15.07 18.28 0.00 4.30
188 189 1.000019 AGATTCCGTCGGACCCTCA 60.000 57.895 15.07 0.00 0.00 3.86
189 190 1.141234 GATTCCGTCGGACCCTCAC 59.859 63.158 15.07 0.00 0.00 3.51
190 191 2.294132 GATTCCGTCGGACCCTCACC 62.294 65.000 15.07 0.00 0.00 4.02
191 192 3.813606 TTCCGTCGGACCCTCACCA 62.814 63.158 15.07 0.00 0.00 4.17
192 193 4.065281 CCGTCGGACCCTCACCAC 62.065 72.222 4.91 0.00 0.00 4.16
193 194 4.065281 CGTCGGACCCTCACCACC 62.065 72.222 1.91 0.00 0.00 4.61
194 195 3.703127 GTCGGACCCTCACCACCC 61.703 72.222 0.00 0.00 0.00 4.61
197 198 4.995058 GGACCCTCACCACCCCCA 62.995 72.222 0.00 0.00 0.00 4.96
198 199 3.330720 GACCCTCACCACCCCCAG 61.331 72.222 0.00 0.00 0.00 4.45
201 202 4.039092 CCTCACCACCCCCAGCAG 62.039 72.222 0.00 0.00 0.00 4.24
202 203 2.930019 CTCACCACCCCCAGCAGA 60.930 66.667 0.00 0.00 0.00 4.26
203 204 2.449518 TCACCACCCCCAGCAGAA 60.450 61.111 0.00 0.00 0.00 3.02
204 205 2.067932 CTCACCACCCCCAGCAGAAA 62.068 60.000 0.00 0.00 0.00 2.52
205 206 1.152567 CACCACCCCCAGCAGAAAA 60.153 57.895 0.00 0.00 0.00 2.29
206 207 1.152546 ACCACCCCCAGCAGAAAAC 60.153 57.895 0.00 0.00 0.00 2.43
207 208 1.908299 CCACCCCCAGCAGAAAACC 60.908 63.158 0.00 0.00 0.00 3.27
208 209 1.908299 CACCCCCAGCAGAAAACCC 60.908 63.158 0.00 0.00 0.00 4.11
209 210 2.091283 ACCCCCAGCAGAAAACCCT 61.091 57.895 0.00 0.00 0.00 4.34
210 211 0.774491 ACCCCCAGCAGAAAACCCTA 60.774 55.000 0.00 0.00 0.00 3.53
211 212 0.407918 CCCCCAGCAGAAAACCCTAA 59.592 55.000 0.00 0.00 0.00 2.69
212 213 1.545841 CCCCAGCAGAAAACCCTAAC 58.454 55.000 0.00 0.00 0.00 2.34
213 214 1.545841 CCCAGCAGAAAACCCTAACC 58.454 55.000 0.00 0.00 0.00 2.85
214 215 1.545841 CCAGCAGAAAACCCTAACCC 58.454 55.000 0.00 0.00 0.00 4.11
215 216 1.075536 CCAGCAGAAAACCCTAACCCT 59.924 52.381 0.00 0.00 0.00 4.34
216 217 2.307686 CCAGCAGAAAACCCTAACCCTA 59.692 50.000 0.00 0.00 0.00 3.53
217 218 3.610911 CAGCAGAAAACCCTAACCCTAG 58.389 50.000 0.00 0.00 0.00 3.02
218 219 2.026169 AGCAGAAAACCCTAACCCTAGC 60.026 50.000 0.00 0.00 0.00 3.42
219 220 2.629051 CAGAAAACCCTAACCCTAGCG 58.371 52.381 0.00 0.00 0.00 4.26
220 221 2.027469 CAGAAAACCCTAACCCTAGCGT 60.027 50.000 0.00 0.00 0.00 5.07
221 222 2.641321 AGAAAACCCTAACCCTAGCGTT 59.359 45.455 0.00 0.00 29.16 4.84
222 223 2.484742 AAACCCTAACCCTAGCGTTG 57.515 50.000 2.95 0.00 28.68 4.10
223 224 0.035725 AACCCTAACCCTAGCGTTGC 60.036 55.000 2.95 0.00 27.32 4.17
224 225 1.196104 ACCCTAACCCTAGCGTTGCA 61.196 55.000 2.95 0.00 0.00 4.08
225 226 0.462047 CCCTAACCCTAGCGTTGCAG 60.462 60.000 2.95 0.00 0.00 4.41
226 227 1.090052 CCTAACCCTAGCGTTGCAGC 61.090 60.000 2.95 0.00 37.41 5.25
227 228 1.421410 CTAACCCTAGCGTTGCAGCG 61.421 60.000 19.37 19.37 43.00 5.18
251 252 4.812476 CCTCACGATCGCCCGCAA 62.812 66.667 16.60 0.00 0.00 4.85
252 253 3.554692 CTCACGATCGCCCGCAAC 61.555 66.667 16.60 0.00 0.00 4.17
271 272 3.202706 GCCTTAGCGCTTTCCCCG 61.203 66.667 18.68 0.00 0.00 5.73
272 273 2.267961 CCTTAGCGCTTTCCCCGT 59.732 61.111 18.68 0.00 0.00 5.28
273 274 2.106683 CCTTAGCGCTTTCCCCGTG 61.107 63.158 18.68 0.00 0.00 4.94
274 275 2.046700 TTAGCGCTTTCCCCGTGG 60.047 61.111 18.68 0.00 0.00 4.94
275 276 2.798148 CTTAGCGCTTTCCCCGTGGT 62.798 60.000 18.68 0.00 0.00 4.16
276 277 3.599285 TAGCGCTTTCCCCGTGGTG 62.599 63.158 18.68 0.00 0.00 4.17
278 279 4.323477 CGCTTTCCCCGTGGTGGA 62.323 66.667 0.00 0.00 42.00 4.02
279 280 2.114411 GCTTTCCCCGTGGTGGAA 59.886 61.111 5.14 5.14 42.00 3.53
280 281 2.265904 GCTTTCCCCGTGGTGGAAC 61.266 63.158 7.97 0.00 41.48 3.62
294 295 2.779506 GTGGAACCTCCTGTAACCTTG 58.220 52.381 0.00 0.00 37.46 3.61
295 296 1.073284 TGGAACCTCCTGTAACCTTGC 59.927 52.381 0.00 0.00 37.46 4.01
296 297 1.073284 GGAACCTCCTGTAACCTTGCA 59.927 52.381 0.00 0.00 32.53 4.08
297 298 2.152016 GAACCTCCTGTAACCTTGCAC 58.848 52.381 0.00 0.00 0.00 4.57
298 299 1.136828 ACCTCCTGTAACCTTGCACA 58.863 50.000 0.00 0.00 0.00 4.57
299 300 1.705186 ACCTCCTGTAACCTTGCACAT 59.295 47.619 0.00 0.00 0.00 3.21
300 301 2.108250 ACCTCCTGTAACCTTGCACATT 59.892 45.455 0.00 0.00 0.00 2.71
301 302 3.157087 CCTCCTGTAACCTTGCACATTT 58.843 45.455 0.00 0.00 0.00 2.32
302 303 3.191371 CCTCCTGTAACCTTGCACATTTC 59.809 47.826 0.00 0.00 0.00 2.17
303 304 3.153919 TCCTGTAACCTTGCACATTTCC 58.846 45.455 0.00 0.00 0.00 3.13
304 305 3.157087 CCTGTAACCTTGCACATTTCCT 58.843 45.455 0.00 0.00 0.00 3.36
305 306 3.191371 CCTGTAACCTTGCACATTTCCTC 59.809 47.826 0.00 0.00 0.00 3.71
306 307 3.153919 TGTAACCTTGCACATTTCCTCC 58.846 45.455 0.00 0.00 0.00 4.30
307 308 1.632589 AACCTTGCACATTTCCTCCC 58.367 50.000 0.00 0.00 0.00 4.30
308 309 0.779997 ACCTTGCACATTTCCTCCCT 59.220 50.000 0.00 0.00 0.00 4.20
309 310 1.992557 ACCTTGCACATTTCCTCCCTA 59.007 47.619 0.00 0.00 0.00 3.53
310 311 2.582636 ACCTTGCACATTTCCTCCCTAT 59.417 45.455 0.00 0.00 0.00 2.57
311 312 2.954318 CCTTGCACATTTCCTCCCTATG 59.046 50.000 0.00 0.00 0.00 2.23
312 313 3.624777 CTTGCACATTTCCTCCCTATGT 58.375 45.455 0.00 0.00 32.98 2.29
313 314 3.737559 TGCACATTTCCTCCCTATGTT 57.262 42.857 0.00 0.00 30.45 2.71
314 315 3.355378 TGCACATTTCCTCCCTATGTTG 58.645 45.455 0.00 0.00 30.45 3.33
315 316 2.689983 GCACATTTCCTCCCTATGTTGG 59.310 50.000 0.00 0.00 30.45 3.77
327 328 4.855340 CCCTATGTTGGGTTGTTAGATGT 58.145 43.478 0.00 0.00 42.25 3.06
328 329 4.640201 CCCTATGTTGGGTTGTTAGATGTG 59.360 45.833 0.00 0.00 42.25 3.21
329 330 5.253330 CCTATGTTGGGTTGTTAGATGTGT 58.747 41.667 0.00 0.00 0.00 3.72
330 331 5.123820 CCTATGTTGGGTTGTTAGATGTGTG 59.876 44.000 0.00 0.00 0.00 3.82
331 332 2.621055 TGTTGGGTTGTTAGATGTGTGC 59.379 45.455 0.00 0.00 0.00 4.57
332 333 2.621055 GTTGGGTTGTTAGATGTGTGCA 59.379 45.455 0.00 0.00 0.00 4.57
333 334 2.226330 TGGGTTGTTAGATGTGTGCAC 58.774 47.619 10.75 10.75 0.00 4.57
916 917 1.098050 AATCCGCTTCAGCATTCCAC 58.902 50.000 0.00 0.00 42.21 4.02
917 918 0.035152 ATCCGCTTCAGCATTCCACA 60.035 50.000 0.00 0.00 42.21 4.17
929 930 2.885554 GCATTCCACAAATCTCCACCCT 60.886 50.000 0.00 0.00 0.00 4.34
1005 1017 2.266372 CGCGGGTTGACCATGGTA 59.734 61.111 19.80 0.00 40.22 3.25
1084 1096 4.157120 CCCGCCGGTACCCTTCTG 62.157 72.222 6.25 0.00 0.00 3.02
1138 1304 1.305623 CTGATGCCTCCTGCCCTTT 59.694 57.895 0.00 0.00 40.16 3.11
1144 1310 2.690734 CCTCCTGCCCTTTACCCCC 61.691 68.421 0.00 0.00 0.00 5.40
1145 1311 3.012722 TCCTGCCCTTTACCCCCG 61.013 66.667 0.00 0.00 0.00 5.73
1264 1430 4.057428 GCCACTGACGCGTCCTCT 62.057 66.667 34.34 15.12 0.00 3.69
1417 1584 5.105392 TGCTTATTCTTGCCAATCCGATTTT 60.105 36.000 0.00 0.00 0.00 1.82
1550 1733 1.109920 AGCTCTATGTCGTGCCGGAT 61.110 55.000 5.05 0.00 0.00 4.18
1614 1798 3.532896 TCAGGGTGAGATTGTTCGC 57.467 52.632 0.00 0.00 0.00 4.70
1615 1799 0.389817 TCAGGGTGAGATTGTTCGCG 60.390 55.000 0.00 0.00 0.00 5.87
1616 1800 1.079127 AGGGTGAGATTGTTCGCGG 60.079 57.895 6.13 0.00 0.00 6.46
1617 1801 1.375523 GGGTGAGATTGTTCGCGGT 60.376 57.895 6.13 0.00 0.00 5.68
1618 1802 1.635663 GGGTGAGATTGTTCGCGGTG 61.636 60.000 6.13 0.00 0.00 4.94
1619 1803 0.949105 GGTGAGATTGTTCGCGGTGT 60.949 55.000 6.13 0.00 0.00 4.16
1620 1804 0.438830 GTGAGATTGTTCGCGGTGTC 59.561 55.000 6.13 0.00 0.00 3.67
1625 1809 2.702751 ATTGTTCGCGGTGTCGTGGA 62.703 55.000 6.13 0.00 45.85 4.02
1639 1823 2.076100 TCGTGGAACTGCAATGACATC 58.924 47.619 0.00 0.00 31.75 3.06
1651 1836 4.097714 GCAATGACATCGTGTTGTATTGG 58.902 43.478 15.90 0.00 0.00 3.16
1761 1946 0.318441 GCTTGCACCCCTCTTTTTCC 59.682 55.000 0.00 0.00 0.00 3.13
1873 2141 9.326413 GTGTACTTGTTATTGTTGCCTATATCT 57.674 33.333 0.00 0.00 0.00 1.98
1889 2157 6.580254 GCCTATATCTATCAGTGAGGGAGAGT 60.580 46.154 0.00 0.00 0.00 3.24
1895 2163 7.353414 TCTATCAGTGAGGGAGAGTAATTTG 57.647 40.000 0.00 0.00 0.00 2.32
2105 3201 5.692115 TTGTGAACTCCAAGCATCCTATA 57.308 39.130 0.00 0.00 0.00 1.31
2181 3278 2.371841 TGCTGCCAGAAGTCTAGGAAAA 59.628 45.455 0.00 0.00 0.00 2.29
2209 3306 6.411630 CGGATCTCGTTTGGTGTTATTAAA 57.588 37.500 0.00 0.00 0.00 1.52
2395 3504 5.070180 AGACATATCTCTGCTGCACTAATGT 59.930 40.000 0.00 4.76 0.00 2.71
2422 3531 3.386768 TGATATTCGAGGCCTAACAGC 57.613 47.619 4.42 0.00 0.00 4.40
2423 3532 2.288213 TGATATTCGAGGCCTAACAGCG 60.288 50.000 4.42 4.45 0.00 5.18
2424 3533 1.108776 TATTCGAGGCCTAACAGCGT 58.891 50.000 4.42 0.00 0.00 5.07
2425 3534 1.108776 ATTCGAGGCCTAACAGCGTA 58.891 50.000 4.42 0.00 0.00 4.42
2426 3535 0.454600 TTCGAGGCCTAACAGCGTAG 59.545 55.000 4.42 0.00 0.00 3.51
2427 3536 0.679002 TCGAGGCCTAACAGCGTAGT 60.679 55.000 4.42 0.00 0.00 2.73
2428 3537 1.019673 CGAGGCCTAACAGCGTAGTA 58.980 55.000 4.42 0.00 0.00 1.82
2689 3925 6.441274 CAGCTAAAAAGATGTTGCAAGAGAA 58.559 36.000 0.00 0.00 0.00 2.87
2801 4037 7.448748 AAAATTGCGAAGAGGTTTGTATACT 57.551 32.000 4.17 0.00 0.00 2.12
2802 4038 6.663944 AATTGCGAAGAGGTTTGTATACTC 57.336 37.500 4.17 0.00 0.00 2.59
2803 4039 5.401531 TTGCGAAGAGGTTTGTATACTCT 57.598 39.130 4.17 0.00 43.03 3.24
2809 4045 6.847421 AAGAGGTTTGTATACTCTTACGGT 57.153 37.500 4.17 0.00 46.52 4.83
2810 4046 6.448207 AGAGGTTTGTATACTCTTACGGTC 57.552 41.667 4.17 0.00 38.36 4.79
2811 4047 5.948162 AGAGGTTTGTATACTCTTACGGTCA 59.052 40.000 4.17 0.00 38.36 4.02
2812 4048 6.606395 AGAGGTTTGTATACTCTTACGGTCAT 59.394 38.462 4.17 0.00 38.36 3.06
2813 4049 7.123847 AGAGGTTTGTATACTCTTACGGTCATT 59.876 37.037 4.17 0.00 38.36 2.57
2814 4050 7.618137 AGGTTTGTATACTCTTACGGTCATTT 58.382 34.615 4.17 0.00 0.00 2.32
2815 4051 7.763071 AGGTTTGTATACTCTTACGGTCATTTC 59.237 37.037 4.17 0.00 0.00 2.17
2816 4052 7.010830 GGTTTGTATACTCTTACGGTCATTTCC 59.989 40.741 4.17 0.00 0.00 3.13
2817 4053 7.414222 TTGTATACTCTTACGGTCATTTCCT 57.586 36.000 4.17 0.00 0.00 3.36
2818 4054 7.414222 TGTATACTCTTACGGTCATTTCCTT 57.586 36.000 4.17 0.00 0.00 3.36
2819 4055 8.523915 TGTATACTCTTACGGTCATTTCCTTA 57.476 34.615 4.17 0.00 0.00 2.69
2820 4056 8.627403 TGTATACTCTTACGGTCATTTCCTTAG 58.373 37.037 4.17 0.00 0.00 2.18
2821 4057 5.997384 ACTCTTACGGTCATTTCCTTAGT 57.003 39.130 0.00 0.00 0.00 2.24
2822 4058 6.356186 ACTCTTACGGTCATTTCCTTAGTT 57.644 37.500 0.00 0.00 0.00 2.24
2823 4059 6.766429 ACTCTTACGGTCATTTCCTTAGTTT 58.234 36.000 0.00 0.00 0.00 2.66
2824 4060 7.222161 ACTCTTACGGTCATTTCCTTAGTTTT 58.778 34.615 0.00 0.00 0.00 2.43
2825 4061 8.370182 ACTCTTACGGTCATTTCCTTAGTTTTA 58.630 33.333 0.00 0.00 0.00 1.52
2826 4062 9.379791 CTCTTACGGTCATTTCCTTAGTTTTAT 57.620 33.333 0.00 0.00 0.00 1.40
2827 4063 9.729281 TCTTACGGTCATTTCCTTAGTTTTATT 57.271 29.630 0.00 0.00 0.00 1.40
2831 4067 9.074576 ACGGTCATTTCCTTAGTTTTATTTTCT 57.925 29.630 0.00 0.00 0.00 2.52
2832 4068 9.908152 CGGTCATTTCCTTAGTTTTATTTTCTT 57.092 29.630 0.00 0.00 0.00 2.52
2845 4081 9.574516 AGTTTTATTTTCTTAGTGAGGATGTGT 57.425 29.630 0.00 0.00 0.00 3.72
2846 4082 9.612620 GTTTTATTTTCTTAGTGAGGATGTGTG 57.387 33.333 0.00 0.00 0.00 3.82
2847 4083 8.918202 TTTATTTTCTTAGTGAGGATGTGTGT 57.082 30.769 0.00 0.00 0.00 3.72
2848 4084 8.547967 TTATTTTCTTAGTGAGGATGTGTGTC 57.452 34.615 0.00 0.00 0.00 3.67
2849 4085 5.545063 TTTCTTAGTGAGGATGTGTGTCA 57.455 39.130 0.00 0.00 0.00 3.58
2850 4086 4.521130 TCTTAGTGAGGATGTGTGTCAC 57.479 45.455 0.00 0.00 40.82 3.67
2853 4089 2.533266 GTGAGGATGTGTGTCACTGT 57.467 50.000 4.27 0.00 38.06 3.55
2854 4090 2.838736 GTGAGGATGTGTGTCACTGTT 58.161 47.619 4.27 0.00 38.06 3.16
2855 4091 3.990092 GTGAGGATGTGTGTCACTGTTA 58.010 45.455 4.27 0.00 38.06 2.41
2856 4092 3.741344 GTGAGGATGTGTGTCACTGTTAC 59.259 47.826 4.27 0.00 38.06 2.50
2857 4093 3.386402 TGAGGATGTGTGTCACTGTTACA 59.614 43.478 4.27 0.32 35.11 2.41
2858 4094 4.040339 TGAGGATGTGTGTCACTGTTACAT 59.960 41.667 4.27 5.50 35.11 2.29
2859 4095 4.318332 AGGATGTGTGTCACTGTTACATG 58.682 43.478 10.47 0.00 35.11 3.21
2860 4096 4.040339 AGGATGTGTGTCACTGTTACATGA 59.960 41.667 10.47 0.00 35.11 3.07
2861 4097 4.754618 GGATGTGTGTCACTGTTACATGAA 59.245 41.667 10.47 0.00 35.11 2.57
2862 4098 5.238432 GGATGTGTGTCACTGTTACATGAAA 59.762 40.000 10.47 0.00 35.11 2.69
2863 4099 6.072508 GGATGTGTGTCACTGTTACATGAAAT 60.073 38.462 10.47 0.00 35.11 2.17
2864 4100 7.119116 GGATGTGTGTCACTGTTACATGAAATA 59.881 37.037 10.47 0.00 35.11 1.40
2865 4101 7.977789 TGTGTGTCACTGTTACATGAAATAT 57.022 32.000 0.00 0.00 35.11 1.28
2866 4102 8.389779 TGTGTGTCACTGTTACATGAAATATT 57.610 30.769 0.00 0.00 35.11 1.28
2867 4103 8.845227 TGTGTGTCACTGTTACATGAAATATTT 58.155 29.630 0.00 0.00 35.11 1.40
3000 5218 1.156736 GCCTGCGTAACAATCTGTGT 58.843 50.000 0.00 0.00 44.64 3.72
3014 5232 6.339730 ACAATCTGTGTTTCTGCAAATTGAA 58.660 32.000 0.00 0.00 37.01 2.69
3028 5246 4.452114 GCAAATTGAAGTCCCATGGAAAAC 59.548 41.667 15.22 8.55 31.38 2.43
3079 5345 6.195244 GCTATTATGTTGTTGAAATGCAGTCG 59.805 38.462 0.00 0.00 0.00 4.18
3218 5488 3.037549 TGAAAATGGAGGCAAACCAACT 58.962 40.909 0.00 0.00 40.93 3.16
3352 5622 0.034380 TAGCTGACCGAGTAGGCTGT 60.034 55.000 0.00 0.00 46.52 4.40
3379 5653 0.038251 GTGCTGTTGCCCTTTAAGCC 60.038 55.000 0.00 0.00 38.71 4.35
3430 5704 4.348168 AGTCCTCCATATATGTGTTGGGTC 59.652 45.833 11.73 4.57 0.00 4.46
3513 5823 4.464069 ACAGAGGAGCTATGAAACAGAC 57.536 45.455 0.00 0.00 0.00 3.51
3538 5849 1.541588 GTGGGTCTGTTTCCTTCATGC 59.458 52.381 0.00 0.00 0.00 4.06
3565 5876 3.845781 TCAATCTGGAGGCTTCATACC 57.154 47.619 0.00 0.00 0.00 2.73
3611 5922 2.803956 CAAATTGCAGGAGCCACTTTTG 59.196 45.455 0.00 0.00 41.13 2.44
3617 5928 3.181480 TGCAGGAGCCACTTTTGTTTTAC 60.181 43.478 0.00 0.00 41.13 2.01
3622 5933 4.261867 GGAGCCACTTTTGTTTTACGGATT 60.262 41.667 0.00 0.00 0.00 3.01
3661 5973 0.099968 CCGCCTGCATGTTCATCTTG 59.900 55.000 0.00 0.00 0.00 3.02
3710 6029 4.683781 GTGCTCTTCTGCTATACTATGCAC 59.316 45.833 0.00 0.00 39.79 4.57
3773 6116 9.066892 AGTGCATTTTCTTATGTTCACTTTAGA 57.933 29.630 0.00 0.00 29.92 2.10
3776 6119 9.334693 GCATTTTCTTATGTTCACTTTAGACTG 57.665 33.333 0.00 0.00 0.00 3.51
3783 6126 9.130312 CTTATGTTCACTTTAGACTGAGTACAC 57.870 37.037 0.00 0.00 0.00 2.90
3815 6159 9.914131 CGTGGAATATACTTTCATCAATCTAGA 57.086 33.333 0.00 0.00 0.00 2.43
3848 6193 6.456447 CAATTTACTTGTGTGAATTGCTGG 57.544 37.500 11.46 0.00 45.94 4.85
3888 6588 3.790091 TGCTGCAGTATCTTCATCAGTC 58.210 45.455 16.64 0.00 0.00 3.51
3894 6594 4.619973 CAGTATCTTCATCAGTCTCTGCC 58.380 47.826 0.00 0.00 0.00 4.85
3913 6613 2.032290 GCCTCTGTTCAACCGTTTACAC 60.032 50.000 0.00 0.00 0.00 2.90
3955 6937 1.801178 GAGAAACTTCAACTGCCTCGG 59.199 52.381 0.00 0.00 0.00 4.63
3974 6956 4.097361 GGACCTTCCCTGGCCGAC 62.097 72.222 0.00 0.00 0.00 4.79
3975 6957 4.097361 GACCTTCCCTGGCCGACC 62.097 72.222 0.00 0.00 0.00 4.79
4033 7028 8.656806 TGGACCAGTCTTTAAAAGAGAAATAGA 58.343 33.333 0.00 0.00 38.41 1.98
4034 7029 8.937884 GGACCAGTCTTTAAAAGAGAAATAGAC 58.062 37.037 0.00 0.00 38.41 2.59
4051 7046 9.825972 AGAAATAGACAAAAATTACATCACGTG 57.174 29.630 9.94 9.94 0.00 4.49
4052 7047 9.820229 GAAATAGACAAAAATTACATCACGTGA 57.180 29.630 22.48 22.48 0.00 4.35
4055 7050 7.908193 AGACAAAAATTACATCACGTGAAAC 57.092 32.000 24.13 0.00 0.00 2.78
4056 7051 7.476667 AGACAAAAATTACATCACGTGAAACA 58.523 30.769 24.13 7.30 35.74 2.83
4057 7052 7.971168 AGACAAAAATTACATCACGTGAAACAA 59.029 29.630 24.13 15.91 35.74 2.83
4058 7053 8.641499 ACAAAAATTACATCACGTGAAACAAT 57.359 26.923 24.13 17.38 35.74 2.71
4059 7054 9.092876 ACAAAAATTACATCACGTGAAACAATT 57.907 25.926 24.13 21.59 35.74 2.32
4060 7055 9.913451 CAAAAATTACATCACGTGAAACAATTT 57.087 25.926 24.13 25.20 35.74 1.82
4070 7065 5.799542 CGTGAAACAATTTTTACGGGAAG 57.200 39.130 6.55 0.00 45.90 3.46
4071 7066 5.512473 CGTGAAACAATTTTTACGGGAAGA 58.488 37.500 6.55 0.00 45.90 2.87
4072 7067 6.146898 CGTGAAACAATTTTTACGGGAAGAT 58.853 36.000 6.55 0.00 45.90 2.40
4073 7068 6.639279 CGTGAAACAATTTTTACGGGAAGATT 59.361 34.615 6.55 0.00 45.90 2.40
4074 7069 7.168469 CGTGAAACAATTTTTACGGGAAGATTT 59.832 33.333 6.55 0.00 45.90 2.17
4075 7070 8.272866 GTGAAACAATTTTTACGGGAAGATTTG 58.727 33.333 0.00 0.00 36.32 2.32
4076 7071 7.982354 TGAAACAATTTTTACGGGAAGATTTGT 59.018 29.630 0.00 0.00 30.93 2.83
4077 7072 9.465985 GAAACAATTTTTACGGGAAGATTTGTA 57.534 29.630 4.73 0.00 30.05 2.41
4078 7073 8.806177 AACAATTTTTACGGGAAGATTTGTAC 57.194 30.769 4.73 0.00 30.05 2.90
4079 7074 7.942990 ACAATTTTTACGGGAAGATTTGTACA 58.057 30.769 0.00 0.00 29.02 2.90
4080 7075 8.079809 ACAATTTTTACGGGAAGATTTGTACAG 58.920 33.333 0.00 0.00 29.02 2.74
4081 7076 6.563222 TTTTTACGGGAAGATTTGTACAGG 57.437 37.500 0.00 0.00 0.00 4.00
4082 7077 5.486735 TTTACGGGAAGATTTGTACAGGA 57.513 39.130 0.00 0.00 0.00 3.86
4083 7078 3.611766 ACGGGAAGATTTGTACAGGAG 57.388 47.619 0.00 0.00 0.00 3.69
4084 7079 2.280628 CGGGAAGATTTGTACAGGAGC 58.719 52.381 0.00 0.00 0.00 4.70
4085 7080 2.093447 CGGGAAGATTTGTACAGGAGCT 60.093 50.000 0.00 0.00 0.00 4.09
4086 7081 3.132289 CGGGAAGATTTGTACAGGAGCTA 59.868 47.826 0.00 0.00 0.00 3.32
4087 7082 4.202264 CGGGAAGATTTGTACAGGAGCTAT 60.202 45.833 0.00 0.00 0.00 2.97
4088 7083 5.685075 CGGGAAGATTTGTACAGGAGCTATT 60.685 44.000 0.00 0.00 0.00 1.73
4089 7084 5.529060 GGGAAGATTTGTACAGGAGCTATTG 59.471 44.000 0.00 0.00 0.00 1.90
4090 7085 5.529060 GGAAGATTTGTACAGGAGCTATTGG 59.471 44.000 0.00 0.00 0.00 3.16
4091 7086 5.957771 AGATTTGTACAGGAGCTATTGGA 57.042 39.130 0.00 0.00 0.00 3.53
4092 7087 5.923204 AGATTTGTACAGGAGCTATTGGAG 58.077 41.667 0.00 0.00 0.00 3.86
4093 7088 5.426833 AGATTTGTACAGGAGCTATTGGAGT 59.573 40.000 0.00 0.00 0.00 3.85
4094 7089 5.499004 TTTGTACAGGAGCTATTGGAGTT 57.501 39.130 0.00 0.00 0.00 3.01
4095 7090 4.471904 TGTACAGGAGCTATTGGAGTTG 57.528 45.455 0.00 0.00 0.00 3.16
4096 7091 2.409948 ACAGGAGCTATTGGAGTTGC 57.590 50.000 0.00 0.00 0.00 4.17
4097 7092 1.912043 ACAGGAGCTATTGGAGTTGCT 59.088 47.619 0.00 0.00 37.56 3.91
4110 7105 4.973168 TGGAGTTGCTCTAACACTTGATT 58.027 39.130 0.00 0.00 41.88 2.57
4112 7107 6.530120 TGGAGTTGCTCTAACACTTGATTAA 58.470 36.000 0.00 0.00 41.88 1.40
4115 7116 7.041372 GGAGTTGCTCTAACACTTGATTAAACA 60.041 37.037 0.00 0.00 41.88 2.83
4164 7173 4.448891 GCGATTTTTCTTGCTTTGCTTTC 58.551 39.130 0.00 0.00 0.00 2.62
4215 7225 2.365293 ACATCCAAGTTTCCAAACCAGC 59.635 45.455 0.00 0.00 39.71 4.85
4242 7252 9.817809 ACATGAGACGAACTAATTAACACATAT 57.182 29.630 0.00 0.00 0.00 1.78
4312 7408 4.796312 GGCGATTAAAACATAACACGCAAT 59.204 37.500 0.00 0.00 45.17 3.56
4313 7409 5.966503 GGCGATTAAAACATAACACGCAATA 59.033 36.000 0.00 0.00 45.17 1.90
4314 7410 6.140108 GGCGATTAAAACATAACACGCAATAG 59.860 38.462 0.00 0.00 45.17 1.73
4315 7411 6.343924 GCGATTAAAACATAACACGCAATAGC 60.344 38.462 0.00 0.00 43.35 2.97
4316 7412 6.684979 CGATTAAAACATAACACGCAATAGCA 59.315 34.615 0.00 0.00 42.27 3.49
4317 7413 7.217258 CGATTAAAACATAACACGCAATAGCAA 59.783 33.333 0.00 0.00 42.27 3.91
4318 7414 7.555639 TTAAAACATAACACGCAATAGCAAC 57.444 32.000 0.00 0.00 42.27 4.17
4319 7415 5.371115 AAACATAACACGCAATAGCAACT 57.629 34.783 0.00 0.00 42.27 3.16
4320 7416 6.489127 AAACATAACACGCAATAGCAACTA 57.511 33.333 0.00 0.00 42.27 2.24
4321 7417 6.489127 AACATAACACGCAATAGCAACTAA 57.511 33.333 0.00 0.00 42.27 2.24
4322 7418 6.489127 ACATAACACGCAATAGCAACTAAA 57.511 33.333 0.00 0.00 42.27 1.85
4323 7419 6.904498 ACATAACACGCAATAGCAACTAAAA 58.096 32.000 0.00 0.00 42.27 1.52
4324 7420 7.364200 ACATAACACGCAATAGCAACTAAAAA 58.636 30.769 0.00 0.00 42.27 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.807667 CCACGCCATCGAAGAGGAAG 60.808 60.000 6.15 2.28 43.16 3.46
1 2 1.218047 CCACGCCATCGAAGAGGAA 59.782 57.895 6.15 0.00 43.16 3.36
2 3 2.892640 CCACGCCATCGAAGAGGA 59.107 61.111 6.15 0.00 43.16 3.71
3 4 2.892425 GCCACGCCATCGAAGAGG 60.892 66.667 0.00 0.00 43.63 3.69
24 25 4.344865 TTGGAGAAGGCGGCCACC 62.345 66.667 23.09 17.85 0.00 4.61
25 26 2.747855 CTTGGAGAAGGCGGCCAC 60.748 66.667 23.09 14.62 0.00 5.01
26 27 3.249189 ACTTGGAGAAGGCGGCCA 61.249 61.111 23.09 0.00 32.95 5.36
27 28 2.436824 GACTTGGAGAAGGCGGCC 60.437 66.667 12.11 12.11 32.95 6.13
28 29 1.743252 CAGACTTGGAGAAGGCGGC 60.743 63.158 0.00 0.00 42.81 6.53
29 30 4.606071 CAGACTTGGAGAAGGCGG 57.394 61.111 0.00 0.00 42.81 6.13
38 39 0.617413 ATCAGTGGCTCCAGACTTGG 59.383 55.000 0.00 0.00 46.49 3.61
39 40 2.082231 CAATCAGTGGCTCCAGACTTG 58.918 52.381 0.00 0.00 0.00 3.16
40 41 1.612726 GCAATCAGTGGCTCCAGACTT 60.613 52.381 0.00 0.00 0.00 3.01
41 42 0.035630 GCAATCAGTGGCTCCAGACT 60.036 55.000 0.00 0.00 0.00 3.24
42 43 2.475666 GCAATCAGTGGCTCCAGAC 58.524 57.895 0.00 0.00 0.00 3.51
50 51 2.757099 GGCAGGGGCAATCAGTGG 60.757 66.667 0.00 0.00 43.71 4.00
51 52 2.757099 GGGCAGGGGCAATCAGTG 60.757 66.667 0.00 0.00 43.71 3.66
52 53 4.066139 GGGGCAGGGGCAATCAGT 62.066 66.667 0.00 0.00 43.71 3.41
53 54 3.747579 AGGGGCAGGGGCAATCAG 61.748 66.667 0.00 0.00 43.71 2.90
54 55 4.064768 CAGGGGCAGGGGCAATCA 62.065 66.667 0.00 0.00 43.71 2.57
76 77 1.179174 AAGGGAAGCGGAAAGGCAAC 61.179 55.000 0.00 0.00 34.64 4.17
77 78 0.893727 GAAGGGAAGCGGAAAGGCAA 60.894 55.000 0.00 0.00 34.64 4.52
78 79 1.303317 GAAGGGAAGCGGAAAGGCA 60.303 57.895 0.00 0.00 34.64 4.75
79 80 1.002011 AGAAGGGAAGCGGAAAGGC 60.002 57.895 0.00 0.00 0.00 4.35
80 81 0.393132 GGAGAAGGGAAGCGGAAAGG 60.393 60.000 0.00 0.00 0.00 3.11
81 82 0.741221 CGGAGAAGGGAAGCGGAAAG 60.741 60.000 0.00 0.00 0.00 2.62
82 83 1.295423 CGGAGAAGGGAAGCGGAAA 59.705 57.895 0.00 0.00 0.00 3.13
83 84 2.978824 CGGAGAAGGGAAGCGGAA 59.021 61.111 0.00 0.00 0.00 4.30
84 85 3.771160 GCGGAGAAGGGAAGCGGA 61.771 66.667 0.00 0.00 0.00 5.54
85 86 4.840005 GGCGGAGAAGGGAAGCGG 62.840 72.222 0.00 0.00 0.00 5.52
86 87 3.391665 ATGGCGGAGAAGGGAAGCG 62.392 63.158 0.00 0.00 0.00 4.68
87 88 1.821332 CATGGCGGAGAAGGGAAGC 60.821 63.158 0.00 0.00 0.00 3.86
88 89 1.153086 CCATGGCGGAGAAGGGAAG 60.153 63.158 0.00 0.00 36.56 3.46
89 90 2.679342 CCCATGGCGGAGAAGGGAA 61.679 63.158 6.09 0.00 42.25 3.97
90 91 3.089874 CCCATGGCGGAGAAGGGA 61.090 66.667 6.09 0.00 42.25 4.20
91 92 4.883354 GCCCATGGCGGAGAAGGG 62.883 72.222 6.09 0.00 39.62 3.95
107 108 3.793144 CTCTGTTTGGAGCGGCGC 61.793 66.667 26.86 26.86 0.00 6.53
108 109 2.048222 TCTCTGTTTGGAGCGGCG 60.048 61.111 0.51 0.51 33.70 6.46
109 110 2.394563 GCTCTCTGTTTGGAGCGGC 61.395 63.158 0.00 0.00 44.01 6.53
110 111 3.882025 GCTCTCTGTTTGGAGCGG 58.118 61.111 0.00 0.00 44.01 5.52
113 114 1.517242 GTGGTGCTCTCTGTTTGGAG 58.483 55.000 0.00 0.00 34.88 3.86
114 115 0.108585 GGTGGTGCTCTCTGTTTGGA 59.891 55.000 0.00 0.00 0.00 3.53
115 116 0.179020 TGGTGGTGCTCTCTGTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
116 117 0.947244 GTGGTGGTGCTCTCTGTTTG 59.053 55.000 0.00 0.00 0.00 2.93
117 118 0.179018 GGTGGTGGTGCTCTCTGTTT 60.179 55.000 0.00 0.00 0.00 2.83
118 119 1.451936 GGTGGTGGTGCTCTCTGTT 59.548 57.895 0.00 0.00 0.00 3.16
119 120 2.872388 CGGTGGTGGTGCTCTCTGT 61.872 63.158 0.00 0.00 0.00 3.41
120 121 2.047844 CGGTGGTGGTGCTCTCTG 60.048 66.667 0.00 0.00 0.00 3.35
121 122 2.203640 TCGGTGGTGGTGCTCTCT 60.204 61.111 0.00 0.00 0.00 3.10
122 123 2.048127 GTCGGTGGTGGTGCTCTC 60.048 66.667 0.00 0.00 0.00 3.20
123 124 3.626924 GGTCGGTGGTGGTGCTCT 61.627 66.667 0.00 0.00 0.00 4.09
124 125 4.699522 GGGTCGGTGGTGGTGCTC 62.700 72.222 0.00 0.00 0.00 4.26
137 138 3.775654 CTCCCTGGACGCTGGGTC 61.776 72.222 15.72 15.72 43.74 4.46
157 158 4.143333 AATCTCGGGGTGCGACGG 62.143 66.667 0.00 0.00 0.00 4.79
158 159 2.582498 GAATCTCGGGGTGCGACG 60.582 66.667 0.00 0.00 0.00 5.12
159 160 2.202892 GGAATCTCGGGGTGCGAC 60.203 66.667 0.00 0.00 0.00 5.19
160 161 3.833645 CGGAATCTCGGGGTGCGA 61.834 66.667 0.00 0.00 0.00 5.10
161 162 4.143333 ACGGAATCTCGGGGTGCG 62.143 66.667 0.00 0.00 0.00 5.34
162 163 2.202892 GACGGAATCTCGGGGTGC 60.203 66.667 0.00 0.00 0.00 5.01
163 164 2.104331 CGACGGAATCTCGGGGTG 59.896 66.667 0.00 0.00 0.00 4.61
164 165 3.145551 CCGACGGAATCTCGGGGT 61.146 66.667 8.64 0.00 45.90 4.95
168 169 2.061182 GAGGGTCCGACGGAATCTCG 62.061 65.000 20.26 0.00 31.38 4.04
169 170 1.035932 TGAGGGTCCGACGGAATCTC 61.036 60.000 27.48 27.48 35.25 2.75
170 171 1.000019 TGAGGGTCCGACGGAATCT 60.000 57.895 20.26 18.31 31.38 2.40
171 172 1.141234 GTGAGGGTCCGACGGAATC 59.859 63.158 20.26 16.92 31.38 2.52
172 173 2.356780 GGTGAGGGTCCGACGGAAT 61.357 63.158 20.26 7.76 31.38 3.01
173 174 2.993264 GGTGAGGGTCCGACGGAA 60.993 66.667 20.26 0.00 31.38 4.30
174 175 4.289101 TGGTGAGGGTCCGACGGA 62.289 66.667 13.88 13.88 0.00 4.69
175 176 4.065281 GTGGTGAGGGTCCGACGG 62.065 72.222 7.84 7.84 0.00 4.79
176 177 4.065281 GGTGGTGAGGGTCCGACG 62.065 72.222 0.00 0.00 0.00 5.12
177 178 3.703127 GGGTGGTGAGGGTCCGAC 61.703 72.222 0.00 0.00 0.00 4.79
180 181 4.995058 TGGGGGTGGTGAGGGTCC 62.995 72.222 0.00 0.00 0.00 4.46
181 182 3.330720 CTGGGGGTGGTGAGGGTC 61.331 72.222 0.00 0.00 0.00 4.46
184 185 4.039092 CTGCTGGGGGTGGTGAGG 62.039 72.222 0.00 0.00 0.00 3.86
185 186 2.067932 TTTCTGCTGGGGGTGGTGAG 62.068 60.000 0.00 0.00 0.00 3.51
186 187 1.650242 TTTTCTGCTGGGGGTGGTGA 61.650 55.000 0.00 0.00 0.00 4.02
187 188 1.152567 TTTTCTGCTGGGGGTGGTG 60.153 57.895 0.00 0.00 0.00 4.17
188 189 1.152546 GTTTTCTGCTGGGGGTGGT 60.153 57.895 0.00 0.00 0.00 4.16
189 190 1.908299 GGTTTTCTGCTGGGGGTGG 60.908 63.158 0.00 0.00 0.00 4.61
190 191 1.908299 GGGTTTTCTGCTGGGGGTG 60.908 63.158 0.00 0.00 0.00 4.61
191 192 0.774491 TAGGGTTTTCTGCTGGGGGT 60.774 55.000 0.00 0.00 0.00 4.95
192 193 0.407918 TTAGGGTTTTCTGCTGGGGG 59.592 55.000 0.00 0.00 0.00 5.40
193 194 1.545841 GTTAGGGTTTTCTGCTGGGG 58.454 55.000 0.00 0.00 0.00 4.96
194 195 1.545841 GGTTAGGGTTTTCTGCTGGG 58.454 55.000 0.00 0.00 0.00 4.45
195 196 1.075536 AGGGTTAGGGTTTTCTGCTGG 59.924 52.381 0.00 0.00 0.00 4.85
196 197 2.586648 AGGGTTAGGGTTTTCTGCTG 57.413 50.000 0.00 0.00 0.00 4.41
197 198 2.026169 GCTAGGGTTAGGGTTTTCTGCT 60.026 50.000 0.00 0.00 0.00 4.24
198 199 2.366533 GCTAGGGTTAGGGTTTTCTGC 58.633 52.381 0.00 0.00 0.00 4.26
199 200 2.629051 CGCTAGGGTTAGGGTTTTCTG 58.371 52.381 0.00 0.00 35.67 3.02
206 207 0.462047 CTGCAACGCTAGGGTTAGGG 60.462 60.000 23.14 13.27 43.45 3.53
207 208 1.090052 GCTGCAACGCTAGGGTTAGG 61.090 60.000 23.14 13.93 0.00 2.69
208 209 1.421410 CGCTGCAACGCTAGGGTTAG 61.421 60.000 23.14 18.57 0.00 2.34
209 210 1.447140 CGCTGCAACGCTAGGGTTA 60.447 57.895 23.14 9.57 0.00 2.85
210 211 2.742372 CGCTGCAACGCTAGGGTT 60.742 61.111 18.71 18.71 0.00 4.11
234 235 4.812476 TTGCGGGCGATCGTGAGG 62.812 66.667 17.81 5.17 0.00 3.86
235 236 3.554692 GTTGCGGGCGATCGTGAG 61.555 66.667 17.81 9.06 0.00 3.51
254 255 3.202706 CGGGGAAAGCGCTAAGGC 61.203 66.667 12.05 0.00 0.00 4.35
255 256 2.106683 CACGGGGAAAGCGCTAAGG 61.107 63.158 12.05 0.00 0.00 2.69
256 257 2.106683 CCACGGGGAAAGCGCTAAG 61.107 63.158 12.05 0.90 35.59 2.18
257 258 2.046700 CCACGGGGAAAGCGCTAA 60.047 61.111 12.05 0.00 35.59 3.09
258 259 3.315949 ACCACGGGGAAAGCGCTA 61.316 61.111 12.96 0.00 38.05 4.26
261 262 3.835790 TTCCACCACGGGGAAAGCG 62.836 63.158 12.96 0.00 41.30 4.68
262 263 2.114411 TTCCACCACGGGGAAAGC 59.886 61.111 12.96 0.00 41.30 3.51
263 264 1.602605 GGTTCCACCACGGGGAAAG 60.603 63.158 12.96 0.00 45.47 2.62
264 265 2.059345 GAGGTTCCACCACGGGGAAA 62.059 60.000 12.96 0.00 45.47 3.13
265 266 2.448931 AGGTTCCACCACGGGGAA 60.449 61.111 12.96 2.93 41.95 3.97
266 267 2.926242 GAGGTTCCACCACGGGGA 60.926 66.667 12.96 0.00 41.95 4.81
267 268 4.029809 GGAGGTTCCACCACGGGG 62.030 72.222 0.00 0.00 41.95 5.73
268 269 2.928396 AGGAGGTTCCACCACGGG 60.928 66.667 7.94 0.00 41.95 5.28
269 270 1.189524 TACAGGAGGTTCCACCACGG 61.190 60.000 7.94 0.41 41.95 4.94
270 271 0.682852 TTACAGGAGGTTCCACCACG 59.317 55.000 7.94 1.59 41.95 4.94
271 272 1.271217 GGTTACAGGAGGTTCCACCAC 60.271 57.143 7.94 0.00 41.95 4.16
272 273 1.061546 GGTTACAGGAGGTTCCACCA 58.938 55.000 7.94 0.00 41.95 4.17
273 274 1.359168 AGGTTACAGGAGGTTCCACC 58.641 55.000 0.00 0.00 39.61 4.61
274 275 2.779506 CAAGGTTACAGGAGGTTCCAC 58.220 52.381 0.00 0.00 39.61 4.02
275 276 1.073284 GCAAGGTTACAGGAGGTTCCA 59.927 52.381 0.00 0.00 39.61 3.53
276 277 1.073284 TGCAAGGTTACAGGAGGTTCC 59.927 52.381 0.00 0.00 36.58 3.62
277 278 2.152016 GTGCAAGGTTACAGGAGGTTC 58.848 52.381 0.00 0.00 0.00 3.62
278 279 1.493022 TGTGCAAGGTTACAGGAGGTT 59.507 47.619 0.00 0.00 0.00 3.50
279 280 1.136828 TGTGCAAGGTTACAGGAGGT 58.863 50.000 0.00 0.00 0.00 3.85
280 281 2.496899 ATGTGCAAGGTTACAGGAGG 57.503 50.000 0.00 0.00 0.00 4.30
281 282 3.191371 GGAAATGTGCAAGGTTACAGGAG 59.809 47.826 0.00 0.00 0.00 3.69
282 283 3.153919 GGAAATGTGCAAGGTTACAGGA 58.846 45.455 0.00 0.00 0.00 3.86
283 284 3.157087 AGGAAATGTGCAAGGTTACAGG 58.843 45.455 0.00 0.00 0.00 4.00
284 285 3.191371 GGAGGAAATGTGCAAGGTTACAG 59.809 47.826 0.00 0.00 0.00 2.74
285 286 3.153919 GGAGGAAATGTGCAAGGTTACA 58.846 45.455 0.00 0.00 0.00 2.41
286 287 2.492088 GGGAGGAAATGTGCAAGGTTAC 59.508 50.000 0.00 0.00 0.00 2.50
287 288 2.378547 AGGGAGGAAATGTGCAAGGTTA 59.621 45.455 0.00 0.00 0.00 2.85
288 289 1.147817 AGGGAGGAAATGTGCAAGGTT 59.852 47.619 0.00 0.00 0.00 3.50
289 290 0.779997 AGGGAGGAAATGTGCAAGGT 59.220 50.000 0.00 0.00 0.00 3.50
290 291 2.806945 TAGGGAGGAAATGTGCAAGG 57.193 50.000 0.00 0.00 0.00 3.61
291 292 3.624777 ACATAGGGAGGAAATGTGCAAG 58.375 45.455 0.00 0.00 32.74 4.01
292 293 3.737559 ACATAGGGAGGAAATGTGCAA 57.262 42.857 0.00 0.00 32.74 4.08
293 294 3.355378 CAACATAGGGAGGAAATGTGCA 58.645 45.455 0.00 0.00 34.20 4.57
294 295 2.689983 CCAACATAGGGAGGAAATGTGC 59.310 50.000 0.00 0.00 34.20 4.57
306 307 5.123820 CACACATCTAACAACCCAACATAGG 59.876 44.000 0.00 0.00 0.00 2.57
307 308 5.391950 GCACACATCTAACAACCCAACATAG 60.392 44.000 0.00 0.00 0.00 2.23
308 309 4.457603 GCACACATCTAACAACCCAACATA 59.542 41.667 0.00 0.00 0.00 2.29
309 310 3.255642 GCACACATCTAACAACCCAACAT 59.744 43.478 0.00 0.00 0.00 2.71
310 311 2.621055 GCACACATCTAACAACCCAACA 59.379 45.455 0.00 0.00 0.00 3.33
311 312 2.621055 TGCACACATCTAACAACCCAAC 59.379 45.455 0.00 0.00 0.00 3.77
312 313 2.621055 GTGCACACATCTAACAACCCAA 59.379 45.455 13.17 0.00 0.00 4.12
313 314 2.226330 GTGCACACATCTAACAACCCA 58.774 47.619 13.17 0.00 0.00 4.51
314 315 2.989422 GTGCACACATCTAACAACCC 57.011 50.000 13.17 0.00 0.00 4.11
916 917 0.462759 GGCGAGAGGGTGGAGATTTG 60.463 60.000 0.00 0.00 0.00 2.32
917 918 1.908483 GGCGAGAGGGTGGAGATTT 59.092 57.895 0.00 0.00 0.00 2.17
996 1008 2.418976 GCGGAAGTTCTTTACCATGGTC 59.581 50.000 23.76 5.68 0.00 4.02
1005 1017 1.264288 CTTCGCTTGCGGAAGTTCTTT 59.736 47.619 18.40 0.00 36.88 2.52
1084 1096 4.168291 CAAGAGAGGGGGAGCGGC 62.168 72.222 0.00 0.00 0.00 6.53
1247 1413 4.057428 AGAGGACGCGTCAGTGGC 62.057 66.667 37.26 21.27 34.44 5.01
1389 1555 3.317430 GGATTGGCAAGAATAAGCAGAGG 59.683 47.826 5.96 0.00 0.00 3.69
1417 1584 2.303022 CCCAGGCTTAAGTCAGTTCTGA 59.697 50.000 10.23 0.00 0.00 3.27
1614 1798 1.227999 ATTGCAGTTCCACGACACCG 61.228 55.000 0.00 0.00 42.50 4.94
1615 1799 0.238289 CATTGCAGTTCCACGACACC 59.762 55.000 0.00 0.00 0.00 4.16
1616 1800 1.069906 GTCATTGCAGTTCCACGACAC 60.070 52.381 0.00 0.00 0.00 3.67
1617 1801 1.225855 GTCATTGCAGTTCCACGACA 58.774 50.000 0.00 0.00 0.00 4.35
1618 1802 1.225855 TGTCATTGCAGTTCCACGAC 58.774 50.000 0.00 0.00 0.00 4.34
1619 1803 2.076100 GATGTCATTGCAGTTCCACGA 58.924 47.619 0.00 0.00 0.00 4.35
1620 1804 1.201954 CGATGTCATTGCAGTTCCACG 60.202 52.381 0.00 0.00 0.00 4.94
1625 1809 2.618241 ACAACACGATGTCATTGCAGTT 59.382 40.909 0.00 3.29 0.00 3.16
1639 1823 3.347958 ACAAGCAACCAATACAACACG 57.652 42.857 0.00 0.00 0.00 4.49
1651 1836 3.402628 TCTTCCTCACCTACAAGCAAC 57.597 47.619 0.00 0.00 0.00 4.17
1797 1982 6.183361 CCTTCCCCTCTCAATCCAACATAATA 60.183 42.308 0.00 0.00 0.00 0.98
1873 2141 5.663106 AGCAAATTACTCTCCCTCACTGATA 59.337 40.000 0.00 0.00 0.00 2.15
1895 2163 9.677567 CTTATCTAGAGATTTCTGAACAGTAGC 57.322 37.037 0.00 0.00 36.05 3.58
2083 3179 2.957402 AGGATGCTTGGAGTTCACAA 57.043 45.000 0.00 0.00 0.00 3.33
2163 3260 4.640771 ATGTTTTCCTAGACTTCTGGCA 57.359 40.909 0.00 0.00 0.00 4.92
2209 3306 5.142639 ACAGGGATAAAATGCATAGCACAT 58.857 37.500 0.00 0.00 43.04 3.21
2395 3504 7.276658 TGTTAGGCCTCGAATATCAACAATAA 58.723 34.615 9.68 0.00 0.00 1.40
2422 3531 7.035840 ACCTAGACATTAACCACATACTACG 57.964 40.000 0.00 0.00 0.00 3.51
2465 3652 9.273016 TGAAAATCCTATATCCACGAGAAATTC 57.727 33.333 0.00 0.00 0.00 2.17
2689 3925 4.479786 TTTGTTTTACCAGCAAGCCTTT 57.520 36.364 0.00 0.00 0.00 3.11
2801 4037 9.729281 AATAAAACTAAGGAAATGACCGTAAGA 57.271 29.630 0.00 0.00 43.02 2.10
2805 4041 9.074576 AGAAAATAAAACTAAGGAAATGACCGT 57.925 29.630 0.00 0.00 34.73 4.83
2806 4042 9.908152 AAGAAAATAAAACTAAGGAAATGACCG 57.092 29.630 0.00 0.00 34.73 4.79
2819 4055 9.574516 ACACATCCTCACTAAGAAAATAAAACT 57.425 29.630 0.00 0.00 0.00 2.66
2820 4056 9.612620 CACACATCCTCACTAAGAAAATAAAAC 57.387 33.333 0.00 0.00 0.00 2.43
2821 4057 9.349713 ACACACATCCTCACTAAGAAAATAAAA 57.650 29.630 0.00 0.00 0.00 1.52
2822 4058 8.918202 ACACACATCCTCACTAAGAAAATAAA 57.082 30.769 0.00 0.00 0.00 1.40
2823 4059 8.154203 TGACACACATCCTCACTAAGAAAATAA 58.846 33.333 0.00 0.00 0.00 1.40
2824 4060 7.602644 GTGACACACATCCTCACTAAGAAAATA 59.397 37.037 0.00 0.00 34.08 1.40
2825 4061 6.428159 GTGACACACATCCTCACTAAGAAAAT 59.572 38.462 0.00 0.00 34.08 1.82
2826 4062 5.758296 GTGACACACATCCTCACTAAGAAAA 59.242 40.000 0.00 0.00 34.08 2.29
2827 4063 5.070446 AGTGACACACATCCTCACTAAGAAA 59.930 40.000 8.59 0.00 42.28 2.52
2828 4064 4.588951 AGTGACACACATCCTCACTAAGAA 59.411 41.667 8.59 0.00 42.28 2.52
2829 4065 4.021981 CAGTGACACACATCCTCACTAAGA 60.022 45.833 8.59 0.00 42.21 2.10
2830 4066 4.240888 CAGTGACACACATCCTCACTAAG 58.759 47.826 8.59 0.00 42.21 2.18
2831 4067 3.641436 ACAGTGACACACATCCTCACTAA 59.359 43.478 8.59 0.00 42.21 2.24
2832 4068 3.230976 ACAGTGACACACATCCTCACTA 58.769 45.455 8.59 0.00 42.21 2.74
2833 4069 2.042464 ACAGTGACACACATCCTCACT 58.958 47.619 8.59 0.00 44.42 3.41
2834 4070 2.533266 ACAGTGACACACATCCTCAC 57.467 50.000 8.59 0.00 36.74 3.51
2835 4071 3.386402 TGTAACAGTGACACACATCCTCA 59.614 43.478 8.59 0.00 36.74 3.86
2836 4072 3.990092 TGTAACAGTGACACACATCCTC 58.010 45.455 8.59 0.00 36.74 3.71
2837 4073 4.040339 TCATGTAACAGTGACACACATCCT 59.960 41.667 8.59 0.00 36.74 3.24
2838 4074 4.314961 TCATGTAACAGTGACACACATCC 58.685 43.478 8.59 0.00 36.74 3.51
2839 4075 5.922739 TTCATGTAACAGTGACACACATC 57.077 39.130 8.59 0.00 36.74 3.06
2840 4076 6.882610 ATTTCATGTAACAGTGACACACAT 57.117 33.333 8.59 5.93 36.74 3.21
2841 4077 7.977789 ATATTTCATGTAACAGTGACACACA 57.022 32.000 8.59 3.60 36.74 3.72
2862 4098 9.646522 AGGAAATGACCTTAAGCACATAAATAT 57.353 29.630 11.20 0.00 36.86 1.28
2863 4099 9.474313 AAGGAAATGACCTTAAGCACATAAATA 57.526 29.630 11.20 0.00 46.81 1.40
2864 4100 7.961326 AGGAAATGACCTTAAGCACATAAAT 57.039 32.000 11.20 4.12 36.86 1.40
2865 4101 7.775053 AAGGAAATGACCTTAAGCACATAAA 57.225 32.000 11.20 0.00 46.81 1.40
2942 4178 8.816640 AGTGCAATTTTTAATGACCTTAAGTG 57.183 30.769 0.97 0.00 31.12 3.16
2943 4179 9.908152 GTAGTGCAATTTTTAATGACCTTAAGT 57.092 29.630 0.97 0.00 31.12 2.24
2946 4182 8.519526 CCAGTAGTGCAATTTTTAATGACCTTA 58.480 33.333 0.00 0.00 0.00 2.69
2947 4183 7.015195 ACCAGTAGTGCAATTTTTAATGACCTT 59.985 33.333 0.00 0.00 0.00 3.50
2948 4184 6.493458 ACCAGTAGTGCAATTTTTAATGACCT 59.507 34.615 0.00 0.00 0.00 3.85
2950 4186 9.685828 TTAACCAGTAGTGCAATTTTTAATGAC 57.314 29.630 0.00 0.00 0.00 3.06
2961 4520 4.586841 AGGCAAATTTAACCAGTAGTGCAA 59.413 37.500 11.03 0.00 32.41 4.08
2979 4538 1.535028 CACAGATTGTTACGCAGGCAA 59.465 47.619 0.00 0.00 0.00 4.52
3000 5218 4.262549 CCATGGGACTTCAATTTGCAGAAA 60.263 41.667 2.85 0.00 0.00 2.52
3014 5232 2.308866 CCACTAGGTTTTCCATGGGACT 59.691 50.000 13.02 0.00 43.73 3.85
3052 5270 6.808212 ACTGCATTTCAACAACATAATAGCAC 59.192 34.615 0.00 0.00 0.00 4.40
3083 5349 9.806203 AACAAATATGTGACATCAATAACATGG 57.194 29.630 0.00 0.00 40.46 3.66
3218 5488 4.163458 GGACCACCTGGATTGTTACTATCA 59.837 45.833 0.00 0.00 38.94 2.15
3379 5653 3.728718 GTGTTGCCACTAACATGTTTTCG 59.271 43.478 17.78 8.39 42.02 3.46
3406 5680 4.103153 ACCCAACACATATATGGAGGACTG 59.897 45.833 16.96 7.34 36.27 3.51
3430 5704 3.062639 GCGTGATAGGTGTTCACTGAATG 59.937 47.826 2.98 0.00 41.05 2.67
3481 5766 4.258457 AGCTCCTCTGTATAACAGGAGT 57.742 45.455 18.03 7.76 45.94 3.85
3513 5823 2.938956 AGGAAACAGACCCACTCAAG 57.061 50.000 0.00 0.00 0.00 3.02
3538 5849 0.379669 GCCTCCAGATTGATGCAACG 59.620 55.000 0.00 0.00 0.00 4.10
3565 5876 1.409412 CACTGTGAAGTCCTCGAACG 58.591 55.000 0.32 0.00 0.00 3.95
3611 5922 4.665897 GCGAGAGTCACAAATCCGTAAAAC 60.666 45.833 0.00 0.00 0.00 2.43
3617 5928 1.428448 TTGCGAGAGTCACAAATCCG 58.572 50.000 0.00 0.00 0.00 4.18
3622 5933 2.548057 GGACAATTTGCGAGAGTCACAA 59.452 45.455 0.00 0.00 0.00 3.33
3661 5973 4.369182 TGAGAACAGAGTTTCTTCGAACC 58.631 43.478 0.00 0.00 35.90 3.62
3710 6029 1.022982 TTGGCTCAAGATGCTGCTCG 61.023 55.000 0.00 0.00 0.00 5.03
3715 6034 1.305623 CCCCTTGGCTCAAGATGCT 59.694 57.895 14.33 0.00 43.42 3.79
3773 6116 1.540363 CCACGCCAAAGTGTACTCAGT 60.540 52.381 0.00 0.00 40.33 3.41
3776 6119 1.873698 TTCCACGCCAAAGTGTACTC 58.126 50.000 0.00 0.00 40.33 2.59
3780 6123 4.216411 AGTATATTCCACGCCAAAGTGT 57.784 40.909 0.00 0.00 40.33 3.55
3783 6126 5.811399 TGAAAGTATATTCCACGCCAAAG 57.189 39.130 0.00 0.00 0.00 2.77
3815 6159 2.884639 ACAAGTAAATTGCGCTTCCAGT 59.115 40.909 9.73 0.00 43.15 4.00
3888 6588 0.034059 ACGGTTGAACAGAGGCAGAG 59.966 55.000 1.76 0.00 0.00 3.35
3894 6594 5.293569 AGAAAGTGTAAACGGTTGAACAGAG 59.706 40.000 1.76 0.00 0.00 3.35
3932 6635 4.307432 CGAGGCAGTTGAAGTTTCTCTTA 58.693 43.478 0.00 0.00 36.40 2.10
3934 6637 2.548920 CCGAGGCAGTTGAAGTTTCTCT 60.549 50.000 0.00 0.00 0.00 3.10
3935 6638 1.801178 CCGAGGCAGTTGAAGTTTCTC 59.199 52.381 0.00 0.00 0.00 2.87
3937 6640 0.238553 GCCGAGGCAGTTGAAGTTTC 59.761 55.000 9.58 0.00 41.49 2.78
3938 6641 1.507141 CGCCGAGGCAGTTGAAGTTT 61.507 55.000 15.03 0.00 42.06 2.66
3939 6642 1.961277 CGCCGAGGCAGTTGAAGTT 60.961 57.895 15.03 0.00 42.06 2.66
3940 6643 2.357517 CGCCGAGGCAGTTGAAGT 60.358 61.111 15.03 0.00 42.06 3.01
3941 6644 3.121030 CCGCCGAGGCAGTTGAAG 61.121 66.667 15.03 0.00 42.06 3.02
3942 6645 3.621805 TCCGCCGAGGCAGTTGAA 61.622 61.111 15.03 0.00 42.06 2.69
3943 6646 4.373116 GTCCGCCGAGGCAGTTGA 62.373 66.667 15.03 2.02 42.06 3.18
3972 6954 4.173036 TGAGAAAATGGAAAATGCGGTC 57.827 40.909 0.00 0.00 0.00 4.79
3973 6955 4.599047 TTGAGAAAATGGAAAATGCGGT 57.401 36.364 0.00 0.00 0.00 5.68
3974 6956 5.638657 TCATTTGAGAAAATGGAAAATGCGG 59.361 36.000 10.40 0.00 39.84 5.69
3975 6957 6.145858 TGTCATTTGAGAAAATGGAAAATGCG 59.854 34.615 10.40 0.00 39.84 4.73
3980 6962 7.111247 ACACTGTCATTTGAGAAAATGGAAA 57.889 32.000 10.40 0.00 39.84 3.13
4005 7000 5.888982 TCTCTTTTAAAGACTGGTCCACT 57.111 39.130 2.94 0.00 33.12 4.00
4033 7028 8.641499 ATTGTTTCACGTGATGTAATTTTTGT 57.359 26.923 20.80 0.00 0.00 2.83
4034 7029 9.913451 AAATTGTTTCACGTGATGTAATTTTTG 57.087 25.926 25.34 0.00 0.00 2.44
4039 7034 8.897809 CGTAAAAATTGTTTCACGTGATGTAAT 58.102 29.630 20.80 15.87 0.00 1.89
4040 7035 7.376336 CCGTAAAAATTGTTTCACGTGATGTAA 59.624 33.333 20.80 14.32 32.41 2.41
4043 7038 5.116377 CCCGTAAAAATTGTTTCACGTGATG 59.884 40.000 20.80 0.00 32.41 3.07
4045 7040 4.334759 TCCCGTAAAAATTGTTTCACGTGA 59.665 37.500 15.76 15.76 32.41 4.35
4046 7041 4.599047 TCCCGTAAAAATTGTTTCACGTG 58.401 39.130 9.94 9.94 32.41 4.49
4048 7043 5.512473 TCTTCCCGTAAAAATTGTTTCACG 58.488 37.500 0.00 0.00 33.42 4.35
4049 7044 7.940178 AATCTTCCCGTAAAAATTGTTTCAC 57.060 32.000 0.00 0.00 0.00 3.18
4050 7045 7.982354 ACAAATCTTCCCGTAAAAATTGTTTCA 59.018 29.630 0.00 0.00 0.00 2.69
4051 7046 8.360325 ACAAATCTTCCCGTAAAAATTGTTTC 57.640 30.769 0.00 0.00 0.00 2.78
4052 7047 9.251792 GTACAAATCTTCCCGTAAAAATTGTTT 57.748 29.630 0.00 0.00 0.00 2.83
4053 7048 8.414778 TGTACAAATCTTCCCGTAAAAATTGTT 58.585 29.630 0.00 0.00 0.00 2.83
4054 7049 7.942990 TGTACAAATCTTCCCGTAAAAATTGT 58.057 30.769 0.00 0.00 0.00 2.71
4055 7050 7.540745 CCTGTACAAATCTTCCCGTAAAAATTG 59.459 37.037 0.00 0.00 0.00 2.32
4056 7051 7.449086 TCCTGTACAAATCTTCCCGTAAAAATT 59.551 33.333 0.00 0.00 0.00 1.82
4057 7052 6.943718 TCCTGTACAAATCTTCCCGTAAAAAT 59.056 34.615 0.00 0.00 0.00 1.82
4058 7053 6.297582 TCCTGTACAAATCTTCCCGTAAAAA 58.702 36.000 0.00 0.00 0.00 1.94
4059 7054 5.867330 TCCTGTACAAATCTTCCCGTAAAA 58.133 37.500 0.00 0.00 0.00 1.52
4060 7055 5.484715 CTCCTGTACAAATCTTCCCGTAAA 58.515 41.667 0.00 0.00 0.00 2.01
4061 7056 4.622220 GCTCCTGTACAAATCTTCCCGTAA 60.622 45.833 0.00 0.00 0.00 3.18
4062 7057 3.118884 GCTCCTGTACAAATCTTCCCGTA 60.119 47.826 0.00 0.00 0.00 4.02
4063 7058 2.354805 GCTCCTGTACAAATCTTCCCGT 60.355 50.000 0.00 0.00 0.00 5.28
4064 7059 2.093447 AGCTCCTGTACAAATCTTCCCG 60.093 50.000 0.00 0.00 0.00 5.14
4065 7060 3.636153 AGCTCCTGTACAAATCTTCCC 57.364 47.619 0.00 0.00 0.00 3.97
4066 7061 5.529060 CCAATAGCTCCTGTACAAATCTTCC 59.471 44.000 0.00 0.00 0.00 3.46
4067 7062 6.349300 TCCAATAGCTCCTGTACAAATCTTC 58.651 40.000 0.00 0.00 0.00 2.87
4068 7063 6.069963 ACTCCAATAGCTCCTGTACAAATCTT 60.070 38.462 0.00 0.00 0.00 2.40
4069 7064 5.426833 ACTCCAATAGCTCCTGTACAAATCT 59.573 40.000 0.00 0.00 0.00 2.40
4070 7065 5.675538 ACTCCAATAGCTCCTGTACAAATC 58.324 41.667 0.00 0.00 0.00 2.17
4071 7066 5.700402 ACTCCAATAGCTCCTGTACAAAT 57.300 39.130 0.00 0.00 0.00 2.32
4072 7067 5.245531 CAACTCCAATAGCTCCTGTACAAA 58.754 41.667 0.00 0.00 0.00 2.83
4073 7068 4.832248 CAACTCCAATAGCTCCTGTACAA 58.168 43.478 0.00 0.00 0.00 2.41
4074 7069 3.369471 GCAACTCCAATAGCTCCTGTACA 60.369 47.826 0.00 0.00 0.00 2.90
4075 7070 3.118592 AGCAACTCCAATAGCTCCTGTAC 60.119 47.826 0.00 0.00 30.05 2.90
4076 7071 3.107601 AGCAACTCCAATAGCTCCTGTA 58.892 45.455 0.00 0.00 30.05 2.74
4077 7072 1.912043 AGCAACTCCAATAGCTCCTGT 59.088 47.619 0.00 0.00 30.05 4.00
4078 7073 2.559440 GAGCAACTCCAATAGCTCCTG 58.441 52.381 0.00 0.00 45.79 3.86
4079 7074 2.998316 GAGCAACTCCAATAGCTCCT 57.002 50.000 0.00 0.00 45.79 3.69
4082 7077 4.223923 AGTGTTAGAGCAACTCCAATAGCT 59.776 41.667 0.00 0.00 40.60 3.32
4083 7078 4.508662 AGTGTTAGAGCAACTCCAATAGC 58.491 43.478 0.00 0.00 38.05 2.97
4084 7079 6.166279 TCAAGTGTTAGAGCAACTCCAATAG 58.834 40.000 0.00 0.00 38.05 1.73
4085 7080 6.109156 TCAAGTGTTAGAGCAACTCCAATA 57.891 37.500 0.00 0.00 38.05 1.90
4086 7081 4.973168 TCAAGTGTTAGAGCAACTCCAAT 58.027 39.130 0.00 0.00 38.05 3.16
4087 7082 4.415881 TCAAGTGTTAGAGCAACTCCAA 57.584 40.909 0.00 0.00 38.05 3.53
4088 7083 4.623932 ATCAAGTGTTAGAGCAACTCCA 57.376 40.909 0.00 0.00 38.05 3.86
4089 7084 7.041372 TGTTTAATCAAGTGTTAGAGCAACTCC 60.041 37.037 0.00 0.00 38.05 3.85
4090 7085 7.861630 TGTTTAATCAAGTGTTAGAGCAACTC 58.138 34.615 0.00 0.00 38.05 3.01
4091 7086 7.801716 TGTTTAATCAAGTGTTAGAGCAACT 57.198 32.000 0.00 0.00 38.05 3.16
4092 7087 8.342634 TCTTGTTTAATCAAGTGTTAGAGCAAC 58.657 33.333 20.47 0.00 43.44 4.17
4093 7088 8.445275 TCTTGTTTAATCAAGTGTTAGAGCAA 57.555 30.769 20.47 1.21 43.44 3.91
4094 7089 7.715249 ACTCTTGTTTAATCAAGTGTTAGAGCA 59.285 33.333 20.47 4.27 44.30 4.26
4095 7090 8.089115 ACTCTTGTTTAATCAAGTGTTAGAGC 57.911 34.615 20.47 0.00 44.30 4.09
4110 7105 7.013274 AGCTGACTGCAAATTTACTCTTGTTTA 59.987 33.333 7.11 0.00 45.94 2.01
4112 7107 5.300286 AGCTGACTGCAAATTTACTCTTGTT 59.700 36.000 7.11 0.00 45.94 2.83
4115 7116 6.211515 CAAAGCTGACTGCAAATTTACTCTT 58.788 36.000 7.11 0.00 45.94 2.85
4124 7125 1.359833 CGGCAAAGCTGACTGCAAA 59.640 52.632 15.31 0.00 45.94 3.68
4175 7184 7.648142 TGGATGTTTTTAAGCTGACACTTTAG 58.352 34.615 0.00 0.00 0.00 1.85
4215 7225 7.346208 TGTGTTAATTAGTTCGTCTCATGTG 57.654 36.000 0.00 0.00 0.00 3.21
4258 7349 8.408043 TCATAAAATGAGTTCCTTGTTCACAT 57.592 30.769 0.00 0.00 33.59 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.