Multiple sequence alignment - TraesCS6B01G452200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G452200 chr6B 100.000 3348 0 0 1 3348 711237556 711234209 0.000000e+00 6183.0
1 TraesCS6B01G452200 chr6B 95.483 1727 63 5 726 2441 710658565 710656843 0.000000e+00 2743.0
2 TraesCS6B01G452200 chr6B 86.720 1619 204 7 726 2340 710201925 710200314 0.000000e+00 1788.0
3 TraesCS6B01G452200 chr6B 97.701 261 3 3 1 259 711755744 711756003 2.370000e-121 446.0
4 TraesCS6B01G452200 chr6B 79.500 400 42 22 2673 3052 710654505 710654126 7.170000e-62 248.0
5 TraesCS6B01G452200 chr1D 85.515 1719 213 26 726 2428 52681858 52683556 0.000000e+00 1762.0
6 TraesCS6B01G452200 chr6D 93.608 1142 66 4 726 1867 466130778 466129644 0.000000e+00 1698.0
7 TraesCS6B01G452200 chr6D 84.494 1651 214 26 726 2367 462839944 462841561 0.000000e+00 1592.0
8 TraesCS6B01G452200 chr6D 86.207 754 60 25 2467 3214 466066897 466066182 0.000000e+00 776.0
9 TraesCS6B01G452200 chr6D 88.000 225 12 8 2229 2441 466067173 466066952 5.550000e-63 252.0
10 TraesCS6B01G452200 chr6D 94.012 167 9 1 563 729 466130992 466130827 5.550000e-63 252.0
11 TraesCS6B01G452200 chr6A 84.790 1716 219 27 726 2420 609566203 609564509 0.000000e+00 1685.0
12 TraesCS6B01G452200 chr6A 94.283 1102 62 1 726 1827 612125359 612124259 0.000000e+00 1685.0
13 TraesCS6B01G452200 chr6A 88.036 1003 105 13 1390 2389 611867649 611868639 0.000000e+00 1173.0
14 TraesCS6B01G452200 chr6A 91.061 660 32 6 1782 2441 612123500 612122868 0.000000e+00 867.0
15 TraesCS6B01G452200 chr6A 88.707 549 59 1 1786 2334 612124260 612123715 0.000000e+00 667.0
16 TraesCS6B01G452200 chr6A 93.060 317 10 5 2467 2778 612122811 612122502 1.420000e-123 453.0
17 TraesCS6B01G452200 chr6A 82.063 446 38 26 2763 3201 612121636 612121226 3.200000e-90 342.0
18 TraesCS6B01G452200 chr6A 83.267 251 23 7 2467 2701 611868811 611869058 2.620000e-51 213.0
19 TraesCS6B01G452200 chr6A 89.759 166 6 7 566 729 612125564 612125408 5.660000e-48 202.0
20 TraesCS6B01G452200 chr1A 85.751 1558 187 27 886 2428 52481899 52483436 0.000000e+00 1615.0
21 TraesCS6B01G452200 chr4B 80.013 1566 260 35 726 2262 17489016 17490557 0.000000e+00 1109.0
22 TraesCS6B01G452200 chr1B 82.278 948 128 27 1494 2428 84159304 84160224 0.000000e+00 784.0
23 TraesCS6B01G452200 chr1B 84.967 153 8 8 410 548 633727997 633728148 1.250000e-29 141.0
24 TraesCS6B01G452200 chr7A 92.143 140 9 2 410 548 650019239 650019377 2.640000e-46 196.0
25 TraesCS6B01G452200 chr5B 92.143 140 9 2 410 548 429033278 429033140 2.640000e-46 196.0
26 TraesCS6B01G452200 chr5B 86.395 147 6 7 410 543 432877591 432877446 7.480000e-32 148.0
27 TraesCS6B01G452200 chr5B 100.000 38 0 0 142 179 100040002 100039965 1.670000e-08 71.3
28 TraesCS6B01G452200 chr2D 89.041 146 8 6 410 548 33934676 33934532 1.230000e-39 174.0
29 TraesCS6B01G452200 chr2D 89.041 146 8 6 410 548 630271153 630271009 1.230000e-39 174.0
30 TraesCS6B01G452200 chr2D 88.276 145 10 5 410 548 272800799 272800942 2.070000e-37 167.0
31 TraesCS6B01G452200 chrUn 88.276 145 10 5 410 548 327662445 327662588 2.070000e-37 167.0
32 TraesCS6B01G452200 chr5D 90.756 119 8 1 20 135 24616029 24615911 4.470000e-34 156.0
33 TraesCS6B01G452200 chr5D 84.314 153 9 5 410 548 432291853 432292004 5.830000e-28 135.0
34 TraesCS6B01G452200 chr4D 86.275 153 6 3 410 548 245649550 245649399 5.790000e-33 152.0
35 TraesCS6B01G452200 chr5A 85.621 153 7 5 410 548 442271246 442271095 2.690000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G452200 chr6B 711234209 711237556 3347 True 6183.000000 6183 100.000000 1 3348 1 chr6B.!!$R2 3347
1 TraesCS6B01G452200 chr6B 710200314 710201925 1611 True 1788.000000 1788 86.720000 726 2340 1 chr6B.!!$R1 1614
2 TraesCS6B01G452200 chr6B 710654126 710658565 4439 True 1495.500000 2743 87.491500 726 3052 2 chr6B.!!$R3 2326
3 TraesCS6B01G452200 chr1D 52681858 52683556 1698 False 1762.000000 1762 85.515000 726 2428 1 chr1D.!!$F1 1702
4 TraesCS6B01G452200 chr6D 462839944 462841561 1617 False 1592.000000 1592 84.494000 726 2367 1 chr6D.!!$F1 1641
5 TraesCS6B01G452200 chr6D 466129644 466130992 1348 True 975.000000 1698 93.810000 563 1867 2 chr6D.!!$R2 1304
6 TraesCS6B01G452200 chr6D 466066182 466067173 991 True 514.000000 776 87.103500 2229 3214 2 chr6D.!!$R1 985
7 TraesCS6B01G452200 chr6A 609564509 609566203 1694 True 1685.000000 1685 84.790000 726 2420 1 chr6A.!!$R1 1694
8 TraesCS6B01G452200 chr6A 612121226 612125564 4338 True 702.666667 1685 89.822167 566 3201 6 chr6A.!!$R2 2635
9 TraesCS6B01G452200 chr6A 611867649 611869058 1409 False 693.000000 1173 85.651500 1390 2701 2 chr6A.!!$F1 1311
10 TraesCS6B01G452200 chr1A 52481899 52483436 1537 False 1615.000000 1615 85.751000 886 2428 1 chr1A.!!$F1 1542
11 TraesCS6B01G452200 chr4B 17489016 17490557 1541 False 1109.000000 1109 80.013000 726 2262 1 chr4B.!!$F1 1536
12 TraesCS6B01G452200 chr1B 84159304 84160224 920 False 784.000000 784 82.278000 1494 2428 1 chr1B.!!$F1 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.032267 GCCTAGACATCAGTACCCGC 59.968 60.000 0.00 0.00 0.0 6.13 F
89 90 0.033504 TTCGGAGTGACCAGCAACTC 59.966 55.000 0.00 0.00 38.9 3.01 F
137 138 0.247185 ACGGGCTGCCAAATTGAATG 59.753 50.000 22.05 0.71 0.0 2.67 F
139 140 0.251073 GGGCTGCCAAATTGAATGCT 59.749 50.000 22.05 0.00 0.0 3.79 F
227 228 1.147817 ACAGGGGTCAAATTTCAGCCT 59.852 47.619 10.27 0.00 0.0 4.58 F
1717 1795 1.489649 CCTGAAGGGCATGATCTCACT 59.510 52.381 0.00 0.00 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1332 1402 0.398318 GTTGAGGGAGCCACTTCAGT 59.602 55.000 0.00 0.00 0.00 3.41 R
1458 1530 4.116961 CACTTAAGAACACCGTCTTGTCA 58.883 43.478 10.09 0.00 38.33 3.58 R
1942 2831 5.013547 TCTTCTTTCCTCTTCGTCTCATCT 58.986 41.667 0.00 0.00 0.00 2.90 R
2273 3171 0.991146 TTTGCTAGATGACCAGGCCA 59.009 50.000 5.01 0.00 0.00 5.36 R
2343 3241 0.798776 CAGCACCTTTTAGCCTCACG 59.201 55.000 0.00 0.00 0.00 4.35 R
3253 7281 0.039437 AACCTACAGTGACACGCGAG 60.039 55.000 15.93 7.88 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.593346 GTGGACAGCCTAGACATCAG 57.407 55.000 0.00 0.00 34.31 2.90
20 21 1.827969 GTGGACAGCCTAGACATCAGT 59.172 52.381 0.00 0.00 34.31 3.41
21 22 3.024547 GTGGACAGCCTAGACATCAGTA 58.975 50.000 0.00 0.00 34.31 2.74
22 23 3.024547 TGGACAGCCTAGACATCAGTAC 58.975 50.000 0.00 0.00 34.31 2.73
23 24 2.362717 GGACAGCCTAGACATCAGTACC 59.637 54.545 0.00 0.00 0.00 3.34
24 25 2.362717 GACAGCCTAGACATCAGTACCC 59.637 54.545 0.00 0.00 0.00 3.69
25 26 1.338337 CAGCCTAGACATCAGTACCCG 59.662 57.143 0.00 0.00 0.00 5.28
26 27 0.032267 GCCTAGACATCAGTACCCGC 59.968 60.000 0.00 0.00 0.00 6.13
27 28 0.674534 CCTAGACATCAGTACCCGCC 59.325 60.000 0.00 0.00 0.00 6.13
28 29 1.399714 CTAGACATCAGTACCCGCCA 58.600 55.000 0.00 0.00 0.00 5.69
29 30 1.754803 CTAGACATCAGTACCCGCCAA 59.245 52.381 0.00 0.00 0.00 4.52
30 31 1.204146 AGACATCAGTACCCGCCAAT 58.796 50.000 0.00 0.00 0.00 3.16
31 32 1.559682 AGACATCAGTACCCGCCAATT 59.440 47.619 0.00 0.00 0.00 2.32
32 33 2.026262 AGACATCAGTACCCGCCAATTT 60.026 45.455 0.00 0.00 0.00 1.82
33 34 2.354821 GACATCAGTACCCGCCAATTTC 59.645 50.000 0.00 0.00 0.00 2.17
34 35 2.290641 ACATCAGTACCCGCCAATTTCA 60.291 45.455 0.00 0.00 0.00 2.69
35 36 2.570415 TCAGTACCCGCCAATTTCAA 57.430 45.000 0.00 0.00 0.00 2.69
36 37 2.432444 TCAGTACCCGCCAATTTCAAG 58.568 47.619 0.00 0.00 0.00 3.02
37 38 2.039216 TCAGTACCCGCCAATTTCAAGA 59.961 45.455 0.00 0.00 0.00 3.02
38 39 2.420022 CAGTACCCGCCAATTTCAAGAG 59.580 50.000 0.00 0.00 0.00 2.85
39 40 1.743394 GTACCCGCCAATTTCAAGAGG 59.257 52.381 0.00 0.00 0.00 3.69
40 41 0.404040 ACCCGCCAATTTCAAGAGGA 59.596 50.000 0.00 0.00 0.00 3.71
41 42 1.098050 CCCGCCAATTTCAAGAGGAG 58.902 55.000 0.00 0.00 0.00 3.69
42 43 1.340017 CCCGCCAATTTCAAGAGGAGA 60.340 52.381 0.00 0.00 0.00 3.71
43 44 1.740025 CCGCCAATTTCAAGAGGAGAC 59.260 52.381 0.00 0.00 0.00 3.36
44 45 1.394917 CGCCAATTTCAAGAGGAGACG 59.605 52.381 0.00 0.00 0.00 4.18
45 46 2.699954 GCCAATTTCAAGAGGAGACGA 58.300 47.619 0.00 0.00 0.00 4.20
46 47 2.675348 GCCAATTTCAAGAGGAGACGAG 59.325 50.000 0.00 0.00 0.00 4.18
47 48 2.675348 CCAATTTCAAGAGGAGACGAGC 59.325 50.000 0.00 0.00 0.00 5.03
48 49 3.329386 CAATTTCAAGAGGAGACGAGCA 58.671 45.455 0.00 0.00 0.00 4.26
49 50 3.685139 ATTTCAAGAGGAGACGAGCAA 57.315 42.857 0.00 0.00 0.00 3.91
50 51 2.440539 TTCAAGAGGAGACGAGCAAC 57.559 50.000 0.00 0.00 0.00 4.17
51 52 1.328279 TCAAGAGGAGACGAGCAACA 58.672 50.000 0.00 0.00 0.00 3.33
52 53 1.686587 TCAAGAGGAGACGAGCAACAA 59.313 47.619 0.00 0.00 0.00 2.83
53 54 1.795286 CAAGAGGAGACGAGCAACAAC 59.205 52.381 0.00 0.00 0.00 3.32
54 55 1.333177 AGAGGAGACGAGCAACAACT 58.667 50.000 0.00 0.00 0.00 3.16
55 56 1.271102 AGAGGAGACGAGCAACAACTC 59.729 52.381 0.00 0.00 0.00 3.01
56 57 0.318762 AGGAGACGAGCAACAACTCC 59.681 55.000 0.00 0.00 44.97 3.85
57 58 0.670854 GGAGACGAGCAACAACTCCC 60.671 60.000 0.00 0.00 40.58 4.30
58 59 0.318762 GAGACGAGCAACAACTCCCT 59.681 55.000 0.00 0.00 32.79 4.20
59 60 1.544691 GAGACGAGCAACAACTCCCTA 59.455 52.381 0.00 0.00 32.79 3.53
60 61 1.968493 AGACGAGCAACAACTCCCTAA 59.032 47.619 0.00 0.00 32.79 2.69
61 62 2.367567 AGACGAGCAACAACTCCCTAAA 59.632 45.455 0.00 0.00 32.79 1.85
62 63 2.479275 GACGAGCAACAACTCCCTAAAC 59.521 50.000 0.00 0.00 32.79 2.01
63 64 2.158871 ACGAGCAACAACTCCCTAAACA 60.159 45.455 0.00 0.00 32.79 2.83
64 65 3.074412 CGAGCAACAACTCCCTAAACAT 58.926 45.455 0.00 0.00 32.79 2.71
65 66 3.125316 CGAGCAACAACTCCCTAAACATC 59.875 47.826 0.00 0.00 32.79 3.06
66 67 4.072131 GAGCAACAACTCCCTAAACATCA 58.928 43.478 0.00 0.00 0.00 3.07
67 68 4.074970 AGCAACAACTCCCTAAACATCAG 58.925 43.478 0.00 0.00 0.00 2.90
68 69 3.821033 GCAACAACTCCCTAAACATCAGT 59.179 43.478 0.00 0.00 0.00 3.41
69 70 4.278419 GCAACAACTCCCTAAACATCAGTT 59.722 41.667 0.00 0.00 40.40 3.16
71 72 6.682861 GCAACAACTCCCTAAACATCAGTTTT 60.683 38.462 0.00 0.00 45.32 2.43
72 73 6.635030 ACAACTCCCTAAACATCAGTTTTC 57.365 37.500 0.00 0.00 45.32 2.29
73 74 5.238650 ACAACTCCCTAAACATCAGTTTTCG 59.761 40.000 0.00 0.00 45.32 3.46
74 75 4.324267 ACTCCCTAAACATCAGTTTTCGG 58.676 43.478 0.00 1.56 45.32 4.30
75 76 4.041198 ACTCCCTAAACATCAGTTTTCGGA 59.959 41.667 0.00 4.36 45.32 4.55
76 77 4.575885 TCCCTAAACATCAGTTTTCGGAG 58.424 43.478 0.00 0.00 45.32 4.63
77 78 4.041198 TCCCTAAACATCAGTTTTCGGAGT 59.959 41.667 0.00 0.00 45.32 3.85
78 79 4.154195 CCCTAAACATCAGTTTTCGGAGTG 59.846 45.833 0.00 0.00 45.32 3.51
79 80 4.994852 CCTAAACATCAGTTTTCGGAGTGA 59.005 41.667 0.00 0.00 45.32 3.41
80 81 4.813296 AAACATCAGTTTTCGGAGTGAC 57.187 40.909 0.00 0.00 45.32 3.67
81 82 2.767505 ACATCAGTTTTCGGAGTGACC 58.232 47.619 0.00 0.00 32.16 4.02
82 83 2.104111 ACATCAGTTTTCGGAGTGACCA 59.896 45.455 0.00 0.00 38.90 4.02
83 84 2.526304 TCAGTTTTCGGAGTGACCAG 57.474 50.000 0.00 0.00 38.90 4.00
84 85 0.868406 CAGTTTTCGGAGTGACCAGC 59.132 55.000 0.00 0.00 38.90 4.85
85 86 0.468226 AGTTTTCGGAGTGACCAGCA 59.532 50.000 0.00 0.00 38.90 4.41
86 87 1.134220 AGTTTTCGGAGTGACCAGCAA 60.134 47.619 0.00 0.00 38.90 3.91
87 88 1.002792 GTTTTCGGAGTGACCAGCAAC 60.003 52.381 0.00 0.00 38.90 4.17
88 89 0.468226 TTTCGGAGTGACCAGCAACT 59.532 50.000 0.00 0.00 38.90 3.16
89 90 0.033504 TTCGGAGTGACCAGCAACTC 59.966 55.000 0.00 0.00 38.90 3.01
90 91 1.734477 CGGAGTGACCAGCAACTCG 60.734 63.158 0.00 0.00 38.90 4.18
91 92 1.374758 GGAGTGACCAGCAACTCGG 60.375 63.158 0.00 0.00 38.79 4.63
92 93 1.374758 GAGTGACCAGCAACTCGGG 60.375 63.158 0.00 0.00 36.01 5.14
93 94 3.050275 GTGACCAGCAACTCGGGC 61.050 66.667 0.00 0.00 32.86 6.13
94 95 4.680237 TGACCAGCAACTCGGGCG 62.680 66.667 0.00 0.00 36.08 6.13
95 96 4.373116 GACCAGCAACTCGGGCGA 62.373 66.667 0.00 0.00 36.08 5.54
96 97 3.665675 GACCAGCAACTCGGGCGAT 62.666 63.158 0.00 0.00 36.08 4.58
97 98 3.197790 CCAGCAACTCGGGCGATG 61.198 66.667 0.00 0.00 36.08 3.84
98 99 3.197790 CAGCAACTCGGGCGATGG 61.198 66.667 0.00 0.00 36.08 3.51
109 110 3.987404 GCGATGGCCAAGTCTTGT 58.013 55.556 10.96 0.00 0.00 3.16
110 111 1.796796 GCGATGGCCAAGTCTTGTC 59.203 57.895 10.96 0.00 0.00 3.18
111 112 1.970917 GCGATGGCCAAGTCTTGTCG 61.971 60.000 10.96 14.44 0.00 4.35
112 113 0.670546 CGATGGCCAAGTCTTGTCGT 60.671 55.000 10.96 4.96 0.00 4.34
113 114 1.079503 GATGGCCAAGTCTTGTCGTC 58.920 55.000 10.96 9.85 0.00 4.20
114 115 0.670546 ATGGCCAAGTCTTGTCGTCG 60.671 55.000 10.96 0.00 0.00 5.12
115 116 2.027625 GGCCAAGTCTTGTCGTCGG 61.028 63.158 11.61 0.00 0.00 4.79
116 117 2.668280 GCCAAGTCTTGTCGTCGGC 61.668 63.158 11.61 2.91 0.00 5.54
117 118 2.372690 CCAAGTCTTGTCGTCGGCG 61.373 63.158 1.15 1.15 39.92 6.46
118 119 1.371267 CAAGTCTTGTCGTCGGCGA 60.371 57.895 8.66 8.66 45.79 5.54
132 133 3.747976 GCGACGGGCTGCCAAATT 61.748 61.111 22.05 0.08 39.11 1.82
133 134 2.179018 CGACGGGCTGCCAAATTG 59.821 61.111 22.05 4.98 0.00 2.32
134 135 2.331893 CGACGGGCTGCCAAATTGA 61.332 57.895 22.05 0.00 0.00 2.57
135 136 1.861542 CGACGGGCTGCCAAATTGAA 61.862 55.000 22.05 0.00 0.00 2.69
136 137 0.532115 GACGGGCTGCCAAATTGAAT 59.468 50.000 22.05 0.00 0.00 2.57
137 138 0.247185 ACGGGCTGCCAAATTGAATG 59.753 50.000 22.05 0.71 0.00 2.67
138 139 1.085501 CGGGCTGCCAAATTGAATGC 61.086 55.000 22.05 0.00 0.00 3.56
139 140 0.251073 GGGCTGCCAAATTGAATGCT 59.749 50.000 22.05 0.00 0.00 3.79
140 141 1.481772 GGGCTGCCAAATTGAATGCTA 59.518 47.619 22.05 0.00 0.00 3.49
141 142 2.093553 GGGCTGCCAAATTGAATGCTAA 60.094 45.455 22.05 0.00 0.00 3.09
142 143 3.192466 GGCTGCCAAATTGAATGCTAAG 58.808 45.455 15.17 0.00 0.00 2.18
143 144 3.192466 GCTGCCAAATTGAATGCTAAGG 58.808 45.455 0.00 0.00 0.00 2.69
144 145 3.368739 GCTGCCAAATTGAATGCTAAGGT 60.369 43.478 0.00 0.00 0.00 3.50
145 146 4.178540 CTGCCAAATTGAATGCTAAGGTG 58.821 43.478 0.00 0.00 0.00 4.00
146 147 3.831333 TGCCAAATTGAATGCTAAGGTGA 59.169 39.130 0.00 0.00 0.00 4.02
147 148 4.082081 TGCCAAATTGAATGCTAAGGTGAG 60.082 41.667 0.00 0.00 0.00 3.51
148 149 4.082026 GCCAAATTGAATGCTAAGGTGAGT 60.082 41.667 0.00 0.00 0.00 3.41
149 150 5.567423 GCCAAATTGAATGCTAAGGTGAGTT 60.567 40.000 0.00 0.00 0.00 3.01
150 151 6.095377 CCAAATTGAATGCTAAGGTGAGTTC 58.905 40.000 0.00 0.00 0.00 3.01
151 152 5.904362 AATTGAATGCTAAGGTGAGTTCC 57.096 39.130 0.00 0.00 0.00 3.62
152 153 4.640771 TTGAATGCTAAGGTGAGTTCCT 57.359 40.909 0.00 0.00 39.84 3.36
154 155 4.326826 TGAATGCTAAGGTGAGTTCCTTG 58.673 43.478 8.06 0.91 45.96 3.61
155 156 4.202461 TGAATGCTAAGGTGAGTTCCTTGT 60.202 41.667 8.06 0.00 45.96 3.16
156 157 3.402628 TGCTAAGGTGAGTTCCTTGTC 57.597 47.619 8.06 1.42 45.96 3.18
157 158 2.038557 TGCTAAGGTGAGTTCCTTGTCC 59.961 50.000 8.06 0.00 45.96 4.02
158 159 2.303311 GCTAAGGTGAGTTCCTTGTCCT 59.697 50.000 8.06 0.00 45.96 3.85
159 160 3.617775 GCTAAGGTGAGTTCCTTGTCCTC 60.618 52.174 8.06 0.00 45.96 3.71
160 161 2.407340 AGGTGAGTTCCTTGTCCTCT 57.593 50.000 0.00 0.00 33.52 3.69
161 162 2.252714 AGGTGAGTTCCTTGTCCTCTC 58.747 52.381 0.00 0.00 33.52 3.20
162 163 1.276705 GGTGAGTTCCTTGTCCTCTCC 59.723 57.143 0.00 0.00 33.31 3.71
163 164 2.252714 GTGAGTTCCTTGTCCTCTCCT 58.747 52.381 0.00 0.00 0.00 3.69
164 165 2.635427 GTGAGTTCCTTGTCCTCTCCTT 59.365 50.000 0.00 0.00 0.00 3.36
165 166 2.900546 TGAGTTCCTTGTCCTCTCCTTC 59.099 50.000 0.00 0.00 0.00 3.46
166 167 2.235155 GAGTTCCTTGTCCTCTCCTTCC 59.765 54.545 0.00 0.00 0.00 3.46
167 168 2.158081 AGTTCCTTGTCCTCTCCTTCCT 60.158 50.000 0.00 0.00 0.00 3.36
168 169 2.235155 GTTCCTTGTCCTCTCCTTCCTC 59.765 54.545 0.00 0.00 0.00 3.71
169 170 1.719378 TCCTTGTCCTCTCCTTCCTCT 59.281 52.381 0.00 0.00 0.00 3.69
170 171 1.830477 CCTTGTCCTCTCCTTCCTCTG 59.170 57.143 0.00 0.00 0.00 3.35
171 172 2.558575 CCTTGTCCTCTCCTTCCTCTGA 60.559 54.545 0.00 0.00 0.00 3.27
172 173 3.169099 CTTGTCCTCTCCTTCCTCTGAA 58.831 50.000 0.00 0.00 0.00 3.02
173 174 3.481559 TGTCCTCTCCTTCCTCTGAAT 57.518 47.619 0.00 0.00 0.00 2.57
174 175 4.609866 TGTCCTCTCCTTCCTCTGAATA 57.390 45.455 0.00 0.00 0.00 1.75
175 176 5.149584 TGTCCTCTCCTTCCTCTGAATAT 57.850 43.478 0.00 0.00 0.00 1.28
176 177 5.144100 TGTCCTCTCCTTCCTCTGAATATC 58.856 45.833 0.00 0.00 0.00 1.63
177 178 5.103301 TGTCCTCTCCTTCCTCTGAATATCT 60.103 44.000 0.00 0.00 0.00 1.98
178 179 5.838521 GTCCTCTCCTTCCTCTGAATATCTT 59.161 44.000 0.00 0.00 0.00 2.40
179 180 7.007723 GTCCTCTCCTTCCTCTGAATATCTTA 58.992 42.308 0.00 0.00 0.00 2.10
180 181 7.673926 GTCCTCTCCTTCCTCTGAATATCTTAT 59.326 40.741 0.00 0.00 0.00 1.73
181 182 8.238060 TCCTCTCCTTCCTCTGAATATCTTATT 58.762 37.037 0.00 0.00 0.00 1.40
182 183 8.879227 CCTCTCCTTCCTCTGAATATCTTATTT 58.121 37.037 0.00 0.00 0.00 1.40
185 186 9.500785 CTCCTTCCTCTGAATATCTTATTTTCC 57.499 37.037 0.00 0.00 0.00 3.13
186 187 9.230477 TCCTTCCTCTGAATATCTTATTTTCCT 57.770 33.333 0.00 0.00 0.00 3.36
187 188 9.282569 CCTTCCTCTGAATATCTTATTTTCCTG 57.717 37.037 0.00 0.00 0.00 3.86
190 191 9.439461 TCCTCTGAATATCTTATTTTCCTGAGA 57.561 33.333 0.00 0.00 30.04 3.27
191 192 9.709495 CCTCTGAATATCTTATTTTCCTGAGAG 57.291 37.037 0.00 0.00 30.04 3.20
207 208 9.642343 TTTCCTGAGAGTATATACTTTAGCAGA 57.358 33.333 22.89 13.28 36.50 4.26
208 209 8.624367 TCCTGAGAGTATATACTTTAGCAGAC 57.376 38.462 22.89 9.75 36.50 3.51
209 210 8.218488 TCCTGAGAGTATATACTTTAGCAGACA 58.782 37.037 22.89 10.87 36.50 3.41
210 211 8.511321 CCTGAGAGTATATACTTTAGCAGACAG 58.489 40.741 22.89 16.53 36.50 3.51
211 212 8.397575 TGAGAGTATATACTTTAGCAGACAGG 57.602 38.462 16.46 0.00 36.50 4.00
212 213 7.448777 TGAGAGTATATACTTTAGCAGACAGGG 59.551 40.741 16.46 0.00 36.50 4.45
213 214 6.722129 AGAGTATATACTTTAGCAGACAGGGG 59.278 42.308 16.46 0.00 36.50 4.79
214 215 6.382925 AGTATATACTTTAGCAGACAGGGGT 58.617 40.000 9.71 0.00 31.13 4.95
215 216 5.810080 ATATACTTTAGCAGACAGGGGTC 57.190 43.478 0.00 0.00 44.66 4.46
216 217 1.729586 ACTTTAGCAGACAGGGGTCA 58.270 50.000 0.00 0.00 46.80 4.02
217 218 2.054799 ACTTTAGCAGACAGGGGTCAA 58.945 47.619 0.00 0.00 46.80 3.18
218 219 2.441750 ACTTTAGCAGACAGGGGTCAAA 59.558 45.455 0.00 0.00 46.80 2.69
219 220 3.074538 ACTTTAGCAGACAGGGGTCAAAT 59.925 43.478 0.00 0.00 46.80 2.32
220 221 3.806949 TTAGCAGACAGGGGTCAAATT 57.193 42.857 0.00 0.00 46.80 1.82
221 222 2.683211 AGCAGACAGGGGTCAAATTT 57.317 45.000 0.00 0.00 46.80 1.82
222 223 2.519013 AGCAGACAGGGGTCAAATTTC 58.481 47.619 0.00 0.00 46.80 2.17
223 224 2.158475 AGCAGACAGGGGTCAAATTTCA 60.158 45.455 0.00 0.00 46.80 2.69
224 225 2.229784 GCAGACAGGGGTCAAATTTCAG 59.770 50.000 0.00 0.00 46.80 3.02
225 226 2.229784 CAGACAGGGGTCAAATTTCAGC 59.770 50.000 0.00 0.00 46.80 4.26
226 227 1.546029 GACAGGGGTCAAATTTCAGCC 59.454 52.381 1.02 1.02 43.73 4.85
227 228 1.147817 ACAGGGGTCAAATTTCAGCCT 59.852 47.619 10.27 0.00 0.00 4.58
228 229 2.378547 ACAGGGGTCAAATTTCAGCCTA 59.621 45.455 10.27 0.00 0.00 3.93
229 230 3.011708 ACAGGGGTCAAATTTCAGCCTAT 59.988 43.478 10.27 0.00 0.00 2.57
230 231 4.026052 CAGGGGTCAAATTTCAGCCTATT 58.974 43.478 10.27 0.00 0.00 1.73
231 232 5.200483 CAGGGGTCAAATTTCAGCCTATTA 58.800 41.667 10.27 0.00 0.00 0.98
232 233 5.300286 CAGGGGTCAAATTTCAGCCTATTAG 59.700 44.000 10.27 0.00 0.00 1.73
233 234 5.193728 AGGGGTCAAATTTCAGCCTATTAGA 59.806 40.000 10.27 0.00 0.00 2.10
234 235 5.299531 GGGGTCAAATTTCAGCCTATTAGAC 59.700 44.000 10.27 0.44 0.00 2.59
235 236 5.885912 GGGTCAAATTTCAGCCTATTAGACA 59.114 40.000 2.67 0.00 0.00 3.41
236 237 6.038714 GGGTCAAATTTCAGCCTATTAGACAG 59.961 42.308 2.67 0.00 0.00 3.51
237 238 6.458888 GGTCAAATTTCAGCCTATTAGACAGC 60.459 42.308 0.00 0.00 0.00 4.40
238 239 6.094048 GTCAAATTTCAGCCTATTAGACAGCA 59.906 38.462 0.00 0.00 0.00 4.41
239 240 6.830324 TCAAATTTCAGCCTATTAGACAGCAT 59.170 34.615 0.00 0.00 0.00 3.79
240 241 7.992608 TCAAATTTCAGCCTATTAGACAGCATA 59.007 33.333 0.00 0.00 0.00 3.14
241 242 8.623903 CAAATTTCAGCCTATTAGACAGCATAA 58.376 33.333 0.00 0.00 0.00 1.90
242 243 8.752005 AATTTCAGCCTATTAGACAGCATAAA 57.248 30.769 0.00 0.00 0.00 1.40
243 244 8.752005 ATTTCAGCCTATTAGACAGCATAAAA 57.248 30.769 0.00 0.00 0.00 1.52
244 245 8.574251 TTTCAGCCTATTAGACAGCATAAAAA 57.426 30.769 0.00 0.00 0.00 1.94
245 246 8.752005 TTCAGCCTATTAGACAGCATAAAAAT 57.248 30.769 0.00 0.00 0.00 1.82
246 247 8.752005 TCAGCCTATTAGACAGCATAAAAATT 57.248 30.769 0.00 0.00 0.00 1.82
247 248 8.623903 TCAGCCTATTAGACAGCATAAAAATTG 58.376 33.333 0.00 0.00 0.00 2.32
248 249 8.623903 CAGCCTATTAGACAGCATAAAAATTGA 58.376 33.333 0.00 0.00 0.00 2.57
249 250 9.189156 AGCCTATTAGACAGCATAAAAATTGAA 57.811 29.630 0.00 0.00 0.00 2.69
250 251 9.971922 GCCTATTAGACAGCATAAAAATTGAAT 57.028 29.630 0.00 0.00 0.00 2.57
257 258 9.985730 AGACAGCATAAAAATTGAATCTTTTGA 57.014 25.926 7.72 0.00 0.00 2.69
259 260 9.985730 ACAGCATAAAAATTGAATCTTTTGAGA 57.014 25.926 7.72 0.00 0.00 3.27
269 270 6.985188 TGAATCTTTTGAGATCCTTAACCG 57.015 37.500 0.00 0.00 0.00 4.44
270 271 5.880332 TGAATCTTTTGAGATCCTTAACCGG 59.120 40.000 0.00 0.00 0.00 5.28
271 272 4.903045 TCTTTTGAGATCCTTAACCGGT 57.097 40.909 0.00 0.00 0.00 5.28
272 273 4.828829 TCTTTTGAGATCCTTAACCGGTC 58.171 43.478 8.04 0.00 0.00 4.79
273 274 4.285003 TCTTTTGAGATCCTTAACCGGTCA 59.715 41.667 8.04 0.00 0.00 4.02
274 275 4.627284 TTTGAGATCCTTAACCGGTCAA 57.373 40.909 8.04 0.00 0.00 3.18
275 276 4.627284 TTGAGATCCTTAACCGGTCAAA 57.373 40.909 8.04 4.66 0.00 2.69
276 277 4.837093 TGAGATCCTTAACCGGTCAAAT 57.163 40.909 8.04 0.00 0.00 2.32
277 278 5.174037 TGAGATCCTTAACCGGTCAAATT 57.826 39.130 8.04 0.00 0.00 1.82
278 279 5.566469 TGAGATCCTTAACCGGTCAAATTT 58.434 37.500 8.04 0.00 0.00 1.82
279 280 6.007703 TGAGATCCTTAACCGGTCAAATTTT 58.992 36.000 8.04 0.00 0.00 1.82
280 281 7.169591 TGAGATCCTTAACCGGTCAAATTTTA 58.830 34.615 8.04 0.00 0.00 1.52
281 282 7.335924 TGAGATCCTTAACCGGTCAAATTTTAG 59.664 37.037 8.04 0.00 0.00 1.85
282 283 7.173032 AGATCCTTAACCGGTCAAATTTTAGT 58.827 34.615 8.04 0.00 0.00 2.24
283 284 6.806388 TCCTTAACCGGTCAAATTTTAGTC 57.194 37.500 8.04 0.00 0.00 2.59
284 285 6.536447 TCCTTAACCGGTCAAATTTTAGTCT 58.464 36.000 8.04 0.00 0.00 3.24
285 286 6.999871 TCCTTAACCGGTCAAATTTTAGTCTT 59.000 34.615 8.04 0.00 0.00 3.01
286 287 7.503230 TCCTTAACCGGTCAAATTTTAGTCTTT 59.497 33.333 8.04 0.00 0.00 2.52
287 288 8.785946 CCTTAACCGGTCAAATTTTAGTCTTTA 58.214 33.333 8.04 0.00 0.00 1.85
288 289 9.603298 CTTAACCGGTCAAATTTTAGTCTTTAC 57.397 33.333 8.04 0.00 0.00 2.01
289 290 7.812690 AACCGGTCAAATTTTAGTCTTTACT 57.187 32.000 8.04 0.00 39.91 2.24
290 291 7.812690 ACCGGTCAAATTTTAGTCTTTACTT 57.187 32.000 0.00 0.00 37.15 2.24
291 292 8.907222 ACCGGTCAAATTTTAGTCTTTACTTA 57.093 30.769 0.00 0.00 37.15 2.24
292 293 9.341078 ACCGGTCAAATTTTAGTCTTTACTTAA 57.659 29.630 0.00 0.00 37.15 1.85
293 294 9.603298 CCGGTCAAATTTTAGTCTTTACTTAAC 57.397 33.333 0.00 0.00 37.15 2.01
294 295 9.603298 CGGTCAAATTTTAGTCTTTACTTAACC 57.397 33.333 0.00 0.00 37.15 2.85
295 296 9.603298 GGTCAAATTTTAGTCTTTACTTAACCG 57.397 33.333 0.00 0.00 37.15 4.44
303 304 9.635520 TTTAGTCTTTACTTAACCGATCTTCTG 57.364 33.333 0.00 0.00 37.15 3.02
304 305 7.229581 AGTCTTTACTTAACCGATCTTCTGT 57.770 36.000 0.00 0.00 29.00 3.41
305 306 7.668492 AGTCTTTACTTAACCGATCTTCTGTT 58.332 34.615 0.00 0.00 29.00 3.16
306 307 8.148999 AGTCTTTACTTAACCGATCTTCTGTTT 58.851 33.333 0.00 0.00 29.00 2.83
307 308 8.771766 GTCTTTACTTAACCGATCTTCTGTTTT 58.228 33.333 0.00 0.00 0.00 2.43
308 309 8.985805 TCTTTACTTAACCGATCTTCTGTTTTC 58.014 33.333 0.00 0.00 0.00 2.29
309 310 8.665643 TTTACTTAACCGATCTTCTGTTTTCA 57.334 30.769 0.00 0.00 0.00 2.69
362 363 8.530269 AGATCTGATCAAAGTTGAAAATTTGC 57.470 30.769 19.12 0.00 41.13 3.68
363 364 8.145767 AGATCTGATCAAAGTTGAAAATTTGCA 58.854 29.630 19.12 0.00 41.13 4.08
364 365 7.467557 TCTGATCAAAGTTGAAAATTTGCAC 57.532 32.000 10.29 7.71 41.13 4.57
365 366 7.267128 TCTGATCAAAGTTGAAAATTTGCACT 58.733 30.769 10.29 0.00 41.13 4.40
366 367 7.223193 TCTGATCAAAGTTGAAAATTTGCACTG 59.777 33.333 10.29 10.05 41.13 3.66
367 368 7.040494 TGATCAAAGTTGAAAATTTGCACTGA 58.960 30.769 10.29 0.57 41.13 3.41
368 369 7.548427 TGATCAAAGTTGAAAATTTGCACTGAA 59.452 29.630 10.29 0.00 41.13 3.02
369 370 7.846644 TCAAAGTTGAAAATTTGCACTGAAT 57.153 28.000 10.29 0.00 36.55 2.57
370 371 7.908230 TCAAAGTTGAAAATTTGCACTGAATC 58.092 30.769 10.29 0.00 36.55 2.52
371 372 7.548427 TCAAAGTTGAAAATTTGCACTGAATCA 59.452 29.630 10.29 0.00 36.55 2.57
372 373 7.846644 AAGTTGAAAATTTGCACTGAATCAA 57.153 28.000 0.00 0.00 0.00 2.57
373 374 7.846644 AGTTGAAAATTTGCACTGAATCAAA 57.153 28.000 0.00 0.00 36.72 2.69
374 375 8.266392 AGTTGAAAATTTGCACTGAATCAAAA 57.734 26.923 0.00 0.00 36.02 2.44
375 376 8.895737 AGTTGAAAATTTGCACTGAATCAAAAT 58.104 25.926 0.00 0.00 36.02 1.82
376 377 9.505995 GTTGAAAATTTGCACTGAATCAAAATT 57.494 25.926 0.00 0.00 36.02 1.82
382 383 9.715121 AATTTGCACTGAATCAAAATTACATCT 57.285 25.926 2.55 0.00 36.02 2.90
383 384 9.715121 ATTTGCACTGAATCAAAATTACATCTT 57.285 25.926 0.00 0.00 36.02 2.40
384 385 9.545105 TTTGCACTGAATCAAAATTACATCTTT 57.455 25.926 0.00 0.00 30.19 2.52
385 386 8.523523 TGCACTGAATCAAAATTACATCTTTG 57.476 30.769 0.00 0.00 34.49 2.77
386 387 8.358895 TGCACTGAATCAAAATTACATCTTTGA 58.641 29.630 0.18 0.18 43.63 2.69
422 423 8.846943 TTCTGCACAAATAAAATCTAGTCTGA 57.153 30.769 0.00 0.00 0.00 3.27
423 424 9.453572 TTCTGCACAAATAAAATCTAGTCTGAT 57.546 29.630 0.00 0.00 0.00 2.90
424 425 9.453572 TCTGCACAAATAAAATCTAGTCTGATT 57.546 29.630 0.00 0.00 38.19 2.57
457 458 8.409358 AGAAACAATTTCCAATAAGCAGTAGT 57.591 30.769 0.00 0.00 40.54 2.73
458 459 8.860088 AGAAACAATTTCCAATAAGCAGTAGTT 58.140 29.630 0.00 0.00 40.54 2.24
459 460 8.816640 AAACAATTTCCAATAAGCAGTAGTTG 57.183 30.769 0.00 0.00 0.00 3.16
460 461 7.524717 ACAATTTCCAATAAGCAGTAGTTGT 57.475 32.000 0.00 0.00 0.00 3.32
461 462 7.951591 ACAATTTCCAATAAGCAGTAGTTGTT 58.048 30.769 0.00 0.00 0.00 2.83
462 463 8.421002 ACAATTTCCAATAAGCAGTAGTTGTTT 58.579 29.630 0.00 0.00 34.38 2.83
463 464 8.702438 CAATTTCCAATAAGCAGTAGTTGTTTG 58.298 33.333 0.00 0.00 32.13 2.93
464 465 6.952773 TTCCAATAAGCAGTAGTTGTTTGT 57.047 33.333 0.00 0.00 32.13 2.83
465 466 6.952773 TCCAATAAGCAGTAGTTGTTTGTT 57.047 33.333 0.00 0.00 32.92 2.83
466 467 7.341445 TCCAATAAGCAGTAGTTGTTTGTTT 57.659 32.000 0.00 0.00 30.91 2.83
467 468 7.777095 TCCAATAAGCAGTAGTTGTTTGTTTT 58.223 30.769 0.00 0.00 30.91 2.43
468 469 8.254508 TCCAATAAGCAGTAGTTGTTTGTTTTT 58.745 29.630 0.00 0.00 30.91 1.94
469 470 8.539674 CCAATAAGCAGTAGTTGTTTGTTTTTC 58.460 33.333 0.00 0.00 30.91 2.29
470 471 9.301153 CAATAAGCAGTAGTTGTTTGTTTTTCT 57.699 29.630 0.00 0.00 30.91 2.52
471 472 9.869757 AATAAGCAGTAGTTGTTTGTTTTTCTT 57.130 25.926 0.00 0.00 29.40 2.52
472 473 9.869757 ATAAGCAGTAGTTGTTTGTTTTTCTTT 57.130 25.926 0.00 0.00 32.13 2.52
474 475 9.869757 AAGCAGTAGTTGTTTGTTTTTCTTTAT 57.130 25.926 0.00 0.00 0.00 1.40
526 527 9.790389 TTATAACAACACGACAAAAATCAAAGT 57.210 25.926 0.00 0.00 0.00 2.66
527 528 8.696410 ATAACAACACGACAAAAATCAAAGTT 57.304 26.923 0.00 0.00 0.00 2.66
528 529 7.414814 AACAACACGACAAAAATCAAAGTTT 57.585 28.000 0.00 0.00 0.00 2.66
529 530 8.522178 AACAACACGACAAAAATCAAAGTTTA 57.478 26.923 0.00 0.00 0.00 2.01
530 531 8.168681 ACAACACGACAAAAATCAAAGTTTAG 57.831 30.769 0.00 0.00 0.00 1.85
531 532 7.810759 ACAACACGACAAAAATCAAAGTTTAGT 59.189 29.630 0.00 0.00 0.00 2.24
532 533 8.643752 CAACACGACAAAAATCAAAGTTTAGTT 58.356 29.630 0.00 0.00 0.00 2.24
533 534 9.843334 AACACGACAAAAATCAAAGTTTAGTTA 57.157 25.926 0.00 0.00 0.00 2.24
550 551 9.924650 AGTTTAGTTATCAGTAATCGTCTTTGT 57.075 29.630 0.00 0.00 0.00 2.83
634 635 9.903682 GCATAGAAGTTGCACATCATAAAATAT 57.096 29.630 0.00 0.00 39.90 1.28
690 693 6.681777 ACTCTTATTTGTCTTGATGCCAAAC 58.318 36.000 0.00 0.00 31.50 2.93
700 703 2.194597 TGCCAAACGCAGAAGGGT 59.805 55.556 0.00 0.00 44.64 4.34
737 792 2.721231 GCGCACTGCAAGAACCAA 59.279 55.556 0.30 0.00 45.45 3.67
1022 1086 1.734477 CGGCACACTTGGTCGAGAG 60.734 63.158 0.00 0.00 0.00 3.20
1075 1142 2.429971 GAGATCAGTGACATGGCTGAGA 59.570 50.000 17.49 6.48 43.81 3.27
1091 1158 4.444591 GGCTGAGAATGATCTGATCACCTT 60.445 45.833 21.71 13.50 43.01 3.50
1097 1164 2.621338 TGATCTGATCACCTTTGCGAC 58.379 47.619 16.06 0.00 33.59 5.19
1332 1402 5.049060 CCAATGTATGGTTGAACGAGTTGAA 60.049 40.000 0.00 0.00 44.85 2.69
1379 1449 1.546029 GATGGTCTTTGAAGGTTGGCC 59.454 52.381 0.00 0.00 0.00 5.36
1458 1530 4.331968 TCACAAATCTTGCCCTTCGTTAT 58.668 39.130 0.00 0.00 0.00 1.89
1511 1583 2.677337 GCGGTACCTCTATACGAGATCC 59.323 54.545 10.90 0.00 42.62 3.36
1717 1795 1.489649 CCTGAAGGGCATGATCTCACT 59.510 52.381 0.00 0.00 0.00 3.41
1942 2831 5.106197 GGATCATGCGTGCAATATGGAAATA 60.106 40.000 0.00 0.00 0.00 1.40
2269 3167 3.895998 TGCCATATTGCACTATGGTGAA 58.104 40.909 32.10 20.79 46.68 3.18
2360 3262 1.234615 TGCGTGAGGCTAAAAGGTGC 61.235 55.000 0.00 0.00 44.05 5.01
2377 3295 4.495422 AGGTGCTGATTTTACAGTAGTCG 58.505 43.478 0.00 0.00 39.73 4.18
2414 3332 4.415881 TGGTTGAGAGCTTGTTTCAGTA 57.584 40.909 0.00 0.00 0.00 2.74
2457 3428 5.573380 TGGTACTACTACGTATGGAGGAT 57.427 43.478 0.00 0.00 0.00 3.24
2460 3431 6.270927 TGGTACTACTACGTATGGAGGATAGT 59.729 42.308 0.00 1.30 0.00 2.12
2465 3436 9.486123 ACTACTACGTATGGAGGATAGTATAGA 57.514 37.037 0.00 0.00 30.16 1.98
2493 3501 6.943146 TGTTGCTATGTTGGTTATGGTCTAAA 59.057 34.615 0.00 0.00 0.00 1.85
2535 3543 5.929992 TGTTACTTAATGCGAAACTGCTAGT 59.070 36.000 0.00 0.00 35.36 2.57
2539 3547 1.914634 ATGCGAAACTGCTAGTCGAG 58.085 50.000 4.06 0.00 36.92 4.04
2555 3563 2.939103 GTCGAGATTCCAAACCTCATGG 59.061 50.000 0.00 0.00 39.41 3.66
2672 5774 0.541863 AACACGAGCTCAATAGGGGG 59.458 55.000 15.40 0.00 0.00 5.40
2684 5786 5.532779 GCTCAATAGGGGGTTCAAAAGATAG 59.467 44.000 0.00 0.00 0.00 2.08
2691 5793 4.567747 GGGGGTTCAAAAGATAGCAGAGAA 60.568 45.833 0.00 0.00 0.00 2.87
2692 5794 5.196695 GGGGTTCAAAAGATAGCAGAGAAT 58.803 41.667 0.00 0.00 0.00 2.40
2828 6822 1.878953 GAAAAGACGCTCTTGTCCCA 58.121 50.000 6.65 0.00 35.23 4.37
2836 6830 0.915364 GCTCTTGTCCCAGGGAAGAT 59.085 55.000 10.89 0.00 31.38 2.40
2911 6905 1.709147 CTGTAGCGGTGCATGAAGCC 61.709 60.000 5.70 0.00 44.83 4.35
2946 6964 4.275689 TGTTTTGTCCTGTGATGTGATGTC 59.724 41.667 0.00 0.00 0.00 3.06
2947 6965 2.768253 TGTCCTGTGATGTGATGTCC 57.232 50.000 0.00 0.00 0.00 4.02
2995 7022 8.682936 ATTCTTCTTTCTAGTCAACACATTGT 57.317 30.769 0.00 0.00 37.11 2.71
3073 7101 6.916360 ATGGGCAAGAGAGAAACAATAAAA 57.084 33.333 0.00 0.00 0.00 1.52
3076 7104 6.016276 TGGGCAAGAGAGAAACAATAAAAGAC 60.016 38.462 0.00 0.00 0.00 3.01
3086 7114 7.264947 AGAAACAATAAAAGACACCAAACCTG 58.735 34.615 0.00 0.00 0.00 4.00
3087 7115 6.783708 AACAATAAAAGACACCAAACCTGA 57.216 33.333 0.00 0.00 0.00 3.86
3088 7116 6.783708 ACAATAAAAGACACCAAACCTGAA 57.216 33.333 0.00 0.00 0.00 3.02
3090 7118 8.472007 ACAATAAAAGACACCAAACCTGAATA 57.528 30.769 0.00 0.00 0.00 1.75
3091 7119 8.576442 ACAATAAAAGACACCAAACCTGAATAG 58.424 33.333 0.00 0.00 0.00 1.73
3093 7121 6.391227 AAAAGACACCAAACCTGAATAGTG 57.609 37.500 0.00 0.00 0.00 2.74
3095 7123 4.389374 AGACACCAAACCTGAATAGTGTG 58.611 43.478 0.00 0.00 38.49 3.82
3096 7124 4.102524 AGACACCAAACCTGAATAGTGTGA 59.897 41.667 0.00 0.00 38.49 3.58
3098 7126 4.133820 CACCAAACCTGAATAGTGTGACA 58.866 43.478 0.00 0.00 0.00 3.58
3099 7127 4.578516 CACCAAACCTGAATAGTGTGACAA 59.421 41.667 0.00 0.00 0.00 3.18
3100 7128 5.067153 CACCAAACCTGAATAGTGTGACAAA 59.933 40.000 0.00 0.00 0.00 2.83
3101 7129 5.299279 ACCAAACCTGAATAGTGTGACAAAG 59.701 40.000 0.00 0.00 0.00 2.77
3102 7130 5.215160 CAAACCTGAATAGTGTGACAAAGC 58.785 41.667 0.00 0.00 0.00 3.51
3103 7131 3.412386 ACCTGAATAGTGTGACAAAGCC 58.588 45.455 0.00 0.00 0.00 4.35
3104 7132 3.181445 ACCTGAATAGTGTGACAAAGCCA 60.181 43.478 0.00 0.00 0.00 4.75
3105 7133 4.012374 CCTGAATAGTGTGACAAAGCCAT 58.988 43.478 0.00 0.00 0.00 4.40
3106 7134 5.185454 CCTGAATAGTGTGACAAAGCCATA 58.815 41.667 0.00 0.00 0.00 2.74
3107 7135 5.824624 CCTGAATAGTGTGACAAAGCCATAT 59.175 40.000 0.00 0.00 0.00 1.78
3146 7174 4.717313 GAAGAAAGGCCGCCCCGT 62.717 66.667 5.55 0.00 39.21 5.28
3187 7215 4.911610 CAGCGCCAGTTTATTATGCAATAC 59.088 41.667 2.29 0.00 0.00 1.89
3188 7216 4.821805 AGCGCCAGTTTATTATGCAATACT 59.178 37.500 2.29 0.00 0.00 2.12
3189 7217 5.995282 AGCGCCAGTTTATTATGCAATACTA 59.005 36.000 2.29 0.00 0.00 1.82
3208 7236 8.450964 CAATACTACAAATGTTGAATCGGAACT 58.549 33.333 2.08 0.00 0.00 3.01
3211 7239 3.244976 CAAATGTTGAATCGGAACTGCC 58.755 45.455 0.00 0.00 0.00 4.85
3233 7261 4.996788 GTGGAACGTCTAGGATTTAGGA 57.003 45.455 0.00 0.00 0.00 2.94
3234 7262 5.334724 GTGGAACGTCTAGGATTTAGGAA 57.665 43.478 0.00 0.00 0.00 3.36
3235 7263 5.349809 GTGGAACGTCTAGGATTTAGGAAG 58.650 45.833 0.00 0.00 0.00 3.46
3236 7264 5.126707 GTGGAACGTCTAGGATTTAGGAAGA 59.873 44.000 0.00 0.00 0.00 2.87
3237 7265 5.360144 TGGAACGTCTAGGATTTAGGAAGAG 59.640 44.000 0.00 0.00 0.00 2.85
3238 7266 5.221283 GGAACGTCTAGGATTTAGGAAGAGG 60.221 48.000 0.00 0.00 0.00 3.69
3239 7267 3.637694 ACGTCTAGGATTTAGGAAGAGGC 59.362 47.826 0.00 0.00 0.00 4.70
3240 7268 3.637229 CGTCTAGGATTTAGGAAGAGGCA 59.363 47.826 0.00 0.00 0.00 4.75
3241 7269 4.261825 CGTCTAGGATTTAGGAAGAGGCAG 60.262 50.000 0.00 0.00 0.00 4.85
3242 7270 4.039852 GTCTAGGATTTAGGAAGAGGCAGG 59.960 50.000 0.00 0.00 0.00 4.85
3243 7271 2.131023 AGGATTTAGGAAGAGGCAGGG 58.869 52.381 0.00 0.00 0.00 4.45
3244 7272 1.477740 GGATTTAGGAAGAGGCAGGGC 60.478 57.143 0.00 0.00 0.00 5.19
3256 7284 3.052082 CAGGGCCACTGTTGCTCG 61.052 66.667 6.18 0.00 42.42 5.03
3260 7288 4.374702 GCCACTGTTGCTCGCGTG 62.375 66.667 5.77 4.44 0.00 5.34
3261 7289 2.967076 CCACTGTTGCTCGCGTGT 60.967 61.111 5.77 0.00 0.00 4.49
3262 7290 2.546321 CACTGTTGCTCGCGTGTC 59.454 61.111 5.77 0.50 0.00 3.67
3263 7291 2.106131 ACTGTTGCTCGCGTGTCA 59.894 55.556 5.77 3.46 0.00 3.58
3264 7292 2.237751 ACTGTTGCTCGCGTGTCAC 61.238 57.895 5.77 5.47 0.00 3.67
3265 7293 1.951130 CTGTTGCTCGCGTGTCACT 60.951 57.895 5.77 0.00 0.00 3.41
3266 7294 2.150809 CTGTTGCTCGCGTGTCACTG 62.151 60.000 5.77 5.30 0.00 3.66
3267 7295 2.106131 TTGCTCGCGTGTCACTGT 59.894 55.556 5.77 0.00 0.00 3.55
3268 7296 0.937699 GTTGCTCGCGTGTCACTGTA 60.938 55.000 5.77 0.00 0.00 2.74
3269 7297 0.663269 TTGCTCGCGTGTCACTGTAG 60.663 55.000 5.77 0.00 0.00 2.74
3270 7298 1.801913 GCTCGCGTGTCACTGTAGG 60.802 63.158 5.77 0.00 0.00 3.18
3271 7299 1.579932 CTCGCGTGTCACTGTAGGT 59.420 57.895 5.77 0.00 0.00 3.08
3272 7300 0.039437 CTCGCGTGTCACTGTAGGTT 60.039 55.000 5.77 0.00 0.00 3.50
3273 7301 0.318360 TCGCGTGTCACTGTAGGTTG 60.318 55.000 5.77 0.00 0.00 3.77
3274 7302 1.860078 GCGTGTCACTGTAGGTTGC 59.140 57.895 0.65 0.00 0.00 4.17
3275 7303 0.600255 GCGTGTCACTGTAGGTTGCT 60.600 55.000 0.65 0.00 0.00 3.91
3276 7304 1.419374 CGTGTCACTGTAGGTTGCTC 58.581 55.000 0.65 0.00 0.00 4.26
3277 7305 1.419374 GTGTCACTGTAGGTTGCTCG 58.581 55.000 0.00 0.00 0.00 5.03
3278 7306 1.000607 GTGTCACTGTAGGTTGCTCGA 60.001 52.381 0.00 0.00 0.00 4.04
3279 7307 1.893137 TGTCACTGTAGGTTGCTCGAT 59.107 47.619 0.00 0.00 0.00 3.59
3280 7308 2.263077 GTCACTGTAGGTTGCTCGATG 58.737 52.381 0.00 0.00 0.00 3.84
3281 7309 1.893137 TCACTGTAGGTTGCTCGATGT 59.107 47.619 0.00 0.00 0.00 3.06
3282 7310 1.995484 CACTGTAGGTTGCTCGATGTG 59.005 52.381 0.00 0.00 0.00 3.21
3283 7311 1.002366 CTGTAGGTTGCTCGATGTGC 58.998 55.000 0.00 0.00 0.00 4.57
3284 7312 0.608130 TGTAGGTTGCTCGATGTGCT 59.392 50.000 0.00 0.00 0.00 4.40
3285 7313 1.001974 TGTAGGTTGCTCGATGTGCTT 59.998 47.619 0.00 0.00 0.00 3.91
3286 7314 2.076863 GTAGGTTGCTCGATGTGCTTT 58.923 47.619 0.00 0.00 0.00 3.51
3287 7315 1.609208 AGGTTGCTCGATGTGCTTTT 58.391 45.000 0.00 0.00 0.00 2.27
3288 7316 1.956477 AGGTTGCTCGATGTGCTTTTT 59.044 42.857 0.00 0.00 0.00 1.94
3317 7345 9.716507 TTCGTTCTCTTTTATTTCTTTTCACTG 57.283 29.630 0.00 0.00 0.00 3.66
3318 7346 8.342634 TCGTTCTCTTTTATTTCTTTTCACTGG 58.657 33.333 0.00 0.00 0.00 4.00
3319 7347 8.129211 CGTTCTCTTTTATTTCTTTTCACTGGT 58.871 33.333 0.00 0.00 0.00 4.00
3320 7348 9.803315 GTTCTCTTTTATTTCTTTTCACTGGTT 57.197 29.630 0.00 0.00 0.00 3.67
3327 7355 8.850454 TTATTTCTTTTCACTGGTTTTCTTCG 57.150 30.769 0.00 0.00 0.00 3.79
3328 7356 4.893424 TCTTTTCACTGGTTTTCTTCGG 57.107 40.909 0.00 0.00 0.00 4.30
3329 7357 3.630312 TCTTTTCACTGGTTTTCTTCGGG 59.370 43.478 0.00 0.00 0.00 5.14
3330 7358 1.975660 TTCACTGGTTTTCTTCGGGG 58.024 50.000 0.00 0.00 0.00 5.73
3331 7359 0.841289 TCACTGGTTTTCTTCGGGGT 59.159 50.000 0.00 0.00 0.00 4.95
3332 7360 1.213430 TCACTGGTTTTCTTCGGGGTT 59.787 47.619 0.00 0.00 0.00 4.11
3333 7361 2.028876 CACTGGTTTTCTTCGGGGTTT 58.971 47.619 0.00 0.00 0.00 3.27
3334 7362 2.429250 CACTGGTTTTCTTCGGGGTTTT 59.571 45.455 0.00 0.00 0.00 2.43
3335 7363 2.691526 ACTGGTTTTCTTCGGGGTTTTC 59.308 45.455 0.00 0.00 0.00 2.29
3336 7364 2.033372 TGGTTTTCTTCGGGGTTTTCC 58.967 47.619 0.00 0.00 39.75 3.13
3337 7365 2.313317 GGTTTTCTTCGGGGTTTTCCT 58.687 47.619 0.00 0.00 40.46 3.36
3338 7366 2.696707 GGTTTTCTTCGGGGTTTTCCTT 59.303 45.455 0.00 0.00 40.46 3.36
3339 7367 3.133362 GGTTTTCTTCGGGGTTTTCCTTT 59.867 43.478 0.00 0.00 40.46 3.11
3340 7368 4.383335 GGTTTTCTTCGGGGTTTTCCTTTT 60.383 41.667 0.00 0.00 40.46 2.27
3341 7369 4.659111 TTTCTTCGGGGTTTTCCTTTTC 57.341 40.909 0.00 0.00 40.46 2.29
3342 7370 2.223745 TCTTCGGGGTTTTCCTTTTCG 58.776 47.619 0.00 0.00 40.46 3.46
3343 7371 1.951602 CTTCGGGGTTTTCCTTTTCGT 59.048 47.619 0.00 0.00 40.46 3.85
3344 7372 2.055684 TCGGGGTTTTCCTTTTCGTT 57.944 45.000 0.00 0.00 40.46 3.85
3345 7373 2.377073 TCGGGGTTTTCCTTTTCGTTT 58.623 42.857 0.00 0.00 40.46 3.60
3346 7374 2.759535 TCGGGGTTTTCCTTTTCGTTTT 59.240 40.909 0.00 0.00 40.46 2.43
3347 7375 2.861335 CGGGGTTTTCCTTTTCGTTTTG 59.139 45.455 0.00 0.00 40.46 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.827969 ACTGATGTCTAGGCTGTCCAC 59.172 52.381 0.00 0.00 33.74 4.02
1 2 2.238084 ACTGATGTCTAGGCTGTCCA 57.762 50.000 0.00 0.00 33.74 4.02
2 3 2.362717 GGTACTGATGTCTAGGCTGTCC 59.637 54.545 0.00 0.00 0.00 4.02
3 4 2.362717 GGGTACTGATGTCTAGGCTGTC 59.637 54.545 0.00 0.00 0.00 3.51
4 5 2.389715 GGGTACTGATGTCTAGGCTGT 58.610 52.381 0.00 0.00 0.00 4.40
5 6 1.338337 CGGGTACTGATGTCTAGGCTG 59.662 57.143 0.00 0.00 36.31 4.85
6 7 1.693627 CGGGTACTGATGTCTAGGCT 58.306 55.000 0.00 0.00 36.31 4.58
7 8 0.032267 GCGGGTACTGATGTCTAGGC 59.968 60.000 0.00 0.00 36.31 3.93
8 9 0.674534 GGCGGGTACTGATGTCTAGG 59.325 60.000 0.00 0.00 36.31 3.02
9 10 1.399714 TGGCGGGTACTGATGTCTAG 58.600 55.000 0.00 0.00 36.31 2.43
10 11 1.855295 TTGGCGGGTACTGATGTCTA 58.145 50.000 0.00 0.00 36.31 2.59
11 12 1.204146 ATTGGCGGGTACTGATGTCT 58.796 50.000 0.00 0.00 36.31 3.41
12 13 2.038387 AATTGGCGGGTACTGATGTC 57.962 50.000 0.00 0.00 36.31 3.06
13 14 2.290641 TGAAATTGGCGGGTACTGATGT 60.291 45.455 0.00 0.00 36.31 3.06
14 15 2.364632 TGAAATTGGCGGGTACTGATG 58.635 47.619 0.00 0.00 36.31 3.07
15 16 2.799126 TGAAATTGGCGGGTACTGAT 57.201 45.000 0.00 0.00 36.31 2.90
16 17 2.039216 TCTTGAAATTGGCGGGTACTGA 59.961 45.455 0.00 0.00 36.31 3.41
17 18 2.420022 CTCTTGAAATTGGCGGGTACTG 59.580 50.000 0.00 0.00 38.10 2.74
18 19 2.618045 CCTCTTGAAATTGGCGGGTACT 60.618 50.000 0.00 0.00 0.00 2.73
19 20 1.743394 CCTCTTGAAATTGGCGGGTAC 59.257 52.381 0.00 0.00 0.00 3.34
20 21 1.631388 TCCTCTTGAAATTGGCGGGTA 59.369 47.619 0.00 0.00 0.00 3.69
21 22 0.404040 TCCTCTTGAAATTGGCGGGT 59.596 50.000 0.00 0.00 0.00 5.28
22 23 1.098050 CTCCTCTTGAAATTGGCGGG 58.902 55.000 0.00 0.00 0.00 6.13
23 24 1.740025 GTCTCCTCTTGAAATTGGCGG 59.260 52.381 0.00 0.00 0.00 6.13
24 25 1.394917 CGTCTCCTCTTGAAATTGGCG 59.605 52.381 0.00 0.00 0.00 5.69
25 26 2.675348 CTCGTCTCCTCTTGAAATTGGC 59.325 50.000 0.00 0.00 0.00 4.52
26 27 2.675348 GCTCGTCTCCTCTTGAAATTGG 59.325 50.000 0.00 0.00 0.00 3.16
27 28 3.329386 TGCTCGTCTCCTCTTGAAATTG 58.671 45.455 0.00 0.00 0.00 2.32
28 29 3.685139 TGCTCGTCTCCTCTTGAAATT 57.315 42.857 0.00 0.00 0.00 1.82
29 30 3.244215 TGTTGCTCGTCTCCTCTTGAAAT 60.244 43.478 0.00 0.00 0.00 2.17
30 31 2.102420 TGTTGCTCGTCTCCTCTTGAAA 59.898 45.455 0.00 0.00 0.00 2.69
31 32 1.686587 TGTTGCTCGTCTCCTCTTGAA 59.313 47.619 0.00 0.00 0.00 2.69
32 33 1.328279 TGTTGCTCGTCTCCTCTTGA 58.672 50.000 0.00 0.00 0.00 3.02
33 34 1.795286 GTTGTTGCTCGTCTCCTCTTG 59.205 52.381 0.00 0.00 0.00 3.02
34 35 1.689273 AGTTGTTGCTCGTCTCCTCTT 59.311 47.619 0.00 0.00 0.00 2.85
35 36 1.271102 GAGTTGTTGCTCGTCTCCTCT 59.729 52.381 0.00 0.00 0.00 3.69
36 37 1.670380 GGAGTTGTTGCTCGTCTCCTC 60.670 57.143 0.00 0.00 40.78 3.71
37 38 0.318762 GGAGTTGTTGCTCGTCTCCT 59.681 55.000 0.00 0.00 40.78 3.69
38 39 0.670854 GGGAGTTGTTGCTCGTCTCC 60.671 60.000 0.00 0.00 42.53 3.71
39 40 0.318762 AGGGAGTTGTTGCTCGTCTC 59.681 55.000 0.00 0.00 36.41 3.36
40 41 1.629043 TAGGGAGTTGTTGCTCGTCT 58.371 50.000 0.00 0.00 36.41 4.18
41 42 2.450609 TTAGGGAGTTGTTGCTCGTC 57.549 50.000 0.00 0.00 36.41 4.20
42 43 2.158871 TGTTTAGGGAGTTGTTGCTCGT 60.159 45.455 0.00 0.00 36.41 4.18
43 44 2.489971 TGTTTAGGGAGTTGTTGCTCG 58.510 47.619 0.00 0.00 36.41 5.03
44 45 4.072131 TGATGTTTAGGGAGTTGTTGCTC 58.928 43.478 0.00 0.00 34.89 4.26
45 46 4.074970 CTGATGTTTAGGGAGTTGTTGCT 58.925 43.478 0.00 0.00 0.00 3.91
46 47 3.821033 ACTGATGTTTAGGGAGTTGTTGC 59.179 43.478 0.00 0.00 0.00 4.17
47 48 6.391227 AAACTGATGTTTAGGGAGTTGTTG 57.609 37.500 0.00 0.00 43.76 3.33
48 49 6.238648 CGAAAACTGATGTTTAGGGAGTTGTT 60.239 38.462 0.00 0.00 44.70 2.83
49 50 5.238650 CGAAAACTGATGTTTAGGGAGTTGT 59.761 40.000 0.00 0.00 44.70 3.32
50 51 5.334879 CCGAAAACTGATGTTTAGGGAGTTG 60.335 44.000 0.00 0.00 44.70 3.16
51 52 4.760204 CCGAAAACTGATGTTTAGGGAGTT 59.240 41.667 0.00 0.00 44.70 3.01
52 53 4.041198 TCCGAAAACTGATGTTTAGGGAGT 59.959 41.667 12.56 0.00 44.70 3.85
53 54 4.575885 TCCGAAAACTGATGTTTAGGGAG 58.424 43.478 12.56 0.00 44.70 4.30
54 55 4.041198 ACTCCGAAAACTGATGTTTAGGGA 59.959 41.667 12.56 11.67 44.70 4.20
55 56 4.154195 CACTCCGAAAACTGATGTTTAGGG 59.846 45.833 12.56 9.06 44.70 3.53
56 57 4.994852 TCACTCCGAAAACTGATGTTTAGG 59.005 41.667 0.00 0.00 44.70 2.69
57 58 5.107065 GGTCACTCCGAAAACTGATGTTTAG 60.107 44.000 0.00 0.00 44.70 1.85
58 59 4.753107 GGTCACTCCGAAAACTGATGTTTA 59.247 41.667 0.00 0.00 44.70 2.01
59 60 4.925742 TGGTCACTCCGAAAACTGATGTTT 60.926 41.667 0.00 0.00 42.57 2.83
60 61 3.139077 GGTCACTCCGAAAACTGATGTT 58.861 45.455 0.00 0.00 38.16 2.71
61 62 2.104111 TGGTCACTCCGAAAACTGATGT 59.896 45.455 0.00 0.00 39.52 3.06
62 63 2.738846 CTGGTCACTCCGAAAACTGATG 59.261 50.000 0.00 0.00 39.52 3.07
63 64 2.872038 GCTGGTCACTCCGAAAACTGAT 60.872 50.000 0.00 0.00 39.52 2.90
64 65 1.540363 GCTGGTCACTCCGAAAACTGA 60.540 52.381 0.00 0.00 39.52 3.41
65 66 0.868406 GCTGGTCACTCCGAAAACTG 59.132 55.000 0.00 0.00 39.52 3.16
66 67 0.468226 TGCTGGTCACTCCGAAAACT 59.532 50.000 0.00 0.00 39.52 2.66
67 68 1.002792 GTTGCTGGTCACTCCGAAAAC 60.003 52.381 0.00 0.00 39.52 2.43
68 69 1.134220 AGTTGCTGGTCACTCCGAAAA 60.134 47.619 0.00 0.00 39.52 2.29
69 70 0.468226 AGTTGCTGGTCACTCCGAAA 59.532 50.000 0.00 0.00 39.52 3.46
70 71 0.033504 GAGTTGCTGGTCACTCCGAA 59.966 55.000 0.00 0.00 39.52 4.30
71 72 1.666011 GAGTTGCTGGTCACTCCGA 59.334 57.895 0.00 0.00 39.52 4.55
72 73 1.734477 CGAGTTGCTGGTCACTCCG 60.734 63.158 0.00 0.00 39.52 4.63
73 74 1.374758 CCGAGTTGCTGGTCACTCC 60.375 63.158 0.00 0.00 0.00 3.85
74 75 1.374758 CCCGAGTTGCTGGTCACTC 60.375 63.158 0.00 0.00 0.00 3.51
75 76 2.743718 CCCGAGTTGCTGGTCACT 59.256 61.111 0.00 0.00 0.00 3.41
76 77 3.050275 GCCCGAGTTGCTGGTCAC 61.050 66.667 0.00 0.00 0.00 3.67
77 78 4.680237 CGCCCGAGTTGCTGGTCA 62.680 66.667 0.00 0.00 0.00 4.02
78 79 3.665675 ATCGCCCGAGTTGCTGGTC 62.666 63.158 0.00 0.00 0.00 4.02
79 80 3.706373 ATCGCCCGAGTTGCTGGT 61.706 61.111 0.00 0.00 0.00 4.00
80 81 3.197790 CATCGCCCGAGTTGCTGG 61.198 66.667 0.00 0.00 0.00 4.85
81 82 3.197790 CCATCGCCCGAGTTGCTG 61.198 66.667 0.00 0.00 0.00 4.41
92 93 1.796796 GACAAGACTTGGCCATCGC 59.203 57.895 19.16 0.00 30.38 4.58
93 94 0.670546 ACGACAAGACTTGGCCATCG 60.671 55.000 18.49 18.49 34.26 3.84
94 95 1.079503 GACGACAAGACTTGGCCATC 58.920 55.000 19.16 11.50 34.26 3.51
95 96 0.670546 CGACGACAAGACTTGGCCAT 60.671 55.000 19.16 6.17 34.26 4.40
96 97 1.300620 CGACGACAAGACTTGGCCA 60.301 57.895 19.16 0.00 34.26 5.36
97 98 2.027625 CCGACGACAAGACTTGGCC 61.028 63.158 19.16 9.49 34.26 5.36
98 99 2.668280 GCCGACGACAAGACTTGGC 61.668 63.158 19.16 15.54 34.51 4.52
99 100 2.372690 CGCCGACGACAAGACTTGG 61.373 63.158 19.16 5.13 43.93 3.61
100 101 1.371267 TCGCCGACGACAAGACTTG 60.371 57.895 13.77 13.77 45.12 3.16
101 102 3.036577 TCGCCGACGACAAGACTT 58.963 55.556 0.00 0.00 45.12 3.01
115 116 3.747976 AATTTGGCAGCCCGTCGC 61.748 61.111 9.64 0.00 37.98 5.19
116 117 1.861542 TTCAATTTGGCAGCCCGTCG 61.862 55.000 9.64 0.00 0.00 5.12
117 118 0.532115 ATTCAATTTGGCAGCCCGTC 59.468 50.000 9.64 0.00 0.00 4.79
118 119 0.247185 CATTCAATTTGGCAGCCCGT 59.753 50.000 9.64 0.00 0.00 5.28
119 120 1.085501 GCATTCAATTTGGCAGCCCG 61.086 55.000 9.64 0.00 0.00 6.13
120 121 0.251073 AGCATTCAATTTGGCAGCCC 59.749 50.000 9.64 0.00 0.00 5.19
121 122 2.965572 TAGCATTCAATTTGGCAGCC 57.034 45.000 3.66 3.66 0.00 4.85
122 123 3.192466 CCTTAGCATTCAATTTGGCAGC 58.808 45.455 0.00 0.00 0.00 5.25
123 124 4.082081 TCACCTTAGCATTCAATTTGGCAG 60.082 41.667 0.00 0.00 0.00 4.85
124 125 3.831333 TCACCTTAGCATTCAATTTGGCA 59.169 39.130 0.00 0.00 0.00 4.92
125 126 4.082026 ACTCACCTTAGCATTCAATTTGGC 60.082 41.667 0.00 0.00 0.00 4.52
126 127 5.649782 ACTCACCTTAGCATTCAATTTGG 57.350 39.130 0.00 0.00 0.00 3.28
127 128 6.071728 AGGAACTCACCTTAGCATTCAATTTG 60.072 38.462 0.00 0.00 36.86 2.32
128 129 6.012745 AGGAACTCACCTTAGCATTCAATTT 58.987 36.000 0.00 0.00 36.86 1.82
129 130 5.574188 AGGAACTCACCTTAGCATTCAATT 58.426 37.500 0.00 0.00 36.86 2.32
130 131 5.184892 AGGAACTCACCTTAGCATTCAAT 57.815 39.130 0.00 0.00 36.86 2.57
131 132 4.640771 AGGAACTCACCTTAGCATTCAA 57.359 40.909 0.00 0.00 36.86 2.69
132 133 4.202461 ACAAGGAACTCACCTTAGCATTCA 60.202 41.667 0.00 0.00 46.94 2.57
133 134 4.327680 ACAAGGAACTCACCTTAGCATTC 58.672 43.478 0.00 0.00 46.94 2.67
134 135 4.327680 GACAAGGAACTCACCTTAGCATT 58.672 43.478 0.00 0.00 46.94 3.56
135 136 3.307762 GGACAAGGAACTCACCTTAGCAT 60.308 47.826 0.00 0.00 46.94 3.79
136 137 2.038557 GGACAAGGAACTCACCTTAGCA 59.961 50.000 0.00 0.00 46.94 3.49
137 138 2.303311 AGGACAAGGAACTCACCTTAGC 59.697 50.000 0.00 0.00 46.94 3.09
138 139 3.835395 AGAGGACAAGGAACTCACCTTAG 59.165 47.826 0.00 0.00 46.94 2.18
139 140 3.833070 GAGAGGACAAGGAACTCACCTTA 59.167 47.826 0.00 0.00 46.94 2.69
140 141 6.799799 AGGAGAGGACAAGGAACTCACCTT 62.800 50.000 4.42 0.00 45.86 3.50
141 142 2.252714 GAGAGGACAAGGAACTCACCT 58.747 52.381 0.00 0.00 38.49 4.00
142 143 1.276705 GGAGAGGACAAGGAACTCACC 59.723 57.143 0.00 0.00 38.49 4.02
143 144 2.252714 AGGAGAGGACAAGGAACTCAC 58.747 52.381 0.00 0.00 38.49 3.51
144 145 2.704190 AGGAGAGGACAAGGAACTCA 57.296 50.000 0.00 0.00 38.49 3.41
145 146 2.235155 GGAAGGAGAGGACAAGGAACTC 59.765 54.545 0.00 0.00 38.49 3.01
147 148 2.235155 GAGGAAGGAGAGGACAAGGAAC 59.765 54.545 0.00 0.00 0.00 3.62
148 149 2.112691 AGAGGAAGGAGAGGACAAGGAA 59.887 50.000 0.00 0.00 0.00 3.36
149 150 1.719378 AGAGGAAGGAGAGGACAAGGA 59.281 52.381 0.00 0.00 0.00 3.36
150 151 1.830477 CAGAGGAAGGAGAGGACAAGG 59.170 57.143 0.00 0.00 0.00 3.61
151 152 2.813907 TCAGAGGAAGGAGAGGACAAG 58.186 52.381 0.00 0.00 0.00 3.16
152 153 3.260269 TTCAGAGGAAGGAGAGGACAA 57.740 47.619 0.00 0.00 0.00 3.18
153 154 3.481559 ATTCAGAGGAAGGAGAGGACA 57.518 47.619 0.00 0.00 36.25 4.02
154 155 5.393866 AGATATTCAGAGGAAGGAGAGGAC 58.606 45.833 0.00 0.00 36.25 3.85
155 156 5.678142 AGATATTCAGAGGAAGGAGAGGA 57.322 43.478 0.00 0.00 36.25 3.71
156 157 8.434589 AATAAGATATTCAGAGGAAGGAGAGG 57.565 38.462 0.00 0.00 36.25 3.69
159 160 9.500785 GGAAAATAAGATATTCAGAGGAAGGAG 57.499 37.037 0.00 0.00 36.25 3.69
160 161 9.230477 AGGAAAATAAGATATTCAGAGGAAGGA 57.770 33.333 0.00 0.00 36.25 3.36
161 162 9.282569 CAGGAAAATAAGATATTCAGAGGAAGG 57.717 37.037 0.00 0.00 36.25 3.46
164 165 9.439461 TCTCAGGAAAATAAGATATTCAGAGGA 57.561 33.333 0.00 0.00 32.38 3.71
165 166 9.709495 CTCTCAGGAAAATAAGATATTCAGAGG 57.291 37.037 0.00 0.00 32.38 3.69
181 182 9.642343 TCTGCTAAAGTATATACTCTCAGGAAA 57.358 33.333 15.72 0.00 34.99 3.13
182 183 9.069082 GTCTGCTAAAGTATATACTCTCAGGAA 57.931 37.037 15.72 4.23 34.99 3.36
183 184 8.218488 TGTCTGCTAAAGTATATACTCTCAGGA 58.782 37.037 15.72 12.37 34.99 3.86
184 185 8.397575 TGTCTGCTAAAGTATATACTCTCAGG 57.602 38.462 15.72 6.44 34.99 3.86
185 186 8.511321 CCTGTCTGCTAAAGTATATACTCTCAG 58.489 40.741 15.72 17.23 34.99 3.35
186 187 7.448777 CCCTGTCTGCTAAAGTATATACTCTCA 59.551 40.741 15.72 10.00 34.99 3.27
187 188 7.094118 CCCCTGTCTGCTAAAGTATATACTCTC 60.094 44.444 15.72 6.34 34.99 3.20
188 189 6.722129 CCCCTGTCTGCTAAAGTATATACTCT 59.278 42.308 15.72 4.85 34.99 3.24
189 190 6.494146 ACCCCTGTCTGCTAAAGTATATACTC 59.506 42.308 15.72 4.32 34.99 2.59
190 191 6.382925 ACCCCTGTCTGCTAAAGTATATACT 58.617 40.000 9.71 9.71 38.39 2.12
191 192 6.267014 TGACCCCTGTCTGCTAAAGTATATAC 59.733 42.308 4.60 4.60 42.28 1.47
192 193 6.378745 TGACCCCTGTCTGCTAAAGTATATA 58.621 40.000 0.00 0.00 42.28 0.86
193 194 5.216622 TGACCCCTGTCTGCTAAAGTATAT 58.783 41.667 0.00 0.00 42.28 0.86
194 195 4.616553 TGACCCCTGTCTGCTAAAGTATA 58.383 43.478 0.00 0.00 42.28 1.47
195 196 3.450904 TGACCCCTGTCTGCTAAAGTAT 58.549 45.455 0.00 0.00 42.28 2.12
196 197 2.897350 TGACCCCTGTCTGCTAAAGTA 58.103 47.619 0.00 0.00 42.28 2.24
197 198 1.729586 TGACCCCTGTCTGCTAAAGT 58.270 50.000 0.00 0.00 42.28 2.66
198 199 2.859165 TTGACCCCTGTCTGCTAAAG 57.141 50.000 0.00 0.00 42.28 1.85
199 200 3.806949 ATTTGACCCCTGTCTGCTAAA 57.193 42.857 0.00 0.00 42.28 1.85
200 201 3.806949 AATTTGACCCCTGTCTGCTAA 57.193 42.857 0.00 0.00 42.28 3.09
201 202 3.073798 TGAAATTTGACCCCTGTCTGCTA 59.926 43.478 0.00 0.00 42.28 3.49
202 203 2.158475 TGAAATTTGACCCCTGTCTGCT 60.158 45.455 0.00 0.00 42.28 4.24
203 204 2.229784 CTGAAATTTGACCCCTGTCTGC 59.770 50.000 0.00 0.00 42.28 4.26
204 205 2.229784 GCTGAAATTTGACCCCTGTCTG 59.770 50.000 0.00 0.00 42.28 3.51
205 206 2.519013 GCTGAAATTTGACCCCTGTCT 58.481 47.619 0.00 0.00 42.28 3.41
206 207 1.546029 GGCTGAAATTTGACCCCTGTC 59.454 52.381 0.00 0.00 42.12 3.51
207 208 1.147817 AGGCTGAAATTTGACCCCTGT 59.852 47.619 0.00 0.00 0.00 4.00
208 209 1.928868 AGGCTGAAATTTGACCCCTG 58.071 50.000 0.00 0.00 0.00 4.45
209 210 4.337264 AATAGGCTGAAATTTGACCCCT 57.663 40.909 0.00 0.00 0.00 4.79
210 211 5.299531 GTCTAATAGGCTGAAATTTGACCCC 59.700 44.000 10.20 0.00 34.11 4.95
211 212 5.885912 TGTCTAATAGGCTGAAATTTGACCC 59.114 40.000 15.56 0.00 37.17 4.46
212 213 6.458888 GCTGTCTAATAGGCTGAAATTTGACC 60.459 42.308 15.56 0.00 37.17 4.02
213 214 6.094048 TGCTGTCTAATAGGCTGAAATTTGAC 59.906 38.462 12.95 12.95 37.93 3.18
214 215 6.179756 TGCTGTCTAATAGGCTGAAATTTGA 58.820 36.000 2.89 0.00 0.00 2.69
215 216 6.441093 TGCTGTCTAATAGGCTGAAATTTG 57.559 37.500 2.89 0.00 0.00 2.32
216 217 8.752005 TTATGCTGTCTAATAGGCTGAAATTT 57.248 30.769 2.89 0.00 0.00 1.82
217 218 8.752005 TTTATGCTGTCTAATAGGCTGAAATT 57.248 30.769 2.89 0.00 0.00 1.82
218 219 8.752005 TTTTATGCTGTCTAATAGGCTGAAAT 57.248 30.769 2.89 0.00 0.00 2.17
219 220 8.574251 TTTTTATGCTGTCTAATAGGCTGAAA 57.426 30.769 2.89 0.00 0.00 2.69
220 221 8.752005 ATTTTTATGCTGTCTAATAGGCTGAA 57.248 30.769 2.89 0.00 0.00 3.02
221 222 8.623903 CAATTTTTATGCTGTCTAATAGGCTGA 58.376 33.333 2.89 0.00 0.00 4.26
222 223 8.623903 TCAATTTTTATGCTGTCTAATAGGCTG 58.376 33.333 0.00 0.00 0.00 4.85
223 224 8.752005 TCAATTTTTATGCTGTCTAATAGGCT 57.248 30.769 0.00 0.00 0.00 4.58
224 225 9.971922 ATTCAATTTTTATGCTGTCTAATAGGC 57.028 29.630 0.00 0.00 0.00 3.93
231 232 9.985730 TCAAAAGATTCAATTTTTATGCTGTCT 57.014 25.926 0.00 0.00 0.00 3.41
233 234 9.985730 TCTCAAAAGATTCAATTTTTATGCTGT 57.014 25.926 0.00 0.00 0.00 4.40
243 244 8.462016 CGGTTAAGGATCTCAAAAGATTCAATT 58.538 33.333 0.00 0.00 42.46 2.32
244 245 7.067494 CCGGTTAAGGATCTCAAAAGATTCAAT 59.933 37.037 0.00 0.00 42.46 2.57
245 246 6.374333 CCGGTTAAGGATCTCAAAAGATTCAA 59.626 38.462 0.00 0.00 42.46 2.69
246 247 5.880332 CCGGTTAAGGATCTCAAAAGATTCA 59.120 40.000 0.00 0.00 42.46 2.57
247 248 5.880887 ACCGGTTAAGGATCTCAAAAGATTC 59.119 40.000 0.00 0.00 42.46 2.52
248 249 5.816682 ACCGGTTAAGGATCTCAAAAGATT 58.183 37.500 0.00 0.00 42.46 2.40
249 250 5.045869 TGACCGGTTAAGGATCTCAAAAGAT 60.046 40.000 9.42 0.00 45.16 2.40
250 251 4.285003 TGACCGGTTAAGGATCTCAAAAGA 59.715 41.667 9.42 0.00 33.26 2.52
251 252 4.575885 TGACCGGTTAAGGATCTCAAAAG 58.424 43.478 9.42 0.00 34.73 2.27
252 253 4.627284 TGACCGGTTAAGGATCTCAAAA 57.373 40.909 9.42 0.00 34.73 2.44
253 254 4.627284 TTGACCGGTTAAGGATCTCAAA 57.373 40.909 9.42 0.00 34.73 2.69
254 255 4.627284 TTTGACCGGTTAAGGATCTCAA 57.373 40.909 9.42 1.34 34.73 3.02
255 256 4.837093 ATTTGACCGGTTAAGGATCTCA 57.163 40.909 9.42 0.00 34.73 3.27
256 257 6.510879 AAAATTTGACCGGTTAAGGATCTC 57.489 37.500 9.42 0.00 34.73 2.75
257 258 7.173032 ACTAAAATTTGACCGGTTAAGGATCT 58.827 34.615 9.42 0.00 34.73 2.75
258 259 7.336176 AGACTAAAATTTGACCGGTTAAGGATC 59.664 37.037 9.42 3.29 34.73 3.36
259 260 7.173032 AGACTAAAATTTGACCGGTTAAGGAT 58.827 34.615 9.42 0.00 34.73 3.24
260 261 6.536447 AGACTAAAATTTGACCGGTTAAGGA 58.464 36.000 9.42 0.00 34.73 3.36
261 262 6.812879 AGACTAAAATTTGACCGGTTAAGG 57.187 37.500 9.42 1.09 37.30 2.69
262 263 9.603298 GTAAAGACTAAAATTTGACCGGTTAAG 57.397 33.333 9.42 0.00 0.00 1.85
263 264 9.341078 AGTAAAGACTAAAATTTGACCGGTTAA 57.659 29.630 9.42 8.56 32.65 2.01
264 265 8.907222 AGTAAAGACTAAAATTTGACCGGTTA 57.093 30.769 9.42 0.00 32.65 2.85
265 266 7.812690 AGTAAAGACTAAAATTTGACCGGTT 57.187 32.000 9.42 0.00 32.65 4.44
266 267 7.812690 AAGTAAAGACTAAAATTTGACCGGT 57.187 32.000 6.92 6.92 33.58 5.28
267 268 9.603298 GTTAAGTAAAGACTAAAATTTGACCGG 57.397 33.333 0.00 0.00 33.58 5.28
268 269 9.603298 GGTTAAGTAAAGACTAAAATTTGACCG 57.397 33.333 0.00 0.00 33.58 4.79
269 270 9.603298 CGGTTAAGTAAAGACTAAAATTTGACC 57.397 33.333 0.00 0.00 33.58 4.02
277 278 9.635520 CAGAAGATCGGTTAAGTAAAGACTAAA 57.364 33.333 0.00 0.00 33.58 1.85
278 279 8.800332 ACAGAAGATCGGTTAAGTAAAGACTAA 58.200 33.333 0.00 0.00 33.58 2.24
279 280 8.345724 ACAGAAGATCGGTTAAGTAAAGACTA 57.654 34.615 0.00 0.00 33.58 2.59
280 281 7.229581 ACAGAAGATCGGTTAAGTAAAGACT 57.770 36.000 0.00 0.00 37.59 3.24
281 282 7.886405 AACAGAAGATCGGTTAAGTAAAGAC 57.114 36.000 0.00 0.00 33.18 3.01
282 283 8.897872 AAAACAGAAGATCGGTTAAGTAAAGA 57.102 30.769 0.00 0.00 33.80 2.52
283 284 8.770828 TGAAAACAGAAGATCGGTTAAGTAAAG 58.229 33.333 0.00 0.00 33.80 1.85
284 285 8.665643 TGAAAACAGAAGATCGGTTAAGTAAA 57.334 30.769 0.00 0.00 33.80 2.01
285 286 8.145767 TCTGAAAACAGAAGATCGGTTAAGTAA 58.854 33.333 0.00 0.00 33.80 2.24
286 287 7.663827 TCTGAAAACAGAAGATCGGTTAAGTA 58.336 34.615 0.00 0.00 33.80 2.24
287 288 6.522054 TCTGAAAACAGAAGATCGGTTAAGT 58.478 36.000 0.00 0.00 33.80 2.24
288 289 6.868864 TCTCTGAAAACAGAAGATCGGTTAAG 59.131 38.462 0.00 0.00 33.80 1.85
289 290 6.755206 TCTCTGAAAACAGAAGATCGGTTAA 58.245 36.000 0.00 0.00 33.80 2.01
290 291 6.208797 TCTCTCTGAAAACAGAAGATCGGTTA 59.791 38.462 0.00 0.00 33.80 2.85
291 292 5.011125 TCTCTCTGAAAACAGAAGATCGGTT 59.989 40.000 0.00 0.00 36.37 4.44
292 293 4.524714 TCTCTCTGAAAACAGAAGATCGGT 59.475 41.667 0.00 0.00 0.00 4.69
293 294 5.065704 TCTCTCTGAAAACAGAAGATCGG 57.934 43.478 0.00 0.00 0.00 4.18
294 295 5.347364 GGTTCTCTCTGAAAACAGAAGATCG 59.653 44.000 0.00 0.00 36.30 3.69
295 296 5.641636 GGGTTCTCTCTGAAAACAGAAGATC 59.358 44.000 0.00 0.00 36.30 2.75
296 297 5.309282 AGGGTTCTCTCTGAAAACAGAAGAT 59.691 40.000 0.00 0.00 36.30 2.40
297 298 4.656112 AGGGTTCTCTCTGAAAACAGAAGA 59.344 41.667 0.00 0.00 36.30 2.87
298 299 4.967036 AGGGTTCTCTCTGAAAACAGAAG 58.033 43.478 0.00 0.00 36.30 2.85
299 300 5.373812 AAGGGTTCTCTCTGAAAACAGAA 57.626 39.130 0.00 0.00 36.30 3.02
300 301 5.373812 AAAGGGTTCTCTCTGAAAACAGA 57.626 39.130 0.00 0.00 36.30 3.41
336 337 9.630098 GCAAATTTTCAACTTTGATCAGATCTA 57.370 29.630 11.83 0.93 37.00 1.98
337 338 8.145767 TGCAAATTTTCAACTTTGATCAGATCT 58.854 29.630 11.83 0.00 37.00 2.75
338 339 8.219105 GTGCAAATTTTCAACTTTGATCAGATC 58.781 33.333 3.11 3.11 37.00 2.75
339 340 7.929785 AGTGCAAATTTTCAACTTTGATCAGAT 59.070 29.630 6.56 0.00 37.00 2.90
340 341 7.223193 CAGTGCAAATTTTCAACTTTGATCAGA 59.777 33.333 6.56 0.00 37.00 3.27
341 342 7.223193 TCAGTGCAAATTTTCAACTTTGATCAG 59.777 33.333 6.56 0.00 37.00 2.90
342 343 7.040494 TCAGTGCAAATTTTCAACTTTGATCA 58.960 30.769 6.56 0.00 37.00 2.92
343 344 7.467557 TCAGTGCAAATTTTCAACTTTGATC 57.532 32.000 6.56 0.00 37.00 2.92
344 345 7.846644 TTCAGTGCAAATTTTCAACTTTGAT 57.153 28.000 6.56 0.00 37.00 2.57
345 346 7.548427 TGATTCAGTGCAAATTTTCAACTTTGA 59.452 29.630 6.56 0.00 34.93 2.69
346 347 7.686519 TGATTCAGTGCAAATTTTCAACTTTG 58.313 30.769 0.00 0.00 35.84 2.77
347 348 7.846644 TGATTCAGTGCAAATTTTCAACTTT 57.153 28.000 0.00 0.00 0.00 2.66
348 349 7.846644 TTGATTCAGTGCAAATTTTCAACTT 57.153 28.000 0.00 0.00 0.00 2.66
349 350 7.846644 TTTGATTCAGTGCAAATTTTCAACT 57.153 28.000 0.00 0.00 0.00 3.16
350 351 9.505995 AATTTTGATTCAGTGCAAATTTTCAAC 57.494 25.926 0.00 0.00 34.36 3.18
356 357 9.715121 AGATGTAATTTTGATTCAGTGCAAATT 57.285 25.926 10.19 10.19 34.36 1.82
357 358 9.715121 AAGATGTAATTTTGATTCAGTGCAAAT 57.285 25.926 0.00 0.00 34.36 2.32
358 359 9.545105 AAAGATGTAATTTTGATTCAGTGCAAA 57.455 25.926 0.00 0.00 32.63 3.68
359 360 8.980610 CAAAGATGTAATTTTGATTCAGTGCAA 58.019 29.630 0.00 0.00 36.61 4.08
360 361 8.358895 TCAAAGATGTAATTTTGATTCAGTGCA 58.641 29.630 0.00 0.00 38.12 4.57
361 362 8.746922 TCAAAGATGTAATTTTGATTCAGTGC 57.253 30.769 0.00 0.00 38.12 4.40
396 397 9.283768 TCAGACTAGATTTTATTTGTGCAGAAA 57.716 29.630 11.84 11.84 0.00 2.52
397 398 8.846943 TCAGACTAGATTTTATTTGTGCAGAA 57.153 30.769 0.00 0.00 0.00 3.02
398 399 9.453572 AATCAGACTAGATTTTATTTGTGCAGA 57.546 29.630 0.00 0.00 34.70 4.26
431 432 8.860088 ACTACTGCTTATTGGAAATTGTTTCTT 58.140 29.630 2.84 0.00 39.59 2.52
432 433 8.409358 ACTACTGCTTATTGGAAATTGTTTCT 57.591 30.769 2.84 0.00 39.59 2.52
433 434 8.915654 CAACTACTGCTTATTGGAAATTGTTTC 58.084 33.333 0.00 0.00 38.94 2.78
434 435 8.421002 ACAACTACTGCTTATTGGAAATTGTTT 58.579 29.630 0.00 0.00 0.00 2.83
435 436 7.951591 ACAACTACTGCTTATTGGAAATTGTT 58.048 30.769 0.00 0.00 0.00 2.83
436 437 7.524717 ACAACTACTGCTTATTGGAAATTGT 57.475 32.000 0.00 0.00 0.00 2.71
437 438 8.702438 CAAACAACTACTGCTTATTGGAAATTG 58.298 33.333 0.00 0.00 0.00 2.32
438 439 8.421002 ACAAACAACTACTGCTTATTGGAAATT 58.579 29.630 0.00 0.00 0.00 1.82
439 440 7.951591 ACAAACAACTACTGCTTATTGGAAAT 58.048 30.769 0.00 0.00 0.00 2.17
440 441 7.341445 ACAAACAACTACTGCTTATTGGAAA 57.659 32.000 0.00 0.00 0.00 3.13
441 442 6.952773 ACAAACAACTACTGCTTATTGGAA 57.047 33.333 0.00 0.00 0.00 3.53
442 443 6.952773 AACAAACAACTACTGCTTATTGGA 57.047 33.333 0.00 0.00 0.00 3.53
443 444 8.419076 AAAAACAAACAACTACTGCTTATTGG 57.581 30.769 0.00 0.00 0.00 3.16
444 445 9.301153 AGAAAAACAAACAACTACTGCTTATTG 57.699 29.630 0.00 0.00 0.00 1.90
445 446 9.869757 AAGAAAAACAAACAACTACTGCTTATT 57.130 25.926 0.00 0.00 0.00 1.40
446 447 9.869757 AAAGAAAAACAAACAACTACTGCTTAT 57.130 25.926 0.00 0.00 0.00 1.73
448 449 9.869757 ATAAAGAAAAACAAACAACTACTGCTT 57.130 25.926 0.00 0.00 0.00 3.91
500 501 9.790389 ACTTTGATTTTTGTCGTGTTGTTATAA 57.210 25.926 0.00 0.00 0.00 0.98
501 502 9.790389 AACTTTGATTTTTGTCGTGTTGTTATA 57.210 25.926 0.00 0.00 0.00 0.98
502 503 8.696410 AACTTTGATTTTTGTCGTGTTGTTAT 57.304 26.923 0.00 0.00 0.00 1.89
503 504 8.522178 AAACTTTGATTTTTGTCGTGTTGTTA 57.478 26.923 0.00 0.00 0.00 2.41
504 505 7.414814 AAACTTTGATTTTTGTCGTGTTGTT 57.585 28.000 0.00 0.00 0.00 2.83
505 506 7.810759 ACTAAACTTTGATTTTTGTCGTGTTGT 59.189 29.630 0.00 0.00 0.00 3.32
506 507 8.168681 ACTAAACTTTGATTTTTGTCGTGTTG 57.831 30.769 0.00 0.00 0.00 3.33
507 508 8.751302 AACTAAACTTTGATTTTTGTCGTGTT 57.249 26.923 0.00 0.00 0.00 3.32
524 525 9.924650 ACAAAGACGATTACTGATAACTAAACT 57.075 29.630 0.00 0.00 0.00 2.66
542 543 9.931210 ACTCTGAAAGTAAAATAAACAAAGACG 57.069 29.630 0.00 0.00 36.07 4.18
547 548 8.846211 CCCAGACTCTGAAAGTAAAATAAACAA 58.154 33.333 7.69 0.00 38.74 2.83
548 549 7.996644 ACCCAGACTCTGAAAGTAAAATAAACA 59.003 33.333 7.69 0.00 38.74 2.83
549 550 8.290325 CACCCAGACTCTGAAAGTAAAATAAAC 58.710 37.037 7.69 0.00 38.74 2.01
550 551 7.996644 ACACCCAGACTCTGAAAGTAAAATAAA 59.003 33.333 7.69 0.00 38.74 1.40
551 552 7.514721 ACACCCAGACTCTGAAAGTAAAATAA 58.485 34.615 7.69 0.00 38.74 1.40
552 553 7.016268 AGACACCCAGACTCTGAAAGTAAAATA 59.984 37.037 7.69 0.00 38.74 1.40
553 554 5.941788 ACACCCAGACTCTGAAAGTAAAAT 58.058 37.500 7.69 0.00 38.74 1.82
554 555 5.130477 AGACACCCAGACTCTGAAAGTAAAA 59.870 40.000 7.69 0.00 38.74 1.52
555 556 4.654262 AGACACCCAGACTCTGAAAGTAAA 59.346 41.667 7.69 0.00 38.74 2.01
556 557 4.039245 CAGACACCCAGACTCTGAAAGTAA 59.961 45.833 7.69 0.00 38.74 2.24
557 558 3.574396 CAGACACCCAGACTCTGAAAGTA 59.426 47.826 7.69 0.00 38.74 2.24
558 559 2.366916 CAGACACCCAGACTCTGAAAGT 59.633 50.000 7.69 2.69 42.42 2.66
559 560 2.630098 TCAGACACCCAGACTCTGAAAG 59.370 50.000 7.69 0.00 37.97 2.62
560 561 2.677914 TCAGACACCCAGACTCTGAAA 58.322 47.619 7.69 0.00 37.97 2.69
561 562 2.381752 TCAGACACCCAGACTCTGAA 57.618 50.000 7.69 0.00 37.97 3.02
562 563 2.612285 ATCAGACACCCAGACTCTGA 57.388 50.000 7.69 0.00 43.49 3.27
563 564 2.428890 GGTATCAGACACCCAGACTCTG 59.571 54.545 0.00 0.00 33.94 3.35
564 565 2.043115 TGGTATCAGACACCCAGACTCT 59.957 50.000 0.00 0.00 34.99 3.24
652 653 8.514330 ACAAATAAGAGTTTGTTCCACACTAA 57.486 30.769 0.00 0.00 46.96 2.24
663 664 6.680810 TGGCATCAAGACAAATAAGAGTTTG 58.319 36.000 0.00 0.00 43.11 2.93
690 693 3.399330 TCAACTTTCTTACCCTTCTGCG 58.601 45.455 0.00 0.00 0.00 5.18
700 703 4.433615 CGCTGAGCCTATCAACTTTCTTA 58.566 43.478 0.00 0.00 37.52 2.10
737 792 1.032657 CCACCGTCTCGAGAGGATGT 61.033 60.000 31.23 20.34 32.08 3.06
847 908 2.298411 GCATTGATGCGGACCAATTT 57.702 45.000 0.00 0.00 44.67 1.82
1022 1086 5.119931 TGTCATAACACTGAATTTGGCAC 57.880 39.130 0.00 0.00 0.00 5.01
1075 1142 3.624861 GTCGCAAAGGTGATCAGATCATT 59.375 43.478 16.37 4.97 42.04 2.57
1091 1158 5.347342 AGAACAACATGAAATTTGTCGCAA 58.653 33.333 0.00 0.00 34.82 4.85
1097 1164 7.041644 AGGCATCAAAGAACAACATGAAATTTG 60.042 33.333 0.00 0.00 0.00 2.32
1332 1402 0.398318 GTTGAGGGAGCCACTTCAGT 59.602 55.000 0.00 0.00 0.00 3.41
1379 1449 4.520111 TGAACAGTGGATCTTGGAATTGTG 59.480 41.667 0.00 0.00 0.00 3.33
1458 1530 4.116961 CACTTAAGAACACCGTCTTGTCA 58.883 43.478 10.09 0.00 38.33 3.58
1511 1583 7.148755 CCTTTTCAGAATTAAATGCCAACTTCG 60.149 37.037 0.00 0.00 0.00 3.79
1717 1795 7.415541 GCAGCTTCAAGAATATACATTGTCCAA 60.416 37.037 0.00 0.00 0.00 3.53
1942 2831 5.013547 TCTTCTTTCCTCTTCGTCTCATCT 58.986 41.667 0.00 0.00 0.00 2.90
2269 3167 1.133976 GCTAGATGACCAGGCCACATT 60.134 52.381 5.01 0.00 0.00 2.71
2273 3171 0.991146 TTTGCTAGATGACCAGGCCA 59.009 50.000 5.01 0.00 0.00 5.36
2341 3239 1.234615 GCACCTTTTAGCCTCACGCA 61.235 55.000 0.00 0.00 41.38 5.24
2342 3240 0.955919 AGCACCTTTTAGCCTCACGC 60.956 55.000 0.00 0.00 37.98 5.34
2343 3241 0.798776 CAGCACCTTTTAGCCTCACG 59.201 55.000 0.00 0.00 0.00 4.35
2360 3262 7.169308 ACAACACTTCGACTACTGTAAAATCAG 59.831 37.037 0.00 0.00 40.80 2.90
2377 3295 7.259290 TCTCAACCAAAGATAACAACACTTC 57.741 36.000 0.00 0.00 0.00 3.01
2441 3412 9.486123 AGTCTATACTATCCTCCATACGTAGTA 57.514 37.037 0.08 0.00 40.39 1.82
2442 3413 8.378115 AGTCTATACTATCCTCCATACGTAGT 57.622 38.462 0.08 0.00 38.45 2.73
2443 3414 9.100554 CAAGTCTATACTATCCTCCATACGTAG 57.899 40.741 0.08 0.00 33.75 3.51
2444 3415 8.600668 ACAAGTCTATACTATCCTCCATACGTA 58.399 37.037 0.00 0.00 33.75 3.57
2445 3416 7.460071 ACAAGTCTATACTATCCTCCATACGT 58.540 38.462 0.00 0.00 33.75 3.57
2446 3417 7.925043 ACAAGTCTATACTATCCTCCATACG 57.075 40.000 0.00 0.00 33.75 3.06
2447 3418 8.030106 GCAACAAGTCTATACTATCCTCCATAC 58.970 40.741 0.00 0.00 33.75 2.39
2457 3428 8.074613 ACCAACATAGCAACAAGTCTATACTA 57.925 34.615 0.00 0.00 33.75 1.82
2460 3431 9.325198 CATAACCAACATAGCAACAAGTCTATA 57.675 33.333 0.00 0.00 0.00 1.31
2463 3434 5.415701 CCATAACCAACATAGCAACAAGTCT 59.584 40.000 0.00 0.00 0.00 3.24
2465 3436 5.076873 ACCATAACCAACATAGCAACAAGT 58.923 37.500 0.00 0.00 0.00 3.16
2519 3527 2.094700 TCTCGACTAGCAGTTTCGCATT 60.095 45.455 0.00 0.00 32.70 3.56
2535 3543 2.837591 TCCATGAGGTTTGGAATCTCGA 59.162 45.455 0.00 0.00 40.29 4.04
2555 3563 5.350365 TGTGTGTGTTCTCTGTTAGTTGTTC 59.650 40.000 0.00 0.00 0.00 3.18
2843 6837 2.412089 GTGATGTACGCACCTGAAGTTC 59.588 50.000 7.28 0.00 0.00 3.01
2856 6850 1.993370 GGTCTCGCACTTGTGATGTAC 59.007 52.381 4.79 0.00 33.67 2.90
2911 6905 6.256321 CACAGGACAAAACATTCTCCTTTTTG 59.744 38.462 4.83 4.83 43.07 2.44
2946 6964 3.278574 ACCATTTGTCACATCGGTATGG 58.721 45.455 0.00 0.00 37.43 2.74
2947 6965 4.394610 TCAACCATTTGTCACATCGGTATG 59.605 41.667 0.00 0.00 35.27 2.39
3017 7045 5.757886 TGAGAAAACCTAGAAAATGTTGCG 58.242 37.500 0.00 0.00 0.00 4.85
3073 7101 4.102524 TCACACTATTCAGGTTTGGTGTCT 59.897 41.667 0.00 0.00 36.04 3.41
3076 7104 4.133820 TGTCACACTATTCAGGTTTGGTG 58.866 43.478 0.00 0.00 0.00 4.17
3087 7115 8.950210 GCATATATATGGCTTTGTCACACTATT 58.050 33.333 21.50 0.00 34.32 1.73
3088 7116 8.498054 GCATATATATGGCTTTGTCACACTAT 57.502 34.615 21.50 0.00 34.32 2.12
3090 7118 6.808008 GCATATATATGGCTTTGTCACACT 57.192 37.500 21.50 0.00 34.32 3.55
3102 7130 6.649973 GCATGCTCTTAGAGGCATATATATGG 59.350 42.308 21.50 5.87 45.82 2.74
3103 7131 6.649973 GGCATGCTCTTAGAGGCATATATATG 59.350 42.308 18.92 17.01 45.82 1.78
3104 7132 6.518032 CGGCATGCTCTTAGAGGCATATATAT 60.518 42.308 18.92 0.00 45.82 0.86
3105 7133 5.221322 CGGCATGCTCTTAGAGGCATATATA 60.221 44.000 18.92 0.00 45.82 0.86
3106 7134 4.442612 CGGCATGCTCTTAGAGGCATATAT 60.443 45.833 18.92 0.00 45.82 0.86
3107 7135 3.118992 CGGCATGCTCTTAGAGGCATATA 60.119 47.826 18.92 0.00 45.82 0.86
3140 7168 0.611714 TTTCCTAGTTCTGACGGGGC 59.388 55.000 0.00 0.00 0.00 5.80
3146 7174 3.412386 GCTGGCTTTTTCCTAGTTCTGA 58.588 45.455 0.00 0.00 0.00 3.27
3153 7181 0.960364 CTGGCGCTGGCTTTTTCCTA 60.960 55.000 7.64 0.00 39.81 2.94
3187 7215 5.088739 GCAGTTCCGATTCAACATTTGTAG 58.911 41.667 0.00 0.00 0.00 2.74
3188 7216 4.083003 GGCAGTTCCGATTCAACATTTGTA 60.083 41.667 0.00 0.00 0.00 2.41
3189 7217 3.305335 GGCAGTTCCGATTCAACATTTGT 60.305 43.478 0.00 0.00 0.00 2.83
3214 7242 5.221283 CCTCTTCCTAAATCCTAGACGTTCC 60.221 48.000 0.00 0.00 0.00 3.62
3215 7243 5.736777 GCCTCTTCCTAAATCCTAGACGTTC 60.737 48.000 0.00 0.00 0.00 3.95
3216 7244 4.099727 GCCTCTTCCTAAATCCTAGACGTT 59.900 45.833 0.00 0.00 0.00 3.99
3217 7245 3.637694 GCCTCTTCCTAAATCCTAGACGT 59.362 47.826 0.00 0.00 0.00 4.34
3218 7246 3.637229 TGCCTCTTCCTAAATCCTAGACG 59.363 47.826 0.00 0.00 0.00 4.18
3219 7247 4.039852 CCTGCCTCTTCCTAAATCCTAGAC 59.960 50.000 0.00 0.00 0.00 2.59
3220 7248 4.227197 CCTGCCTCTTCCTAAATCCTAGA 58.773 47.826 0.00 0.00 0.00 2.43
3221 7249 3.326297 CCCTGCCTCTTCCTAAATCCTAG 59.674 52.174 0.00 0.00 0.00 3.02
3222 7250 3.318313 CCCTGCCTCTTCCTAAATCCTA 58.682 50.000 0.00 0.00 0.00 2.94
3223 7251 2.131023 CCCTGCCTCTTCCTAAATCCT 58.869 52.381 0.00 0.00 0.00 3.24
3224 7252 1.477740 GCCCTGCCTCTTCCTAAATCC 60.478 57.143 0.00 0.00 0.00 3.01
3225 7253 1.477740 GGCCCTGCCTCTTCCTAAATC 60.478 57.143 0.00 0.00 46.69 2.17
3226 7254 0.553333 GGCCCTGCCTCTTCCTAAAT 59.447 55.000 0.00 0.00 46.69 1.40
3227 7255 1.999346 GGCCCTGCCTCTTCCTAAA 59.001 57.895 0.00 0.00 46.69 1.85
3228 7256 3.741325 GGCCCTGCCTCTTCCTAA 58.259 61.111 0.00 0.00 46.69 2.69
3238 7266 3.368571 GAGCAACAGTGGCCCTGC 61.369 66.667 18.07 10.91 45.68 4.85
3243 7271 4.374702 CACGCGAGCAACAGTGGC 62.375 66.667 15.93 0.00 0.00 5.01
3244 7272 2.943345 GACACGCGAGCAACAGTGG 61.943 63.158 15.93 0.00 38.78 4.00
3245 7273 2.237066 TGACACGCGAGCAACAGTG 61.237 57.895 15.93 0.00 40.17 3.66
3246 7274 2.106131 TGACACGCGAGCAACAGT 59.894 55.556 15.93 0.00 0.00 3.55
3247 7275 1.951130 AGTGACACGCGAGCAACAG 60.951 57.895 15.93 0.00 0.00 3.16
3248 7276 2.106131 AGTGACACGCGAGCAACA 59.894 55.556 15.93 3.62 0.00 3.33
3249 7277 0.937699 TACAGTGACACGCGAGCAAC 60.938 55.000 15.93 7.15 0.00 4.17
3250 7278 0.663269 CTACAGTGACACGCGAGCAA 60.663 55.000 15.93 0.00 0.00 3.91
3251 7279 1.081442 CTACAGTGACACGCGAGCA 60.081 57.895 15.93 4.65 0.00 4.26
3252 7280 1.801913 CCTACAGTGACACGCGAGC 60.802 63.158 15.93 1.51 0.00 5.03
3253 7281 0.039437 AACCTACAGTGACACGCGAG 60.039 55.000 15.93 7.88 0.00 5.03
3254 7282 0.318360 CAACCTACAGTGACACGCGA 60.318 55.000 15.93 0.00 0.00 5.87
3255 7283 1.886861 GCAACCTACAGTGACACGCG 61.887 60.000 3.53 3.53 0.00 6.01
3256 7284 0.600255 AGCAACCTACAGTGACACGC 60.600 55.000 0.00 0.00 0.00 5.34
3257 7285 1.419374 GAGCAACCTACAGTGACACG 58.581 55.000 0.00 0.00 0.00 4.49
3258 7286 1.000607 TCGAGCAACCTACAGTGACAC 60.001 52.381 0.00 0.00 0.00 3.67
3259 7287 1.324383 TCGAGCAACCTACAGTGACA 58.676 50.000 0.00 0.00 0.00 3.58
3260 7288 2.263077 CATCGAGCAACCTACAGTGAC 58.737 52.381 0.00 0.00 0.00 3.67
3261 7289 1.893137 ACATCGAGCAACCTACAGTGA 59.107 47.619 0.00 0.00 0.00 3.41
3262 7290 1.995484 CACATCGAGCAACCTACAGTG 59.005 52.381 0.00 0.00 0.00 3.66
3263 7291 1.673033 GCACATCGAGCAACCTACAGT 60.673 52.381 0.00 0.00 0.00 3.55
3264 7292 1.002366 GCACATCGAGCAACCTACAG 58.998 55.000 0.00 0.00 0.00 2.74
3265 7293 0.608130 AGCACATCGAGCAACCTACA 59.392 50.000 0.00 0.00 0.00 2.74
3266 7294 1.726853 AAGCACATCGAGCAACCTAC 58.273 50.000 0.00 0.00 0.00 3.18
3267 7295 2.472695 AAAGCACATCGAGCAACCTA 57.527 45.000 0.00 0.00 0.00 3.08
3268 7296 1.609208 AAAAGCACATCGAGCAACCT 58.391 45.000 0.00 0.00 0.00 3.50
3269 7297 2.422276 AAAAAGCACATCGAGCAACC 57.578 45.000 0.00 0.00 0.00 3.77
3291 7319 9.716507 CAGTGAAAAGAAATAAAAGAGAACGAA 57.283 29.630 0.00 0.00 0.00 3.85
3292 7320 8.342634 CCAGTGAAAAGAAATAAAAGAGAACGA 58.657 33.333 0.00 0.00 0.00 3.85
3293 7321 8.129211 ACCAGTGAAAAGAAATAAAAGAGAACG 58.871 33.333 0.00 0.00 0.00 3.95
3294 7322 9.803315 AACCAGTGAAAAGAAATAAAAGAGAAC 57.197 29.630 0.00 0.00 0.00 3.01
3301 7329 9.296400 CGAAGAAAACCAGTGAAAAGAAATAAA 57.704 29.630 0.00 0.00 0.00 1.40
3302 7330 7.918562 CCGAAGAAAACCAGTGAAAAGAAATAA 59.081 33.333 0.00 0.00 0.00 1.40
3303 7331 7.422399 CCGAAGAAAACCAGTGAAAAGAAATA 58.578 34.615 0.00 0.00 0.00 1.40
3304 7332 6.273071 CCGAAGAAAACCAGTGAAAAGAAAT 58.727 36.000 0.00 0.00 0.00 2.17
3305 7333 5.393678 CCCGAAGAAAACCAGTGAAAAGAAA 60.394 40.000 0.00 0.00 0.00 2.52
3306 7334 4.097286 CCCGAAGAAAACCAGTGAAAAGAA 59.903 41.667 0.00 0.00 0.00 2.52
3307 7335 3.630312 CCCGAAGAAAACCAGTGAAAAGA 59.370 43.478 0.00 0.00 0.00 2.52
3308 7336 3.243401 CCCCGAAGAAAACCAGTGAAAAG 60.243 47.826 0.00 0.00 0.00 2.27
3309 7337 2.691011 CCCCGAAGAAAACCAGTGAAAA 59.309 45.455 0.00 0.00 0.00 2.29
3310 7338 2.303175 CCCCGAAGAAAACCAGTGAAA 58.697 47.619 0.00 0.00 0.00 2.69
3311 7339 1.213430 ACCCCGAAGAAAACCAGTGAA 59.787 47.619 0.00 0.00 0.00 3.18
3312 7340 0.841289 ACCCCGAAGAAAACCAGTGA 59.159 50.000 0.00 0.00 0.00 3.41
3313 7341 1.687563 AACCCCGAAGAAAACCAGTG 58.312 50.000 0.00 0.00 0.00 3.66
3314 7342 2.447408 AAACCCCGAAGAAAACCAGT 57.553 45.000 0.00 0.00 0.00 4.00
3315 7343 2.035449 GGAAAACCCCGAAGAAAACCAG 59.965 50.000 0.00 0.00 0.00 4.00
3316 7344 2.033372 GGAAAACCCCGAAGAAAACCA 58.967 47.619 0.00 0.00 0.00 3.67
3317 7345 2.313317 AGGAAAACCCCGAAGAAAACC 58.687 47.619 0.00 0.00 34.66 3.27
3318 7346 4.395959 AAAGGAAAACCCCGAAGAAAAC 57.604 40.909 0.00 0.00 34.66 2.43
3319 7347 4.440387 CGAAAAGGAAAACCCCGAAGAAAA 60.440 41.667 0.00 0.00 34.66 2.29
3320 7348 3.067040 CGAAAAGGAAAACCCCGAAGAAA 59.933 43.478 0.00 0.00 34.66 2.52
3321 7349 2.619646 CGAAAAGGAAAACCCCGAAGAA 59.380 45.455 0.00 0.00 34.66 2.52
3322 7350 2.223745 CGAAAAGGAAAACCCCGAAGA 58.776 47.619 0.00 0.00 34.66 2.87
3323 7351 1.951602 ACGAAAAGGAAAACCCCGAAG 59.048 47.619 0.00 0.00 34.66 3.79
3324 7352 2.055684 ACGAAAAGGAAAACCCCGAA 57.944 45.000 0.00 0.00 34.66 4.30
3325 7353 2.055684 AACGAAAAGGAAAACCCCGA 57.944 45.000 0.00 0.00 34.66 5.14
3326 7354 2.861335 CAAAACGAAAAGGAAAACCCCG 59.139 45.455 0.00 0.00 34.66 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.