Multiple sequence alignment - TraesCS6B01G451900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G451900 chr6B 100.000 4436 0 0 1 4436 710643945 710639510 0.000000e+00 8192
1 TraesCS6B01G451900 chr6B 87.395 1904 170 22 1486 3373 711359891 711361740 0.000000e+00 2122
2 TraesCS6B01G451900 chr6B 81.744 1353 201 28 1823 3150 711756442 711757773 0.000000e+00 1088
3 TraesCS6B01G451900 chr6B 83.419 971 144 13 1822 2787 711333452 711332494 0.000000e+00 885
4 TraesCS6B01G451900 chr6B 81.903 967 149 19 1830 2787 710683591 710682642 0.000000e+00 793
5 TraesCS6B01G451900 chr6B 88.204 568 54 7 3863 4421 98829287 98828724 0.000000e+00 665
6 TraesCS6B01G451900 chr6B 87.209 602 43 9 3865 4436 120650596 120651193 0.000000e+00 654
7 TraesCS6B01G451900 chr6B 81.616 718 75 17 3768 4436 31678749 31678040 3.900000e-150 542
8 TraesCS6B01G451900 chr6B 83.978 543 49 24 399 912 711238106 711237573 1.850000e-133 486
9 TraesCS6B01G451900 chr6B 84.742 426 32 20 494 916 711709309 711709704 3.220000e-106 396
10 TraesCS6B01G451900 chr6B 86.984 315 33 6 3106 3414 711473735 711474047 9.130000e-92 348
11 TraesCS6B01G451900 chr6B 81.892 370 35 11 3769 4107 153397659 153397291 2.610000e-72 283
12 TraesCS6B01G451900 chr6B 92.021 188 14 1 724 911 711876955 711877141 3.400000e-66 263
13 TraesCS6B01G451900 chr6B 83.521 267 22 11 928 1192 711362928 711362682 3.450000e-56 230
14 TraesCS6B01G451900 chr6B 87.317 205 15 6 1 200 711238545 711238347 1.610000e-54 224
15 TraesCS6B01G451900 chr6B 81.463 205 19 9 989 1191 711359566 711359753 2.760000e-32 150
16 TraesCS6B01G451900 chr6B 79.710 207 27 6 3768 3960 127737792 127737997 7.740000e-28 135
17 TraesCS6B01G451900 chr6D 92.569 3997 171 34 525 4436 465745602 465741647 0.000000e+00 5620
18 TraesCS6B01G451900 chr6D 87.050 2471 195 52 743 3163 465967384 465964989 0.000000e+00 2675
19 TraesCS6B01G451900 chr6D 88.333 1620 134 26 1822 3411 466329631 466331225 0.000000e+00 1893
20 TraesCS6B01G451900 chr6D 88.150 346 12 14 399 744 465967657 465967341 6.960000e-103 385
21 TraesCS6B01G451900 chr6D 84.733 393 31 16 522 912 465348591 465348226 2.520000e-97 366
22 TraesCS6B01G451900 chr6D 89.950 199 11 5 1 197 465968140 465967949 9.530000e-62 248
23 TraesCS6B01G451900 chr6D 73.174 753 138 34 2897 3611 466812059 466811333 3.480000e-51 213
24 TraesCS6B01G451900 chr6D 87.013 154 10 6 1 151 465746116 465745970 9.870000e-37 165
25 TraesCS6B01G451900 chr6D 95.000 100 2 2 399 498 465745696 465745600 2.140000e-33 154
26 TraesCS6B01G451900 chr6A 88.133 1618 143 28 1822 3407 612291770 612293370 0.000000e+00 1879
27 TraesCS6B01G451900 chr6A 85.950 1694 190 26 1497 3164 612300187 612301858 0.000000e+00 1766
28 TraesCS6B01G451900 chr6A 85.135 962 128 10 1822 2780 611902361 611903310 0.000000e+00 970
29 TraesCS6B01G451900 chr6A 84.295 936 85 34 363 1294 612299175 612300052 0.000000e+00 857
30 TraesCS6B01G451900 chr6A 90.596 436 32 8 483 913 613078761 613079192 1.790000e-158 569
31 TraesCS6B01G451900 chr6A 90.411 438 22 5 488 910 612110073 612109641 3.880000e-155 558
32 TraesCS6B01G451900 chr6A 83.607 488 47 16 593 1055 611901233 611901712 1.140000e-115 427
33 TraesCS6B01G451900 chr6A 87.158 366 31 7 557 907 125259253 125259617 6.910000e-108 401
34 TraesCS6B01G451900 chr6A 88.889 198 16 3 1 197 612110822 612110630 5.730000e-59 239
35 TraesCS6B01G451900 chr6A 89.674 184 14 5 416 598 611888062 611888241 3.450000e-56 230
36 TraesCS6B01G451900 chr6A 84.305 223 16 5 399 619 612126036 612125831 2.710000e-47 200
37 TraesCS6B01G451900 chr6A 96.117 103 1 2 399 501 612110199 612110100 9.870000e-37 165
38 TraesCS6B01G451900 chr6A 89.344 122 9 3 20 138 612126441 612126321 2.760000e-32 150
39 TraesCS6B01G451900 chr7B 88.262 673 58 7 3784 4436 664958105 664958776 0.000000e+00 785
40 TraesCS6B01G451900 chr7B 87.993 583 54 8 3863 4436 604770880 604770305 0.000000e+00 675
41 TraesCS6B01G451900 chr2B 89.789 568 47 4 3879 4436 325640688 325640122 0.000000e+00 717
42 TraesCS6B01G451900 chr2B 87.113 613 54 11 3839 4436 164079556 164078954 0.000000e+00 671
43 TraesCS6B01G451900 chr2B 81.884 414 43 9 3793 4176 77061459 77061048 1.990000e-83 320
44 TraesCS6B01G451900 chr3B 89.680 562 50 6 3879 4436 60298679 60299236 0.000000e+00 710
45 TraesCS6B01G451900 chr1B 88.055 586 51 11 3863 4436 157940184 157940762 0.000000e+00 676
46 TraesCS6B01G451900 chr1B 85.470 585 43 11 3884 4436 589761567 589762141 4.980000e-159 571
47 TraesCS6B01G451900 chr1B 82.208 607 42 30 3863 4436 11853341 11852768 3.130000e-126 462
48 TraesCS6B01G451900 chr2A 88.225 569 54 7 3879 4436 761071668 761071102 0.000000e+00 667
49 TraesCS6B01G451900 chr5B 87.022 601 50 14 3854 4436 594926262 594926852 0.000000e+00 652
50 TraesCS6B01G451900 chr5B 82.869 718 72 20 3770 4436 641414491 641415208 8.210000e-167 597
51 TraesCS6B01G451900 chr5B 82.674 733 60 25 3767 4436 15008359 15009087 4.940000e-164 588
52 TraesCS6B01G451900 chr5B 82.489 691 86 16 3770 4436 540358194 540357515 1.380000e-159 573
53 TraesCS6B01G451900 chr4B 82.669 727 73 11 3761 4436 657250684 657249960 2.950000e-166 595
54 TraesCS6B01G451900 chr1D 82.545 275 25 12 923 1192 447556960 447557216 2.080000e-53 220
55 TraesCS6B01G451900 chr1A 81.116 233 21 13 961 1191 543641481 543641692 9.870000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G451900 chr6B 710639510 710643945 4435 True 8192.000000 8192 100.000000 1 4436 1 chr6B.!!$R4 4435
1 TraesCS6B01G451900 chr6B 711359566 711361740 2174 False 1136.000000 2122 84.429000 989 3373 2 chr6B.!!$F7 2384
2 TraesCS6B01G451900 chr6B 711756442 711757773 1331 False 1088.000000 1088 81.744000 1823 3150 1 chr6B.!!$F5 1327
3 TraesCS6B01G451900 chr6B 711332494 711333452 958 True 885.000000 885 83.419000 1822 2787 1 chr6B.!!$R6 965
4 TraesCS6B01G451900 chr6B 710682642 710683591 949 True 793.000000 793 81.903000 1830 2787 1 chr6B.!!$R5 957
5 TraesCS6B01G451900 chr6B 98828724 98829287 563 True 665.000000 665 88.204000 3863 4421 1 chr6B.!!$R2 558
6 TraesCS6B01G451900 chr6B 120650596 120651193 597 False 654.000000 654 87.209000 3865 4436 1 chr6B.!!$F1 571
7 TraesCS6B01G451900 chr6B 31678040 31678749 709 True 542.000000 542 81.616000 3768 4436 1 chr6B.!!$R1 668
8 TraesCS6B01G451900 chr6B 711237573 711238545 972 True 355.000000 486 85.647500 1 912 2 chr6B.!!$R8 911
9 TraesCS6B01G451900 chr6D 465741647 465746116 4469 True 1979.666667 5620 91.527333 1 4436 3 chr6D.!!$R3 4435
10 TraesCS6B01G451900 chr6D 466329631 466331225 1594 False 1893.000000 1893 88.333000 1822 3411 1 chr6D.!!$F1 1589
11 TraesCS6B01G451900 chr6D 465964989 465968140 3151 True 1102.666667 2675 88.383333 1 3163 3 chr6D.!!$R4 3162
12 TraesCS6B01G451900 chr6D 466811333 466812059 726 True 213.000000 213 73.174000 2897 3611 1 chr6D.!!$R2 714
13 TraesCS6B01G451900 chr6A 612291770 612293370 1600 False 1879.000000 1879 88.133000 1822 3407 1 chr6A.!!$F3 1585
14 TraesCS6B01G451900 chr6A 612299175 612301858 2683 False 1311.500000 1766 85.122500 363 3164 2 chr6A.!!$F6 2801
15 TraesCS6B01G451900 chr6A 611901233 611903310 2077 False 698.500000 970 84.371000 593 2780 2 chr6A.!!$F5 2187
16 TraesCS6B01G451900 chr6A 612109641 612110822 1181 True 320.666667 558 91.805667 1 910 3 chr6A.!!$R1 909
17 TraesCS6B01G451900 chr7B 664958105 664958776 671 False 785.000000 785 88.262000 3784 4436 1 chr7B.!!$F1 652
18 TraesCS6B01G451900 chr7B 604770305 604770880 575 True 675.000000 675 87.993000 3863 4436 1 chr7B.!!$R1 573
19 TraesCS6B01G451900 chr2B 325640122 325640688 566 True 717.000000 717 89.789000 3879 4436 1 chr2B.!!$R3 557
20 TraesCS6B01G451900 chr2B 164078954 164079556 602 True 671.000000 671 87.113000 3839 4436 1 chr2B.!!$R2 597
21 TraesCS6B01G451900 chr3B 60298679 60299236 557 False 710.000000 710 89.680000 3879 4436 1 chr3B.!!$F1 557
22 TraesCS6B01G451900 chr1B 157940184 157940762 578 False 676.000000 676 88.055000 3863 4436 1 chr1B.!!$F1 573
23 TraesCS6B01G451900 chr1B 589761567 589762141 574 False 571.000000 571 85.470000 3884 4436 1 chr1B.!!$F2 552
24 TraesCS6B01G451900 chr1B 11852768 11853341 573 True 462.000000 462 82.208000 3863 4436 1 chr1B.!!$R1 573
25 TraesCS6B01G451900 chr2A 761071102 761071668 566 True 667.000000 667 88.225000 3879 4436 1 chr2A.!!$R1 557
26 TraesCS6B01G451900 chr5B 594926262 594926852 590 False 652.000000 652 87.022000 3854 4436 1 chr5B.!!$F2 582
27 TraesCS6B01G451900 chr5B 641414491 641415208 717 False 597.000000 597 82.869000 3770 4436 1 chr5B.!!$F3 666
28 TraesCS6B01G451900 chr5B 15008359 15009087 728 False 588.000000 588 82.674000 3767 4436 1 chr5B.!!$F1 669
29 TraesCS6B01G451900 chr5B 540357515 540358194 679 True 573.000000 573 82.489000 3770 4436 1 chr5B.!!$R1 666
30 TraesCS6B01G451900 chr4B 657249960 657250684 724 True 595.000000 595 82.669000 3761 4436 1 chr4B.!!$R1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 450 0.034059 CACTCACCTCCACTCCACAC 59.966 60.0 0.00 0.00 0.00 3.82 F
668 1040 0.251077 CCTTTTGGGAGCTGCAGTCT 60.251 55.0 16.64 12.91 37.23 3.24 F
2022 2655 1.891060 GACACAGCAGAAAGGACGCG 61.891 60.0 3.53 3.53 0.00 6.01 F
2936 3594 0.533491 CTTTGTCCCATGGTGGCATG 59.467 55.0 11.73 3.01 35.79 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2283 2921 0.036952 CAGGTGAGTTCGACCATGCT 60.037 55.0 0.00 0.00 35.76 3.79 R
2284 2922 1.021390 CCAGGTGAGTTCGACCATGC 61.021 60.0 0.00 0.00 35.76 4.06 R
3346 4055 0.678048 GGACCATGTTCAGGCCTCAC 60.678 60.0 0.00 2.85 0.00 3.51 R
3877 4670 1.040893 ATATGGGACGCGTGTCTGGA 61.041 55.0 26.79 12.47 44.83 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.835257 AGCACATCCATATAAACATGTTGC 58.165 37.500 12.82 7.24 0.00 4.17
43 47 7.920151 GCACATCCATATAAACATGTTGCTTTA 59.080 33.333 12.82 0.61 0.00 1.85
48 52 8.976353 TCCATATAAACATGTTGCTTTATTGGT 58.024 29.630 12.82 0.00 31.25 3.67
104 110 5.366768 TGCTACTCAAAATATAGGGCTCACT 59.633 40.000 0.00 0.00 0.00 3.41
105 111 6.553476 TGCTACTCAAAATATAGGGCTCACTA 59.447 38.462 0.00 0.00 0.00 2.74
106 112 7.093992 GCTACTCAAAATATAGGGCTCACTAG 58.906 42.308 0.00 0.00 0.00 2.57
107 113 7.039644 GCTACTCAAAATATAGGGCTCACTAGA 60.040 40.741 0.00 0.00 0.00 2.43
152 216 5.594317 AGTGATTTTTCTTGTACTTGCACCT 59.406 36.000 0.00 0.00 0.00 4.00
161 225 7.241042 TCTTGTACTTGCACCTTATAGTTCT 57.759 36.000 0.00 0.00 0.00 3.01
197 261 0.107993 CACTGGCGGATCTGTGTCAT 60.108 55.000 0.00 0.00 33.68 3.06
198 262 0.615331 ACTGGCGGATCTGTGTCATT 59.385 50.000 0.00 0.00 0.00 2.57
199 263 1.831106 ACTGGCGGATCTGTGTCATTA 59.169 47.619 0.00 0.00 0.00 1.90
200 264 2.205074 CTGGCGGATCTGTGTCATTAC 58.795 52.381 2.89 0.00 0.00 1.89
201 265 1.552792 TGGCGGATCTGTGTCATTACA 59.447 47.619 2.89 0.00 0.00 2.41
202 266 2.170397 TGGCGGATCTGTGTCATTACAT 59.830 45.455 2.89 0.00 38.08 2.29
203 267 2.545526 GGCGGATCTGTGTCATTACATG 59.454 50.000 2.89 0.00 38.08 3.21
204 268 3.457234 GCGGATCTGTGTCATTACATGA 58.543 45.455 0.00 0.00 38.08 3.07
205 269 4.060900 GCGGATCTGTGTCATTACATGAT 58.939 43.478 0.00 0.16 42.04 2.45
206 270 4.084171 GCGGATCTGTGTCATTACATGATG 60.084 45.833 0.00 0.00 42.04 3.07
207 271 5.291971 CGGATCTGTGTCATTACATGATGA 58.708 41.667 0.00 0.00 42.04 2.92
208 272 5.754890 CGGATCTGTGTCATTACATGATGAA 59.245 40.000 0.00 0.00 42.04 2.57
209 273 6.426025 CGGATCTGTGTCATTACATGATGAAT 59.574 38.462 0.00 0.00 42.04 2.57
210 274 7.599998 CGGATCTGTGTCATTACATGATGAATA 59.400 37.037 0.00 0.00 42.04 1.75
211 275 9.445878 GGATCTGTGTCATTACATGATGAATAT 57.554 33.333 0.00 0.00 42.04 1.28
213 277 9.788889 ATCTGTGTCATTACATGATGAATATGT 57.211 29.630 0.00 0.00 42.04 2.29
214 278 9.048446 TCTGTGTCATTACATGATGAATATGTG 57.952 33.333 0.00 0.00 42.04 3.21
215 279 7.641760 TGTGTCATTACATGATGAATATGTGC 58.358 34.615 0.00 0.00 42.04 4.57
216 280 7.282675 TGTGTCATTACATGATGAATATGTGCA 59.717 33.333 0.00 0.00 42.04 4.57
217 281 7.588854 GTGTCATTACATGATGAATATGTGCAC 59.411 37.037 10.75 10.75 42.04 4.57
218 282 7.080099 GTCATTACATGATGAATATGTGCACC 58.920 38.462 15.69 0.00 42.04 5.01
219 283 6.771749 TCATTACATGATGAATATGTGCACCA 59.228 34.615 15.69 4.63 39.03 4.17
220 284 7.449086 TCATTACATGATGAATATGTGCACCAT 59.551 33.333 15.69 9.88 39.03 3.55
221 285 8.732531 CATTACATGATGAATATGTGCACCATA 58.267 33.333 15.69 12.32 39.03 2.74
222 286 8.688747 TTACATGATGAATATGTGCACCATAA 57.311 30.769 15.69 3.38 39.43 1.90
223 287 7.585579 ACATGATGAATATGTGCACCATAAA 57.414 32.000 15.69 2.76 39.43 1.40
224 288 8.009622 ACATGATGAATATGTGCACCATAAAA 57.990 30.769 15.69 0.00 39.43 1.52
225 289 8.644216 ACATGATGAATATGTGCACCATAAAAT 58.356 29.630 15.69 2.05 39.43 1.82
226 290 8.921670 CATGATGAATATGTGCACCATAAAATG 58.078 33.333 15.69 10.31 39.43 2.32
227 291 8.009622 TGATGAATATGTGCACCATAAAATGT 57.990 30.769 15.69 0.00 39.43 2.71
228 292 9.129532 TGATGAATATGTGCACCATAAAATGTA 57.870 29.630 15.69 0.00 39.43 2.29
229 293 9.964303 GATGAATATGTGCACCATAAAATGTAA 57.036 29.630 15.69 0.00 39.43 2.41
230 294 9.748708 ATGAATATGTGCACCATAAAATGTAAC 57.251 29.630 15.69 0.00 39.43 2.50
231 295 8.965819 TGAATATGTGCACCATAAAATGTAACT 58.034 29.630 15.69 0.00 39.43 2.24
232 296 9.801873 GAATATGTGCACCATAAAATGTAACTT 57.198 29.630 15.69 1.03 39.43 2.66
244 308 8.932791 CATAAAATGTAACTTTAGTCGAGTGGT 58.067 33.333 2.10 0.00 0.00 4.16
303 395 2.297033 ACATGCACACTTGGGATGTTTC 59.703 45.455 0.00 0.00 43.55 2.78
310 402 2.886523 CACTTGGGATGTTTCTGCTTGA 59.113 45.455 0.00 0.00 0.00 3.02
312 404 3.571401 ACTTGGGATGTTTCTGCTTGAAG 59.429 43.478 0.00 0.00 35.89 3.02
315 407 2.163211 GGGATGTTTCTGCTTGAAGCTC 59.837 50.000 18.94 5.30 42.97 4.09
316 408 2.163211 GGATGTTTCTGCTTGAAGCTCC 59.837 50.000 18.94 10.88 42.97 4.70
317 409 2.645838 TGTTTCTGCTTGAAGCTCCT 57.354 45.000 18.94 0.00 42.97 3.69
318 410 2.224606 TGTTTCTGCTTGAAGCTCCTG 58.775 47.619 18.94 6.27 42.97 3.86
320 412 0.037303 TTCTGCTTGAAGCTCCTGGG 59.963 55.000 18.94 2.25 42.97 4.45
322 414 2.354343 GCTTGAAGCTCCTGGGCT 59.646 61.111 10.44 4.13 45.30 5.19
323 415 2.045131 GCTTGAAGCTCCTGGGCTG 61.045 63.158 10.44 0.59 42.24 4.85
324 416 1.681666 CTTGAAGCTCCTGGGCTGA 59.318 57.895 9.92 0.00 42.24 4.26
327 419 0.837691 TGAAGCTCCTGGGCTGAAGA 60.838 55.000 9.92 0.00 42.24 2.87
328 420 0.107752 GAAGCTCCTGGGCTGAAGAG 60.108 60.000 9.92 0.00 42.24 2.85
329 421 2.124778 GCTCCTGGGCTGAAGAGC 60.125 66.667 0.00 0.00 44.36 4.09
330 422 2.668120 GCTCCTGGGCTGAAGAGCT 61.668 63.158 10.68 0.00 46.50 4.09
332 424 0.107752 CTCCTGGGCTGAAGAGCTTC 60.108 60.000 3.32 3.32 45.44 3.86
333 425 1.077858 CCTGGGCTGAAGAGCTTCC 60.078 63.158 7.69 0.00 45.44 3.46
334 426 1.449246 CTGGGCTGAAGAGCTTCCG 60.449 63.158 7.69 2.87 45.44 4.30
335 427 2.124942 GGGCTGAAGAGCTTCCGG 60.125 66.667 7.69 0.00 45.44 5.14
336 428 2.821810 GGCTGAAGAGCTTCCGGC 60.822 66.667 11.24 11.24 45.44 6.13
337 429 2.821810 GCTGAAGAGCTTCCGGCC 60.822 66.667 0.00 0.00 42.52 6.13
338 430 2.665000 CTGAAGAGCTTCCGGCCA 59.335 61.111 2.24 0.00 43.05 5.36
339 431 1.743252 CTGAAGAGCTTCCGGCCAC 60.743 63.158 2.24 0.00 43.05 5.01
340 432 2.347490 GAAGAGCTTCCGGCCACA 59.653 61.111 2.24 0.00 43.05 4.17
341 433 2.032681 AAGAGCTTCCGGCCACAC 59.967 61.111 2.24 0.00 43.05 3.82
342 434 2.456287 GAAGAGCTTCCGGCCACACT 62.456 60.000 2.24 0.00 43.05 3.55
343 435 2.435059 GAGCTTCCGGCCACACTC 60.435 66.667 2.24 0.00 43.05 3.51
344 436 3.240134 GAGCTTCCGGCCACACTCA 62.240 63.158 2.24 0.00 43.05 3.41
345 437 3.050275 GCTTCCGGCCACACTCAC 61.050 66.667 2.24 0.00 34.27 3.51
346 438 2.358737 CTTCCGGCCACACTCACC 60.359 66.667 2.24 0.00 0.00 4.02
348 440 2.788191 CTTCCGGCCACACTCACCTC 62.788 65.000 2.24 0.00 0.00 3.85
349 441 4.394712 CCGGCCACACTCACCTCC 62.395 72.222 2.24 0.00 0.00 4.30
350 442 3.625897 CGGCCACACTCACCTCCA 61.626 66.667 2.24 0.00 0.00 3.86
352 444 2.520536 GGCCACACTCACCTCCACT 61.521 63.158 0.00 0.00 0.00 4.00
353 445 1.004440 GCCACACTCACCTCCACTC 60.004 63.158 0.00 0.00 0.00 3.51
355 447 1.121407 CCACACTCACCTCCACTCCA 61.121 60.000 0.00 0.00 0.00 3.86
358 450 0.034059 CACTCACCTCCACTCCACAC 59.966 60.000 0.00 0.00 0.00 3.82
365 457 1.463214 TCCACTCCACACCCACCAT 60.463 57.895 0.00 0.00 0.00 3.55
372 464 4.344865 ACACCCACCATCCACCGC 62.345 66.667 0.00 0.00 0.00 5.68
518 890 1.661341 CAGAGAGCAAAAGGGGATCG 58.339 55.000 0.00 0.00 0.00 3.69
562 934 4.529219 CTGCCGTGCGCCCATCTA 62.529 66.667 4.18 0.00 36.24 1.98
563 935 4.089239 TGCCGTGCGCCCATCTAA 62.089 61.111 4.18 0.00 36.24 2.10
583 955 2.509336 CCTCTCGCCGTCGCAATT 60.509 61.111 0.00 0.00 35.26 2.32
584 956 2.100631 CCTCTCGCCGTCGCAATTT 61.101 57.895 0.00 0.00 35.26 1.82
651 1023 1.002857 ACCAAATAAGCAGCTCCCCT 58.997 50.000 0.00 0.00 0.00 4.79
668 1040 0.251077 CCTTTTGGGAGCTGCAGTCT 60.251 55.000 16.64 12.91 37.23 3.24
760 1179 2.476320 GCAATCAAGCGGCTCCTCC 61.476 63.158 1.45 0.00 0.00 4.30
1118 1577 6.549364 TCCTTCAAATCCTTTTTCTTACTGCA 59.451 34.615 0.00 0.00 0.00 4.41
1119 1578 7.233348 TCCTTCAAATCCTTTTTCTTACTGCAT 59.767 33.333 0.00 0.00 0.00 3.96
1241 1700 8.893563 TTAGTGGGAACATATCAAAATTCCTT 57.106 30.769 2.15 0.00 46.14 3.36
1334 1794 4.736126 TTTCCATCAGCAGATCTACGAA 57.264 40.909 0.00 0.00 30.20 3.85
1409 1906 7.813148 CAGACAGCATCAAAATTTCATCTTTCT 59.187 33.333 0.00 0.00 0.00 2.52
1484 1988 6.434028 TGTTATCTTAGCCAAATCAAAGCTGT 59.566 34.615 0.00 0.00 37.45 4.40
1724 2273 3.124636 CACGGCTTAAAATAAGTGCTCGT 59.875 43.478 0.00 0.00 33.48 4.18
2022 2655 1.891060 GACACAGCAGAAAGGACGCG 61.891 60.000 3.53 3.53 0.00 6.01
2023 2659 2.357517 ACAGCAGAAAGGACGCGG 60.358 61.111 12.47 0.00 0.00 6.46
2283 2921 6.561737 TCAGTATTGTTGATTGCCGTTTTA 57.438 33.333 0.00 0.00 0.00 1.52
2284 2922 6.607689 TCAGTATTGTTGATTGCCGTTTTAG 58.392 36.000 0.00 0.00 0.00 1.85
2350 2988 5.740099 CGTTTTTGTTTTGGTTATCTCACGT 59.260 36.000 0.00 0.00 0.00 4.49
2524 3162 3.733443 AAGTTGTGGGTTGATTGCTTC 57.267 42.857 0.00 0.00 0.00 3.86
2528 3166 1.336440 TGTGGGTTGATTGCTTCGTTG 59.664 47.619 0.00 0.00 0.00 4.10
2731 3374 2.392662 CCTGGAGGAGCTCTACATGAA 58.607 52.381 14.64 0.00 35.40 2.57
2746 3391 7.661536 TCTACATGAAGGTATGTTCTTAGCT 57.338 36.000 0.00 0.00 41.31 3.32
2747 3392 8.762481 TCTACATGAAGGTATGTTCTTAGCTA 57.238 34.615 0.00 0.00 41.31 3.32
2748 3393 8.851145 TCTACATGAAGGTATGTTCTTAGCTAG 58.149 37.037 0.00 0.00 41.31 3.42
2851 3508 5.192927 TGTTTGAGGGGTTGCTCTATTATG 58.807 41.667 0.00 0.00 0.00 1.90
2925 3583 3.392882 CTGTTTCATTTGCCTTTGTCCC 58.607 45.455 0.00 0.00 0.00 4.46
2930 3588 1.624813 CATTTGCCTTTGTCCCATGGT 59.375 47.619 11.73 0.00 0.00 3.55
2931 3589 1.047002 TTTGCCTTTGTCCCATGGTG 58.953 50.000 11.73 2.15 0.00 4.17
2932 3590 0.831288 TTGCCTTTGTCCCATGGTGG 60.831 55.000 11.73 4.10 37.25 4.61
2933 3591 2.649129 GCCTTTGTCCCATGGTGGC 61.649 63.158 11.73 10.21 35.79 5.01
2934 3592 1.228831 CCTTTGTCCCATGGTGGCA 60.229 57.895 11.73 7.23 35.79 4.92
2935 3593 0.615544 CCTTTGTCCCATGGTGGCAT 60.616 55.000 11.73 0.00 35.79 4.40
2936 3594 0.533491 CTTTGTCCCATGGTGGCATG 59.467 55.000 11.73 3.01 35.79 4.06
2937 3595 1.543065 TTTGTCCCATGGTGGCATGC 61.543 55.000 9.90 9.90 35.79 4.06
2938 3596 2.362760 GTCCCATGGTGGCATGCA 60.363 61.111 21.36 2.54 35.79 3.96
2939 3597 2.362760 TCCCATGGTGGCATGCAC 60.363 61.111 21.36 15.10 35.79 4.57
2979 3646 6.632909 TCCATGTGAAATGGAAATGAATCAC 58.367 36.000 0.74 0.00 44.54 3.06
2982 3649 5.698832 TGTGAAATGGAAATGAATCACGAC 58.301 37.500 0.00 0.00 39.91 4.34
3039 3742 4.701651 CCTACATCAGATTTCAAGCACCAA 59.298 41.667 0.00 0.00 0.00 3.67
3155 3858 5.775701 AGGATGTGTACCTGTATGATAGACC 59.224 44.000 0.00 0.00 36.30 3.85
3179 3882 2.245159 TGTGCCAAGTGTCTCAAGAG 57.755 50.000 0.00 0.00 0.00 2.85
3194 3897 3.020274 TCAAGAGAGTAGAGAATGCGCT 58.980 45.455 9.73 0.00 0.00 5.92
3197 3900 3.020274 AGAGAGTAGAGAATGCGCTCAA 58.980 45.455 9.73 0.00 41.75 3.02
3198 3901 3.112580 GAGAGTAGAGAATGCGCTCAAC 58.887 50.000 9.73 0.00 39.63 3.18
3331 4040 3.068024 GTCACTTGCCAAAATCCACTTCA 59.932 43.478 0.00 0.00 0.00 3.02
3346 4055 3.881688 CCACTTCATGGCATCTAAGGAAG 59.118 47.826 17.93 17.93 43.24 3.46
3352 4061 1.210478 TGGCATCTAAGGAAGTGAGGC 59.790 52.381 0.00 0.00 36.87 4.70
3361 4070 1.004044 AGGAAGTGAGGCCTGAACATG 59.996 52.381 12.00 0.00 32.06 3.21
3376 4088 4.047166 TGAACATGGTCCAAGGATAGGAT 58.953 43.478 8.62 0.00 37.52 3.24
3423 4135 1.112113 GGATGTTGTCGAGGCTAGGA 58.888 55.000 0.00 0.00 0.00 2.94
3456 4172 1.966451 CCAGTCGGTTGGAGTTGCC 60.966 63.158 0.35 0.00 40.87 4.52
3481 4202 5.809051 AGCTTTTCTTGTTTGCTCTTCTTTG 59.191 36.000 0.00 0.00 0.00 2.77
3486 4207 1.408702 TGTTTGCTCTTCTTTGGTGGC 59.591 47.619 0.00 0.00 0.00 5.01
3488 4209 2.071778 TTGCTCTTCTTTGGTGGCTT 57.928 45.000 0.00 0.00 0.00 4.35
3752 4503 2.738521 CAGCACGGAACTCGGGTG 60.739 66.667 0.00 0.00 45.61 4.61
3753 4504 3.231736 AGCACGGAACTCGGGTGT 61.232 61.111 0.00 0.00 45.61 4.16
3811 4564 4.545706 CCCAGCGCATAGGCCGAA 62.546 66.667 11.47 0.00 36.38 4.30
3820 4573 1.269257 GCATAGGCCGAAGCATTTTCC 60.269 52.381 8.28 0.00 42.56 3.13
4237 5094 2.187946 CCTCGCTCCGCCAAGAAT 59.812 61.111 0.00 0.00 0.00 2.40
4280 5138 3.820595 CTCTGGAGCATGTCAACGA 57.179 52.632 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 85 5.366768 AGTGAGCCCTATATTTTGAGTAGCA 59.633 40.000 0.00 0.00 0.00 3.49
87 92 7.296628 AGACTCTAGTGAGCCCTATATTTTG 57.703 40.000 0.00 0.00 43.85 2.44
92 98 5.046159 GCTCTAGACTCTAGTGAGCCCTATA 60.046 48.000 16.20 0.00 43.85 1.31
104 110 2.484065 GCTGGACGAGCTCTAGACTCTA 60.484 54.545 12.85 0.00 45.21 2.43
105 111 1.745827 GCTGGACGAGCTCTAGACTCT 60.746 57.143 12.85 5.45 45.21 3.24
106 112 0.661020 GCTGGACGAGCTCTAGACTC 59.339 60.000 12.85 10.56 45.21 3.36
107 113 2.788515 GCTGGACGAGCTCTAGACT 58.211 57.895 12.85 0.00 45.21 3.24
179 243 0.615331 AATGACACAGATCCGCCAGT 59.385 50.000 0.00 0.00 0.00 4.00
197 261 8.688747 TTATGGTGCACATATTCATCATGTAA 57.311 30.769 20.43 0.64 41.49 2.41
198 262 8.688747 TTTATGGTGCACATATTCATCATGTA 57.311 30.769 20.43 0.89 41.49 2.29
199 263 7.585579 TTTATGGTGCACATATTCATCATGT 57.414 32.000 20.43 0.00 41.49 3.21
200 264 8.921670 CATTTTATGGTGCACATATTCATCATG 58.078 33.333 20.43 10.94 41.49 3.07
201 265 8.644216 ACATTTTATGGTGCACATATTCATCAT 58.356 29.630 20.43 12.17 41.49 2.45
202 266 8.009622 ACATTTTATGGTGCACATATTCATCA 57.990 30.769 20.43 4.81 41.49 3.07
203 267 9.964303 TTACATTTTATGGTGCACATATTCATC 57.036 29.630 20.43 0.00 41.49 2.92
204 268 9.748708 GTTACATTTTATGGTGCACATATTCAT 57.251 29.630 20.43 14.32 41.49 2.57
205 269 8.965819 AGTTACATTTTATGGTGCACATATTCA 58.034 29.630 20.43 7.22 41.49 2.57
206 270 9.801873 AAGTTACATTTTATGGTGCACATATTC 57.198 29.630 20.43 0.52 41.49 1.75
210 274 8.802267 ACTAAAGTTACATTTTATGGTGCACAT 58.198 29.630 20.43 12.55 43.68 3.21
211 275 8.172352 ACTAAAGTTACATTTTATGGTGCACA 57.828 30.769 20.43 5.24 33.60 4.57
212 276 7.480542 CGACTAAAGTTACATTTTATGGTGCAC 59.519 37.037 8.80 8.80 33.60 4.57
213 277 7.388224 TCGACTAAAGTTACATTTTATGGTGCA 59.612 33.333 0.00 0.00 33.60 4.57
214 278 7.745015 TCGACTAAAGTTACATTTTATGGTGC 58.255 34.615 0.00 0.00 33.60 5.01
215 279 8.932791 ACTCGACTAAAGTTACATTTTATGGTG 58.067 33.333 0.00 0.00 33.60 4.17
216 280 8.932791 CACTCGACTAAAGTTACATTTTATGGT 58.067 33.333 0.00 0.00 33.60 3.55
217 281 8.388103 CCACTCGACTAAAGTTACATTTTATGG 58.612 37.037 0.00 0.00 33.60 2.74
218 282 8.932791 ACCACTCGACTAAAGTTACATTTTATG 58.067 33.333 0.00 0.00 0.00 1.90
219 283 9.498176 AACCACTCGACTAAAGTTACATTTTAT 57.502 29.630 0.00 0.00 0.00 1.40
220 284 8.891671 AACCACTCGACTAAAGTTACATTTTA 57.108 30.769 0.00 0.00 0.00 1.52
221 285 7.797038 AACCACTCGACTAAAGTTACATTTT 57.203 32.000 0.00 0.00 0.00 1.82
222 286 7.927629 TGTAACCACTCGACTAAAGTTACATTT 59.072 33.333 13.58 0.00 42.56 2.32
223 287 7.436118 TGTAACCACTCGACTAAAGTTACATT 58.564 34.615 13.58 0.00 42.56 2.71
224 288 6.985117 TGTAACCACTCGACTAAAGTTACAT 58.015 36.000 13.58 0.00 42.56 2.29
225 289 6.389830 TGTAACCACTCGACTAAAGTTACA 57.610 37.500 13.58 13.58 44.19 2.41
226 290 7.880059 AATGTAACCACTCGACTAAAGTTAC 57.120 36.000 0.00 0.00 39.80 2.50
227 291 8.891671 AAAATGTAACCACTCGACTAAAGTTA 57.108 30.769 0.00 0.00 0.00 2.24
228 292 7.797038 AAAATGTAACCACTCGACTAAAGTT 57.203 32.000 0.00 0.00 0.00 2.66
229 293 7.636326 CAAAAATGTAACCACTCGACTAAAGT 58.364 34.615 0.00 0.00 0.00 2.66
230 294 6.577427 GCAAAAATGTAACCACTCGACTAAAG 59.423 38.462 0.00 0.00 0.00 1.85
231 295 6.432107 GCAAAAATGTAACCACTCGACTAAA 58.568 36.000 0.00 0.00 0.00 1.85
232 296 5.333492 CGCAAAAATGTAACCACTCGACTAA 60.333 40.000 0.00 0.00 0.00 2.24
233 297 4.150980 CGCAAAAATGTAACCACTCGACTA 59.849 41.667 0.00 0.00 0.00 2.59
244 308 8.815141 TGTAGTAGTACTTCGCAAAAATGTAA 57.185 30.769 8.40 0.00 0.00 2.41
293 385 1.888512 GCTTCAAGCAGAAACATCCCA 59.111 47.619 3.89 0.00 41.89 4.37
303 395 2.045131 GCCCAGGAGCTTCAAGCAG 61.045 63.158 13.10 0.00 45.56 4.24
310 402 1.989620 CTCTTCAGCCCAGGAGCTT 59.010 57.895 0.00 0.00 42.61 3.74
312 404 2.124778 GCTCTTCAGCCCAGGAGC 60.125 66.667 1.41 1.41 43.07 4.70
322 414 2.347490 GTGGCCGGAAGCTCTTCA 59.653 61.111 5.05 0.00 43.05 3.02
323 415 2.035442 GTGTGGCCGGAAGCTCTTC 61.035 63.158 5.05 1.12 43.05 2.87
324 416 2.032681 GTGTGGCCGGAAGCTCTT 59.967 61.111 5.05 0.00 43.05 2.85
327 419 3.241530 TGAGTGTGGCCGGAAGCT 61.242 61.111 5.05 0.00 43.05 3.74
328 420 3.050275 GTGAGTGTGGCCGGAAGC 61.050 66.667 5.05 0.00 42.60 3.86
329 421 2.358737 GGTGAGTGTGGCCGGAAG 60.359 66.667 5.05 0.00 0.00 3.46
330 422 2.847234 AGGTGAGTGTGGCCGGAA 60.847 61.111 5.05 0.00 0.00 4.30
332 424 4.394712 GGAGGTGAGTGTGGCCGG 62.395 72.222 0.00 0.00 0.00 6.13
333 425 3.625897 TGGAGGTGAGTGTGGCCG 61.626 66.667 0.00 0.00 0.00 6.13
334 426 2.032681 GTGGAGGTGAGTGTGGCC 59.967 66.667 0.00 0.00 0.00 5.36
335 427 1.004440 GAGTGGAGGTGAGTGTGGC 60.004 63.158 0.00 0.00 0.00 5.01
336 428 1.121407 TGGAGTGGAGGTGAGTGTGG 61.121 60.000 0.00 0.00 0.00 4.17
337 429 0.034059 GTGGAGTGGAGGTGAGTGTG 59.966 60.000 0.00 0.00 0.00 3.82
338 430 0.398522 TGTGGAGTGGAGGTGAGTGT 60.399 55.000 0.00 0.00 0.00 3.55
339 431 0.034059 GTGTGGAGTGGAGGTGAGTG 59.966 60.000 0.00 0.00 0.00 3.51
340 432 1.122019 GGTGTGGAGTGGAGGTGAGT 61.122 60.000 0.00 0.00 0.00 3.41
341 433 1.674057 GGTGTGGAGTGGAGGTGAG 59.326 63.158 0.00 0.00 0.00 3.51
342 434 1.841556 GGGTGTGGAGTGGAGGTGA 60.842 63.158 0.00 0.00 0.00 4.02
343 435 2.146724 TGGGTGTGGAGTGGAGGTG 61.147 63.158 0.00 0.00 0.00 4.00
344 436 2.147387 GTGGGTGTGGAGTGGAGGT 61.147 63.158 0.00 0.00 0.00 3.85
345 437 2.750350 GTGGGTGTGGAGTGGAGG 59.250 66.667 0.00 0.00 0.00 4.30
346 438 1.492133 ATGGTGGGTGTGGAGTGGAG 61.492 60.000 0.00 0.00 0.00 3.86
348 440 1.002134 GATGGTGGGTGTGGAGTGG 60.002 63.158 0.00 0.00 0.00 4.00
349 441 1.002134 GGATGGTGGGTGTGGAGTG 60.002 63.158 0.00 0.00 0.00 3.51
350 442 1.463214 TGGATGGTGGGTGTGGAGT 60.463 57.895 0.00 0.00 0.00 3.85
352 444 2.534396 GGTGGATGGTGGGTGTGGA 61.534 63.158 0.00 0.00 0.00 4.02
353 445 2.035626 GGTGGATGGTGGGTGTGG 59.964 66.667 0.00 0.00 0.00 4.17
355 447 4.344865 GCGGTGGATGGTGGGTGT 62.345 66.667 0.00 0.00 0.00 4.16
358 450 4.838152 CGAGCGGTGGATGGTGGG 62.838 72.222 0.00 0.00 0.00 4.61
384 476 1.407656 TTGTTCCTGACGTGAGGCCT 61.408 55.000 17.16 3.86 39.67 5.19
583 955 1.672854 ATTCGAGGCATCCGACGGAA 61.673 55.000 22.55 4.44 34.34 4.30
584 956 2.125326 ATTCGAGGCATCCGACGGA 61.125 57.895 20.85 20.85 35.61 4.69
651 1023 0.250901 GGAGACTGCAGCTCCCAAAA 60.251 55.000 31.17 0.00 44.96 2.44
668 1040 2.283298 GCTCTTGCTGATTCGATTGGA 58.717 47.619 0.00 0.00 36.03 3.53
810 1229 2.493675 GGAAAGGACTGCTTTGATTCCC 59.506 50.000 0.00 0.00 30.94 3.97
957 1406 4.826556 AGTCTGAAAACTGATGTCTAGGC 58.173 43.478 0.00 0.00 0.00 3.93
1315 1775 2.625314 CCTTCGTAGATCTGCTGATGGA 59.375 50.000 21.01 6.53 35.04 3.41
1353 1850 2.514458 ATTTGACCCCTGGTTGCTAG 57.486 50.000 0.00 0.00 35.25 3.42
1724 2273 2.158475 AGCTTGTGGGGACAGAAAATCA 60.158 45.455 0.00 0.00 43.75 2.57
2022 2655 5.070446 TCACCATCTCATCAATACTACACCC 59.930 44.000 0.00 0.00 0.00 4.61
2023 2659 6.161855 TCACCATCTCATCAATACTACACC 57.838 41.667 0.00 0.00 0.00 4.16
2210 2846 3.385577 GAGCGTTATCCAATCCTCTGTC 58.614 50.000 0.00 0.00 0.00 3.51
2283 2921 0.036952 CAGGTGAGTTCGACCATGCT 60.037 55.000 0.00 0.00 35.76 3.79
2284 2922 1.021390 CCAGGTGAGTTCGACCATGC 61.021 60.000 0.00 0.00 35.76 4.06
2350 2988 3.162666 CCCAGTGACAGTGGTAGTTCTA 58.837 50.000 24.64 0.00 36.97 2.10
2524 3162 1.670811 AGAACAAGTGAAGCCACAACG 59.329 47.619 0.00 0.00 45.54 4.10
2528 3166 3.991121 GAGTAGAGAACAAGTGAAGCCAC 59.009 47.826 0.00 0.00 43.50 5.01
2874 3531 2.629137 TGCACTCCAAATGAAAGCACAT 59.371 40.909 0.00 0.00 30.48 3.21
2930 3588 2.114051 CATACCTGCGTGCATGCCA 61.114 57.895 27.43 14.56 0.00 4.92
2931 3589 2.717485 CATACCTGCGTGCATGCC 59.283 61.111 27.43 10.63 0.00 4.40
2932 3590 2.717485 CCATACCTGCGTGCATGC 59.283 61.111 24.20 24.20 0.00 4.06
2933 3591 1.153188 TCCCATACCTGCGTGCATG 60.153 57.895 0.09 0.09 0.00 4.06
2934 3592 1.153168 GTCCCATACCTGCGTGCAT 60.153 57.895 0.00 0.00 0.00 3.96
2935 3593 2.267642 GTCCCATACCTGCGTGCA 59.732 61.111 0.00 0.00 0.00 4.57
2936 3594 2.513897 GGTCCCATACCTGCGTGC 60.514 66.667 0.00 0.00 45.75 5.34
2979 3646 2.731976 GCCCTTATTCTCGCTAATGTCG 59.268 50.000 0.00 0.00 0.00 4.35
2982 3649 2.755650 ACGCCCTTATTCTCGCTAATG 58.244 47.619 0.00 0.00 0.00 1.90
3025 3728 3.841643 CCAGACATTGGTGCTTGAAATC 58.158 45.455 0.00 0.00 42.41 2.17
3039 3742 1.637553 AGGATGAACTTGGCCAGACAT 59.362 47.619 5.11 10.44 0.00 3.06
3173 3876 3.020274 AGCGCATTCTCTACTCTCTTGA 58.980 45.455 11.47 0.00 0.00 3.02
3179 3882 3.157932 AGTTGAGCGCATTCTCTACTC 57.842 47.619 11.47 0.00 42.54 2.59
3194 3897 2.352715 CGTACCACTGCATCAGAGTTGA 60.353 50.000 0.29 0.00 37.81 3.18
3197 3900 1.067565 CACGTACCACTGCATCAGAGT 60.068 52.381 0.29 1.01 35.18 3.24
3198 3901 1.633561 CACGTACCACTGCATCAGAG 58.366 55.000 0.29 0.00 35.18 3.35
3331 4040 2.158696 GCCTCACTTCCTTAGATGCCAT 60.159 50.000 0.00 0.00 0.00 4.40
3334 4043 1.488393 AGGCCTCACTTCCTTAGATGC 59.512 52.381 0.00 0.00 0.00 3.91
3346 4055 0.678048 GGACCATGTTCAGGCCTCAC 60.678 60.000 0.00 2.85 0.00 3.51
3352 4061 2.814805 ATCCTTGGACCATGTTCAGG 57.185 50.000 0.00 0.00 0.00 3.86
3361 4070 5.659079 CCATAGAGTATCCTATCCTTGGACC 59.341 48.000 0.00 0.00 36.30 4.46
3382 4094 4.202503 CCAGTTATCTTCTATGGCACCCAT 60.203 45.833 1.94 1.94 46.99 4.00
3423 4135 4.365723 CCGACTGGTATTAAATACGCTGT 58.634 43.478 0.00 0.00 36.61 4.40
3456 4172 4.929781 AGAAGAGCAAACAAGAAAAGCTG 58.070 39.130 0.00 0.00 35.36 4.24
3481 4202 1.165270 ATACAAGCGTTGAAGCCACC 58.835 50.000 5.01 0.00 38.01 4.61
3486 4207 9.820229 TGAATTTAGTTTATACAAGCGTTGAAG 57.180 29.630 5.01 0.00 0.00 3.02
3488 4209 8.995220 ACTGAATTTAGTTTATACAAGCGTTGA 58.005 29.630 0.00 0.00 0.00 3.18
3702 4426 9.851686 ACCAATTACATGCTTCATCTTCTATAA 57.148 29.630 0.00 0.00 0.00 0.98
3752 4503 7.369803 TGCTCTAAGAATTCAGTCAAATGAC 57.630 36.000 8.44 5.40 45.08 3.06
3753 4504 8.045507 AGATGCTCTAAGAATTCAGTCAAATGA 58.954 33.333 8.44 0.00 0.00 2.57
3782 4533 4.883354 GCTGGGGGCCGAATGAGG 62.883 72.222 0.00 0.00 34.27 3.86
3811 4564 1.376609 GATGGACGCCGGAAAATGCT 61.377 55.000 5.05 0.00 0.00 3.79
3820 4573 4.592192 ATCGCAGGATGGACGCCG 62.592 66.667 0.00 0.00 35.86 6.46
3872 4665 3.841379 GACGCGTGTCTGGACAGCA 62.841 63.158 20.70 0.00 42.74 4.41
3873 4666 3.106407 GACGCGTGTCTGGACAGC 61.106 66.667 20.70 8.82 42.74 4.40
3875 4668 3.986006 GGGACGCGTGTCTGGACA 61.986 66.667 26.79 0.00 44.83 4.02
3876 4669 1.940883 TATGGGACGCGTGTCTGGAC 61.941 60.000 26.79 15.56 44.83 4.02
3877 4670 1.040893 ATATGGGACGCGTGTCTGGA 61.041 55.000 26.79 12.47 44.83 3.86
3952 4747 1.347221 CGCACTAAATCGCCGAACC 59.653 57.895 0.00 0.00 0.00 3.62
4277 5135 2.290260 TGACTTTCTTGATGGGCATCGT 60.290 45.455 0.00 0.00 40.63 3.73
4280 5138 2.042162 ACCTGACTTTCTTGATGGGCAT 59.958 45.455 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.