Multiple sequence alignment - TraesCS6B01G451800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G451800 chr6B 100.000 4203 0 0 1 4203 710320274 710316072 0.000000e+00 7762.0
1 TraesCS6B01G451800 chr6B 82.671 1812 270 29 1294 3077 711724047 711725842 0.000000e+00 1567.0
2 TraesCS6B01G451800 chr6B 81.307 1974 284 51 1150 3089 645653324 645655246 0.000000e+00 1522.0
3 TraesCS6B01G451800 chr6B 81.679 1834 271 40 1294 3094 646010226 646008425 0.000000e+00 1465.0
4 TraesCS6B01G451800 chr6B 84.499 1187 165 14 1464 2635 711655456 711654274 0.000000e+00 1155.0
5 TraesCS6B01G451800 chr6B 97.911 383 8 0 291 673 710325638 710325256 0.000000e+00 664.0
6 TraesCS6B01G451800 chr6B 82.721 463 70 3 2629 3081 711636619 711636157 1.820000e-108 403.0
7 TraesCS6B01G451800 chr6B 91.818 220 13 4 708 926 711709448 711709663 6.830000e-78 302.0
8 TraesCS6B01G451800 chr6B 94.012 167 9 1 761 926 711755544 711755710 6.980000e-63 252.0
9 TraesCS6B01G451800 chr6B 92.169 166 13 0 761 926 710643238 710643073 7.030000e-58 235.0
10 TraesCS6B01G451800 chr6B 78.355 231 26 14 708 926 711740173 711739955 1.230000e-25 128.0
11 TraesCS6B01G451800 chr6B 86.813 91 11 1 708 798 711237869 711237780 2.670000e-17 100.0
12 TraesCS6B01G451800 chr6D 95.733 2695 91 10 708 3383 465348482 465345793 0.000000e+00 4318.0
13 TraesCS6B01G451800 chr6D 81.022 1976 294 50 1150 3089 428960098 428962028 0.000000e+00 1496.0
14 TraesCS6B01G451800 chr6D 90.968 155 14 0 772 926 465745393 465745239 4.260000e-50 209.0
15 TraesCS6B01G451800 chr6D 86.667 90 11 1 708 797 465745490 465745402 9.620000e-17 99.0
16 TraesCS6B01G451800 chr6D 83.333 96 10 4 708 797 465967436 465967341 2.690000e-12 84.2
17 TraesCS6B01G451800 chr6A 82.385 1811 276 30 1294 3077 613079515 613081309 0.000000e+00 1537.0
18 TraesCS6B01G451800 chr6A 80.998 1984 282 57 1150 3094 574222411 574220484 0.000000e+00 1487.0
19 TraesCS6B01G451800 chr6A 81.443 1843 277 38 1279 3089 573636262 573638071 0.000000e+00 1448.0
20 TraesCS6B01G451800 chr6A 84.025 795 104 9 2306 3077 612568152 612567358 0.000000e+00 743.0
21 TraesCS6B01G451800 chr6A 86.811 417 42 7 3575 3984 611923669 611923259 1.780000e-123 453.0
22 TraesCS6B01G451800 chr6A 92.558 215 13 1 708 922 612299438 612299649 5.280000e-79 305.0
23 TraesCS6B01G451800 chr6A 93.976 166 10 0 761 926 612109843 612109678 6.980000e-63 252.0
24 TraesCS6B01G451800 chr6A 92.169 166 13 0 761 926 613078986 613079151 7.030000e-58 235.0
25 TraesCS6B01G451800 chr6A 90.683 161 14 1 761 921 125259419 125259578 3.290000e-51 213.0
26 TraesCS6B01G451800 chr6A 89.535 86 8 1 4080 4165 611922476 611922392 1.600000e-19 108.0
27 TraesCS6B01G451800 chr6A 85.859 99 11 2 951 1047 613079224 613079321 7.430000e-18 102.0
28 TraesCS6B01G451800 chr6A 79.851 134 16 9 708 840 125259333 125259456 2.080000e-13 87.9
29 TraesCS6B01G451800 chr6A 100.000 28 0 0 671 698 612299359 612299386 8.000000e-03 52.8
30 TraesCS6B01G451800 chr7B 96.608 678 23 0 1 678 591392166 591391489 0.000000e+00 1125.0
31 TraesCS6B01G451800 chr7B 94.629 391 11 3 291 673 591452042 591451654 7.780000e-167 597.0
32 TraesCS6B01G451800 chr7B 100.000 31 0 0 3357 3387 373075550 373075580 1.630000e-04 58.4
33 TraesCS6B01G451800 chr3D 94.940 672 25 1 1 672 445318466 445317804 0.000000e+00 1044.0
34 TraesCS6B01G451800 chr3D 79.717 1129 166 33 1894 2987 464051502 464052602 0.000000e+00 758.0
35 TraesCS6B01G451800 chr3D 93.947 380 23 0 291 670 445334228 445333849 3.640000e-160 575.0
36 TraesCS6B01G451800 chr3B 81.058 718 112 12 2290 2987 702688768 702688055 6.140000e-153 551.0
37 TraesCS6B01G451800 chr5A 85.817 416 51 4 3574 3986 283627122 283627532 6.450000e-118 435.0
38 TraesCS6B01G451800 chr5A 93.548 93 6 0 3998 4090 283628042 283628134 5.670000e-29 139.0
39 TraesCS6B01G451800 chr5B 83.771 419 57 4 3574 3986 231272495 231272908 1.830000e-103 387.0
40 TraesCS6B01G451800 chr5D 82.353 425 58 4 3574 3986 215477056 215477475 1.860000e-93 353.0
41 TraesCS6B01G451800 chr3A 85.196 331 42 7 2363 2689 665961906 665961579 2.420000e-87 333.0
42 TraesCS6B01G451800 chr7D 100.000 31 0 0 3357 3387 378322265 378322295 1.630000e-04 58.4
43 TraesCS6B01G451800 chr7A 100.000 31 0 0 3357 3387 426576364 426576394 1.630000e-04 58.4
44 TraesCS6B01G451800 chr1A 100.000 28 0 0 3359 3386 387028367 387028394 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G451800 chr6B 710316072 710320274 4202 True 7762.000000 7762 100.000000 1 4203 1 chr6B.!!$R2 4202
1 TraesCS6B01G451800 chr6B 711724047 711725842 1795 False 1567.000000 1567 82.671000 1294 3077 1 chr6B.!!$F3 1783
2 TraesCS6B01G451800 chr6B 645653324 645655246 1922 False 1522.000000 1522 81.307000 1150 3089 1 chr6B.!!$F1 1939
3 TraesCS6B01G451800 chr6B 646008425 646010226 1801 True 1465.000000 1465 81.679000 1294 3094 1 chr6B.!!$R1 1800
4 TraesCS6B01G451800 chr6B 711654274 711655456 1182 True 1155.000000 1155 84.499000 1464 2635 1 chr6B.!!$R7 1171
5 TraesCS6B01G451800 chr6D 465345793 465348482 2689 True 4318.000000 4318 95.733000 708 3383 1 chr6D.!!$R1 2675
6 TraesCS6B01G451800 chr6D 428960098 428962028 1930 False 1496.000000 1496 81.022000 1150 3089 1 chr6D.!!$F1 1939
7 TraesCS6B01G451800 chr6A 574220484 574222411 1927 True 1487.000000 1487 80.998000 1150 3094 1 chr6A.!!$R1 1944
8 TraesCS6B01G451800 chr6A 573636262 573638071 1809 False 1448.000000 1448 81.443000 1279 3089 1 chr6A.!!$F1 1810
9 TraesCS6B01G451800 chr6A 612567358 612568152 794 True 743.000000 743 84.025000 2306 3077 1 chr6A.!!$R3 771
10 TraesCS6B01G451800 chr6A 613078986 613081309 2323 False 624.666667 1537 86.804333 761 3077 3 chr6A.!!$F4 2316
11 TraesCS6B01G451800 chr6A 611922392 611923669 1277 True 280.500000 453 88.173000 3575 4165 2 chr6A.!!$R4 590
12 TraesCS6B01G451800 chr7B 591391489 591392166 677 True 1125.000000 1125 96.608000 1 678 1 chr7B.!!$R1 677
13 TraesCS6B01G451800 chr3D 445317804 445318466 662 True 1044.000000 1044 94.940000 1 672 1 chr3D.!!$R1 671
14 TraesCS6B01G451800 chr3D 464051502 464052602 1100 False 758.000000 758 79.717000 1894 2987 1 chr3D.!!$F1 1093
15 TraesCS6B01G451800 chr3B 702688055 702688768 713 True 551.000000 551 81.058000 2290 2987 1 chr3B.!!$R1 697
16 TraesCS6B01G451800 chr5A 283627122 283628134 1012 False 287.000000 435 89.682500 3574 4090 2 chr5A.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
915 916 0.036875 AGAAACAGGCCCTCTTTCGG 59.963 55.0 0.0 0.0 0.00 4.30 F
1839 1960 0.040067 CACAAAAGGTCGCTTCAGCC 60.040 55.0 0.0 0.0 37.91 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2369 2501 0.533032 TCCACAACACACGACACTCA 59.467 50.0 0.00 0.00 0.00 3.41 R
3606 3842 0.039256 ATGTTGCAACACCGCATCAC 60.039 50.0 33.29 2.32 42.63 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 6.494491 TCAATGAGGATGGTTCAATCAAAACT 59.506 34.615 0.00 0.00 0.00 2.66
119 120 1.488812 AGTACCAAGACACAACCTGCA 59.511 47.619 0.00 0.00 0.00 4.41
135 136 2.492881 CCTGCATGTTGTTCAATGGCTA 59.507 45.455 0.00 0.00 0.00 3.93
210 211 6.772360 TTCATAAAGCATACATTTCCAGCA 57.228 33.333 0.00 0.00 0.00 4.41
417 418 3.005472 AGCTCAAGTTACTTACGCTGTCA 59.995 43.478 15.98 0.00 30.74 3.58
457 458 8.780249 TCTACTGTTTTACTTTTCACCTTATGC 58.220 33.333 0.00 0.00 0.00 3.14
499 500 4.048241 ACTTTCTCGCCTATAAGTGAGC 57.952 45.455 6.99 0.00 42.84 4.26
539 540 5.930135 AGGTAGCGTGAATTGATCCTATTT 58.070 37.500 0.00 0.00 0.00 1.40
672 673 0.325671 ACACCCGGGATCTGACAGAT 60.326 55.000 32.02 17.98 37.73 2.90
678 679 1.339610 CGGGATCTGACAGATCTCCAC 59.660 57.143 33.74 21.85 46.99 4.02
679 680 2.676748 GGGATCTGACAGATCTCCACT 58.323 52.381 33.74 8.58 44.59 4.00
680 681 2.627699 GGGATCTGACAGATCTCCACTC 59.372 54.545 33.74 20.99 44.59 3.51
681 682 3.691020 GGGATCTGACAGATCTCCACTCT 60.691 52.174 33.74 7.20 44.59 3.24
682 683 4.836125 GATCTGACAGATCTCCACTCTC 57.164 50.000 30.22 9.20 45.83 3.20
683 684 4.464008 GATCTGACAGATCTCCACTCTCT 58.536 47.826 30.22 2.63 45.83 3.10
684 685 3.884895 TCTGACAGATCTCCACTCTCTC 58.115 50.000 0.00 0.00 0.00 3.20
685 686 2.613595 CTGACAGATCTCCACTCTCTCG 59.386 54.545 0.00 0.00 0.00 4.04
686 687 1.333619 GACAGATCTCCACTCTCTCGC 59.666 57.143 0.00 0.00 0.00 5.03
687 688 0.667993 CAGATCTCCACTCTCTCGCC 59.332 60.000 0.00 0.00 0.00 5.54
688 689 0.817634 AGATCTCCACTCTCTCGCCG 60.818 60.000 0.00 0.00 0.00 6.46
689 690 1.077357 ATCTCCACTCTCTCGCCGT 60.077 57.895 0.00 0.00 0.00 5.68
690 691 1.098712 ATCTCCACTCTCTCGCCGTC 61.099 60.000 0.00 0.00 0.00 4.79
691 692 3.102107 CTCCACTCTCTCGCCGTCG 62.102 68.421 0.00 0.00 0.00 5.12
692 693 4.838486 CCACTCTCTCGCCGTCGC 62.838 72.222 0.00 0.00 35.26 5.19
693 694 4.838486 CACTCTCTCGCCGTCGCC 62.838 72.222 0.00 0.00 35.26 5.54
834 835 4.393155 AGCCGCAGTCCGCAATCA 62.393 61.111 0.00 0.00 42.60 2.57
843 844 0.242017 GTCCGCAATCAAAGCAGCTT 59.758 50.000 0.21 0.21 0.00 3.74
879 880 1.656652 ATCGGGAATCAAAGCAGTCG 58.343 50.000 0.00 0.00 0.00 4.18
915 916 0.036875 AGAAACAGGCCCTCTTTCGG 59.963 55.000 0.00 0.00 0.00 4.30
980 1030 3.135712 AGAGGAGACGATCAGCTCTCTTA 59.864 47.826 10.57 0.00 34.44 2.10
1053 1103 1.203523 GTGAGTTCGTCCTCATGCTCT 59.796 52.381 9.39 0.00 43.03 4.09
1103 1154 3.177228 AGATCCTCTTACAACAGCACCT 58.823 45.455 0.00 0.00 0.00 4.00
1109 1160 4.520492 CCTCTTACAACAGCACCTCAAAAT 59.480 41.667 0.00 0.00 0.00 1.82
1111 1162 6.206634 CCTCTTACAACAGCACCTCAAAATAA 59.793 38.462 0.00 0.00 0.00 1.40
1115 1166 9.260002 CTTACAACAGCACCTCAAAATAAAAAT 57.740 29.630 0.00 0.00 0.00 1.82
1190 1247 7.445707 TGGTCAAAATTTAACCTTTTTATGGGC 59.554 33.333 18.50 0.00 34.05 5.36
1200 1259 9.883142 TTAACCTTTTTATGGGCAAATATCAAG 57.117 29.630 0.00 0.00 0.00 3.02
1218 1277 6.932356 ATCAAGATTGCGTCATTCTATTGT 57.068 33.333 5.21 0.00 0.00 2.71
1273 1344 8.758633 TTTTTCTCTCGGAAGTATAAAGACTG 57.241 34.615 0.00 0.00 35.16 3.51
1274 1345 7.463961 TTTCTCTCGGAAGTATAAAGACTGT 57.536 36.000 0.00 0.00 35.16 3.55
1275 1346 6.680874 TCTCTCGGAAGTATAAAGACTGTC 57.319 41.667 0.00 0.00 0.00 3.51
1276 1347 6.416415 TCTCTCGGAAGTATAAAGACTGTCT 58.584 40.000 4.06 4.06 0.00 3.41
1277 1348 7.563020 TCTCTCGGAAGTATAAAGACTGTCTA 58.437 38.462 11.30 0.00 0.00 2.59
1280 1351 8.838365 TCTCGGAAGTATAAAGACTGTCTAATC 58.162 37.037 11.30 2.51 0.00 1.75
1292 1363 6.906659 AGACTGTCTAATCAAAATTGTGCAG 58.093 36.000 8.91 0.00 0.00 4.41
1308 1422 1.266718 TGCAGTCAAAATTGCGTCTCC 59.733 47.619 0.00 0.00 40.78 3.71
1309 1423 1.266718 GCAGTCAAAATTGCGTCTCCA 59.733 47.619 0.00 0.00 0.00 3.86
1421 1535 3.490759 GCGCCGGTGATGTGACTG 61.491 66.667 21.76 0.00 0.00 3.51
1459 1577 7.977853 ACTCTGATTTGTTTCCATATCAAATGC 59.022 33.333 7.01 1.71 40.38 3.56
1590 1708 3.248043 TTGGAAACAGATCCCTGCG 57.752 52.632 0.00 0.00 44.16 5.18
1616 1734 3.071479 TCTCAAAGGTTGTTATCGTGGC 58.929 45.455 0.00 0.00 0.00 5.01
1620 1738 0.981183 AGGTTGTTATCGTGGCTGGA 59.019 50.000 0.00 0.00 0.00 3.86
1838 1959 0.663153 ACACAAAAGGTCGCTTCAGC 59.337 50.000 0.00 0.00 37.78 4.26
1839 1960 0.040067 CACAAAAGGTCGCTTCAGCC 60.040 55.000 0.00 0.00 37.91 4.85
1878 1999 1.609208 AGGTGCGCAGAAATTGTTCT 58.391 45.000 12.22 0.00 45.36 3.01
2193 2317 8.909708 TGAAATTTAATGCTTTTATGTCTCCG 57.090 30.769 0.00 0.00 0.00 4.63
2304 2428 1.352156 GCGAGTTGCTGGGTAAGACG 61.352 60.000 0.00 0.00 41.73 4.18
2314 2438 0.468648 GGGTAAGACGGCCATAAGCT 59.531 55.000 2.24 0.00 43.05 3.74
2315 2439 1.134189 GGGTAAGACGGCCATAAGCTT 60.134 52.381 3.48 3.48 43.05 3.74
2369 2501 3.904339 AGTGGAGGTCTACAATGTTGTCT 59.096 43.478 0.99 0.00 42.35 3.41
2436 2586 4.008074 ACATACTTCTGCATTATCCCCG 57.992 45.455 0.00 0.00 0.00 5.73
2776 3003 2.904434 GGAGGTGAGGAAGAGGTTTACA 59.096 50.000 0.00 0.00 0.00 2.41
2806 3033 5.047943 CGAGAAGAAGGACAAAGGACTAGAA 60.048 44.000 0.00 0.00 0.00 2.10
2852 3079 1.310933 GCACCACAATCTGGCTGAGG 61.311 60.000 0.00 0.00 45.32 3.86
2909 3142 2.905075 TGAGGTATGCCAGAAATGTCG 58.095 47.619 1.54 0.00 37.19 4.35
3013 3246 2.167693 GTGGACATGGACGGAGATGTTA 59.832 50.000 0.00 0.00 32.85 2.41
3073 3309 0.462759 CCAGGATTCACTTCCCGAGC 60.463 60.000 0.00 0.00 36.35 5.03
3136 3372 6.813152 CGTCTAGAATTTTGGCAAATGGAAAT 59.187 34.615 14.29 0.56 32.57 2.17
3156 3392 6.581919 GGAAATTGCCAATGTTTGTTATTTGC 59.418 34.615 0.00 0.00 0.00 3.68
3237 3473 2.669434 GACAAAGCGTGTTATAGCCGAA 59.331 45.455 0.00 0.00 41.96 4.30
3248 3484 6.183360 CGTGTTATAGCCGAAAGAACATTTCT 60.183 38.462 0.00 0.00 43.15 2.52
3295 3531 1.284657 CATCTGTCAGCGTTAGCCTG 58.715 55.000 0.00 0.00 46.67 4.85
3353 3589 4.303086 ACGAGTATAATCCTTCACCACG 57.697 45.455 0.00 0.00 0.00 4.94
3368 3604 1.080995 CCACGCAGAGCTTCTAGCAC 61.081 60.000 1.09 0.00 45.56 4.40
3383 3619 2.159179 AGCACTGGGTTTGTCCTTTT 57.841 45.000 0.00 0.00 36.25 2.27
3384 3620 2.466846 AGCACTGGGTTTGTCCTTTTT 58.533 42.857 0.00 0.00 36.25 1.94
3385 3621 3.637769 AGCACTGGGTTTGTCCTTTTTA 58.362 40.909 0.00 0.00 36.25 1.52
3386 3622 4.223144 AGCACTGGGTTTGTCCTTTTTAT 58.777 39.130 0.00 0.00 36.25 1.40
3387 3623 4.039124 AGCACTGGGTTTGTCCTTTTTATG 59.961 41.667 0.00 0.00 36.25 1.90
3388 3624 4.202212 GCACTGGGTTTGTCCTTTTTATGT 60.202 41.667 0.00 0.00 36.25 2.29
3389 3625 5.010213 GCACTGGGTTTGTCCTTTTTATGTA 59.990 40.000 0.00 0.00 36.25 2.29
3390 3626 6.295067 GCACTGGGTTTGTCCTTTTTATGTAT 60.295 38.462 0.00 0.00 36.25 2.29
3391 3627 7.312899 CACTGGGTTTGTCCTTTTTATGTATC 58.687 38.462 0.00 0.00 36.25 2.24
3392 3628 6.436218 ACTGGGTTTGTCCTTTTTATGTATCC 59.564 38.462 0.00 0.00 36.25 2.59
3393 3629 6.315714 TGGGTTTGTCCTTTTTATGTATCCA 58.684 36.000 0.00 0.00 36.25 3.41
3394 3630 6.957020 TGGGTTTGTCCTTTTTATGTATCCAT 59.043 34.615 0.00 0.00 36.25 3.41
3395 3631 7.093552 TGGGTTTGTCCTTTTTATGTATCCATG 60.094 37.037 0.00 0.00 36.25 3.66
3396 3632 7.123547 GGGTTTGTCCTTTTTATGTATCCATGA 59.876 37.037 0.00 0.00 36.25 3.07
3397 3633 8.695456 GGTTTGTCCTTTTTATGTATCCATGAT 58.305 33.333 0.00 0.00 32.29 2.45
3398 3634 9.736023 GTTTGTCCTTTTTATGTATCCATGATC 57.264 33.333 0.00 0.00 32.29 2.92
3399 3635 9.699410 TTTGTCCTTTTTATGTATCCATGATCT 57.301 29.630 0.00 0.00 32.29 2.75
3400 3636 9.699410 TTGTCCTTTTTATGTATCCATGATCTT 57.301 29.630 0.00 0.00 32.29 2.40
3401 3637 9.123902 TGTCCTTTTTATGTATCCATGATCTTG 57.876 33.333 0.00 1.60 32.29 3.02
3402 3638 8.571336 GTCCTTTTTATGTATCCATGATCTTGG 58.429 37.037 19.32 19.32 38.18 3.61
3403 3639 7.725397 TCCTTTTTATGTATCCATGATCTTGGG 59.275 37.037 23.54 9.24 37.37 4.12
3404 3640 7.725397 CCTTTTTATGTATCCATGATCTTGGGA 59.275 37.037 23.54 13.85 37.37 4.37
3405 3641 9.135189 CTTTTTATGTATCCATGATCTTGGGAA 57.865 33.333 23.54 11.83 37.37 3.97
3406 3642 8.463930 TTTTATGTATCCATGATCTTGGGAAC 57.536 34.615 23.54 20.62 37.37 3.62
3407 3643 6.126863 TATGTATCCATGATCTTGGGAACC 57.873 41.667 23.54 12.07 40.12 3.62
3408 3644 5.610557 TATGTATCCATGATCTTGGGAACCA 59.389 40.000 23.54 16.14 44.97 3.67
3409 3645 6.239973 TATGTATCCATGATCTTGGGAACCAG 60.240 42.308 23.54 1.05 46.31 4.00
3410 3646 8.359762 TATGTATCCATGATCTTGGGAACCAGA 61.360 40.741 23.54 12.05 46.31 3.86
3437 3673 4.947645 TGGAAACCAGATCTTGCAAAAAG 58.052 39.130 0.00 0.00 0.00 2.27
3438 3674 4.648762 TGGAAACCAGATCTTGCAAAAAGA 59.351 37.500 0.00 0.00 0.00 2.52
3439 3675 5.305128 TGGAAACCAGATCTTGCAAAAAGAT 59.695 36.000 0.00 0.00 39.53 2.40
3440 3676 6.493115 TGGAAACCAGATCTTGCAAAAAGATA 59.507 34.615 0.00 0.00 37.14 1.98
3441 3677 6.808704 GGAAACCAGATCTTGCAAAAAGATAC 59.191 38.462 0.00 0.00 37.14 2.24
3442 3678 5.551760 ACCAGATCTTGCAAAAAGATACG 57.448 39.130 0.00 0.00 37.14 3.06
3443 3679 4.396166 ACCAGATCTTGCAAAAAGATACGG 59.604 41.667 0.00 6.56 37.14 4.02
3444 3680 4.201950 CCAGATCTTGCAAAAAGATACGGG 60.202 45.833 0.00 1.73 37.14 5.28
3445 3681 3.378427 AGATCTTGCAAAAAGATACGGGC 59.622 43.478 0.00 0.00 37.14 6.13
3446 3682 2.509569 TCTTGCAAAAAGATACGGGCA 58.490 42.857 0.00 0.00 0.00 5.36
3447 3683 2.227865 TCTTGCAAAAAGATACGGGCAC 59.772 45.455 0.00 0.00 0.00 5.01
3448 3684 1.904287 TGCAAAAAGATACGGGCACT 58.096 45.000 0.00 0.00 0.00 4.40
3449 3685 3.060736 TGCAAAAAGATACGGGCACTA 57.939 42.857 0.00 0.00 0.00 2.74
3450 3686 2.745281 TGCAAAAAGATACGGGCACTAC 59.255 45.455 0.00 0.00 0.00 2.73
3451 3687 2.745281 GCAAAAAGATACGGGCACTACA 59.255 45.455 0.00 0.00 0.00 2.74
3452 3688 3.377172 GCAAAAAGATACGGGCACTACAT 59.623 43.478 0.00 0.00 0.00 2.29
3453 3689 4.142469 GCAAAAAGATACGGGCACTACATT 60.142 41.667 0.00 0.00 0.00 2.71
3454 3690 5.569413 CAAAAAGATACGGGCACTACATTC 58.431 41.667 0.00 0.00 0.00 2.67
3455 3691 2.795175 AGATACGGGCACTACATTCG 57.205 50.000 0.00 0.00 0.00 3.34
3456 3692 2.304092 AGATACGGGCACTACATTCGA 58.696 47.619 0.00 0.00 0.00 3.71
3457 3693 2.691526 AGATACGGGCACTACATTCGAA 59.308 45.455 0.00 0.00 0.00 3.71
3458 3694 2.282701 TACGGGCACTACATTCGAAC 57.717 50.000 0.00 0.00 0.00 3.95
3459 3695 0.390735 ACGGGCACTACATTCGAACC 60.391 55.000 0.00 0.00 0.00 3.62
3460 3696 0.390603 CGGGCACTACATTCGAACCA 60.391 55.000 0.00 0.00 0.00 3.67
3461 3697 1.742411 CGGGCACTACATTCGAACCAT 60.742 52.381 0.00 0.00 0.00 3.55
3462 3698 2.482316 CGGGCACTACATTCGAACCATA 60.482 50.000 0.00 0.00 0.00 2.74
3463 3699 3.131396 GGGCACTACATTCGAACCATAG 58.869 50.000 0.00 5.34 0.00 2.23
3464 3700 3.181469 GGGCACTACATTCGAACCATAGA 60.181 47.826 15.47 0.00 0.00 1.98
3465 3701 3.802685 GGCACTACATTCGAACCATAGAC 59.197 47.826 15.47 8.98 0.00 2.59
3466 3702 3.802685 GCACTACATTCGAACCATAGACC 59.197 47.826 15.47 5.63 0.00 3.85
3467 3703 4.042398 CACTACATTCGAACCATAGACCG 58.958 47.826 15.47 0.00 0.00 4.79
3468 3704 3.698040 ACTACATTCGAACCATAGACCGT 59.302 43.478 15.47 0.75 0.00 4.83
3469 3705 3.160777 ACATTCGAACCATAGACCGTC 57.839 47.619 0.00 0.00 0.00 4.79
3470 3706 2.494471 ACATTCGAACCATAGACCGTCA 59.506 45.455 0.00 0.00 0.00 4.35
3471 3707 3.056393 ACATTCGAACCATAGACCGTCAA 60.056 43.478 0.00 0.00 0.00 3.18
3472 3708 2.933495 TCGAACCATAGACCGTCAAG 57.067 50.000 0.40 0.00 0.00 3.02
3473 3709 2.165167 TCGAACCATAGACCGTCAAGT 58.835 47.619 0.40 0.00 0.00 3.16
3474 3710 2.163010 TCGAACCATAGACCGTCAAGTC 59.837 50.000 0.40 0.00 37.01 3.01
3475 3711 2.094906 CGAACCATAGACCGTCAAGTCA 60.095 50.000 0.40 0.00 39.34 3.41
3476 3712 3.428999 CGAACCATAGACCGTCAAGTCAT 60.429 47.826 0.40 0.00 39.34 3.06
3477 3713 4.201980 CGAACCATAGACCGTCAAGTCATA 60.202 45.833 0.40 0.00 39.34 2.15
3478 3714 4.920640 ACCATAGACCGTCAAGTCATAG 57.079 45.455 0.40 0.00 39.34 2.23
3479 3715 3.637229 ACCATAGACCGTCAAGTCATAGG 59.363 47.826 0.40 0.00 39.34 2.57
3480 3716 3.005897 CCATAGACCGTCAAGTCATAGGG 59.994 52.174 0.40 0.00 39.34 3.53
3481 3717 1.486211 AGACCGTCAAGTCATAGGGG 58.514 55.000 0.40 0.00 39.34 4.79
3482 3718 1.006758 AGACCGTCAAGTCATAGGGGA 59.993 52.381 0.40 0.00 39.34 4.81
3483 3719 1.829222 GACCGTCAAGTCATAGGGGAA 59.171 52.381 0.00 0.00 36.73 3.97
3484 3720 2.235402 GACCGTCAAGTCATAGGGGAAA 59.765 50.000 0.00 0.00 36.73 3.13
3485 3721 2.640826 ACCGTCAAGTCATAGGGGAAAA 59.359 45.455 0.00 0.00 0.00 2.29
3486 3722 3.265995 ACCGTCAAGTCATAGGGGAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
3487 3723 3.627577 CCGTCAAGTCATAGGGGAAAATG 59.372 47.826 0.00 0.00 0.00 2.32
3488 3724 4.513442 CGTCAAGTCATAGGGGAAAATGA 58.487 43.478 0.00 0.00 0.00 2.57
3489 3725 4.941263 CGTCAAGTCATAGGGGAAAATGAA 59.059 41.667 0.00 0.00 34.06 2.57
3490 3726 5.163754 CGTCAAGTCATAGGGGAAAATGAAC 60.164 44.000 0.00 0.00 34.06 3.18
3491 3727 5.946377 GTCAAGTCATAGGGGAAAATGAACT 59.054 40.000 0.00 0.00 34.06 3.01
3492 3728 7.110155 GTCAAGTCATAGGGGAAAATGAACTA 58.890 38.462 0.00 0.00 34.06 2.24
3493 3729 7.775561 GTCAAGTCATAGGGGAAAATGAACTAT 59.224 37.037 0.00 0.00 34.06 2.12
3494 3730 8.336235 TCAAGTCATAGGGGAAAATGAACTATT 58.664 33.333 0.00 0.00 34.06 1.73
3495 3731 9.627123 CAAGTCATAGGGGAAAATGAACTATTA 57.373 33.333 0.00 0.00 34.06 0.98
3496 3732 9.853177 AAGTCATAGGGGAAAATGAACTATTAG 57.147 33.333 0.00 0.00 34.06 1.73
3497 3733 9.225682 AGTCATAGGGGAAAATGAACTATTAGA 57.774 33.333 0.00 0.00 34.06 2.10
3498 3734 9.847224 GTCATAGGGGAAAATGAACTATTAGAA 57.153 33.333 0.00 0.00 34.06 2.10
3529 3765 4.946478 GCTAGAGCTTTAATCTCCCTCA 57.054 45.455 0.00 0.00 38.21 3.86
3530 3766 5.283457 GCTAGAGCTTTAATCTCCCTCAA 57.717 43.478 0.00 0.00 38.21 3.02
3531 3767 5.296748 GCTAGAGCTTTAATCTCCCTCAAG 58.703 45.833 0.00 0.00 38.21 3.02
3532 3768 5.069781 GCTAGAGCTTTAATCTCCCTCAAGA 59.930 44.000 0.00 0.00 38.21 3.02
3533 3769 5.351948 AGAGCTTTAATCTCCCTCAAGAC 57.648 43.478 0.00 0.00 0.00 3.01
3534 3770 4.780021 AGAGCTTTAATCTCCCTCAAGACA 59.220 41.667 0.00 0.00 0.00 3.41
3535 3771 5.249393 AGAGCTTTAATCTCCCTCAAGACAA 59.751 40.000 0.00 0.00 0.00 3.18
3536 3772 5.249420 AGCTTTAATCTCCCTCAAGACAAC 58.751 41.667 0.00 0.00 0.00 3.32
3537 3773 5.003804 GCTTTAATCTCCCTCAAGACAACA 58.996 41.667 0.00 0.00 0.00 3.33
3538 3774 5.106515 GCTTTAATCTCCCTCAAGACAACAC 60.107 44.000 0.00 0.00 0.00 3.32
3539 3775 3.425162 AATCTCCCTCAAGACAACACC 57.575 47.619 0.00 0.00 0.00 4.16
3540 3776 1.801242 TCTCCCTCAAGACAACACCA 58.199 50.000 0.00 0.00 0.00 4.17
3541 3777 2.338809 TCTCCCTCAAGACAACACCAT 58.661 47.619 0.00 0.00 0.00 3.55
3542 3778 2.303022 TCTCCCTCAAGACAACACCATC 59.697 50.000 0.00 0.00 0.00 3.51
3543 3779 2.304180 CTCCCTCAAGACAACACCATCT 59.696 50.000 0.00 0.00 0.00 2.90
3544 3780 3.515502 CTCCCTCAAGACAACACCATCTA 59.484 47.826 0.00 0.00 0.00 1.98
3545 3781 3.260884 TCCCTCAAGACAACACCATCTAC 59.739 47.826 0.00 0.00 0.00 2.59
3546 3782 3.007940 CCCTCAAGACAACACCATCTACA 59.992 47.826 0.00 0.00 0.00 2.74
3547 3783 4.323792 CCCTCAAGACAACACCATCTACAT 60.324 45.833 0.00 0.00 0.00 2.29
3548 3784 5.104941 CCCTCAAGACAACACCATCTACATA 60.105 44.000 0.00 0.00 0.00 2.29
3549 3785 6.406370 CCTCAAGACAACACCATCTACATAA 58.594 40.000 0.00 0.00 0.00 1.90
3550 3786 7.050377 CCTCAAGACAACACCATCTACATAAT 58.950 38.462 0.00 0.00 0.00 1.28
3551 3787 7.225538 CCTCAAGACAACACCATCTACATAATC 59.774 40.741 0.00 0.00 0.00 1.75
3552 3788 7.851228 TCAAGACAACACCATCTACATAATCT 58.149 34.615 0.00 0.00 0.00 2.40
3553 3789 8.977412 TCAAGACAACACCATCTACATAATCTA 58.023 33.333 0.00 0.00 0.00 1.98
3554 3790 9.770097 CAAGACAACACCATCTACATAATCTAT 57.230 33.333 0.00 0.00 0.00 1.98
3570 3806 8.467598 ACATAATCTATATATGTCCGACACACC 58.532 37.037 2.57 0.00 39.20 4.16
3571 3807 5.562506 ATCTATATATGTCCGACACACCG 57.437 43.478 2.57 0.00 38.04 4.94
3572 3808 4.644498 TCTATATATGTCCGACACACCGA 58.356 43.478 2.57 0.00 38.04 4.69
3587 3823 2.099098 ACACCGAAGCTGAACTTTTTGG 59.901 45.455 0.00 0.00 39.29 3.28
3593 3829 4.686972 GAAGCTGAACTTTTTGGCTTTCT 58.313 39.130 0.00 0.00 42.25 2.52
3606 3842 3.424703 TGGCTTTCTTGATTCCTGGAAG 58.575 45.455 15.34 0.82 0.00 3.46
3658 3894 4.113354 CCTGCTAGTCGAAGTTGGAATAC 58.887 47.826 0.00 0.00 0.00 1.89
3687 3926 3.700538 CATATATTGTGGACCATGGGGG 58.299 50.000 18.09 0.00 44.81 5.40
3715 3954 3.087031 AGGTTGAGAATGCATCTGTTGG 58.913 45.455 0.00 0.00 38.96 3.77
3726 3965 2.816087 GCATCTGTTGGTGTGATGAGTT 59.184 45.455 6.41 0.00 39.72 3.01
3761 4000 5.240623 TGGTATGATTGACCTGTTTGTGAAC 59.759 40.000 0.00 0.00 37.88 3.18
3796 4036 1.678970 AGGAAATCCTTGTGGCGGC 60.679 57.895 0.00 0.00 46.09 6.53
3797 4037 2.710902 GGAAATCCTTGTGGCGGCC 61.711 63.158 13.32 13.32 0.00 6.13
3798 4038 3.051392 GAAATCCTTGTGGCGGCCG 62.051 63.158 24.05 24.05 0.00 6.13
3820 4060 2.367377 CTGGGGAGGGATGCTGGA 60.367 66.667 0.00 0.00 0.00 3.86
3822 4065 1.992519 CTGGGGAGGGATGCTGGAAG 61.993 65.000 0.00 0.00 0.00 3.46
3824 4067 1.694169 GGGAGGGATGCTGGAAGGA 60.694 63.158 0.00 0.00 40.11 3.36
3832 4075 2.450476 GATGCTGGAAGGAATTGGTGT 58.550 47.619 0.00 0.00 38.32 4.16
3857 4100 3.618019 GCTGAAAATGATGCCCATGTTGT 60.618 43.478 0.00 0.00 32.94 3.32
3886 4129 4.090819 TGTGGTGTATGCTGAGTACCTTA 58.909 43.478 0.00 0.00 32.68 2.69
3895 4138 3.263261 GCTGAGTACCTTAAGGAGCAAC 58.737 50.000 28.52 17.97 38.94 4.17
3931 4174 6.508777 GTTGGCCTTACAACTGAAATTTACA 58.491 36.000 3.32 0.00 45.49 2.41
3934 4177 6.999272 TGGCCTTACAACTGAAATTTACACTA 59.001 34.615 3.32 0.00 0.00 2.74
3945 4188 3.604875 ATTTACACTACGGAGGGTGTG 57.395 47.619 14.48 0.00 44.84 3.82
3946 4189 1.259609 TTACACTACGGAGGGTGTGG 58.740 55.000 14.48 0.00 44.84 4.17
3949 4192 0.037605 CACTACGGAGGGTGTGGAAC 60.038 60.000 0.00 0.00 32.55 3.62
3974 4217 4.384056 CAGGATGCCGAAGATCAACTAAT 58.616 43.478 0.00 0.00 0.00 1.73
3994 4755 1.788229 TGTTGGTGAGACTGTCAGGA 58.212 50.000 10.88 0.00 35.13 3.86
3996 4757 1.412710 GTTGGTGAGACTGTCAGGACA 59.587 52.381 10.88 1.70 35.13 4.02
4010 4771 1.280133 CAGGACAGCAGGAATTGAGGA 59.720 52.381 0.00 0.00 0.00 3.71
4033 4794 1.283029 AGCATATGGAGCAGGTTGTGT 59.717 47.619 4.56 0.00 0.00 3.72
4040 4801 1.610886 GGAGCAGGTTGTGTAGGAACC 60.611 57.143 0.00 0.00 42.91 3.62
4055 4816 1.200948 GGAACCTGAGCAACATTCTGC 59.799 52.381 0.00 0.00 42.97 4.26
4092 5074 2.502130 TGAGGTTGTGTGTACTGTTCCA 59.498 45.455 0.00 0.00 0.00 3.53
4098 5080 1.867233 GTGTGTACTGTTCCAGCTGTG 59.133 52.381 13.81 4.33 34.37 3.66
4106 5088 1.529010 TTCCAGCTGTGGTTGCAGG 60.529 57.895 13.81 0.00 45.28 4.85
4108 5090 1.073025 CCAGCTGTGGTTGCAGGTA 59.927 57.895 13.81 0.00 44.27 3.08
4121 5103 3.056628 CAGGTAGCACTGCTGTAGC 57.943 57.895 14.15 4.38 40.10 3.58
4165 5147 1.949847 AACTGCAGACGGATCTCGGG 61.950 60.000 23.35 0.00 44.45 5.14
4166 5148 2.362503 TGCAGACGGATCTCGGGT 60.363 61.111 8.20 0.00 44.45 5.28
4167 5149 2.105128 GCAGACGGATCTCGGGTG 59.895 66.667 8.20 6.03 44.45 4.61
4168 5150 2.415608 GCAGACGGATCTCGGGTGA 61.416 63.158 8.20 0.00 44.45 4.02
4169 5151 1.433879 CAGACGGATCTCGGGTGAC 59.566 63.158 8.20 0.00 44.45 3.67
4170 5152 1.032657 CAGACGGATCTCGGGTGACT 61.033 60.000 8.20 0.00 44.45 3.41
4171 5153 1.032657 AGACGGATCTCGGGTGACTG 61.033 60.000 8.20 0.00 44.45 3.51
4172 5154 2.105128 CGGATCTCGGGTGACTGC 59.895 66.667 0.00 0.00 36.33 4.40
4173 5155 2.501610 GGATCTCGGGTGACTGCC 59.498 66.667 0.00 0.00 36.33 4.85
4174 5156 2.359169 GGATCTCGGGTGACTGCCA 61.359 63.158 0.00 0.00 36.33 4.92
4175 5157 1.142748 GATCTCGGGTGACTGCCAG 59.857 63.158 0.00 0.00 36.33 4.85
4176 5158 2.303549 GATCTCGGGTGACTGCCAGG 62.304 65.000 0.00 0.00 36.33 4.45
4177 5159 4.087892 CTCGGGTGACTGCCAGGG 62.088 72.222 0.00 0.00 36.33 4.45
4178 5160 4.954118 TCGGGTGACTGCCAGGGT 62.954 66.667 0.00 0.00 36.33 4.34
4179 5161 4.394712 CGGGTGACTGCCAGGGTC 62.395 72.222 0.00 0.00 0.00 4.46
4180 5162 4.394712 GGGTGACTGCCAGGGTCG 62.395 72.222 0.00 0.00 36.58 4.79
4181 5163 3.626924 GGTGACTGCCAGGGTCGT 61.627 66.667 0.00 0.00 36.58 4.34
4182 5164 2.426023 GTGACTGCCAGGGTCGTT 59.574 61.111 0.00 0.00 36.58 3.85
4183 5165 1.961277 GTGACTGCCAGGGTCGTTG 60.961 63.158 0.00 0.00 36.58 4.10
4184 5166 3.050275 GACTGCCAGGGTCGTTGC 61.050 66.667 0.00 0.00 0.00 4.17
4185 5167 3.825160 GACTGCCAGGGTCGTTGCA 62.825 63.158 0.00 0.00 0.00 4.08
4186 5168 3.052082 CTGCCAGGGTCGTTGCAG 61.052 66.667 0.00 0.00 44.43 4.41
4189 5171 3.052082 CCAGGGTCGTTGCAGCTG 61.052 66.667 10.11 10.11 0.00 4.24
4190 5172 2.031012 CAGGGTCGTTGCAGCTGA 59.969 61.111 20.43 0.00 0.00 4.26
4191 5173 1.376424 CAGGGTCGTTGCAGCTGAT 60.376 57.895 20.43 0.00 0.00 2.90
4192 5174 1.376424 AGGGTCGTTGCAGCTGATG 60.376 57.895 20.43 2.65 0.00 3.07
4193 5175 1.375908 GGGTCGTTGCAGCTGATGA 60.376 57.895 20.43 5.46 0.00 2.92
4194 5176 1.639298 GGGTCGTTGCAGCTGATGAC 61.639 60.000 20.43 17.65 0.00 3.06
4195 5177 0.671781 GGTCGTTGCAGCTGATGACT 60.672 55.000 20.43 0.00 33.39 3.41
4196 5178 0.441533 GTCGTTGCAGCTGATGACTG 59.558 55.000 20.43 8.57 38.22 3.51
4201 5183 4.273811 CAGCTGATGACTGCGTGT 57.726 55.556 8.42 0.00 43.89 4.49
4202 5184 2.536725 CAGCTGATGACTGCGTGTT 58.463 52.632 8.42 0.00 43.89 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 0.676466 CAAGCACCATAGCCGGTTCA 60.676 55.000 1.90 0.00 37.07 3.18
119 120 6.392354 CACTGAATTAGCCATTGAACAACAT 58.608 36.000 0.00 0.00 0.00 2.71
135 136 2.971330 TGCCATGTTTTCCCACTGAATT 59.029 40.909 0.00 0.00 31.67 2.17
210 211 4.318831 GCTTGAGTTGTCGAACGAAAGAAT 60.319 41.667 0.00 0.00 37.15 2.40
417 418 1.112113 AGTAGATGCATCCGACGGTT 58.888 50.000 23.06 1.91 0.00 4.44
499 500 3.376935 CTACTCAGCCACAGCCCGG 62.377 68.421 0.00 0.00 41.25 5.73
539 540 4.942761 ATTTCTTCTGCTCAAAGGCAAA 57.057 36.364 0.00 0.00 41.94 3.68
611 612 1.964933 GATCGAACTAGAGGAAGGGGG 59.035 57.143 0.00 0.00 0.00 5.40
672 673 1.745864 GACGGCGAGAGAGTGGAGA 60.746 63.158 16.62 0.00 0.00 3.71
691 692 2.416244 TATTCGAGGCATCCGACGGC 62.416 60.000 9.66 0.00 35.61 5.68
692 693 0.031585 TTATTCGAGGCATCCGACGG 59.968 55.000 7.84 7.84 35.61 4.79
693 694 1.409412 CTTATTCGAGGCATCCGACG 58.591 55.000 0.00 0.00 35.61 5.12
694 695 1.140816 GCTTATTCGAGGCATCCGAC 58.859 55.000 0.00 0.00 35.61 4.79
695 696 0.750249 TGCTTATTCGAGGCATCCGA 59.250 50.000 0.00 0.00 0.00 4.55
696 697 1.143305 CTGCTTATTCGAGGCATCCG 58.857 55.000 0.00 0.00 35.37 4.18
697 698 0.871057 GCTGCTTATTCGAGGCATCC 59.129 55.000 0.00 0.00 35.37 3.51
698 699 1.797635 GAGCTGCTTATTCGAGGCATC 59.202 52.381 2.53 0.00 35.37 3.91
699 700 1.542108 GGAGCTGCTTATTCGAGGCAT 60.542 52.381 2.53 0.00 35.37 4.40
700 701 0.179073 GGAGCTGCTTATTCGAGGCA 60.179 55.000 2.53 4.84 34.66 4.75
701 702 0.882484 GGGAGCTGCTTATTCGAGGC 60.882 60.000 2.53 0.00 0.00 4.70
702 703 0.250081 GGGGAGCTGCTTATTCGAGG 60.250 60.000 2.53 0.00 0.00 4.63
703 704 0.250081 GGGGGAGCTGCTTATTCGAG 60.250 60.000 2.53 0.00 0.00 4.04
704 705 0.691078 AGGGGGAGCTGCTTATTCGA 60.691 55.000 2.53 0.00 0.00 3.71
705 706 0.181350 AAGGGGGAGCTGCTTATTCG 59.819 55.000 2.53 0.00 0.00 3.34
706 707 2.027385 CAAAGGGGGAGCTGCTTATTC 58.973 52.381 2.53 0.00 0.00 1.75
732 733 3.204827 CTTCGATTGGGGGCTGCG 61.205 66.667 0.00 0.00 0.00 5.18
737 738 2.045045 TGCTGCTTCGATTGGGGG 60.045 61.111 0.00 0.00 0.00 5.40
769 770 4.514577 CCGGTCGCAGCTCGGAAT 62.515 66.667 4.86 0.00 43.16 3.01
879 880 6.249035 TGTTTCTGATTGTAATCCGGAAAC 57.751 37.500 25.48 25.48 45.02 2.78
915 916 1.000145 GTTTCCGCCGAGACTGAATC 59.000 55.000 0.00 0.00 0.00 2.52
1185 1241 3.638160 ACGCAATCTTGATATTTGCCCAT 59.362 39.130 3.99 0.00 42.05 4.00
1190 1247 9.888878 AATAGAATGACGCAATCTTGATATTTG 57.111 29.630 3.36 0.00 0.00 2.32
1266 1337 7.715657 TGCACAATTTTGATTAGACAGTCTTT 58.284 30.769 8.80 0.00 0.00 2.52
1267 1338 7.013655 ACTGCACAATTTTGATTAGACAGTCTT 59.986 33.333 8.80 0.00 29.08 3.01
1268 1339 6.488006 ACTGCACAATTTTGATTAGACAGTCT 59.512 34.615 8.50 8.50 29.08 3.24
1269 1340 6.672147 ACTGCACAATTTTGATTAGACAGTC 58.328 36.000 0.00 0.00 29.08 3.51
1270 1341 6.262944 TGACTGCACAATTTTGATTAGACAGT 59.737 34.615 0.00 0.00 37.35 3.55
1271 1342 6.671190 TGACTGCACAATTTTGATTAGACAG 58.329 36.000 0.00 0.00 0.00 3.51
1272 1343 6.631971 TGACTGCACAATTTTGATTAGACA 57.368 33.333 0.00 0.00 0.00 3.41
1273 1344 7.928908 TTTGACTGCACAATTTTGATTAGAC 57.071 32.000 0.00 0.00 0.00 2.59
1274 1345 9.545105 AATTTTGACTGCACAATTTTGATTAGA 57.455 25.926 0.00 0.00 32.09 2.10
1275 1346 9.588774 CAATTTTGACTGCACAATTTTGATTAG 57.411 29.630 0.00 0.00 33.39 1.73
1276 1347 8.068977 GCAATTTTGACTGCACAATTTTGATTA 58.931 29.630 12.68 0.00 33.39 1.75
1277 1348 6.913673 GCAATTTTGACTGCACAATTTTGATT 59.086 30.769 12.68 0.53 33.39 2.57
1280 1351 4.667061 CGCAATTTTGACTGCACAATTTTG 59.333 37.500 0.00 0.00 38.52 2.44
1289 1360 1.266718 TGGAGACGCAATTTTGACTGC 59.733 47.619 0.00 0.00 35.14 4.40
1292 1363 3.236816 CACATGGAGACGCAATTTTGAC 58.763 45.455 0.00 0.00 0.00 3.18
1308 1422 6.345096 AGAATTTTTGTACTTCCCCACATG 57.655 37.500 0.00 0.00 0.00 3.21
1309 1423 9.936329 ATATAGAATTTTTGTACTTCCCCACAT 57.064 29.630 0.00 0.00 0.00 3.21
1346 1460 3.202151 ACAAACTTCCCCACAAGAAGAGA 59.798 43.478 7.47 0.00 42.80 3.10
1459 1577 3.641434 ATCAACCTCATTGTCCTCCTG 57.359 47.619 0.00 0.00 39.54 3.86
1590 1708 6.255887 CCACGATAACAACCTTTGAGAGTATC 59.744 42.308 0.00 0.00 0.00 2.24
1616 1734 1.475682 GCTTGGGCTCAAAAGATCCAG 59.524 52.381 0.00 0.00 31.78 3.86
1620 1738 2.811410 TCATGCTTGGGCTCAAAAGAT 58.189 42.857 0.00 0.00 39.59 2.40
1838 1959 4.032900 CCTTCGTCATGATTGTAAACTCGG 59.967 45.833 0.00 0.00 0.00 4.63
1839 1960 4.625742 ACCTTCGTCATGATTGTAAACTCG 59.374 41.667 0.00 0.00 0.00 4.18
1878 1999 4.696877 CCATAAGTGAGCAGTTCATCAACA 59.303 41.667 0.00 0.00 38.29 3.33
2304 2428 2.363359 CAAATGGAGGAAGCTTATGGCC 59.637 50.000 0.00 0.00 43.05 5.36
2369 2501 0.533032 TCCACAACACACGACACTCA 59.467 50.000 0.00 0.00 0.00 3.41
2436 2586 4.320608 TTCACCCAAATCTGCAAAAGAC 57.679 40.909 0.00 0.00 37.88 3.01
2776 3003 5.598830 TCCTTTGTCCTTCTTCTCGCTATAT 59.401 40.000 0.00 0.00 0.00 0.86
2852 3079 3.745797 GCCTGAAACCCATAGATCCTGAC 60.746 52.174 0.00 0.00 0.00 3.51
2909 3142 3.050275 GTTCACCGCTGCCTCCAC 61.050 66.667 0.00 0.00 0.00 4.02
3013 3246 8.033038 CCATTGTTGATTTTGTCTCTGATCAAT 58.967 33.333 0.00 0.00 39.74 2.57
3098 3334 6.994868 AATTCTAGACGCGAACAATATCTC 57.005 37.500 15.93 0.00 0.00 2.75
3107 3343 2.418692 TGCCAAAATTCTAGACGCGAA 58.581 42.857 15.93 0.00 0.00 4.70
3136 3372 4.371786 TCGCAAATAACAAACATTGGCAA 58.628 34.783 0.68 0.68 32.74 4.52
3156 3392 3.492421 ACAAGGTGCAAGCATTTATCG 57.508 42.857 0.00 0.00 36.26 2.92
3207 3443 2.186826 ACGCTTTGTCACCAGTGCC 61.187 57.895 0.00 0.00 0.00 5.01
3248 3484 5.904941 AGATGTTCATTGTTCAGTTTGCAA 58.095 33.333 0.00 0.00 0.00 4.08
3253 3489 7.099266 TGTCAAAGATGTTCATTGTTCAGTT 57.901 32.000 0.00 0.00 0.00 3.16
3295 3531 1.453148 GCAATGCAGCGAAAGTTCAAC 59.547 47.619 0.00 0.00 0.00 3.18
3368 3604 6.435904 TGGATACATAAAAAGGACAAACCCAG 59.564 38.462 0.00 0.00 46.17 4.45
3383 3619 7.692539 CTGGTTCCCAAGATCATGGATACATAA 60.693 40.741 18.56 5.05 45.36 1.90
3384 3620 6.239973 CTGGTTCCCAAGATCATGGATACATA 60.240 42.308 18.56 7.65 45.36 2.29
3386 3622 4.141413 CTGGTTCCCAAGATCATGGATACA 60.141 45.833 18.56 10.17 43.54 2.29
3387 3623 4.103153 TCTGGTTCCCAAGATCATGGATAC 59.897 45.833 18.56 14.07 43.54 2.24
3388 3624 4.306391 TCTGGTTCCCAAGATCATGGATA 58.694 43.478 18.56 3.34 43.54 2.59
3389 3625 3.125656 TCTGGTTCCCAAGATCATGGAT 58.874 45.455 18.56 0.00 43.54 3.41
3390 3626 2.561187 TCTGGTTCCCAAGATCATGGA 58.439 47.619 18.56 6.18 43.54 3.41
3391 3627 3.589951 ATCTGGTTCCCAAGATCATGG 57.410 47.619 10.12 10.12 40.35 3.66
3392 3628 3.067742 GCAATCTGGTTCCCAAGATCATG 59.932 47.826 0.00 0.00 30.80 3.07
3393 3629 3.053095 AGCAATCTGGTTCCCAAGATCAT 60.053 43.478 0.00 0.00 30.80 2.45
3394 3630 2.309755 AGCAATCTGGTTCCCAAGATCA 59.690 45.455 0.00 0.00 30.80 2.92
3395 3631 2.686915 CAGCAATCTGGTTCCCAAGATC 59.313 50.000 0.00 0.00 36.68 2.75
3396 3632 2.731572 CAGCAATCTGGTTCCCAAGAT 58.268 47.619 0.00 0.00 36.68 2.40
3397 3633 2.205022 CAGCAATCTGGTTCCCAAGA 57.795 50.000 0.00 0.00 36.68 3.02
3415 3651 4.648762 TCTTTTTGCAAGATCTGGTTTCCA 59.351 37.500 0.00 0.00 0.00 3.53
3416 3652 5.200368 TCTTTTTGCAAGATCTGGTTTCC 57.800 39.130 0.00 0.00 0.00 3.13
3417 3653 6.524586 CGTATCTTTTTGCAAGATCTGGTTTC 59.475 38.462 2.64 0.00 38.00 2.78
3418 3654 6.381801 CGTATCTTTTTGCAAGATCTGGTTT 58.618 36.000 2.64 0.00 38.00 3.27
3419 3655 5.106157 CCGTATCTTTTTGCAAGATCTGGTT 60.106 40.000 2.64 0.00 38.00 3.67
3420 3656 4.396166 CCGTATCTTTTTGCAAGATCTGGT 59.604 41.667 2.64 0.00 38.00 4.00
3421 3657 4.201950 CCCGTATCTTTTTGCAAGATCTGG 60.202 45.833 2.64 6.52 38.00 3.86
3422 3658 4.731773 GCCCGTATCTTTTTGCAAGATCTG 60.732 45.833 2.64 0.00 38.00 2.90
3423 3659 3.378427 GCCCGTATCTTTTTGCAAGATCT 59.622 43.478 2.64 0.00 38.00 2.75
3424 3660 3.128589 TGCCCGTATCTTTTTGCAAGATC 59.871 43.478 2.64 0.00 38.00 2.75
3425 3661 3.088532 TGCCCGTATCTTTTTGCAAGAT 58.911 40.909 0.00 1.56 39.97 2.40
3426 3662 2.227865 GTGCCCGTATCTTTTTGCAAGA 59.772 45.455 0.00 0.00 0.00 3.02
3427 3663 2.228822 AGTGCCCGTATCTTTTTGCAAG 59.771 45.455 0.00 0.00 0.00 4.01
3428 3664 2.235016 AGTGCCCGTATCTTTTTGCAA 58.765 42.857 0.00 0.00 0.00 4.08
3429 3665 1.904287 AGTGCCCGTATCTTTTTGCA 58.096 45.000 0.00 0.00 0.00 4.08
3430 3666 2.745281 TGTAGTGCCCGTATCTTTTTGC 59.255 45.455 0.00 0.00 0.00 3.68
3431 3667 5.560966 AATGTAGTGCCCGTATCTTTTTG 57.439 39.130 0.00 0.00 0.00 2.44
3432 3668 4.331717 CGAATGTAGTGCCCGTATCTTTTT 59.668 41.667 0.00 0.00 0.00 1.94
3433 3669 3.869246 CGAATGTAGTGCCCGTATCTTTT 59.131 43.478 0.00 0.00 0.00 2.27
3434 3670 3.131577 TCGAATGTAGTGCCCGTATCTTT 59.868 43.478 0.00 0.00 0.00 2.52
3435 3671 2.691526 TCGAATGTAGTGCCCGTATCTT 59.308 45.455 0.00 0.00 0.00 2.40
3436 3672 2.304092 TCGAATGTAGTGCCCGTATCT 58.696 47.619 0.00 0.00 0.00 1.98
3437 3673 2.787601 TCGAATGTAGTGCCCGTATC 57.212 50.000 0.00 0.00 0.00 2.24
3438 3674 2.482490 GGTTCGAATGTAGTGCCCGTAT 60.482 50.000 0.00 0.00 0.00 3.06
3439 3675 1.135024 GGTTCGAATGTAGTGCCCGTA 60.135 52.381 0.00 0.00 0.00 4.02
3440 3676 0.390735 GGTTCGAATGTAGTGCCCGT 60.391 55.000 0.00 0.00 0.00 5.28
3441 3677 0.390603 TGGTTCGAATGTAGTGCCCG 60.391 55.000 0.00 0.00 0.00 6.13
3442 3678 2.038387 ATGGTTCGAATGTAGTGCCC 57.962 50.000 0.00 0.00 0.00 5.36
3443 3679 3.802685 GTCTATGGTTCGAATGTAGTGCC 59.197 47.826 0.00 0.00 0.00 5.01
3444 3680 3.802685 GGTCTATGGTTCGAATGTAGTGC 59.197 47.826 0.00 3.12 0.00 4.40
3445 3681 4.042398 CGGTCTATGGTTCGAATGTAGTG 58.958 47.826 0.00 0.00 0.00 2.74
3446 3682 3.698040 ACGGTCTATGGTTCGAATGTAGT 59.302 43.478 0.00 0.00 0.00 2.73
3447 3683 4.201980 TGACGGTCTATGGTTCGAATGTAG 60.202 45.833 9.88 4.73 0.00 2.74
3448 3684 3.695556 TGACGGTCTATGGTTCGAATGTA 59.304 43.478 9.88 0.00 0.00 2.29
3449 3685 2.494471 TGACGGTCTATGGTTCGAATGT 59.506 45.455 9.88 0.00 0.00 2.71
3450 3686 3.159353 TGACGGTCTATGGTTCGAATG 57.841 47.619 9.88 0.00 0.00 2.67
3451 3687 3.194968 ACTTGACGGTCTATGGTTCGAAT 59.805 43.478 9.88 0.00 0.00 3.34
3452 3688 2.559668 ACTTGACGGTCTATGGTTCGAA 59.440 45.455 9.88 0.00 0.00 3.71
3453 3689 2.163010 GACTTGACGGTCTATGGTTCGA 59.837 50.000 9.88 0.00 33.81 3.71
3454 3690 2.094906 TGACTTGACGGTCTATGGTTCG 60.095 50.000 9.88 0.00 37.16 3.95
3455 3691 3.587797 TGACTTGACGGTCTATGGTTC 57.412 47.619 9.88 0.00 37.16 3.62
3456 3692 4.099573 CCTATGACTTGACGGTCTATGGTT 59.900 45.833 9.88 0.00 37.16 3.67
3457 3693 3.637229 CCTATGACTTGACGGTCTATGGT 59.363 47.826 9.88 3.05 37.16 3.55
3458 3694 3.005897 CCCTATGACTTGACGGTCTATGG 59.994 52.174 9.88 0.00 37.16 2.74
3459 3695 3.005897 CCCCTATGACTTGACGGTCTATG 59.994 52.174 9.88 2.30 37.16 2.23
3460 3696 3.117246 TCCCCTATGACTTGACGGTCTAT 60.117 47.826 9.88 0.00 37.16 1.98
3461 3697 2.242965 TCCCCTATGACTTGACGGTCTA 59.757 50.000 9.88 0.43 37.16 2.59
3462 3698 1.006758 TCCCCTATGACTTGACGGTCT 59.993 52.381 9.88 0.00 37.16 3.85
3463 3699 1.481871 TCCCCTATGACTTGACGGTC 58.518 55.000 0.00 0.00 36.81 4.79
3464 3700 1.946984 TTCCCCTATGACTTGACGGT 58.053 50.000 0.00 0.00 0.00 4.83
3465 3701 3.343941 TTTTCCCCTATGACTTGACGG 57.656 47.619 0.00 0.00 0.00 4.79
3466 3702 4.513442 TCATTTTCCCCTATGACTTGACG 58.487 43.478 0.00 0.00 0.00 4.35
3467 3703 5.946377 AGTTCATTTTCCCCTATGACTTGAC 59.054 40.000 0.00 0.00 30.89 3.18
3468 3704 6.139679 AGTTCATTTTCCCCTATGACTTGA 57.860 37.500 0.00 0.00 30.89 3.02
3469 3705 8.525290 AATAGTTCATTTTCCCCTATGACTTG 57.475 34.615 0.00 0.00 30.89 3.16
3470 3706 9.853177 CTAATAGTTCATTTTCCCCTATGACTT 57.147 33.333 0.00 0.00 30.89 3.01
3471 3707 9.225682 TCTAATAGTTCATTTTCCCCTATGACT 57.774 33.333 0.00 0.00 30.89 3.41
3472 3708 9.847224 TTCTAATAGTTCATTTTCCCCTATGAC 57.153 33.333 0.00 0.00 30.89 3.06
3508 3744 4.946478 TGAGGGAGATTAAAGCTCTAGC 57.054 45.455 8.16 0.00 42.49 3.42
3509 3745 6.097554 TGTCTTGAGGGAGATTAAAGCTCTAG 59.902 42.308 8.16 0.00 32.98 2.43
3510 3746 5.958380 TGTCTTGAGGGAGATTAAAGCTCTA 59.042 40.000 8.16 0.00 32.98 2.43
3511 3747 4.780021 TGTCTTGAGGGAGATTAAAGCTCT 59.220 41.667 8.16 0.00 32.98 4.09
3512 3748 5.091261 TGTCTTGAGGGAGATTAAAGCTC 57.909 43.478 0.00 1.21 0.00 4.09
3513 3749 5.221925 TGTTGTCTTGAGGGAGATTAAAGCT 60.222 40.000 0.00 0.00 0.00 3.74
3514 3750 5.003804 TGTTGTCTTGAGGGAGATTAAAGC 58.996 41.667 0.00 0.00 0.00 3.51
3515 3751 5.412904 GGTGTTGTCTTGAGGGAGATTAAAG 59.587 44.000 0.00 0.00 0.00 1.85
3516 3752 5.163141 TGGTGTTGTCTTGAGGGAGATTAAA 60.163 40.000 0.00 0.00 0.00 1.52
3517 3753 4.349636 TGGTGTTGTCTTGAGGGAGATTAA 59.650 41.667 0.00 0.00 0.00 1.40
3518 3754 3.907474 TGGTGTTGTCTTGAGGGAGATTA 59.093 43.478 0.00 0.00 0.00 1.75
3519 3755 2.711009 TGGTGTTGTCTTGAGGGAGATT 59.289 45.455 0.00 0.00 0.00 2.40
3520 3756 2.338809 TGGTGTTGTCTTGAGGGAGAT 58.661 47.619 0.00 0.00 0.00 2.75
3521 3757 1.801242 TGGTGTTGTCTTGAGGGAGA 58.199 50.000 0.00 0.00 0.00 3.71
3522 3758 2.304180 AGATGGTGTTGTCTTGAGGGAG 59.696 50.000 0.00 0.00 0.00 4.30
3523 3759 2.338809 AGATGGTGTTGTCTTGAGGGA 58.661 47.619 0.00 0.00 0.00 4.20
3524 3760 2.867109 AGATGGTGTTGTCTTGAGGG 57.133 50.000 0.00 0.00 0.00 4.30
3525 3761 4.271696 TGTAGATGGTGTTGTCTTGAGG 57.728 45.455 0.00 0.00 0.00 3.86
3526 3762 7.984050 AGATTATGTAGATGGTGTTGTCTTGAG 59.016 37.037 0.00 0.00 0.00 3.02
3527 3763 7.851228 AGATTATGTAGATGGTGTTGTCTTGA 58.149 34.615 0.00 0.00 0.00 3.02
3528 3764 9.770097 ATAGATTATGTAGATGGTGTTGTCTTG 57.230 33.333 0.00 0.00 0.00 3.02
3544 3780 8.467598 GGTGTGTCGGACATATATAGATTATGT 58.532 37.037 14.78 0.00 36.78 2.29
3545 3781 7.644157 CGGTGTGTCGGACATATATAGATTATG 59.356 40.741 14.78 0.00 36.78 1.90
3546 3782 7.555195 TCGGTGTGTCGGACATATATAGATTAT 59.445 37.037 14.78 0.00 36.78 1.28
3547 3783 6.880529 TCGGTGTGTCGGACATATATAGATTA 59.119 38.462 14.78 0.00 36.78 1.75
3548 3784 5.708697 TCGGTGTGTCGGACATATATAGATT 59.291 40.000 14.78 0.00 36.78 2.40
3549 3785 5.250982 TCGGTGTGTCGGACATATATAGAT 58.749 41.667 14.78 0.00 36.78 1.98
3550 3786 4.644498 TCGGTGTGTCGGACATATATAGA 58.356 43.478 14.78 6.95 36.78 1.98
3551 3787 5.366829 TTCGGTGTGTCGGACATATATAG 57.633 43.478 14.78 4.78 36.78 1.31
3552 3788 4.320714 GCTTCGGTGTGTCGGACATATATA 60.321 45.833 14.78 0.00 36.78 0.86
3553 3789 3.552273 GCTTCGGTGTGTCGGACATATAT 60.552 47.826 14.78 0.00 36.78 0.86
3554 3790 2.223641 GCTTCGGTGTGTCGGACATATA 60.224 50.000 14.78 1.47 36.78 0.86
3555 3791 1.470979 GCTTCGGTGTGTCGGACATAT 60.471 52.381 14.78 0.00 36.78 1.78
3556 3792 0.108992 GCTTCGGTGTGTCGGACATA 60.109 55.000 14.78 8.98 36.78 2.29
3557 3793 1.374252 GCTTCGGTGTGTCGGACAT 60.374 57.895 14.78 0.00 36.78 3.06
3558 3794 2.028484 GCTTCGGTGTGTCGGACA 59.972 61.111 6.76 6.76 0.00 4.02
3559 3795 2.022129 CAGCTTCGGTGTGTCGGAC 61.022 63.158 0.00 0.00 0.00 4.79
3560 3796 1.740332 TTCAGCTTCGGTGTGTCGGA 61.740 55.000 0.00 0.00 32.43 4.55
3561 3797 1.300620 TTCAGCTTCGGTGTGTCGG 60.301 57.895 0.00 0.00 32.43 4.79
3562 3798 0.597637 AGTTCAGCTTCGGTGTGTCG 60.598 55.000 0.00 0.00 32.43 4.35
3563 3799 1.583054 AAGTTCAGCTTCGGTGTGTC 58.417 50.000 0.00 0.00 30.06 3.67
3564 3800 2.038387 AAAGTTCAGCTTCGGTGTGT 57.962 45.000 0.00 0.00 36.17 3.72
3565 3801 3.108144 CAAAAAGTTCAGCTTCGGTGTG 58.892 45.455 0.00 0.00 36.17 3.82
3566 3802 2.099098 CCAAAAAGTTCAGCTTCGGTGT 59.901 45.455 0.00 0.00 36.17 4.16
3567 3803 2.731217 CCAAAAAGTTCAGCTTCGGTG 58.269 47.619 0.00 0.00 36.17 4.94
3568 3804 1.067060 GCCAAAAAGTTCAGCTTCGGT 59.933 47.619 0.00 0.00 36.17 4.69
3569 3805 1.338020 AGCCAAAAAGTTCAGCTTCGG 59.662 47.619 0.00 0.00 36.17 4.30
3570 3806 2.781945 AGCCAAAAAGTTCAGCTTCG 57.218 45.000 0.00 0.00 36.17 3.79
3571 3807 4.686972 AGAAAGCCAAAAAGTTCAGCTTC 58.313 39.130 0.00 0.00 42.69 3.86
3572 3808 4.743057 AGAAAGCCAAAAAGTTCAGCTT 57.257 36.364 0.00 0.00 45.28 3.74
3587 3823 4.074970 TCACTTCCAGGAATCAAGAAAGC 58.925 43.478 1.09 0.00 0.00 3.51
3593 3829 2.358957 CGCATCACTTCCAGGAATCAA 58.641 47.619 1.09 0.00 0.00 2.57
3606 3842 0.039256 ATGTTGCAACACCGCATCAC 60.039 50.000 33.29 2.32 42.63 3.06
3658 3894 2.096069 GTCCACAATATATGCAGCAGCG 60.096 50.000 0.00 0.00 46.23 5.18
3687 3926 4.219288 AGATGCATTCTCAACCTTTCCAAC 59.781 41.667 0.00 0.00 0.00 3.77
3715 3954 5.455392 CAACAAGGAATGAACTCATCACAC 58.545 41.667 0.00 0.00 41.93 3.82
3726 3965 5.652014 GGTCAATCATACCAACAAGGAATGA 59.348 40.000 0.00 0.00 41.22 2.57
3761 4000 1.538512 TCCTCCTAACACGTCTGTTCG 59.461 52.381 0.00 0.00 41.15 3.95
3798 4038 3.813724 CATCCCTCCCCAGGCACC 61.814 72.222 0.00 0.00 38.72 5.01
3799 4039 4.512914 GCATCCCTCCCCAGGCAC 62.513 72.222 0.00 0.00 38.72 5.01
3808 4048 2.305009 CAATTCCTTCCAGCATCCCTC 58.695 52.381 0.00 0.00 0.00 4.30
3820 4060 0.400213 TCAGCGGACACCAATTCCTT 59.600 50.000 0.00 0.00 0.00 3.36
3822 4065 1.243902 TTTCAGCGGACACCAATTCC 58.756 50.000 0.00 0.00 0.00 3.01
3824 4067 2.890311 TCATTTTCAGCGGACACCAATT 59.110 40.909 0.00 0.00 0.00 2.32
3832 4075 0.323269 TGGGCATCATTTTCAGCGGA 60.323 50.000 0.00 0.00 0.00 5.54
3857 4100 3.749226 TCAGCATACACCACAACATCAA 58.251 40.909 0.00 0.00 0.00 2.57
3886 4129 1.304713 CCAGCCATGGTTGCTCCTT 60.305 57.895 22.33 0.00 42.17 3.36
3916 4159 5.699458 CCTCCGTAGTGTAAATTTCAGTTGT 59.301 40.000 0.00 0.00 0.00 3.32
3921 4164 4.040706 ACACCCTCCGTAGTGTAAATTTCA 59.959 41.667 0.00 0.00 45.14 2.69
3928 4171 0.405198 TCCACACCCTCCGTAGTGTA 59.595 55.000 0.00 0.00 45.20 2.90
3931 4174 0.178941 AGTTCCACACCCTCCGTAGT 60.179 55.000 0.00 0.00 0.00 2.73
3934 4177 3.148084 CAGTTCCACACCCTCCGT 58.852 61.111 0.00 0.00 0.00 4.69
3974 4217 2.115427 TCCTGACAGTCTCACCAACAA 58.885 47.619 1.31 0.00 0.00 2.83
3994 4755 2.683152 GCTCATCCTCAATTCCTGCTGT 60.683 50.000 0.00 0.00 0.00 4.40
3996 4757 1.562942 TGCTCATCCTCAATTCCTGCT 59.437 47.619 0.00 0.00 0.00 4.24
4010 4771 2.174210 ACAACCTGCTCCATATGCTCAT 59.826 45.455 0.00 0.00 0.00 2.90
4033 4794 3.869912 GCAGAATGTTGCTCAGGTTCCTA 60.870 47.826 0.00 0.00 40.89 2.94
4040 4801 1.531264 GCATCGCAGAATGTTGCTCAG 60.531 52.381 0.88 0.00 43.58 3.35
4092 5074 1.302832 GCTACCTGCAACCACAGCT 60.303 57.895 0.00 0.00 42.31 4.24
4165 5147 1.961277 CAACGACCCTGGCAGTCAC 60.961 63.158 14.43 3.03 33.70 3.67
4166 5148 2.425592 CAACGACCCTGGCAGTCA 59.574 61.111 14.43 0.00 33.70 3.41
4167 5149 3.050275 GCAACGACCCTGGCAGTC 61.050 66.667 14.43 5.24 0.00 3.51
4168 5150 3.832237 CTGCAACGACCCTGGCAGT 62.832 63.158 14.43 0.00 46.47 4.40
4169 5151 3.052082 CTGCAACGACCCTGGCAG 61.052 66.667 7.75 7.75 46.47 4.85
4172 5154 2.809861 ATCAGCTGCAACGACCCTGG 62.810 60.000 9.47 0.00 0.00 4.45
4173 5155 1.376424 ATCAGCTGCAACGACCCTG 60.376 57.895 9.47 0.00 0.00 4.45
4174 5156 1.376424 CATCAGCTGCAACGACCCT 60.376 57.895 9.47 0.00 0.00 4.34
4175 5157 1.375908 TCATCAGCTGCAACGACCC 60.376 57.895 9.47 0.00 0.00 4.46
4176 5158 0.671781 AGTCATCAGCTGCAACGACC 60.672 55.000 9.47 0.00 0.00 4.79
4177 5159 0.441533 CAGTCATCAGCTGCAACGAC 59.558 55.000 9.47 12.07 0.00 4.34
4178 5160 2.831597 CAGTCATCAGCTGCAACGA 58.168 52.632 9.47 0.00 0.00 3.85
4184 5166 2.536725 AACACGCAGTCATCAGCTG 58.463 52.632 7.63 7.63 41.61 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.