Multiple sequence alignment - TraesCS6B01G451500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G451500 chr6B 100.000 4044 0 0 1 4044 710152742 710148699 0.000000e+00 7468.0
1 TraesCS6B01G451500 chr6B 93.021 2092 103 24 1071 3160 710228524 710230574 0.000000e+00 3014.0
2 TraesCS6B01G451500 chr6B 83.302 533 43 30 526 1027 711709278 711709795 2.220000e-122 449.0
3 TraesCS6B01G451500 chr6B 81.670 551 71 20 491 1027 711869514 711870048 8.030000e-117 431.0
4 TraesCS6B01G451500 chr6B 92.222 270 16 5 3517 3782 149616238 149616506 1.060000e-100 377.0
5 TraesCS6B01G451500 chr6B 93.237 207 11 2 3839 4042 149616696 149616902 6.570000e-78 302.0
6 TraesCS6B01G451500 chr6B 85.366 287 30 8 691 971 711876899 711877179 1.840000e-73 287.0
7 TraesCS6B01G451500 chr6B 71.452 1212 287 46 1218 2402 710318849 710317670 2.400000e-67 267.0
8 TraesCS6B01G451500 chr6B 81.724 290 29 18 540 817 711238019 711237742 1.890000e-53 220.0
9 TraesCS6B01G451500 chr6B 83.796 216 15 8 694 891 710319567 710319354 1.920000e-43 187.0
10 TraesCS6B01G451500 chr6B 78.214 280 36 18 652 911 710228162 710228436 5.410000e-34 156.0
11 TraesCS6B01G451500 chr1A 99.432 528 3 0 3517 4044 54007907 54008434 0.000000e+00 959.0
12 TraesCS6B01G451500 chr1A 98.106 528 10 0 3517 4044 109428175 109428702 0.000000e+00 920.0
13 TraesCS6B01G451500 chr1A 99.427 349 2 0 3160 3508 54005409 54005757 5.700000e-178 634.0
14 TraesCS6B01G451500 chr1A 97.527 283 5 2 3237 3519 109423383 109423663 2.190000e-132 483.0
15 TraesCS6B01G451500 chr1A 86.538 52 3 3 3457 3505 297259582 297259532 2.000000e-03 54.7
16 TraesCS6B01G451500 chr4A 97.727 528 12 0 3517 4044 76383767 76384294 0.000000e+00 909.0
17 TraesCS6B01G451500 chr4A 96.275 349 9 3 3160 3508 702427477 702427821 1.630000e-158 569.0
18 TraesCS6B01G451500 chr4A 98.168 273 4 1 3237 3508 76379036 76379308 3.660000e-130 475.0
19 TraesCS6B01G451500 chr4A 91.071 280 19 4 3517 3791 207974658 207974380 1.370000e-99 374.0
20 TraesCS6B01G451500 chr4A 87.640 178 18 1 766 939 594050101 594049924 1.910000e-48 204.0
21 TraesCS6B01G451500 chr4A 96.512 86 2 1 3368 3453 702427595 702427679 1.520000e-29 141.0
22 TraesCS6B01G451500 chr7A 94.769 325 14 3 3517 3839 9389691 9390014 1.680000e-138 503.0
23 TraesCS6B01G451500 chr7A 93.220 118 8 0 3160 3277 682174202 682174085 1.490000e-39 174.0
24 TraesCS6B01G451500 chr7B 92.923 325 19 4 3517 3839 607309849 607310171 1.700000e-128 470.0
25 TraesCS6B01G451500 chr7B 91.589 214 15 2 3834 4044 607310600 607310813 3.950000e-75 292.0
26 TraesCS6B01G451500 chr6A 99.606 254 1 0 3791 4044 514352436 514352689 7.920000e-127 464.0
27 TraesCS6B01G451500 chr6A 85.302 381 29 13 527 888 612299273 612299645 6.390000e-98 368.0
28 TraesCS6B01G451500 chr6A 80.042 471 53 14 559 1027 613093907 613094338 1.090000e-80 311.0
29 TraesCS6B01G451500 chr6A 83.573 347 25 14 760 1099 612109817 612109496 3.060000e-76 296.0
30 TraesCS6B01G451500 chr6A 86.957 253 23 7 527 776 612578618 612578373 3.980000e-70 276.0
31 TraesCS6B01G451500 chr6A 87.838 222 23 3 766 984 613079020 613079240 1.440000e-64 257.0
32 TraesCS6B01G451500 chr6A 83.883 273 23 8 559 816 612588553 612588819 1.450000e-59 241.0
33 TraesCS6B01G451500 chr6A 89.697 165 17 0 766 930 125259453 125259617 1.140000e-50 211.0
34 TraesCS6B01G451500 chr6A 97.222 36 1 0 3453 3488 145652046 145652081 1.210000e-05 62.1
35 TraesCS6B01G451500 chr6A 89.796 49 2 3 3441 3488 615746574 615746620 4.360000e-05 60.2
36 TraesCS6B01G451500 chr3B 94.898 294 12 2 3160 3453 605643199 605643489 1.320000e-124 457.0
37 TraesCS6B01G451500 chr3B 96.137 233 8 1 3276 3508 605643577 605643808 2.950000e-101 379.0
38 TraesCS6B01G451500 chr3B 94.146 205 9 2 3160 3364 255705375 255705174 3.930000e-80 309.0
39 TraesCS6B01G451500 chr3B 96.629 178 5 1 3276 3453 605643489 605643665 1.100000e-75 294.0
40 TraesCS6B01G451500 chr3B 94.944 178 8 1 3276 3453 605643401 605643577 1.110000e-70 278.0
41 TraesCS6B01G451500 chr6D 80.241 582 60 20 543 1099 462838860 462839411 1.760000e-103 387.0
42 TraesCS6B01G451500 chr6D 71.157 1210 291 46 1219 2402 465347747 465346570 8.680000e-62 248.0
43 TraesCS6B01G451500 chr6D 84.091 132 21 0 766 897 466328598 466328729 1.180000e-25 128.0
44 TraesCS6B01G451500 chr6D 83.333 138 23 0 2236 2373 466525002 466525139 1.180000e-25 128.0
45 TraesCS6B01G451500 chrUn 91.852 270 17 5 3517 3782 49429579 49429847 4.940000e-99 372.0
46 TraesCS6B01G451500 chrUn 93.204 206 12 2 3839 4042 49430038 49430243 6.570000e-78 302.0
47 TraesCS6B01G451500 chr4B 91.791 268 17 5 3517 3780 70051948 70052214 6.390000e-98 368.0
48 TraesCS6B01G451500 chr4B 92.271 207 13 2 3839 4042 70052406 70052612 1.420000e-74 291.0
49 TraesCS6B01G451500 chr4B 78.467 274 41 13 829 1098 17488457 17488716 3.230000e-36 163.0
50 TraesCS6B01G451500 chr4B 95.833 96 4 0 3182 3277 55705853 55705948 5.410000e-34 156.0
51 TraesCS6B01G451500 chr1B 94.203 207 9 2 3839 4042 613030913 613030707 3.030000e-81 313.0
52 TraesCS6B01G451500 chr1B 83.162 291 32 14 468 746 92327517 92327232 2.410000e-62 250.0
53 TraesCS6B01G451500 chr1B 87.425 167 14 5 934 1099 84113494 84113654 6.900000e-43 185.0
54 TraesCS6B01G451500 chr1B 95.000 40 2 0 766 805 92327191 92327152 3.370000e-06 63.9
55 TraesCS6B01G451500 chr2B 95.082 122 6 0 3156 3277 612673368 612673247 4.120000e-45 193.0
56 TraesCS6B01G451500 chr2B 100.000 30 0 0 3162 3191 735806984 735806955 5.650000e-04 56.5
57 TraesCS6B01G451500 chr5A 94.828 116 6 0 3160 3275 637708665 637708780 8.930000e-42 182.0
58 TraesCS6B01G451500 chr5A 94.118 119 7 0 3159 3277 663341495 663341613 8.930000e-42 182.0
59 TraesCS6B01G451500 chr5B 97.143 35 1 0 3454 3488 558333831 558333797 4.360000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G451500 chr6B 710148699 710152742 4043 True 7468.0 7468 100.0000 1 4044 1 chr6B.!!$R1 4043
1 TraesCS6B01G451500 chr6B 710228162 710230574 2412 False 1585.0 3014 85.6175 652 3160 2 chr6B.!!$F5 2508
2 TraesCS6B01G451500 chr6B 711709278 711709795 517 False 449.0 449 83.3020 526 1027 1 chr6B.!!$F1 501
3 TraesCS6B01G451500 chr6B 711869514 711870048 534 False 431.0 431 81.6700 491 1027 1 chr6B.!!$F2 536
4 TraesCS6B01G451500 chr6B 149616238 149616902 664 False 339.5 377 92.7295 3517 4042 2 chr6B.!!$F4 525
5 TraesCS6B01G451500 chr6B 710317670 710319567 1897 True 227.0 267 77.6240 694 2402 2 chr6B.!!$R3 1708
6 TraesCS6B01G451500 chr1A 109428175 109428702 527 False 920.0 920 98.1060 3517 4044 1 chr1A.!!$F2 527
7 TraesCS6B01G451500 chr1A 54005409 54008434 3025 False 796.5 959 99.4295 3160 4044 2 chr1A.!!$F3 884
8 TraesCS6B01G451500 chr4A 76383767 76384294 527 False 909.0 909 97.7270 3517 4044 1 chr4A.!!$F2 527
9 TraesCS6B01G451500 chr7B 607309849 607310813 964 False 381.0 470 92.2560 3517 4044 2 chr7B.!!$F1 527
10 TraesCS6B01G451500 chr3B 605643199 605643808 609 False 352.0 457 95.6520 3160 3508 4 chr3B.!!$F1 348
11 TraesCS6B01G451500 chr6D 462838860 462839411 551 False 387.0 387 80.2410 543 1099 1 chr6D.!!$F1 556
12 TraesCS6B01G451500 chr6D 465346570 465347747 1177 True 248.0 248 71.1570 1219 2402 1 chr6D.!!$R1 1183
13 TraesCS6B01G451500 chrUn 49429579 49430243 664 False 337.0 372 92.5280 3517 4042 2 chrUn.!!$F1 525
14 TraesCS6B01G451500 chr4B 70051948 70052612 664 False 329.5 368 92.0310 3517 4042 2 chr4B.!!$F3 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 311 0.032813 AATTGATGAGGGTGGGGCTG 60.033 55.0 0.00 0.00 0.00 4.85 F
951 1001 0.032912 TATATATCTGGCCGGGCGGA 60.033 55.0 38.34 38.34 37.50 5.54 F
1461 1788 0.110373 CGTGACGAGTGACGATGTCA 60.110 55.0 9.49 4.02 42.67 3.58 F
1524 1851 0.113580 GGAAAACAGGCCCCCAAGTA 59.886 55.0 0.00 0.00 0.00 2.24 F
2571 2900 0.323725 ATGGAATGCAGGTGTGGGAC 60.324 55.0 0.00 0.00 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1268 1595 0.179215 GCAACTTGCTCAACCGATCG 60.179 55.000 8.51 8.51 40.96 3.69 R
2589 2918 0.256464 TCCTCTCTTCCTCGTCTCCC 59.744 60.000 0.00 0.00 0.00 4.30 R
2647 2976 1.484444 GCCAGTCCTTCCCACTCTGT 61.484 60.000 0.00 0.00 0.00 3.41 R
2957 3286 1.659211 CGCGTACCAACAACAAGCTTC 60.659 52.381 0.00 0.00 0.00 3.86 R
3508 4099 5.966636 TGTGCAAGCTAATAACAGTATCG 57.033 39.130 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.944049 CATGTTTATCATGTGCTCTTTGC 57.056 39.130 0.00 0.00 46.18 3.68
40 41 5.647589 CATGTTTATCATGTGCTCTTTGCT 58.352 37.500 0.00 0.00 46.18 3.91
41 42 5.710513 TGTTTATCATGTGCTCTTTGCTT 57.289 34.783 0.00 0.00 43.37 3.91
42 43 5.463286 TGTTTATCATGTGCTCTTTGCTTG 58.537 37.500 0.00 0.00 43.37 4.01
43 44 2.649331 ATCATGTGCTCTTTGCTTGC 57.351 45.000 0.00 0.00 43.37 4.01
44 45 1.612676 TCATGTGCTCTTTGCTTGCT 58.387 45.000 0.00 0.00 43.37 3.91
45 46 2.781923 TCATGTGCTCTTTGCTTGCTA 58.218 42.857 0.00 0.00 43.37 3.49
46 47 3.148412 TCATGTGCTCTTTGCTTGCTAA 58.852 40.909 0.00 0.00 43.37 3.09
47 48 3.058016 TCATGTGCTCTTTGCTTGCTAAC 60.058 43.478 0.00 0.00 43.37 2.34
48 49 2.575532 TGTGCTCTTTGCTTGCTAACT 58.424 42.857 0.00 0.00 43.37 2.24
49 50 2.951642 TGTGCTCTTTGCTTGCTAACTT 59.048 40.909 0.00 0.00 43.37 2.66
50 51 3.243168 TGTGCTCTTTGCTTGCTAACTTG 60.243 43.478 0.00 0.00 43.37 3.16
51 52 2.951642 TGCTCTTTGCTTGCTAACTTGT 59.048 40.909 0.00 0.00 43.37 3.16
52 53 4.024048 GTGCTCTTTGCTTGCTAACTTGTA 60.024 41.667 0.00 0.00 43.37 2.41
53 54 4.024048 TGCTCTTTGCTTGCTAACTTGTAC 60.024 41.667 0.00 0.00 43.37 2.90
54 55 4.024048 GCTCTTTGCTTGCTAACTTGTACA 60.024 41.667 0.00 0.00 38.95 2.90
55 56 5.335191 GCTCTTTGCTTGCTAACTTGTACAT 60.335 40.000 0.00 0.00 38.95 2.29
56 57 6.000891 TCTTTGCTTGCTAACTTGTACATG 57.999 37.500 7.18 7.18 0.00 3.21
57 58 5.530915 TCTTTGCTTGCTAACTTGTACATGT 59.469 36.000 8.51 8.51 0.00 3.21
58 59 5.766150 TTGCTTGCTAACTTGTACATGTT 57.234 34.783 25.07 25.07 33.90 2.71
59 60 5.766150 TGCTTGCTAACTTGTACATGTTT 57.234 34.783 26.38 14.09 32.10 2.83
60 61 6.869315 TGCTTGCTAACTTGTACATGTTTA 57.131 33.333 26.38 14.08 32.10 2.01
61 62 7.447374 TGCTTGCTAACTTGTACATGTTTAT 57.553 32.000 26.38 10.25 32.10 1.40
62 63 7.304735 TGCTTGCTAACTTGTACATGTTTATG 58.695 34.615 26.38 18.69 40.24 1.90
63 64 6.251376 GCTTGCTAACTTGTACATGTTTATGC 59.749 38.462 26.38 24.78 37.85 3.14
64 65 6.189677 TGCTAACTTGTACATGTTTATGCC 57.810 37.500 26.38 13.86 37.85 4.40
65 66 5.163804 TGCTAACTTGTACATGTTTATGCCG 60.164 40.000 26.38 12.71 37.85 5.69
66 67 5.064198 GCTAACTTGTACATGTTTATGCCGA 59.936 40.000 26.38 10.43 37.85 5.54
67 68 5.545658 AACTTGTACATGTTTATGCCGAG 57.454 39.130 18.60 1.82 37.85 4.63
68 69 4.827692 ACTTGTACATGTTTATGCCGAGA 58.172 39.130 2.30 0.00 37.85 4.04
69 70 5.428253 ACTTGTACATGTTTATGCCGAGAT 58.572 37.500 2.30 0.00 37.85 2.75
70 71 6.578944 ACTTGTACATGTTTATGCCGAGATA 58.421 36.000 2.30 0.00 37.85 1.98
71 72 6.479001 ACTTGTACATGTTTATGCCGAGATAC 59.521 38.462 2.30 0.00 37.85 2.24
72 73 6.156748 TGTACATGTTTATGCCGAGATACT 57.843 37.500 2.30 0.00 37.85 2.12
73 74 6.578944 TGTACATGTTTATGCCGAGATACTT 58.421 36.000 2.30 0.00 37.85 2.24
74 75 7.045416 TGTACATGTTTATGCCGAGATACTTT 58.955 34.615 2.30 0.00 37.85 2.66
75 76 7.551262 TGTACATGTTTATGCCGAGATACTTTT 59.449 33.333 2.30 0.00 37.85 2.27
76 77 7.016361 ACATGTTTATGCCGAGATACTTTTC 57.984 36.000 0.00 0.00 37.85 2.29
77 78 6.823689 ACATGTTTATGCCGAGATACTTTTCT 59.176 34.615 0.00 0.00 37.85 2.52
78 79 7.336931 ACATGTTTATGCCGAGATACTTTTCTT 59.663 33.333 0.00 0.00 37.85 2.52
79 80 7.681939 TGTTTATGCCGAGATACTTTTCTTT 57.318 32.000 0.00 0.00 0.00 2.52
80 81 8.106247 TGTTTATGCCGAGATACTTTTCTTTT 57.894 30.769 0.00 0.00 0.00 2.27
81 82 9.221933 TGTTTATGCCGAGATACTTTTCTTTTA 57.778 29.630 0.00 0.00 0.00 1.52
82 83 9.486857 GTTTATGCCGAGATACTTTTCTTTTAC 57.513 33.333 0.00 0.00 0.00 2.01
83 84 6.679327 ATGCCGAGATACTTTTCTTTTACC 57.321 37.500 0.00 0.00 0.00 2.85
84 85 5.553123 TGCCGAGATACTTTTCTTTTACCA 58.447 37.500 0.00 0.00 0.00 3.25
85 86 6.177610 TGCCGAGATACTTTTCTTTTACCAT 58.822 36.000 0.00 0.00 0.00 3.55
86 87 6.657541 TGCCGAGATACTTTTCTTTTACCATT 59.342 34.615 0.00 0.00 0.00 3.16
87 88 7.175990 TGCCGAGATACTTTTCTTTTACCATTT 59.824 33.333 0.00 0.00 0.00 2.32
88 89 7.696872 GCCGAGATACTTTTCTTTTACCATTTC 59.303 37.037 0.00 0.00 0.00 2.17
89 90 8.726988 CCGAGATACTTTTCTTTTACCATTTCA 58.273 33.333 0.00 0.00 0.00 2.69
95 96 8.574196 ACTTTTCTTTTACCATTTCAATCGTG 57.426 30.769 0.00 0.00 0.00 4.35
96 97 8.194769 ACTTTTCTTTTACCATTTCAATCGTGT 58.805 29.630 0.00 0.00 0.00 4.49
97 98 8.934507 TTTTCTTTTACCATTTCAATCGTGTT 57.065 26.923 0.00 0.00 0.00 3.32
98 99 8.934507 TTTCTTTTACCATTTCAATCGTGTTT 57.065 26.923 0.00 0.00 0.00 2.83
103 104 9.967346 TTTTACCATTTCAATCGTGTTTAATGA 57.033 25.926 0.00 0.00 0.00 2.57
104 105 9.619316 TTTACCATTTCAATCGTGTTTAATGAG 57.381 29.630 0.00 0.00 0.00 2.90
105 106 7.447374 ACCATTTCAATCGTGTTTAATGAGA 57.553 32.000 0.00 0.00 0.00 3.27
106 107 7.881142 ACCATTTCAATCGTGTTTAATGAGAA 58.119 30.769 0.00 0.00 0.00 2.87
107 108 8.356657 ACCATTTCAATCGTGTTTAATGAGAAA 58.643 29.630 0.00 0.00 0.00 2.52
108 109 9.357652 CCATTTCAATCGTGTTTAATGAGAAAT 57.642 29.630 0.00 0.00 32.73 2.17
114 115 9.840427 CAATCGTGTTTAATGAGAAATTTAGGT 57.160 29.630 0.00 0.00 0.00 3.08
115 116 9.840427 AATCGTGTTTAATGAGAAATTTAGGTG 57.160 29.630 0.00 0.00 0.00 4.00
116 117 8.385898 TCGTGTTTAATGAGAAATTTAGGTGT 57.614 30.769 0.00 0.00 0.00 4.16
117 118 8.842280 TCGTGTTTAATGAGAAATTTAGGTGTT 58.158 29.630 0.00 0.00 0.00 3.32
118 119 9.458374 CGTGTTTAATGAGAAATTTAGGTGTTT 57.542 29.630 0.00 0.00 0.00 2.83
126 127 5.571285 AGAAATTTAGGTGTTTCTCCCTCC 58.429 41.667 0.00 0.00 39.75 4.30
127 128 5.313506 AGAAATTTAGGTGTTTCTCCCTCCT 59.686 40.000 0.00 0.00 39.75 3.69
128 129 5.600669 AATTTAGGTGTTTCTCCCTCCTT 57.399 39.130 0.00 0.00 32.08 3.36
129 130 4.635699 TTTAGGTGTTTCTCCCTCCTTC 57.364 45.455 0.00 0.00 32.08 3.46
130 131 1.363246 AGGTGTTTCTCCCTCCTTCC 58.637 55.000 0.00 0.00 0.00 3.46
131 132 0.328592 GGTGTTTCTCCCTCCTTCCC 59.671 60.000 0.00 0.00 0.00 3.97
132 133 0.328592 GTGTTTCTCCCTCCTTCCCC 59.671 60.000 0.00 0.00 0.00 4.81
133 134 1.198759 TGTTTCTCCCTCCTTCCCCG 61.199 60.000 0.00 0.00 0.00 5.73
134 135 1.160145 TTTCTCCCTCCTTCCCCGT 59.840 57.895 0.00 0.00 0.00 5.28
135 136 0.414629 TTTCTCCCTCCTTCCCCGTA 59.585 55.000 0.00 0.00 0.00 4.02
136 137 0.414629 TTCTCCCTCCTTCCCCGTAA 59.585 55.000 0.00 0.00 0.00 3.18
137 138 0.414629 TCTCCCTCCTTCCCCGTAAA 59.585 55.000 0.00 0.00 0.00 2.01
138 139 1.203338 TCTCCCTCCTTCCCCGTAAAA 60.203 52.381 0.00 0.00 0.00 1.52
139 140 1.631898 CTCCCTCCTTCCCCGTAAAAA 59.368 52.381 0.00 0.00 0.00 1.94
161 162 5.505173 AAAGTGAAGAGTGAACACATTGG 57.495 39.130 7.68 0.00 37.05 3.16
162 163 4.422073 AGTGAAGAGTGAACACATTGGA 57.578 40.909 7.68 0.00 37.05 3.53
163 164 4.978099 AGTGAAGAGTGAACACATTGGAT 58.022 39.130 7.68 0.00 37.05 3.41
164 165 6.114187 AGTGAAGAGTGAACACATTGGATA 57.886 37.500 7.68 0.00 37.05 2.59
165 166 6.715280 AGTGAAGAGTGAACACATTGGATAT 58.285 36.000 7.68 0.00 37.05 1.63
166 167 7.170965 AGTGAAGAGTGAACACATTGGATATT 58.829 34.615 7.68 0.00 37.05 1.28
167 168 7.667219 AGTGAAGAGTGAACACATTGGATATTT 59.333 33.333 7.68 0.00 37.05 1.40
168 169 8.299570 GTGAAGAGTGAACACATTGGATATTTT 58.700 33.333 7.68 0.00 35.06 1.82
169 170 8.859090 TGAAGAGTGAACACATTGGATATTTTT 58.141 29.630 7.68 0.00 0.00 1.94
170 171 9.132521 GAAGAGTGAACACATTGGATATTTTTG 57.867 33.333 7.68 0.00 0.00 2.44
171 172 7.605449 AGAGTGAACACATTGGATATTTTTGG 58.395 34.615 7.68 0.00 0.00 3.28
172 173 7.451255 AGAGTGAACACATTGGATATTTTTGGA 59.549 33.333 7.68 0.00 0.00 3.53
173 174 7.378181 AGTGAACACATTGGATATTTTTGGAC 58.622 34.615 7.68 0.00 0.00 4.02
174 175 7.015098 AGTGAACACATTGGATATTTTTGGACA 59.985 33.333 7.68 0.00 0.00 4.02
175 176 7.655328 GTGAACACATTGGATATTTTTGGACAA 59.345 33.333 0.00 0.00 0.00 3.18
176 177 7.655328 TGAACACATTGGATATTTTTGGACAAC 59.345 33.333 0.00 0.00 0.00 3.32
177 178 7.301868 ACACATTGGATATTTTTGGACAACT 57.698 32.000 0.00 0.00 0.00 3.16
178 179 7.153985 ACACATTGGATATTTTTGGACAACTG 58.846 34.615 0.00 0.00 0.00 3.16
179 180 7.153985 CACATTGGATATTTTTGGACAACTGT 58.846 34.615 0.00 0.00 0.00 3.55
180 181 7.116662 CACATTGGATATTTTTGGACAACTGTG 59.883 37.037 0.00 0.00 0.00 3.66
181 182 6.968263 TTGGATATTTTTGGACAACTGTGA 57.032 33.333 0.00 0.00 0.00 3.58
182 183 7.537596 TTGGATATTTTTGGACAACTGTGAT 57.462 32.000 0.00 0.00 0.00 3.06
183 184 7.537596 TGGATATTTTTGGACAACTGTGATT 57.462 32.000 0.00 0.00 0.00 2.57
184 185 7.601856 TGGATATTTTTGGACAACTGTGATTC 58.398 34.615 0.00 0.00 0.00 2.52
185 186 7.035612 GGATATTTTTGGACAACTGTGATTCC 58.964 38.462 0.00 0.00 0.00 3.01
186 187 5.867903 ATTTTTGGACAACTGTGATTCCA 57.132 34.783 2.11 2.11 36.31 3.53
187 188 5.867903 TTTTTGGACAACTGTGATTCCAT 57.132 34.783 6.22 0.00 37.97 3.41
188 189 4.852134 TTTGGACAACTGTGATTCCATG 57.148 40.909 6.22 0.00 37.97 3.66
189 190 2.794103 TGGACAACTGTGATTCCATGG 58.206 47.619 4.97 4.97 33.02 3.66
190 191 1.474077 GGACAACTGTGATTCCATGGC 59.526 52.381 6.96 0.00 0.00 4.40
191 192 1.131126 GACAACTGTGATTCCATGGCG 59.869 52.381 6.96 0.00 0.00 5.69
192 193 0.452987 CAACTGTGATTCCATGGCGG 59.547 55.000 6.96 0.00 0.00 6.13
193 194 1.315257 AACTGTGATTCCATGGCGGC 61.315 55.000 6.96 0.00 33.14 6.53
194 195 2.823593 TGTGATTCCATGGCGGCG 60.824 61.111 6.96 0.51 33.14 6.46
195 196 3.585990 GTGATTCCATGGCGGCGG 61.586 66.667 9.78 0.00 33.14 6.13
218 219 1.748493 GCTGATAGAGCCGGAGATAGG 59.252 57.143 5.05 0.00 42.54 2.57
219 220 2.374184 CTGATAGAGCCGGAGATAGGG 58.626 57.143 5.05 0.00 0.00 3.53
220 221 1.993301 TGATAGAGCCGGAGATAGGGA 59.007 52.381 5.05 0.00 0.00 4.20
221 222 2.291024 TGATAGAGCCGGAGATAGGGAC 60.291 54.545 5.05 0.00 0.00 4.46
222 223 0.036448 TAGAGCCGGAGATAGGGACG 59.964 60.000 5.05 0.00 0.00 4.79
223 224 1.228184 GAGCCGGAGATAGGGACGA 60.228 63.158 5.05 0.00 0.00 4.20
224 225 1.517210 GAGCCGGAGATAGGGACGAC 61.517 65.000 5.05 0.00 0.00 4.34
225 226 2.562876 GCCGGAGATAGGGACGACC 61.563 68.421 5.05 0.00 40.67 4.79
239 240 2.202756 GACCCGGTCGATCACTGC 60.203 66.667 0.65 0.00 0.00 4.40
240 241 2.994995 ACCCGGTCGATCACTGCA 60.995 61.111 0.00 0.00 0.00 4.41
241 242 2.264480 CCCGGTCGATCACTGCAA 59.736 61.111 0.00 0.00 0.00 4.08
242 243 1.811266 CCCGGTCGATCACTGCAAG 60.811 63.158 0.00 0.00 42.29 4.01
243 244 1.811266 CCGGTCGATCACTGCAAGG 60.811 63.158 0.00 0.00 39.30 3.61
244 245 1.811266 CGGTCGATCACTGCAAGGG 60.811 63.158 0.00 0.00 40.34 3.95
245 246 2.109126 GGTCGATCACTGCAAGGGC 61.109 63.158 0.00 0.00 37.19 5.19
246 247 2.125552 TCGATCACTGCAAGGGCG 60.126 61.111 0.00 0.00 45.35 6.13
247 248 2.125552 CGATCACTGCAAGGGCGA 60.126 61.111 0.00 0.00 45.35 5.54
248 249 2.169789 CGATCACTGCAAGGGCGAG 61.170 63.158 0.00 0.00 45.35 5.03
249 250 2.437359 ATCACTGCAAGGGCGAGC 60.437 61.111 0.00 0.00 45.35 5.03
250 251 3.984193 ATCACTGCAAGGGCGAGCC 62.984 63.158 5.37 5.37 45.35 4.70
256 257 4.473520 CAAGGGCGAGCCGGACAT 62.474 66.667 5.05 0.00 36.85 3.06
257 258 4.473520 AAGGGCGAGCCGGACATG 62.474 66.667 5.05 0.00 36.85 3.21
260 261 4.899239 GGCGAGCCGGACATGGAG 62.899 72.222 5.05 0.00 0.00 3.86
261 262 3.838271 GCGAGCCGGACATGGAGA 61.838 66.667 5.05 0.00 0.00 3.71
262 263 2.105128 CGAGCCGGACATGGAGAC 59.895 66.667 5.05 0.00 0.00 3.36
263 264 2.105128 GAGCCGGACATGGAGACG 59.895 66.667 5.05 0.00 0.00 4.18
264 265 2.362503 AGCCGGACATGGAGACGA 60.363 61.111 5.05 0.00 0.00 4.20
265 266 1.739338 GAGCCGGACATGGAGACGAT 61.739 60.000 5.05 0.00 0.00 3.73
266 267 1.592669 GCCGGACATGGAGACGATG 60.593 63.158 5.05 0.00 0.00 3.84
267 268 1.592669 CCGGACATGGAGACGATGC 60.593 63.158 0.00 0.00 0.00 3.91
268 269 1.946156 CGGACATGGAGACGATGCG 60.946 63.158 0.00 0.00 0.00 4.73
269 270 1.592669 GGACATGGAGACGATGCGG 60.593 63.158 0.00 0.00 0.00 5.69
270 271 2.202932 ACATGGAGACGATGCGGC 60.203 61.111 0.00 0.00 33.59 6.53
287 288 3.329743 CGGCTAGCAATGACATCAAAG 57.670 47.619 18.24 0.00 0.00 2.77
288 289 2.938451 CGGCTAGCAATGACATCAAAGA 59.062 45.455 18.24 0.00 0.00 2.52
289 290 3.242543 CGGCTAGCAATGACATCAAAGAC 60.243 47.826 18.24 0.00 0.00 3.01
290 291 3.944015 GGCTAGCAATGACATCAAAGACT 59.056 43.478 18.24 0.00 0.00 3.24
291 292 5.118990 GGCTAGCAATGACATCAAAGACTA 58.881 41.667 18.24 0.00 0.00 2.59
292 293 5.586243 GGCTAGCAATGACATCAAAGACTAA 59.414 40.000 18.24 0.00 0.00 2.24
293 294 6.261826 GGCTAGCAATGACATCAAAGACTAAT 59.738 38.462 18.24 0.00 0.00 1.73
294 295 7.201767 GGCTAGCAATGACATCAAAGACTAATT 60.202 37.037 18.24 0.00 0.00 1.40
295 296 7.642978 GCTAGCAATGACATCAAAGACTAATTG 59.357 37.037 10.63 0.00 0.00 2.32
296 297 7.692460 AGCAATGACATCAAAGACTAATTGA 57.308 32.000 0.00 0.00 40.76 2.57
297 298 8.289939 AGCAATGACATCAAAGACTAATTGAT 57.710 30.769 0.00 0.00 45.82 2.57
305 306 5.500234 TCAAAGACTAATTGATGAGGGTGG 58.500 41.667 0.00 0.00 32.10 4.61
306 307 4.510167 AAGACTAATTGATGAGGGTGGG 57.490 45.455 0.00 0.00 0.00 4.61
307 308 2.780010 AGACTAATTGATGAGGGTGGGG 59.220 50.000 0.00 0.00 0.00 4.96
308 309 1.215423 ACTAATTGATGAGGGTGGGGC 59.785 52.381 0.00 0.00 0.00 5.80
309 310 1.496429 CTAATTGATGAGGGTGGGGCT 59.504 52.381 0.00 0.00 0.00 5.19
310 311 0.032813 AATTGATGAGGGTGGGGCTG 60.033 55.000 0.00 0.00 0.00 4.85
311 312 2.578586 ATTGATGAGGGTGGGGCTGC 62.579 60.000 0.00 0.00 0.00 5.25
312 313 4.864334 GATGAGGGTGGGGCTGCG 62.864 72.222 0.00 0.00 0.00 5.18
319 320 4.195334 GTGGGGCTGCGGGATCAT 62.195 66.667 0.00 0.00 0.00 2.45
320 321 3.877450 TGGGGCTGCGGGATCATC 61.877 66.667 0.00 0.00 0.00 2.92
321 322 4.996434 GGGGCTGCGGGATCATCG 62.996 72.222 0.00 0.00 0.00 3.84
322 323 3.928779 GGGCTGCGGGATCATCGA 61.929 66.667 11.13 0.00 0.00 3.59
323 324 2.356793 GGCTGCGGGATCATCGAG 60.357 66.667 11.13 7.13 0.00 4.04
324 325 2.356793 GCTGCGGGATCATCGAGG 60.357 66.667 11.13 0.00 0.00 4.63
325 326 3.133014 CTGCGGGATCATCGAGGT 58.867 61.111 11.13 0.00 0.00 3.85
326 327 1.006805 CTGCGGGATCATCGAGGTC 60.007 63.158 11.13 0.00 0.00 3.85
327 328 2.049985 GCGGGATCATCGAGGTCG 60.050 66.667 11.13 0.00 41.45 4.79
328 329 2.645567 CGGGATCATCGAGGTCGG 59.354 66.667 0.00 0.00 40.29 4.79
329 330 2.340443 GGGATCATCGAGGTCGGC 59.660 66.667 0.00 0.00 40.29 5.54
330 331 2.498941 GGGATCATCGAGGTCGGCA 61.499 63.158 0.00 0.00 40.29 5.69
331 332 1.441729 GGATCATCGAGGTCGGCAA 59.558 57.895 0.00 0.00 40.29 4.52
332 333 0.179084 GGATCATCGAGGTCGGCAAA 60.179 55.000 0.00 0.00 40.29 3.68
333 334 1.212616 GATCATCGAGGTCGGCAAAG 58.787 55.000 0.00 0.00 40.29 2.77
334 335 0.179073 ATCATCGAGGTCGGCAAAGG 60.179 55.000 0.00 0.00 40.29 3.11
335 336 1.815421 CATCGAGGTCGGCAAAGGG 60.815 63.158 0.00 0.00 40.29 3.95
336 337 3.031417 ATCGAGGTCGGCAAAGGGG 62.031 63.158 0.00 0.00 40.29 4.79
337 338 4.016706 CGAGGTCGGCAAAGGGGT 62.017 66.667 0.00 0.00 35.37 4.95
338 339 2.359975 GAGGTCGGCAAAGGGGTG 60.360 66.667 0.00 0.00 0.00 4.61
339 340 3.175710 AGGTCGGCAAAGGGGTGT 61.176 61.111 0.00 0.00 0.00 4.16
340 341 2.203437 GGTCGGCAAAGGGGTGTT 60.203 61.111 0.00 0.00 0.00 3.32
341 342 1.073548 GGTCGGCAAAGGGGTGTTA 59.926 57.895 0.00 0.00 0.00 2.41
342 343 0.958876 GGTCGGCAAAGGGGTGTTAG 60.959 60.000 0.00 0.00 0.00 2.34
343 344 0.035739 GTCGGCAAAGGGGTGTTAGA 59.964 55.000 0.00 0.00 0.00 2.10
344 345 0.766131 TCGGCAAAGGGGTGTTAGAA 59.234 50.000 0.00 0.00 0.00 2.10
345 346 1.165270 CGGCAAAGGGGTGTTAGAAG 58.835 55.000 0.00 0.00 0.00 2.85
346 347 1.271163 CGGCAAAGGGGTGTTAGAAGA 60.271 52.381 0.00 0.00 0.00 2.87
347 348 2.618045 CGGCAAAGGGGTGTTAGAAGAT 60.618 50.000 0.00 0.00 0.00 2.40
348 349 2.755103 GGCAAAGGGGTGTTAGAAGATG 59.245 50.000 0.00 0.00 0.00 2.90
349 350 3.561313 GGCAAAGGGGTGTTAGAAGATGA 60.561 47.826 0.00 0.00 0.00 2.92
350 351 4.079253 GCAAAGGGGTGTTAGAAGATGAA 58.921 43.478 0.00 0.00 0.00 2.57
351 352 4.522789 GCAAAGGGGTGTTAGAAGATGAAA 59.477 41.667 0.00 0.00 0.00 2.69
352 353 5.335976 GCAAAGGGGTGTTAGAAGATGAAAG 60.336 44.000 0.00 0.00 0.00 2.62
353 354 4.576330 AGGGGTGTTAGAAGATGAAAGG 57.424 45.455 0.00 0.00 0.00 3.11
354 355 3.267031 AGGGGTGTTAGAAGATGAAAGGG 59.733 47.826 0.00 0.00 0.00 3.95
355 356 3.265995 GGGGTGTTAGAAGATGAAAGGGA 59.734 47.826 0.00 0.00 0.00 4.20
356 357 4.262617 GGGTGTTAGAAGATGAAAGGGAC 58.737 47.826 0.00 0.00 0.00 4.46
357 358 3.933332 GGTGTTAGAAGATGAAAGGGACG 59.067 47.826 0.00 0.00 0.00 4.79
358 359 4.322499 GGTGTTAGAAGATGAAAGGGACGA 60.322 45.833 0.00 0.00 0.00 4.20
359 360 4.626172 GTGTTAGAAGATGAAAGGGACGAC 59.374 45.833 0.00 0.00 0.00 4.34
360 361 4.282449 TGTTAGAAGATGAAAGGGACGACA 59.718 41.667 0.00 0.00 0.00 4.35
361 362 3.320673 AGAAGATGAAAGGGACGACAC 57.679 47.619 0.00 0.00 0.00 3.67
362 363 2.900546 AGAAGATGAAAGGGACGACACT 59.099 45.455 0.00 0.00 0.00 3.55
363 364 3.325135 AGAAGATGAAAGGGACGACACTT 59.675 43.478 0.00 0.00 42.05 3.16
364 365 3.045601 AGATGAAAGGGACGACACTTG 57.954 47.619 2.46 0.00 39.00 3.16
365 366 2.368875 AGATGAAAGGGACGACACTTGT 59.631 45.455 2.46 0.00 39.00 3.16
366 367 2.702592 TGAAAGGGACGACACTTGTT 57.297 45.000 2.46 0.00 39.00 2.83
367 368 2.993937 TGAAAGGGACGACACTTGTTT 58.006 42.857 2.46 0.00 39.00 2.83
368 369 3.349022 TGAAAGGGACGACACTTGTTTT 58.651 40.909 2.46 0.00 39.00 2.43
369 370 3.375922 TGAAAGGGACGACACTTGTTTTC 59.624 43.478 2.46 0.00 39.00 2.29
370 371 1.963172 AGGGACGACACTTGTTTTCC 58.037 50.000 0.00 2.79 0.00 3.13
371 372 1.489230 AGGGACGACACTTGTTTTCCT 59.511 47.619 9.10 0.00 32.70 3.36
372 373 2.092592 AGGGACGACACTTGTTTTCCTT 60.093 45.455 9.10 1.28 32.70 3.36
373 374 2.686405 GGGACGACACTTGTTTTCCTTT 59.314 45.455 9.10 0.00 32.70 3.11
374 375 3.129813 GGGACGACACTTGTTTTCCTTTT 59.870 43.478 9.10 0.00 32.70 2.27
375 376 4.381185 GGGACGACACTTGTTTTCCTTTTT 60.381 41.667 9.10 0.00 32.70 1.94
376 377 4.561213 GGACGACACTTGTTTTCCTTTTTG 59.439 41.667 0.00 0.00 0.00 2.44
377 378 5.128992 ACGACACTTGTTTTCCTTTTTGT 57.871 34.783 0.00 0.00 0.00 2.83
378 379 5.534407 ACGACACTTGTTTTCCTTTTTGTT 58.466 33.333 0.00 0.00 0.00 2.83
379 380 5.404066 ACGACACTTGTTTTCCTTTTTGTTG 59.596 36.000 0.00 0.00 0.00 3.33
380 381 5.404066 CGACACTTGTTTTCCTTTTTGTTGT 59.596 36.000 0.00 0.00 0.00 3.32
381 382 6.074034 CGACACTTGTTTTCCTTTTTGTTGTT 60.074 34.615 0.00 0.00 0.00 2.83
382 383 6.953843 ACACTTGTTTTCCTTTTTGTTGTTG 58.046 32.000 0.00 0.00 0.00 3.33
383 384 6.540551 ACACTTGTTTTCCTTTTTGTTGTTGT 59.459 30.769 0.00 0.00 0.00 3.32
384 385 7.066404 ACACTTGTTTTCCTTTTTGTTGTTGTT 59.934 29.630 0.00 0.00 0.00 2.83
385 386 7.375544 CACTTGTTTTCCTTTTTGTTGTTGTTG 59.624 33.333 0.00 0.00 0.00 3.33
386 387 6.927294 TGTTTTCCTTTTTGTTGTTGTTGT 57.073 29.167 0.00 0.00 0.00 3.32
387 388 7.321745 TGTTTTCCTTTTTGTTGTTGTTGTT 57.678 28.000 0.00 0.00 0.00 2.83
388 389 7.189512 TGTTTTCCTTTTTGTTGTTGTTGTTG 58.810 30.769 0.00 0.00 0.00 3.33
389 390 6.927294 TTTCCTTTTTGTTGTTGTTGTTGT 57.073 29.167 0.00 0.00 0.00 3.32
390 391 6.927294 TTCCTTTTTGTTGTTGTTGTTGTT 57.073 29.167 0.00 0.00 0.00 2.83
391 392 6.292389 TCCTTTTTGTTGTTGTTGTTGTTG 57.708 33.333 0.00 0.00 0.00 3.33
392 393 5.817816 TCCTTTTTGTTGTTGTTGTTGTTGT 59.182 32.000 0.00 0.00 0.00 3.32
393 394 6.018669 TCCTTTTTGTTGTTGTTGTTGTTGTC 60.019 34.615 0.00 0.00 0.00 3.18
394 395 6.018343 CCTTTTTGTTGTTGTTGTTGTTGTCT 60.018 34.615 0.00 0.00 0.00 3.41
395 396 6.910536 TTTTGTTGTTGTTGTTGTTGTCTT 57.089 29.167 0.00 0.00 0.00 3.01
396 397 5.896922 TTGTTGTTGTTGTTGTTGTCTTG 57.103 34.783 0.00 0.00 0.00 3.02
397 398 4.938080 TGTTGTTGTTGTTGTTGTCTTGT 58.062 34.783 0.00 0.00 0.00 3.16
398 399 5.352284 TGTTGTTGTTGTTGTTGTCTTGTT 58.648 33.333 0.00 0.00 0.00 2.83
399 400 5.233050 TGTTGTTGTTGTTGTTGTCTTGTTG 59.767 36.000 0.00 0.00 0.00 3.33
400 401 5.188327 TGTTGTTGTTGTTGTCTTGTTGA 57.812 34.783 0.00 0.00 0.00 3.18
401 402 5.218885 TGTTGTTGTTGTTGTCTTGTTGAG 58.781 37.500 0.00 0.00 0.00 3.02
402 403 5.009110 TGTTGTTGTTGTTGTCTTGTTGAGA 59.991 36.000 0.00 0.00 0.00 3.27
403 404 5.697473 TGTTGTTGTTGTCTTGTTGAGAA 57.303 34.783 0.00 0.00 35.79 2.87
404 405 6.078202 TGTTGTTGTTGTCTTGTTGAGAAA 57.922 33.333 0.00 0.00 35.79 2.52
405 406 6.507900 TGTTGTTGTTGTCTTGTTGAGAAAA 58.492 32.000 0.00 0.00 35.79 2.29
409 410 3.691498 GTTGTCTTGTTGAGAAAACGGG 58.309 45.455 0.00 0.00 41.50 5.28
410 411 3.269538 TGTCTTGTTGAGAAAACGGGA 57.730 42.857 0.00 0.00 35.79 5.14
411 412 2.940410 TGTCTTGTTGAGAAAACGGGAC 59.060 45.455 0.00 0.00 35.79 4.46
412 413 2.940410 GTCTTGTTGAGAAAACGGGACA 59.060 45.455 0.00 0.00 35.79 4.02
413 414 3.375922 GTCTTGTTGAGAAAACGGGACAA 59.624 43.478 0.00 0.00 35.79 3.18
414 415 3.375922 TCTTGTTGAGAAAACGGGACAAC 59.624 43.478 0.00 0.00 40.44 3.32
415 416 2.712709 TGTTGAGAAAACGGGACAACA 58.287 42.857 0.00 0.00 45.03 3.33
416 417 3.082548 TGTTGAGAAAACGGGACAACAA 58.917 40.909 0.00 0.00 44.53 2.83
417 418 3.119779 TGTTGAGAAAACGGGACAACAAC 60.120 43.478 0.00 0.00 44.53 3.32
418 419 1.666700 TGAGAAAACGGGACAACAACG 59.333 47.619 0.00 0.00 0.00 4.10
419 420 1.003223 GAGAAAACGGGACAACAACGG 60.003 52.381 0.00 0.00 0.00 4.44
420 421 0.593008 GAAAACGGGACAACAACGGC 60.593 55.000 0.00 0.00 0.00 5.68
421 422 1.033202 AAAACGGGACAACAACGGCT 61.033 50.000 0.00 0.00 0.00 5.52
422 423 1.033202 AAACGGGACAACAACGGCTT 61.033 50.000 0.00 0.00 0.00 4.35
423 424 1.441732 AACGGGACAACAACGGCTTC 61.442 55.000 0.00 0.00 0.00 3.86
424 425 2.613506 CGGGACAACAACGGCTTCC 61.614 63.158 0.00 0.00 0.00 3.46
425 426 1.228154 GGGACAACAACGGCTTCCT 60.228 57.895 0.00 0.00 0.00 3.36
426 427 0.822121 GGGACAACAACGGCTTCCTT 60.822 55.000 0.00 0.00 0.00 3.36
427 428 1.029681 GGACAACAACGGCTTCCTTT 58.970 50.000 0.00 0.00 0.00 3.11
428 429 1.407618 GGACAACAACGGCTTCCTTTT 59.592 47.619 0.00 0.00 0.00 2.27
429 430 2.159156 GGACAACAACGGCTTCCTTTTT 60.159 45.455 0.00 0.00 0.00 1.94
450 451 5.630661 TTTTTCGAGACAAAGGACAACAA 57.369 34.783 0.00 0.00 0.00 2.83
451 452 4.609691 TTTCGAGACAAAGGACAACAAC 57.390 40.909 0.00 0.00 0.00 3.32
452 453 2.198406 TCGAGACAAAGGACAACAACG 58.802 47.619 0.00 0.00 0.00 4.10
453 454 2.159212 TCGAGACAAAGGACAACAACGA 60.159 45.455 0.00 0.00 0.00 3.85
454 455 2.034001 CGAGACAAAGGACAACAACGAC 60.034 50.000 0.00 0.00 0.00 4.34
455 456 1.931172 AGACAAAGGACAACAACGACG 59.069 47.619 0.00 0.00 0.00 5.12
456 457 0.375803 ACAAAGGACAACAACGACGC 59.624 50.000 0.00 0.00 0.00 5.19
457 458 0.655733 CAAAGGACAACAACGACGCT 59.344 50.000 0.00 0.00 0.00 5.07
458 459 0.655733 AAAGGACAACAACGACGCTG 59.344 50.000 0.00 0.00 0.00 5.18
459 460 0.461339 AAGGACAACAACGACGCTGT 60.461 50.000 0.00 0.00 0.00 4.40
460 461 0.461339 AGGACAACAACGACGCTGTT 60.461 50.000 10.70 10.70 37.49 3.16
465 466 2.972505 CAACGACGCTGTTGGGCT 60.973 61.111 11.42 0.00 44.27 5.19
466 467 2.665185 AACGACGCTGTTGGGCTC 60.665 61.111 0.00 0.00 0.00 4.70
467 468 3.165160 AACGACGCTGTTGGGCTCT 62.165 57.895 0.00 0.00 0.00 4.09
468 469 2.357517 CGACGCTGTTGGGCTCTT 60.358 61.111 0.00 0.00 0.00 2.85
469 470 2.671177 CGACGCTGTTGGGCTCTTG 61.671 63.158 0.00 0.00 0.00 3.02
470 471 2.281761 ACGCTGTTGGGCTCTTGG 60.282 61.111 0.00 0.00 0.00 3.61
471 472 3.058160 CGCTGTTGGGCTCTTGGG 61.058 66.667 0.00 0.00 0.00 4.12
472 473 3.376918 GCTGTTGGGCTCTTGGGC 61.377 66.667 0.00 0.00 40.05 5.36
481 482 3.176728 GCTCTTGGGCCTTTAGACC 57.823 57.895 4.53 0.00 0.00 3.85
482 483 0.328258 GCTCTTGGGCCTTTAGACCA 59.672 55.000 4.53 0.00 0.00 4.02
483 484 1.064389 GCTCTTGGGCCTTTAGACCAT 60.064 52.381 4.53 0.00 33.63 3.55
484 485 2.924421 CTCTTGGGCCTTTAGACCATC 58.076 52.381 4.53 0.00 33.63 3.51
485 486 1.564348 TCTTGGGCCTTTAGACCATCC 59.436 52.381 4.53 0.00 33.63 3.51
486 487 0.254747 TTGGGCCTTTAGACCATCCG 59.745 55.000 4.53 0.00 33.63 4.18
487 488 0.912487 TGGGCCTTTAGACCATCCGT 60.912 55.000 4.53 0.00 0.00 4.69
488 489 0.463833 GGGCCTTTAGACCATCCGTG 60.464 60.000 0.84 0.00 0.00 4.94
489 490 1.095807 GGCCTTTAGACCATCCGTGC 61.096 60.000 0.00 0.00 0.00 5.34
499 500 4.143333 ATCCGTGCCGTTCCTCCG 62.143 66.667 0.00 0.00 0.00 4.63
501 502 4.675029 CCGTGCCGTTCCTCCGTT 62.675 66.667 0.00 0.00 0.00 4.44
502 503 3.411351 CGTGCCGTTCCTCCGTTG 61.411 66.667 0.00 0.00 0.00 4.10
509 510 3.565214 TTCCTCCGTTGCAGGCCA 61.565 61.111 5.01 0.00 0.00 5.36
510 511 2.905996 TTCCTCCGTTGCAGGCCAT 61.906 57.895 5.01 0.00 0.00 4.40
511 512 1.558167 TTCCTCCGTTGCAGGCCATA 61.558 55.000 5.01 0.00 0.00 2.74
517 519 4.100963 CCTCCGTTGCAGGCCATATATATA 59.899 45.833 5.01 0.00 0.00 0.86
537 539 3.124921 GGTGATCCAACCACGCCG 61.125 66.667 0.00 0.00 40.22 6.46
538 540 3.799755 GTGATCCAACCACGCCGC 61.800 66.667 0.00 0.00 0.00 6.53
617 627 4.457496 CGTGCGCCCATCTCCACT 62.457 66.667 4.18 0.00 0.00 4.00
644 654 4.753877 TCGCCGTCGACGCTTCTG 62.754 66.667 31.73 18.63 40.21 3.02
681 691 0.532573 GGATCGAGTGGTGCTTGAGA 59.467 55.000 0.00 0.00 40.71 3.27
689 699 1.293498 GGTGCTTGAGAAGAGGCGA 59.707 57.895 0.00 0.00 0.00 5.54
725 736 1.377994 CCTTTGGGAGCTGCAGTCT 59.622 57.895 16.64 12.91 33.58 3.24
816 860 4.504132 GCAATCGAAGCGACTCCT 57.496 55.556 0.00 0.00 39.18 3.69
853 898 2.558359 CCGGATTCAAAGCAGTCCTTTT 59.442 45.455 0.00 0.00 41.75 2.27
891 936 2.094675 CAGGCCCTGTTTCGAATTCAT 58.905 47.619 1.39 0.00 0.00 2.57
893 938 3.694072 CAGGCCCTGTTTCGAATTCATTA 59.306 43.478 1.39 0.00 0.00 1.90
913 958 0.768622 TCCGAGTTTCCATTGGTGGT 59.231 50.000 1.86 0.00 46.16 4.16
945 995 6.328714 CAGCAGCTATATATATATCTGGCCG 58.671 44.000 24.73 11.04 34.58 6.13
951 1001 0.032912 TATATATCTGGCCGGGCGGA 60.033 55.000 38.34 38.34 37.50 5.54
975 1026 1.523032 CGGTACCCGCCAATCTTCC 60.523 63.158 6.25 0.00 41.17 3.46
987 1038 2.171448 CCAATCTTCCGAGGAGACCAAT 59.829 50.000 0.00 0.00 0.00 3.16
988 1039 3.370953 CCAATCTTCCGAGGAGACCAATT 60.371 47.826 0.00 0.00 0.00 2.32
989 1040 3.828875 ATCTTCCGAGGAGACCAATTC 57.171 47.619 0.00 0.00 0.00 2.17
990 1041 2.821437 TCTTCCGAGGAGACCAATTCT 58.179 47.619 0.00 0.00 37.23 2.40
991 1042 3.173965 TCTTCCGAGGAGACCAATTCTT 58.826 45.455 0.00 0.00 33.22 2.52
998 1049 1.671850 GGAGACCAATTCTTGTCGCGA 60.672 52.381 3.71 3.71 33.22 5.87
1089 1152 1.678970 GCCATGGGGGTGAGTTCAC 60.679 63.158 15.13 3.67 45.72 3.18
1099 1163 2.897969 GGGTGAGTTCACTGTCCTCTTA 59.102 50.000 11.67 0.00 45.73 2.10
1106 1171 5.337788 AGTTCACTGTCCTCTTAATCTCCT 58.662 41.667 0.00 0.00 0.00 3.69
1107 1172 6.494952 AGTTCACTGTCCTCTTAATCTCCTA 58.505 40.000 0.00 0.00 0.00 2.94
1137 1272 9.695526 TTTTCAGATAAAAACAGTGAATCATGG 57.304 29.630 0.00 0.00 0.00 3.66
1139 1274 7.819644 TCAGATAAAAACAGTGAATCATGGTG 58.180 34.615 0.00 0.00 0.00 4.17
1140 1275 6.529125 CAGATAAAAACAGTGAATCATGGTGC 59.471 38.462 0.00 0.00 0.00 5.01
1141 1276 4.669206 AAAAACAGTGAATCATGGTGCA 57.331 36.364 0.00 0.00 0.00 4.57
1148 1283 4.862574 CAGTGAATCATGGTGCAAATTCTG 59.137 41.667 0.00 0.00 0.00 3.02
1165 1300 2.945278 TCTGCGTCAAAATTTGCATCC 58.055 42.857 0.00 0.00 36.64 3.51
1169 1304 3.740321 TGCGTCAAAATTTGCATCCTTTC 59.260 39.130 0.00 0.00 31.31 2.62
1172 1307 5.633182 GCGTCAAAATTTGCATCCTTTCTTA 59.367 36.000 0.00 0.00 0.00 2.10
1173 1308 6.311200 GCGTCAAAATTTGCATCCTTTCTTAT 59.689 34.615 0.00 0.00 0.00 1.73
1175 1310 7.756722 CGTCAAAATTTGCATCCTTTCTTATCT 59.243 33.333 0.00 0.00 0.00 1.98
1176 1311 9.080915 GTCAAAATTTGCATCCTTTCTTATCTC 57.919 33.333 0.00 0.00 0.00 2.75
1177 1312 9.028284 TCAAAATTTGCATCCTTTCTTATCTCT 57.972 29.630 0.00 0.00 0.00 3.10
1268 1595 0.250467 TGCAGAAGGGCAGTCAAGAC 60.250 55.000 0.00 0.00 39.25 3.01
1275 1602 1.215647 GGCAGTCAAGACGATCGGT 59.784 57.895 20.98 4.89 36.20 4.69
1313 1640 4.566545 TGACATTTTGCTCAACATCGTT 57.433 36.364 0.00 0.00 0.00 3.85
1335 1662 0.953471 CCGGCTTGGAATTGTCGACA 60.953 55.000 15.76 15.76 42.00 4.35
1400 1727 2.819019 TGCCATGCTCTCAAAAATCGAA 59.181 40.909 0.00 0.00 0.00 3.71
1421 1748 2.649531 TCGTGGTTGGTTCCTTTCAT 57.350 45.000 0.00 0.00 0.00 2.57
1426 1753 2.171003 GGTTGGTTCCTTTCATCTGGG 58.829 52.381 0.00 0.00 0.00 4.45
1461 1788 0.110373 CGTGACGAGTGACGATGTCA 60.110 55.000 9.49 4.02 42.67 3.58
1484 1811 2.668550 GCCAGTTCCACCACCGTC 60.669 66.667 0.00 0.00 0.00 4.79
1488 1815 0.531090 CAGTTCCACCACCGTCGAAA 60.531 55.000 0.00 0.00 0.00 3.46
1489 1816 0.395312 AGTTCCACCACCGTCGAAAT 59.605 50.000 0.00 0.00 0.00 2.17
1524 1851 0.113580 GGAAAACAGGCCCCCAAGTA 59.886 55.000 0.00 0.00 0.00 2.24
1540 1867 4.994852 CCCAAGTATATACACCATTCACCG 59.005 45.833 15.18 0.00 0.00 4.94
1541 1868 5.221561 CCCAAGTATATACACCATTCACCGA 60.222 44.000 15.18 0.00 0.00 4.69
1640 1967 0.595567 TTGGTTCGTCCGAGTTCACG 60.596 55.000 0.00 0.00 39.52 4.35
1650 1977 2.988493 TCCGAGTTCACGATTTTAACGG 59.012 45.455 0.00 0.00 39.30 4.44
1683 2010 5.434352 CAGGAAATGCACCTATGATGAAG 57.566 43.478 0.00 0.00 35.84 3.02
1691 2018 1.133976 ACCTATGATGAAGTGGCTGCC 60.134 52.381 12.87 12.87 0.00 4.85
1796 2123 2.947243 GCTGGCTCAATCAGATTTCCCA 60.947 50.000 0.00 0.00 34.36 4.37
1883 2210 4.523173 TCGTCTTCTCTACAAGTGGAACAT 59.477 41.667 0.00 0.00 44.52 2.71
1927 2254 7.825761 TGAGATTATCAACTGCAGATTTGAGAA 59.174 33.333 23.35 22.47 37.35 2.87
1983 2310 4.097892 CACTGCTGACTTTTAAAGGTTGGT 59.902 41.667 9.64 0.00 0.00 3.67
2063 2390 9.331282 AGCATCACTAATATTGGTCTTTCTTAC 57.669 33.333 0.78 0.00 0.00 2.34
2150 2477 1.812571 AGATGCGAAAAGGTTTGCGAT 59.187 42.857 7.03 0.00 45.87 4.58
2178 2505 4.706962 ACCTCTTGGTCATGCTAATTTTCC 59.293 41.667 0.00 0.00 44.78 3.13
2192 2519 6.922957 TGCTAATTTTCCTTGTTCATGTTGTC 59.077 34.615 0.00 0.00 0.00 3.18
2194 2521 7.437862 GCTAATTTTCCTTGTTCATGTTGTCAA 59.562 33.333 0.00 0.00 0.00 3.18
2195 2522 7.775397 AATTTTCCTTGTTCATGTTGTCAAG 57.225 32.000 0.00 4.16 37.57 3.02
2196 2523 6.522625 TTTTCCTTGTTCATGTTGTCAAGA 57.477 33.333 16.66 0.00 39.39 3.02
2198 2525 5.694231 TCCTTGTTCATGTTGTCAAGATG 57.306 39.130 14.97 14.97 39.39 2.90
2204 2531 7.800155 TGTTCATGTTGTCAAGATGTCTTAA 57.200 32.000 19.11 6.54 34.10 1.85
2205 2532 7.864686 TGTTCATGTTGTCAAGATGTCTTAAG 58.135 34.615 19.11 0.00 34.10 1.85
2210 2537 6.494842 TGTTGTCAAGATGTCTTAAGTTTGC 58.505 36.000 1.63 0.00 34.28 3.68
2211 2538 5.689383 TGTCAAGATGTCTTAAGTTTGCC 57.311 39.130 1.63 0.00 34.28 4.52
2219 2546 8.353423 AGATGTCTTAAGTTTGCCAAACATAT 57.647 30.769 21.45 10.12 43.79 1.78
2221 2548 8.761575 ATGTCTTAAGTTTGCCAAACATATTG 57.238 30.769 21.45 10.30 43.79 1.90
2222 2549 7.721402 TGTCTTAAGTTTGCCAAACATATTGT 58.279 30.769 21.45 0.00 43.79 2.71
2223 2550 7.651304 TGTCTTAAGTTTGCCAAACATATTGTG 59.349 33.333 21.45 5.87 43.79 3.33
2224 2551 7.651704 GTCTTAAGTTTGCCAAACATATTGTGT 59.348 33.333 21.45 0.00 43.79 3.72
2238 2567 6.738114 ACATATTGTGTTTGTCTTCACCTTG 58.262 36.000 0.00 0.00 38.01 3.61
2250 2579 2.655090 TCACCTTGTGCAGATTTGGA 57.345 45.000 5.33 0.00 32.98 3.53
2366 2695 3.312697 GGACGTTATTCATTCTCCAAGGC 59.687 47.826 0.00 0.00 0.00 4.35
2419 2748 8.773404 CAGGTAAACTGTTTGTAGCTAATAGT 57.227 34.615 15.69 0.00 42.42 2.12
2455 2784 4.470334 AAGTTGCAAAAGGTGATGTTGT 57.530 36.364 0.00 0.00 0.00 3.32
2463 2792 4.918810 AAAGGTGATGTTGTCCTGTTTC 57.081 40.909 0.00 0.00 0.00 2.78
2491 2820 8.859236 ATATGATGCACATAGTTTAGATGCTT 57.141 30.769 12.43 0.00 43.48 3.91
2493 2822 4.621068 TGCACATAGTTTAGATGCTTGC 57.379 40.909 0.00 0.00 37.20 4.01
2494 2823 4.009002 TGCACATAGTTTAGATGCTTGCA 58.991 39.130 0.00 0.00 35.27 4.08
2497 2826 5.449588 GCACATAGTTTAGATGCTTGCATGT 60.450 40.000 13.18 11.47 30.56 3.21
2499 2828 6.037940 CACATAGTTTAGATGCTTGCATGTCT 59.962 38.462 13.18 8.24 0.00 3.41
2510 2839 3.800628 GCATGTCTGCCCAAGTTTC 57.199 52.632 0.00 0.00 42.88 2.78
2521 2850 5.067283 TCTGCCCAAGTTTCTTTCTTGTAAC 59.933 40.000 0.00 0.00 40.15 2.50
2536 2865 6.067263 TCTTGTAACAACCTTGTGTAATGC 57.933 37.500 0.00 0.00 41.31 3.56
2571 2900 0.323725 ATGGAATGCAGGTGTGGGAC 60.324 55.000 0.00 0.00 0.00 4.46
2589 2918 4.937015 TGGGACAATGTATGCGATATGATG 59.063 41.667 0.00 0.00 31.92 3.07
2590 2919 4.333649 GGGACAATGTATGCGATATGATGG 59.666 45.833 0.00 0.00 0.00 3.51
2595 2924 4.456280 TGTATGCGATATGATGGGAGAC 57.544 45.455 0.00 0.00 0.00 3.36
2619 2948 2.355513 GGAAGAGAGGAAGAAGCATGCA 60.356 50.000 21.98 0.00 0.00 3.96
2647 2976 0.693049 GGAGAGGAAGGACAAAGGCA 59.307 55.000 0.00 0.00 0.00 4.75
2934 3263 1.146263 GATACACTTCCCGGGCTGG 59.854 63.158 18.49 5.01 37.55 4.85
2952 3281 4.694233 AGTGCCGAGGTGCTGCAG 62.694 66.667 10.11 10.11 37.41 4.41
2957 3286 2.513204 CGAGGTGCTGCAGGGATG 60.513 66.667 17.12 0.00 0.00 3.51
2974 3303 3.057526 GGGATGAAGCTTGTTGTTGGTAC 60.058 47.826 2.10 0.00 0.00 3.34
2977 3306 0.306533 AAGCTTGTTGTTGGTACGCG 59.693 50.000 3.53 3.53 0.00 6.01
3010 3339 1.748493 TCAACTTGCTGGGTTGACAAC 59.252 47.619 9.97 9.97 45.14 3.32
3508 4099 7.280428 GCCTTTTACAGAGGGAGTATAAAGAAC 59.720 40.741 0.00 0.00 34.75 3.01
3509 4100 7.491696 CCTTTTACAGAGGGAGTATAAAGAACG 59.508 40.741 0.00 0.00 30.27 3.95
3510 4101 7.707624 TTTACAGAGGGAGTATAAAGAACGA 57.292 36.000 0.00 0.00 0.00 3.85
3511 4102 7.893124 TTACAGAGGGAGTATAAAGAACGAT 57.107 36.000 0.00 0.00 0.00 3.73
3512 4103 8.985315 TTACAGAGGGAGTATAAAGAACGATA 57.015 34.615 0.00 0.00 0.00 2.92
3513 4104 7.274603 ACAGAGGGAGTATAAAGAACGATAC 57.725 40.000 0.00 0.00 0.00 2.24
3514 4105 7.061688 ACAGAGGGAGTATAAAGAACGATACT 58.938 38.462 0.00 0.00 40.73 2.12
3515 4106 7.013464 ACAGAGGGAGTATAAAGAACGATACTG 59.987 40.741 0.00 0.00 38.66 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.632855 ACAAGTTAGCAAGCAAAGAGC 57.367 42.857 0.00 0.00 46.19 4.09
32 33 5.673337 TGTACAAGTTAGCAAGCAAAGAG 57.327 39.130 0.00 0.00 0.00 2.85
33 34 5.530915 ACATGTACAAGTTAGCAAGCAAAGA 59.469 36.000 0.00 0.00 0.00 2.52
34 35 5.762045 ACATGTACAAGTTAGCAAGCAAAG 58.238 37.500 0.00 0.00 0.00 2.77
35 36 5.766150 ACATGTACAAGTTAGCAAGCAAA 57.234 34.783 0.00 0.00 0.00 3.68
36 37 5.766150 AACATGTACAAGTTAGCAAGCAA 57.234 34.783 14.47 0.00 0.00 3.91
37 38 5.766150 AAACATGTACAAGTTAGCAAGCA 57.234 34.783 16.19 0.00 0.00 3.91
38 39 6.251376 GCATAAACATGTACAAGTTAGCAAGC 59.749 38.462 16.19 12.14 0.00 4.01
39 40 6.747280 GGCATAAACATGTACAAGTTAGCAAG 59.253 38.462 24.33 13.47 0.00 4.01
40 41 6.616947 GGCATAAACATGTACAAGTTAGCAA 58.383 36.000 24.33 11.67 0.00 3.91
41 42 5.163804 CGGCATAAACATGTACAAGTTAGCA 60.164 40.000 24.33 13.19 0.00 3.49
42 43 5.064198 TCGGCATAAACATGTACAAGTTAGC 59.936 40.000 16.19 18.03 0.00 3.09
43 44 6.533723 TCTCGGCATAAACATGTACAAGTTAG 59.466 38.462 16.19 8.68 0.00 2.34
44 45 6.399743 TCTCGGCATAAACATGTACAAGTTA 58.600 36.000 16.19 7.63 0.00 2.24
45 46 5.242434 TCTCGGCATAAACATGTACAAGTT 58.758 37.500 10.57 10.57 0.00 2.66
46 47 4.827692 TCTCGGCATAAACATGTACAAGT 58.172 39.130 0.00 0.00 0.00 3.16
47 48 5.991328 ATCTCGGCATAAACATGTACAAG 57.009 39.130 0.00 0.00 0.00 3.16
48 49 6.578944 AGTATCTCGGCATAAACATGTACAA 58.421 36.000 0.00 0.00 0.00 2.41
49 50 6.156748 AGTATCTCGGCATAAACATGTACA 57.843 37.500 0.00 0.00 0.00 2.90
50 51 7.478520 AAAGTATCTCGGCATAAACATGTAC 57.521 36.000 0.00 0.00 0.00 2.90
51 52 7.985184 AGAAAAGTATCTCGGCATAAACATGTA 59.015 33.333 0.00 0.00 0.00 2.29
52 53 6.823689 AGAAAAGTATCTCGGCATAAACATGT 59.176 34.615 0.00 0.00 0.00 3.21
53 54 7.251704 AGAAAAGTATCTCGGCATAAACATG 57.748 36.000 0.00 0.00 0.00 3.21
54 55 7.865706 AAGAAAAGTATCTCGGCATAAACAT 57.134 32.000 0.00 0.00 0.00 2.71
55 56 7.681939 AAAGAAAAGTATCTCGGCATAAACA 57.318 32.000 0.00 0.00 0.00 2.83
56 57 9.486857 GTAAAAGAAAAGTATCTCGGCATAAAC 57.513 33.333 0.00 0.00 0.00 2.01
57 58 8.671028 GGTAAAAGAAAAGTATCTCGGCATAAA 58.329 33.333 0.00 0.00 0.00 1.40
58 59 7.825270 TGGTAAAAGAAAAGTATCTCGGCATAA 59.175 33.333 0.00 0.00 0.00 1.90
59 60 7.332557 TGGTAAAAGAAAAGTATCTCGGCATA 58.667 34.615 0.00 0.00 0.00 3.14
60 61 6.177610 TGGTAAAAGAAAAGTATCTCGGCAT 58.822 36.000 0.00 0.00 0.00 4.40
61 62 5.553123 TGGTAAAAGAAAAGTATCTCGGCA 58.447 37.500 0.00 0.00 0.00 5.69
62 63 6.679327 ATGGTAAAAGAAAAGTATCTCGGC 57.321 37.500 0.00 0.00 0.00 5.54
63 64 8.726988 TGAAATGGTAAAAGAAAAGTATCTCGG 58.273 33.333 0.00 0.00 0.00 4.63
69 70 9.672086 CACGATTGAAATGGTAAAAGAAAAGTA 57.328 29.630 0.00 0.00 0.00 2.24
70 71 8.194769 ACACGATTGAAATGGTAAAAGAAAAGT 58.805 29.630 0.00 0.00 0.00 2.66
71 72 8.574196 ACACGATTGAAATGGTAAAAGAAAAG 57.426 30.769 0.00 0.00 0.00 2.27
72 73 8.934507 AACACGATTGAAATGGTAAAAGAAAA 57.065 26.923 0.00 0.00 0.00 2.29
73 74 8.934507 AAACACGATTGAAATGGTAAAAGAAA 57.065 26.923 0.00 0.00 0.00 2.52
77 78 9.967346 TCATTAAACACGATTGAAATGGTAAAA 57.033 25.926 0.00 0.00 0.00 1.52
78 79 9.619316 CTCATTAAACACGATTGAAATGGTAAA 57.381 29.630 0.00 0.00 0.00 2.01
79 80 9.004717 TCTCATTAAACACGATTGAAATGGTAA 57.995 29.630 0.00 0.00 0.00 2.85
80 81 8.554835 TCTCATTAAACACGATTGAAATGGTA 57.445 30.769 0.00 0.00 0.00 3.25
81 82 7.447374 TCTCATTAAACACGATTGAAATGGT 57.553 32.000 0.00 0.00 0.00 3.55
82 83 8.741101 TTTCTCATTAAACACGATTGAAATGG 57.259 30.769 0.00 0.00 0.00 3.16
88 89 9.840427 ACCTAAATTTCTCATTAAACACGATTG 57.160 29.630 0.00 0.00 0.00 2.67
89 90 9.840427 CACCTAAATTTCTCATTAAACACGATT 57.160 29.630 0.00 0.00 0.00 3.34
90 91 9.010029 ACACCTAAATTTCTCATTAAACACGAT 57.990 29.630 0.00 0.00 0.00 3.73
91 92 8.385898 ACACCTAAATTTCTCATTAAACACGA 57.614 30.769 0.00 0.00 0.00 4.35
92 93 9.458374 AAACACCTAAATTTCTCATTAAACACG 57.542 29.630 0.00 0.00 0.00 4.49
103 104 5.313506 AGGAGGGAGAAACACCTAAATTTCT 59.686 40.000 0.00 0.00 45.61 2.52
104 105 5.571285 AGGAGGGAGAAACACCTAAATTTC 58.429 41.667 0.00 0.00 37.18 2.17
105 106 5.600669 AGGAGGGAGAAACACCTAAATTT 57.399 39.130 0.00 0.00 37.18 1.82
106 107 5.516768 GGAAGGAGGGAGAAACACCTAAATT 60.517 44.000 0.00 0.00 37.18 1.82
107 108 4.018324 GGAAGGAGGGAGAAACACCTAAAT 60.018 45.833 0.00 0.00 37.18 1.40
108 109 3.329814 GGAAGGAGGGAGAAACACCTAAA 59.670 47.826 0.00 0.00 37.18 1.85
109 110 2.910977 GGAAGGAGGGAGAAACACCTAA 59.089 50.000 0.00 0.00 37.18 2.69
110 111 2.547990 GGAAGGAGGGAGAAACACCTA 58.452 52.381 0.00 0.00 37.18 3.08
111 112 1.363246 GGAAGGAGGGAGAAACACCT 58.637 55.000 0.00 0.00 40.54 4.00
112 113 0.328592 GGGAAGGAGGGAGAAACACC 59.671 60.000 0.00 0.00 0.00 4.16
113 114 0.328592 GGGGAAGGAGGGAGAAACAC 59.671 60.000 0.00 0.00 0.00 3.32
114 115 1.198759 CGGGGAAGGAGGGAGAAACA 61.199 60.000 0.00 0.00 0.00 2.83
115 116 1.199425 ACGGGGAAGGAGGGAGAAAC 61.199 60.000 0.00 0.00 0.00 2.78
116 117 0.414629 TACGGGGAAGGAGGGAGAAA 59.585 55.000 0.00 0.00 0.00 2.52
117 118 0.414629 TTACGGGGAAGGAGGGAGAA 59.585 55.000 0.00 0.00 0.00 2.87
118 119 0.414629 TTTACGGGGAAGGAGGGAGA 59.585 55.000 0.00 0.00 0.00 3.71
119 120 1.282382 TTTTACGGGGAAGGAGGGAG 58.718 55.000 0.00 0.00 0.00 4.30
120 121 1.744872 TTTTTACGGGGAAGGAGGGA 58.255 50.000 0.00 0.00 0.00 4.20
137 138 6.152661 TCCAATGTGTTCACTCTTCACTTTTT 59.847 34.615 4.59 0.00 33.82 1.94
138 139 5.652014 TCCAATGTGTTCACTCTTCACTTTT 59.348 36.000 4.59 0.00 33.82 2.27
139 140 5.192927 TCCAATGTGTTCACTCTTCACTTT 58.807 37.500 4.59 0.00 33.82 2.66
140 141 4.780815 TCCAATGTGTTCACTCTTCACTT 58.219 39.130 4.59 0.00 33.82 3.16
141 142 4.422073 TCCAATGTGTTCACTCTTCACT 57.578 40.909 4.59 0.00 33.82 3.41
142 143 6.992063 ATATCCAATGTGTTCACTCTTCAC 57.008 37.500 4.59 0.00 0.00 3.18
143 144 8.408043 AAAATATCCAATGTGTTCACTCTTCA 57.592 30.769 4.59 0.00 0.00 3.02
144 145 9.132521 CAAAAATATCCAATGTGTTCACTCTTC 57.867 33.333 4.59 0.00 0.00 2.87
145 146 8.090214 CCAAAAATATCCAATGTGTTCACTCTT 58.910 33.333 4.59 0.00 0.00 2.85
146 147 7.451255 TCCAAAAATATCCAATGTGTTCACTCT 59.549 33.333 4.59 0.00 0.00 3.24
147 148 7.542130 GTCCAAAAATATCCAATGTGTTCACTC 59.458 37.037 4.59 0.00 0.00 3.51
148 149 7.015098 TGTCCAAAAATATCCAATGTGTTCACT 59.985 33.333 4.59 0.00 0.00 3.41
149 150 7.151308 TGTCCAAAAATATCCAATGTGTTCAC 58.849 34.615 0.00 0.00 0.00 3.18
150 151 7.295322 TGTCCAAAAATATCCAATGTGTTCA 57.705 32.000 0.00 0.00 0.00 3.18
151 152 7.872483 AGTTGTCCAAAAATATCCAATGTGTTC 59.128 33.333 0.00 0.00 0.00 3.18
152 153 7.656948 CAGTTGTCCAAAAATATCCAATGTGTT 59.343 33.333 0.00 0.00 0.00 3.32
153 154 7.153985 CAGTTGTCCAAAAATATCCAATGTGT 58.846 34.615 0.00 0.00 0.00 3.72
154 155 7.116662 CACAGTTGTCCAAAAATATCCAATGTG 59.883 37.037 0.00 0.00 0.00 3.21
155 156 7.015098 TCACAGTTGTCCAAAAATATCCAATGT 59.985 33.333 0.00 0.00 0.00 2.71
156 157 7.377398 TCACAGTTGTCCAAAAATATCCAATG 58.623 34.615 0.00 0.00 0.00 2.82
157 158 7.537596 TCACAGTTGTCCAAAAATATCCAAT 57.462 32.000 0.00 0.00 0.00 3.16
158 159 6.968263 TCACAGTTGTCCAAAAATATCCAA 57.032 33.333 0.00 0.00 0.00 3.53
159 160 7.309744 GGAATCACAGTTGTCCAAAAATATCCA 60.310 37.037 0.00 0.00 0.00 3.41
160 161 7.035612 GGAATCACAGTTGTCCAAAAATATCC 58.964 38.462 0.00 0.00 0.00 2.59
161 162 7.601856 TGGAATCACAGTTGTCCAAAAATATC 58.398 34.615 0.00 0.00 37.22 1.63
162 163 7.537596 TGGAATCACAGTTGTCCAAAAATAT 57.462 32.000 0.00 0.00 37.22 1.28
163 164 6.968263 TGGAATCACAGTTGTCCAAAAATA 57.032 33.333 0.00 0.00 37.22 1.40
164 165 5.867903 TGGAATCACAGTTGTCCAAAAAT 57.132 34.783 0.00 0.00 37.22 1.82
165 166 5.453057 CCATGGAATCACAGTTGTCCAAAAA 60.453 40.000 5.56 0.00 43.21 1.94
166 167 4.039004 CCATGGAATCACAGTTGTCCAAAA 59.961 41.667 5.56 0.00 43.21 2.44
167 168 3.573538 CCATGGAATCACAGTTGTCCAAA 59.426 43.478 5.56 0.00 43.21 3.28
168 169 3.156293 CCATGGAATCACAGTTGTCCAA 58.844 45.455 5.56 0.00 43.21 3.53
169 170 2.794103 CCATGGAATCACAGTTGTCCA 58.206 47.619 5.56 0.00 44.07 4.02
170 171 1.474077 GCCATGGAATCACAGTTGTCC 59.526 52.381 18.40 0.00 0.00 4.02
171 172 1.131126 CGCCATGGAATCACAGTTGTC 59.869 52.381 18.40 0.00 0.00 3.18
172 173 1.167851 CGCCATGGAATCACAGTTGT 58.832 50.000 18.40 0.00 0.00 3.32
173 174 0.452987 CCGCCATGGAATCACAGTTG 59.547 55.000 18.40 0.00 42.00 3.16
174 175 1.315257 GCCGCCATGGAATCACAGTT 61.315 55.000 18.40 0.00 42.00 3.16
175 176 1.750399 GCCGCCATGGAATCACAGT 60.750 57.895 18.40 0.00 42.00 3.55
176 177 2.827051 CGCCGCCATGGAATCACAG 61.827 63.158 18.40 0.00 42.00 3.66
177 178 2.823593 CGCCGCCATGGAATCACA 60.824 61.111 18.40 0.00 42.00 3.58
178 179 3.585990 CCGCCGCCATGGAATCAC 61.586 66.667 18.40 0.00 42.00 3.06
199 200 2.025793 TCCCTATCTCCGGCTCTATCAG 60.026 54.545 0.00 0.00 0.00 2.90
200 201 1.993301 TCCCTATCTCCGGCTCTATCA 59.007 52.381 0.00 0.00 0.00 2.15
201 202 2.371306 GTCCCTATCTCCGGCTCTATC 58.629 57.143 0.00 0.00 0.00 2.08
202 203 1.340211 CGTCCCTATCTCCGGCTCTAT 60.340 57.143 0.00 0.00 0.00 1.98
203 204 0.036448 CGTCCCTATCTCCGGCTCTA 59.964 60.000 0.00 0.00 0.00 2.43
204 205 1.228306 CGTCCCTATCTCCGGCTCT 60.228 63.158 0.00 0.00 0.00 4.09
205 206 1.228184 TCGTCCCTATCTCCGGCTC 60.228 63.158 0.00 0.00 0.00 4.70
206 207 1.528776 GTCGTCCCTATCTCCGGCT 60.529 63.158 0.00 0.00 0.00 5.52
207 208 2.562876 GGTCGTCCCTATCTCCGGC 61.563 68.421 0.00 0.00 0.00 6.13
208 209 3.760917 GGTCGTCCCTATCTCCGG 58.239 66.667 0.00 0.00 0.00 5.14
222 223 2.202756 GCAGTGATCGACCGGGTC 60.203 66.667 17.38 17.38 0.00 4.46
223 224 2.507110 CTTGCAGTGATCGACCGGGT 62.507 60.000 6.32 0.00 0.00 5.28
224 225 1.811266 CTTGCAGTGATCGACCGGG 60.811 63.158 6.32 0.00 0.00 5.73
225 226 1.811266 CCTTGCAGTGATCGACCGG 60.811 63.158 0.00 0.00 0.00 5.28
226 227 1.811266 CCCTTGCAGTGATCGACCG 60.811 63.158 0.00 0.00 0.00 4.79
227 228 2.109126 GCCCTTGCAGTGATCGACC 61.109 63.158 0.00 0.00 37.47 4.79
228 229 2.456119 CGCCCTTGCAGTGATCGAC 61.456 63.158 0.00 0.00 37.32 4.20
229 230 2.125552 CGCCCTTGCAGTGATCGA 60.126 61.111 0.00 0.00 37.32 3.59
230 231 2.125552 TCGCCCTTGCAGTGATCG 60.126 61.111 0.00 0.00 37.32 3.69
231 232 2.467826 GCTCGCCCTTGCAGTGATC 61.468 63.158 0.00 0.00 37.32 2.92
232 233 2.437359 GCTCGCCCTTGCAGTGAT 60.437 61.111 0.00 0.00 37.32 3.06
233 234 4.704833 GGCTCGCCCTTGCAGTGA 62.705 66.667 0.00 0.00 37.32 3.41
239 240 4.473520 ATGTCCGGCTCGCCCTTG 62.474 66.667 0.00 0.00 0.00 3.61
240 241 4.473520 CATGTCCGGCTCGCCCTT 62.474 66.667 0.00 0.00 0.00 3.95
243 244 4.899239 CTCCATGTCCGGCTCGCC 62.899 72.222 0.00 0.00 0.00 5.54
244 245 3.838271 TCTCCATGTCCGGCTCGC 61.838 66.667 0.00 0.00 0.00 5.03
245 246 2.105128 GTCTCCATGTCCGGCTCG 59.895 66.667 0.00 0.00 0.00 5.03
246 247 1.739338 ATCGTCTCCATGTCCGGCTC 61.739 60.000 0.00 0.00 0.00 4.70
247 248 1.758514 ATCGTCTCCATGTCCGGCT 60.759 57.895 0.00 0.00 0.00 5.52
248 249 1.592669 CATCGTCTCCATGTCCGGC 60.593 63.158 0.00 0.00 0.00 6.13
249 250 1.592669 GCATCGTCTCCATGTCCGG 60.593 63.158 0.00 0.00 0.00 5.14
250 251 1.946156 CGCATCGTCTCCATGTCCG 60.946 63.158 0.00 0.00 0.00 4.79
251 252 1.592669 CCGCATCGTCTCCATGTCC 60.593 63.158 0.00 0.00 0.00 4.02
252 253 2.240500 GCCGCATCGTCTCCATGTC 61.241 63.158 0.00 0.00 0.00 3.06
253 254 1.391933 TAGCCGCATCGTCTCCATGT 61.392 55.000 0.00 0.00 0.00 3.21
254 255 0.665670 CTAGCCGCATCGTCTCCATG 60.666 60.000 0.00 0.00 0.00 3.66
255 256 1.662608 CTAGCCGCATCGTCTCCAT 59.337 57.895 0.00 0.00 0.00 3.41
256 257 3.120105 CTAGCCGCATCGTCTCCA 58.880 61.111 0.00 0.00 0.00 3.86
257 258 2.355244 GCTAGCCGCATCGTCTCC 60.355 66.667 2.29 0.00 38.92 3.71
258 259 2.413351 TGCTAGCCGCATCGTCTC 59.587 61.111 13.29 0.00 45.47 3.36
266 267 1.016627 TTGATGTCATTGCTAGCCGC 58.983 50.000 13.29 0.00 39.77 6.53
267 268 2.938451 TCTTTGATGTCATTGCTAGCCG 59.062 45.455 13.29 0.42 0.00 5.52
268 269 3.944015 AGTCTTTGATGTCATTGCTAGCC 59.056 43.478 13.29 0.00 0.00 3.93
269 270 6.668541 TTAGTCTTTGATGTCATTGCTAGC 57.331 37.500 8.10 8.10 0.00 3.42
270 271 8.886719 TCAATTAGTCTTTGATGTCATTGCTAG 58.113 33.333 0.00 0.00 0.00 3.42
271 272 8.791327 TCAATTAGTCTTTGATGTCATTGCTA 57.209 30.769 0.00 0.00 0.00 3.49
272 273 7.692460 TCAATTAGTCTTTGATGTCATTGCT 57.308 32.000 0.00 0.00 0.00 3.91
281 282 6.125029 CCACCCTCATCAATTAGTCTTTGAT 58.875 40.000 0.00 0.00 42.95 2.57
282 283 5.500234 CCACCCTCATCAATTAGTCTTTGA 58.500 41.667 0.00 0.00 37.49 2.69
283 284 4.641989 CCCACCCTCATCAATTAGTCTTTG 59.358 45.833 0.00 0.00 0.00 2.77
284 285 4.325344 CCCCACCCTCATCAATTAGTCTTT 60.325 45.833 0.00 0.00 0.00 2.52
285 286 3.203040 CCCCACCCTCATCAATTAGTCTT 59.797 47.826 0.00 0.00 0.00 3.01
286 287 2.780010 CCCCACCCTCATCAATTAGTCT 59.220 50.000 0.00 0.00 0.00 3.24
287 288 2.749800 GCCCCACCCTCATCAATTAGTC 60.750 54.545 0.00 0.00 0.00 2.59
288 289 1.215423 GCCCCACCCTCATCAATTAGT 59.785 52.381 0.00 0.00 0.00 2.24
289 290 1.496429 AGCCCCACCCTCATCAATTAG 59.504 52.381 0.00 0.00 0.00 1.73
290 291 1.215173 CAGCCCCACCCTCATCAATTA 59.785 52.381 0.00 0.00 0.00 1.40
291 292 0.032813 CAGCCCCACCCTCATCAATT 60.033 55.000 0.00 0.00 0.00 2.32
292 293 1.616921 CAGCCCCACCCTCATCAAT 59.383 57.895 0.00 0.00 0.00 2.57
293 294 3.089838 CAGCCCCACCCTCATCAA 58.910 61.111 0.00 0.00 0.00 2.57
294 295 3.731728 GCAGCCCCACCCTCATCA 61.732 66.667 0.00 0.00 0.00 3.07
295 296 4.864334 CGCAGCCCCACCCTCATC 62.864 72.222 0.00 0.00 0.00 2.92
302 303 4.195334 ATGATCCCGCAGCCCCAC 62.195 66.667 0.00 0.00 0.00 4.61
303 304 3.877450 GATGATCCCGCAGCCCCA 61.877 66.667 0.00 0.00 0.00 4.96
304 305 4.996434 CGATGATCCCGCAGCCCC 62.996 72.222 0.00 0.00 0.00 5.80
305 306 3.873026 CTCGATGATCCCGCAGCCC 62.873 68.421 0.00 0.00 0.00 5.19
306 307 2.356793 CTCGATGATCCCGCAGCC 60.357 66.667 0.00 0.00 0.00 4.85
307 308 2.356793 CCTCGATGATCCCGCAGC 60.357 66.667 0.00 0.00 0.00 5.25
308 309 1.006805 GACCTCGATGATCCCGCAG 60.007 63.158 0.00 0.00 0.00 5.18
309 310 2.845550 CGACCTCGATGATCCCGCA 61.846 63.158 0.00 0.00 43.02 5.69
310 311 2.049985 CGACCTCGATGATCCCGC 60.050 66.667 0.00 0.00 43.02 6.13
311 312 2.645567 CCGACCTCGATGATCCCG 59.354 66.667 0.00 0.00 43.02 5.14
312 313 2.028125 TTGCCGACCTCGATGATCCC 62.028 60.000 0.00 0.00 43.02 3.85
313 314 0.179084 TTTGCCGACCTCGATGATCC 60.179 55.000 0.00 0.00 43.02 3.36
314 315 1.212616 CTTTGCCGACCTCGATGATC 58.787 55.000 0.00 0.00 43.02 2.92
315 316 0.179073 CCTTTGCCGACCTCGATGAT 60.179 55.000 0.00 0.00 43.02 2.45
316 317 1.218047 CCTTTGCCGACCTCGATGA 59.782 57.895 0.00 0.00 43.02 2.92
317 318 1.815421 CCCTTTGCCGACCTCGATG 60.815 63.158 0.00 0.00 43.02 3.84
318 319 2.584608 CCCTTTGCCGACCTCGAT 59.415 61.111 0.00 0.00 43.02 3.59
319 320 3.702048 CCCCTTTGCCGACCTCGA 61.702 66.667 0.00 0.00 43.02 4.04
320 321 4.016706 ACCCCTTTGCCGACCTCG 62.017 66.667 0.00 0.00 39.44 4.63
321 322 2.359975 CACCCCTTTGCCGACCTC 60.360 66.667 0.00 0.00 0.00 3.85
322 323 1.420532 TAACACCCCTTTGCCGACCT 61.421 55.000 0.00 0.00 0.00 3.85
323 324 0.958876 CTAACACCCCTTTGCCGACC 60.959 60.000 0.00 0.00 0.00 4.79
324 325 0.035739 TCTAACACCCCTTTGCCGAC 59.964 55.000 0.00 0.00 0.00 4.79
325 326 0.766131 TTCTAACACCCCTTTGCCGA 59.234 50.000 0.00 0.00 0.00 5.54
326 327 1.165270 CTTCTAACACCCCTTTGCCG 58.835 55.000 0.00 0.00 0.00 5.69
327 328 2.579410 TCTTCTAACACCCCTTTGCC 57.421 50.000 0.00 0.00 0.00 4.52
328 329 3.686016 TCATCTTCTAACACCCCTTTGC 58.314 45.455 0.00 0.00 0.00 3.68
329 330 5.183904 CCTTTCATCTTCTAACACCCCTTTG 59.816 44.000 0.00 0.00 0.00 2.77
330 331 5.325239 CCTTTCATCTTCTAACACCCCTTT 58.675 41.667 0.00 0.00 0.00 3.11
331 332 4.263949 CCCTTTCATCTTCTAACACCCCTT 60.264 45.833 0.00 0.00 0.00 3.95
332 333 3.267031 CCCTTTCATCTTCTAACACCCCT 59.733 47.826 0.00 0.00 0.00 4.79
333 334 3.265995 TCCCTTTCATCTTCTAACACCCC 59.734 47.826 0.00 0.00 0.00 4.95
334 335 4.262617 GTCCCTTTCATCTTCTAACACCC 58.737 47.826 0.00 0.00 0.00 4.61
335 336 3.933332 CGTCCCTTTCATCTTCTAACACC 59.067 47.826 0.00 0.00 0.00 4.16
336 337 4.626172 GTCGTCCCTTTCATCTTCTAACAC 59.374 45.833 0.00 0.00 0.00 3.32
337 338 4.282449 TGTCGTCCCTTTCATCTTCTAACA 59.718 41.667 0.00 0.00 0.00 2.41
338 339 4.626172 GTGTCGTCCCTTTCATCTTCTAAC 59.374 45.833 0.00 0.00 0.00 2.34
339 340 4.527038 AGTGTCGTCCCTTTCATCTTCTAA 59.473 41.667 0.00 0.00 0.00 2.10
340 341 4.087182 AGTGTCGTCCCTTTCATCTTCTA 58.913 43.478 0.00 0.00 0.00 2.10
341 342 2.900546 AGTGTCGTCCCTTTCATCTTCT 59.099 45.455 0.00 0.00 0.00 2.85
342 343 3.320673 AGTGTCGTCCCTTTCATCTTC 57.679 47.619 0.00 0.00 0.00 2.87
343 344 3.181454 ACAAGTGTCGTCCCTTTCATCTT 60.181 43.478 0.00 0.00 0.00 2.40
344 345 2.368875 ACAAGTGTCGTCCCTTTCATCT 59.631 45.455 0.00 0.00 0.00 2.90
345 346 2.767505 ACAAGTGTCGTCCCTTTCATC 58.232 47.619 0.00 0.00 0.00 2.92
346 347 2.930826 ACAAGTGTCGTCCCTTTCAT 57.069 45.000 0.00 0.00 0.00 2.57
347 348 2.702592 AACAAGTGTCGTCCCTTTCA 57.297 45.000 0.00 0.00 0.00 2.69
348 349 3.242969 GGAAAACAAGTGTCGTCCCTTTC 60.243 47.826 3.11 0.61 0.00 2.62
349 350 2.686405 GGAAAACAAGTGTCGTCCCTTT 59.314 45.455 3.11 0.00 0.00 3.11
350 351 2.092592 AGGAAAACAAGTGTCGTCCCTT 60.093 45.455 8.88 0.00 33.63 3.95
351 352 1.489230 AGGAAAACAAGTGTCGTCCCT 59.511 47.619 8.88 0.00 33.63 4.20
352 353 1.963172 AGGAAAACAAGTGTCGTCCC 58.037 50.000 8.88 0.00 33.63 4.46
353 354 4.365899 AAAAGGAAAACAAGTGTCGTCC 57.634 40.909 5.57 5.57 33.45 4.79
354 355 5.158494 ACAAAAAGGAAAACAAGTGTCGTC 58.842 37.500 0.00 0.00 0.00 4.20
355 356 5.128992 ACAAAAAGGAAAACAAGTGTCGT 57.871 34.783 0.00 0.00 0.00 4.34
356 357 5.404066 ACAACAAAAAGGAAAACAAGTGTCG 59.596 36.000 0.00 0.00 0.00 4.35
357 358 6.779115 ACAACAAAAAGGAAAACAAGTGTC 57.221 33.333 0.00 0.00 0.00 3.67
358 359 6.540551 ACAACAACAAAAAGGAAAACAAGTGT 59.459 30.769 0.00 0.00 0.00 3.55
359 360 6.953843 ACAACAACAAAAAGGAAAACAAGTG 58.046 32.000 0.00 0.00 0.00 3.16
360 361 7.066404 ACAACAACAACAAAAAGGAAAACAAGT 59.934 29.630 0.00 0.00 0.00 3.16
361 362 7.413644 ACAACAACAACAAAAAGGAAAACAAG 58.586 30.769 0.00 0.00 0.00 3.16
362 363 7.321745 ACAACAACAACAAAAAGGAAAACAA 57.678 28.000 0.00 0.00 0.00 2.83
363 364 6.927294 ACAACAACAACAAAAAGGAAAACA 57.073 29.167 0.00 0.00 0.00 2.83
364 365 7.190191 ACAACAACAACAACAAAAAGGAAAAC 58.810 30.769 0.00 0.00 0.00 2.43
365 366 7.321745 ACAACAACAACAACAAAAAGGAAAA 57.678 28.000 0.00 0.00 0.00 2.29
366 367 6.927294 ACAACAACAACAACAAAAAGGAAA 57.073 29.167 0.00 0.00 0.00 3.13
367 368 6.316390 ACAACAACAACAACAACAAAAAGGAA 59.684 30.769 0.00 0.00 0.00 3.36
368 369 5.817816 ACAACAACAACAACAACAAAAAGGA 59.182 32.000 0.00 0.00 0.00 3.36
369 370 6.018343 AGACAACAACAACAACAACAAAAAGG 60.018 34.615 0.00 0.00 0.00 3.11
370 371 6.942891 AGACAACAACAACAACAACAAAAAG 58.057 32.000 0.00 0.00 0.00 2.27
371 372 6.910536 AGACAACAACAACAACAACAAAAA 57.089 29.167 0.00 0.00 0.00 1.94
372 373 6.313905 ACAAGACAACAACAACAACAACAAAA 59.686 30.769 0.00 0.00 0.00 2.44
373 374 5.812642 ACAAGACAACAACAACAACAACAAA 59.187 32.000 0.00 0.00 0.00 2.83
374 375 5.352284 ACAAGACAACAACAACAACAACAA 58.648 33.333 0.00 0.00 0.00 2.83
375 376 4.938080 ACAAGACAACAACAACAACAACA 58.062 34.783 0.00 0.00 0.00 3.33
376 377 5.460419 TCAACAAGACAACAACAACAACAAC 59.540 36.000 0.00 0.00 0.00 3.32
377 378 5.592054 TCAACAAGACAACAACAACAACAA 58.408 33.333 0.00 0.00 0.00 2.83
378 379 5.009110 TCTCAACAAGACAACAACAACAACA 59.991 36.000 0.00 0.00 0.00 3.33
379 380 5.457140 TCTCAACAAGACAACAACAACAAC 58.543 37.500 0.00 0.00 0.00 3.32
380 381 5.697473 TCTCAACAAGACAACAACAACAA 57.303 34.783 0.00 0.00 0.00 2.83
381 382 5.697473 TTCTCAACAAGACAACAACAACA 57.303 34.783 0.00 0.00 32.27 3.33
382 383 6.398517 CGTTTTCTCAACAAGACAACAACAAC 60.399 38.462 5.30 0.00 42.40 3.32
383 384 5.627367 CGTTTTCTCAACAAGACAACAACAA 59.373 36.000 5.30 0.00 42.40 2.83
384 385 5.150683 CGTTTTCTCAACAAGACAACAACA 58.849 37.500 5.30 0.00 42.40 3.33
385 386 4.557301 CCGTTTTCTCAACAAGACAACAAC 59.443 41.667 5.30 0.00 42.40 3.32
386 387 4.380023 CCCGTTTTCTCAACAAGACAACAA 60.380 41.667 5.30 0.00 42.40 2.83
387 388 3.127895 CCCGTTTTCTCAACAAGACAACA 59.872 43.478 5.30 0.00 42.40 3.33
388 389 3.375922 TCCCGTTTTCTCAACAAGACAAC 59.624 43.478 0.00 0.00 40.03 3.32
389 390 3.375922 GTCCCGTTTTCTCAACAAGACAA 59.624 43.478 0.00 0.00 32.27 3.18
390 391 2.940410 GTCCCGTTTTCTCAACAAGACA 59.060 45.455 0.00 0.00 32.27 3.41
391 392 2.940410 TGTCCCGTTTTCTCAACAAGAC 59.060 45.455 0.00 0.00 32.27 3.01
392 393 3.269538 TGTCCCGTTTTCTCAACAAGA 57.730 42.857 0.00 0.00 0.00 3.02
393 394 3.127895 TGTTGTCCCGTTTTCTCAACAAG 59.872 43.478 6.57 0.00 43.02 3.16
394 395 3.082548 TGTTGTCCCGTTTTCTCAACAA 58.917 40.909 6.57 0.00 43.02 2.83
395 396 2.712709 TGTTGTCCCGTTTTCTCAACA 58.287 42.857 0.00 0.00 43.50 3.33
396 397 3.431856 GTTGTTGTCCCGTTTTCTCAAC 58.568 45.455 0.00 0.00 38.82 3.18
397 398 2.096174 CGTTGTTGTCCCGTTTTCTCAA 59.904 45.455 0.00 0.00 0.00 3.02
398 399 1.666700 CGTTGTTGTCCCGTTTTCTCA 59.333 47.619 0.00 0.00 0.00 3.27
399 400 1.003223 CCGTTGTTGTCCCGTTTTCTC 60.003 52.381 0.00 0.00 0.00 2.87
400 401 1.018910 CCGTTGTTGTCCCGTTTTCT 58.981 50.000 0.00 0.00 0.00 2.52
401 402 0.593008 GCCGTTGTTGTCCCGTTTTC 60.593 55.000 0.00 0.00 0.00 2.29
402 403 1.033202 AGCCGTTGTTGTCCCGTTTT 61.033 50.000 0.00 0.00 0.00 2.43
403 404 1.033202 AAGCCGTTGTTGTCCCGTTT 61.033 50.000 0.00 0.00 0.00 3.60
404 405 1.441732 GAAGCCGTTGTTGTCCCGTT 61.442 55.000 0.00 0.00 0.00 4.44
405 406 1.890510 GAAGCCGTTGTTGTCCCGT 60.891 57.895 0.00 0.00 0.00 5.28
406 407 2.613506 GGAAGCCGTTGTTGTCCCG 61.614 63.158 0.00 0.00 0.00 5.14
407 408 0.822121 AAGGAAGCCGTTGTTGTCCC 60.822 55.000 0.00 0.00 0.00 4.46
408 409 1.029681 AAAGGAAGCCGTTGTTGTCC 58.970 50.000 0.00 0.00 0.00 4.02
409 410 2.863401 AAAAGGAAGCCGTTGTTGTC 57.137 45.000 0.00 0.00 0.00 3.18
428 429 5.395642 GTTGTTGTCCTTTGTCTCGAAAAA 58.604 37.500 0.00 0.00 0.00 1.94
429 430 4.436317 CGTTGTTGTCCTTTGTCTCGAAAA 60.436 41.667 0.00 0.00 0.00 2.29
430 431 3.062909 CGTTGTTGTCCTTTGTCTCGAAA 59.937 43.478 0.00 0.00 0.00 3.46
431 432 2.605818 CGTTGTTGTCCTTTGTCTCGAA 59.394 45.455 0.00 0.00 0.00 3.71
432 433 2.159212 TCGTTGTTGTCCTTTGTCTCGA 60.159 45.455 0.00 0.00 0.00 4.04
433 434 2.034001 GTCGTTGTTGTCCTTTGTCTCG 60.034 50.000 0.00 0.00 0.00 4.04
434 435 2.034001 CGTCGTTGTTGTCCTTTGTCTC 60.034 50.000 0.00 0.00 0.00 3.36
435 436 1.931172 CGTCGTTGTTGTCCTTTGTCT 59.069 47.619 0.00 0.00 0.00 3.41
436 437 1.593793 GCGTCGTTGTTGTCCTTTGTC 60.594 52.381 0.00 0.00 0.00 3.18
437 438 0.375803 GCGTCGTTGTTGTCCTTTGT 59.624 50.000 0.00 0.00 0.00 2.83
438 439 0.655733 AGCGTCGTTGTTGTCCTTTG 59.344 50.000 0.00 0.00 0.00 2.77
439 440 0.655733 CAGCGTCGTTGTTGTCCTTT 59.344 50.000 0.28 0.00 0.00 3.11
440 441 0.461339 ACAGCGTCGTTGTTGTCCTT 60.461 50.000 9.09 0.00 0.00 3.36
441 442 0.461339 AACAGCGTCGTTGTTGTCCT 60.461 50.000 24.06 2.21 35.77 3.85
442 443 0.315869 CAACAGCGTCGTTGTTGTCC 60.316 55.000 33.65 0.94 45.19 4.02
443 444 3.127864 CAACAGCGTCGTTGTTGTC 57.872 52.632 33.65 1.63 45.19 3.18
446 447 2.830285 GCCCAACAGCGTCGTTGTT 61.830 57.895 20.05 20.05 43.89 2.83
447 448 3.276846 GCCCAACAGCGTCGTTGT 61.277 61.111 9.09 9.09 43.89 3.32
448 449 2.954753 GAGCCCAACAGCGTCGTTG 61.955 63.158 7.60 7.60 44.78 4.10
449 450 2.660258 AAGAGCCCAACAGCGTCGTT 62.660 55.000 0.00 0.00 38.01 3.85
450 451 3.165160 AAGAGCCCAACAGCGTCGT 62.165 57.895 0.00 0.00 38.01 4.34
451 452 2.357517 AAGAGCCCAACAGCGTCG 60.358 61.111 0.00 0.00 38.01 5.12
452 453 2.328099 CCAAGAGCCCAACAGCGTC 61.328 63.158 0.00 0.00 38.01 5.19
453 454 2.281761 CCAAGAGCCCAACAGCGT 60.282 61.111 0.00 0.00 38.01 5.07
454 455 3.058160 CCCAAGAGCCCAACAGCG 61.058 66.667 0.00 0.00 38.01 5.18
455 456 3.376918 GCCCAAGAGCCCAACAGC 61.377 66.667 0.00 0.00 0.00 4.40
463 464 0.328258 TGGTCTAAAGGCCCAAGAGC 59.672 55.000 17.50 17.50 38.06 4.09
464 465 2.422093 GGATGGTCTAAAGGCCCAAGAG 60.422 54.545 0.00 0.00 0.00 2.85
465 466 1.564348 GGATGGTCTAAAGGCCCAAGA 59.436 52.381 0.00 0.00 0.00 3.02
466 467 1.747206 CGGATGGTCTAAAGGCCCAAG 60.747 57.143 0.00 0.00 0.00 3.61
467 468 0.254747 CGGATGGTCTAAAGGCCCAA 59.745 55.000 0.00 0.00 0.00 4.12
468 469 0.912487 ACGGATGGTCTAAAGGCCCA 60.912 55.000 0.00 0.00 0.00 5.36
469 470 0.463833 CACGGATGGTCTAAAGGCCC 60.464 60.000 0.00 0.00 0.00 5.80
470 471 1.095807 GCACGGATGGTCTAAAGGCC 61.096 60.000 0.00 0.00 0.00 5.19
471 472 1.095807 GGCACGGATGGTCTAAAGGC 61.096 60.000 0.00 0.00 0.00 4.35
472 473 3.080647 GGCACGGATGGTCTAAAGG 57.919 57.895 0.00 0.00 0.00 3.11
486 487 3.723348 GCAACGGAGGAACGGCAC 61.723 66.667 0.00 0.00 38.39 5.01
487 488 4.243008 TGCAACGGAGGAACGGCA 62.243 61.111 0.00 0.00 38.39 5.69
488 489 3.423154 CTGCAACGGAGGAACGGC 61.423 66.667 0.00 0.00 38.39 5.68
489 490 2.742372 CCTGCAACGGAGGAACGG 60.742 66.667 0.00 0.00 38.39 4.44
499 500 6.828273 TCACCATTATATATATGGCCTGCAAC 59.172 38.462 3.32 0.00 38.99 4.17
501 502 6.573712 TCACCATTATATATATGGCCTGCA 57.426 37.500 3.32 0.00 38.99 4.41
502 503 6.656693 GGATCACCATTATATATATGGCCTGC 59.343 42.308 3.32 8.74 38.99 4.85
556 561 0.983378 CCCGATCCCCTTTCCTCTGT 60.983 60.000 0.00 0.00 0.00 3.41
557 567 0.691078 TCCCGATCCCCTTTCCTCTG 60.691 60.000 0.00 0.00 0.00 3.35
636 646 4.070552 GGCCTCCGACAGAAGCGT 62.071 66.667 0.00 0.00 32.21 5.07
639 649 1.595993 TTCGAGGCCTCCGACAGAAG 61.596 60.000 27.20 10.36 35.61 2.85
640 650 0.970937 ATTCGAGGCCTCCGACAGAA 60.971 55.000 27.20 22.30 35.61 3.02
641 651 1.379977 ATTCGAGGCCTCCGACAGA 60.380 57.895 27.20 14.92 35.61 3.41
642 652 1.227089 CATTCGAGGCCTCCGACAG 60.227 63.158 27.20 12.65 35.61 3.51
643 653 1.667154 CTCATTCGAGGCCTCCGACA 61.667 60.000 27.20 16.27 35.61 4.35
644 654 1.066587 CTCATTCGAGGCCTCCGAC 59.933 63.158 27.20 2.70 35.61 4.79
681 691 2.359900 CTGCTTATTTGGTCGCCTCTT 58.640 47.619 0.00 0.00 0.00 2.85
689 699 0.033109 GGGGGAGCTGCTTATTTGGT 60.033 55.000 2.53 0.00 0.00 3.67
725 736 1.003476 TGCTGCTGCTTCGATTGGA 60.003 52.632 17.00 0.00 40.48 3.53
822 866 3.064545 GCTTTGAATCCGGATTGAGACTG 59.935 47.826 33.84 17.95 0.00 3.51
827 871 3.009723 GACTGCTTTGAATCCGGATTGA 58.990 45.455 33.84 23.82 0.00 2.57
853 898 3.306225 GCCTGTTTCTGATTGCAATCCAA 60.306 43.478 31.35 22.27 37.94 3.53
860 905 0.529378 CAGGGCCTGTTTCTGATTGC 59.471 55.000 25.74 0.00 0.00 3.56
913 958 1.819753 ATATAGCTGCTGGGTTCCCA 58.180 50.000 13.43 10.37 34.56 4.37
971 1022 3.265791 CAAGAATTGGTCTCCTCGGAAG 58.734 50.000 0.00 0.00 43.94 3.46
998 1049 0.601311 GCTGAAGGCTCACGAGTTGT 60.601 55.000 0.00 0.00 38.06 3.32
1019 1071 0.671251 TTGGTCACCGTGAATTTGGC 59.329 50.000 1.88 0.00 0.00 4.52
1069 1132 1.379044 GAACTCACCCCCATGGCTG 60.379 63.158 6.09 1.14 37.83 4.85
1141 1276 5.106987 GGATGCAAATTTTGACGCAGAATTT 60.107 36.000 13.26 12.16 38.22 1.82
1148 1283 3.989817 AGAAAGGATGCAAATTTTGACGC 59.010 39.130 13.26 0.00 0.00 5.19
1149 1284 7.756722 AGATAAGAAAGGATGCAAATTTTGACG 59.243 33.333 13.26 0.00 0.00 4.35
1197 1332 2.135664 AACGACTGGTCTCGAAGTTG 57.864 50.000 0.00 1.40 37.11 3.16
1200 1335 3.826236 TTCTAACGACTGGTCTCGAAG 57.174 47.619 0.00 0.00 37.11 3.79
1201 1336 4.216902 TGATTTCTAACGACTGGTCTCGAA 59.783 41.667 0.00 0.00 37.11 3.71
1203 1338 4.092771 TGATTTCTAACGACTGGTCTCG 57.907 45.455 0.00 0.00 39.68 4.04
1265 1592 0.603569 ACTTGCTCAACCGATCGTCT 59.396 50.000 15.09 0.00 0.00 4.18
1268 1595 0.179215 GCAACTTGCTCAACCGATCG 60.179 55.000 8.51 8.51 40.96 3.69
1275 1602 0.250684 TCATCGGGCAACTTGCTCAA 60.251 50.000 14.09 0.00 46.28 3.02
1313 1640 0.953471 CGACAATTCCAAGCCGGTCA 60.953 55.000 1.90 0.00 35.57 4.02
1335 1662 0.326264 AGGAAGCTGGTTCTTGCGAT 59.674 50.000 17.95 0.00 39.08 4.58
1400 1727 2.938838 TGAAAGGAACCAACCACGATT 58.061 42.857 0.00 0.00 0.00 3.34
1421 1748 2.759985 GGACCTGTCTTGTCCCAGA 58.240 57.895 0.00 0.00 45.38 3.86
1426 1753 1.202486 TCACGTTGGACCTGTCTTGTC 60.202 52.381 0.00 0.00 0.00 3.18
1461 1788 0.889186 GTGGTGGAACTGGCACGAAT 60.889 55.000 0.00 0.00 36.74 3.34
1484 1811 6.896021 TCCAGTATCCTCCTAGTTATTTCG 57.104 41.667 0.00 0.00 0.00 3.46
1488 1815 7.071321 CCTGTTTTCCAGTATCCTCCTAGTTAT 59.929 40.741 0.00 0.00 39.74 1.89
1489 1816 6.383147 CCTGTTTTCCAGTATCCTCCTAGTTA 59.617 42.308 0.00 0.00 39.74 2.24
1511 1838 2.039879 GGTGTATATACTTGGGGGCCTG 59.960 54.545 13.89 0.00 0.00 4.85
1524 1851 4.202223 GGACAGTCGGTGAATGGTGTATAT 60.202 45.833 0.00 0.00 31.53 0.86
1540 1867 4.437390 CCAAGAATAATTGCACGGACAGTC 60.437 45.833 0.00 0.00 0.00 3.51
1541 1868 3.440173 CCAAGAATAATTGCACGGACAGT 59.560 43.478 0.00 0.00 0.00 3.55
1640 1967 3.442273 TGCCATCCTTGTCCGTTAAAATC 59.558 43.478 0.00 0.00 0.00 2.17
1650 1977 1.135721 GCATTTCCTGCCATCCTTGTC 59.864 52.381 0.00 0.00 45.66 3.18
1683 2010 2.512896 CCTCCCATAGGCAGCCAC 59.487 66.667 15.80 0.00 38.97 5.01
1691 2018 1.053264 ACCTGAGCTGCCTCCCATAG 61.053 60.000 0.00 0.00 37.29 2.23
1736 2063 3.030652 CGTGTGAGGCCACCAAAC 58.969 61.111 5.01 6.98 42.53 2.93
1811 2138 2.839228 AGGAACTCCAGCCTCTTACAT 58.161 47.619 0.00 0.00 38.89 2.29
1883 2210 1.768275 TCAAGTTGGCTGAGTTGAGGA 59.232 47.619 2.34 0.00 34.83 3.71
1927 2254 3.705051 AGCCATTTCAGATCAACACCAT 58.295 40.909 0.00 0.00 0.00 3.55
1983 2310 1.938585 AACGGATCCTCCTGTGAGAA 58.061 50.000 10.75 0.00 41.42 2.87
2000 2327 0.943835 GGGCATGACCAACGCAAAAC 60.944 55.000 14.59 0.00 42.05 2.43
2063 2390 4.756642 TCACTTAACTTGAGCATCTTGTGG 59.243 41.667 0.00 0.00 34.92 4.17
2178 2505 6.309712 AGACATCTTGACAACATGAACAAG 57.690 37.500 10.05 9.26 37.01 3.16
2192 2519 6.272318 TGTTTGGCAAACTTAAGACATCTTG 58.728 36.000 35.03 5.73 41.90 3.02
2194 2521 6.655078 ATGTTTGGCAAACTTAAGACATCT 57.345 33.333 35.03 5.62 41.90 2.90
2195 2522 8.863049 CAATATGTTTGGCAAACTTAAGACATC 58.137 33.333 35.03 12.55 41.90 3.06
2196 2523 8.367156 ACAATATGTTTGGCAAACTTAAGACAT 58.633 29.630 35.03 24.32 41.90 3.06
2198 2525 7.651704 ACACAATATGTTTGGCAAACTTAAGAC 59.348 33.333 35.03 15.33 38.98 3.01
2219 2546 3.366883 GCACAAGGTGAAGACAAACACAA 60.367 43.478 0.00 0.00 38.57 3.33
2221 2548 2.163412 TGCACAAGGTGAAGACAAACAC 59.837 45.455 0.00 0.00 35.23 3.32
2222 2549 2.423185 CTGCACAAGGTGAAGACAAACA 59.577 45.455 0.00 0.00 41.52 2.83
2223 2550 2.682856 TCTGCACAAGGTGAAGACAAAC 59.317 45.455 2.90 0.00 42.67 2.93
2224 2551 2.997980 TCTGCACAAGGTGAAGACAAA 58.002 42.857 2.90 0.00 42.67 2.83
2234 2563 5.170748 GGTTTAATCCAAATCTGCACAAGG 58.829 41.667 0.00 0.00 0.00 3.61
2238 2567 5.643379 TCTGGTTTAATCCAAATCTGCAC 57.357 39.130 6.71 0.00 37.01 4.57
2417 2746 5.125417 TGCAACTTTAACAAGAGCTTTGACT 59.875 36.000 13.35 5.13 36.31 3.41
2419 2748 5.574891 TGCAACTTTAACAAGAGCTTTGA 57.425 34.783 13.35 0.00 36.31 2.69
2455 2784 6.778834 ATGTGCATCATATTTGAAACAGGA 57.221 33.333 0.00 0.00 34.96 3.86
2463 2792 9.338291 GCATCTAAACTATGTGCATCATATTTG 57.662 33.333 8.72 4.66 38.21 2.32
2493 2822 3.571401 AGAAAGAAACTTGGGCAGACATG 59.429 43.478 0.00 0.00 0.00 3.21
2494 2823 3.837355 AGAAAGAAACTTGGGCAGACAT 58.163 40.909 0.00 0.00 0.00 3.06
2497 2826 3.631250 ACAAGAAAGAAACTTGGGCAGA 58.369 40.909 0.00 0.00 45.92 4.26
2499 2828 4.707448 TGTTACAAGAAAGAAACTTGGGCA 59.293 37.500 0.00 0.00 45.92 5.36
2510 2839 7.167468 GCATTACACAAGGTTGTTACAAGAAAG 59.833 37.037 0.00 0.00 39.91 2.62
2521 2850 5.643379 AACCATAGCATTACACAAGGTTG 57.357 39.130 0.00 0.00 36.80 3.77
2536 2865 4.550076 TTCCATTGGGCAAAAACCATAG 57.450 40.909 2.09 0.00 37.93 2.23
2571 2900 5.292834 GTCTCCCATCATATCGCATACATTG 59.707 44.000 0.00 0.00 0.00 2.82
2589 2918 0.256464 TCCTCTCTTCCTCGTCTCCC 59.744 60.000 0.00 0.00 0.00 4.30
2590 2919 2.021457 CTTCCTCTCTTCCTCGTCTCC 58.979 57.143 0.00 0.00 0.00 3.71
2595 2924 1.821753 TGCTTCTTCCTCTCTTCCTCG 59.178 52.381 0.00 0.00 0.00 4.63
2619 2948 2.696187 GTCCTTCCTCTCCTCGCTAAAT 59.304 50.000 0.00 0.00 0.00 1.40
2647 2976 1.484444 GCCAGTCCTTCCCACTCTGT 61.484 60.000 0.00 0.00 0.00 3.41
2862 3191 1.924731 TCCTCACCGACATCTTCTGT 58.075 50.000 0.00 0.00 42.15 3.41
2934 3263 4.687215 TGCAGCACCTCGGCACTC 62.687 66.667 0.00 0.00 40.89 3.51
2952 3281 1.963515 ACCAACAACAAGCTTCATCCC 59.036 47.619 0.00 0.00 0.00 3.85
2957 3286 1.659211 CGCGTACCAACAACAAGCTTC 60.659 52.381 0.00 0.00 0.00 3.86
3010 3339 3.877559 TGATTATTGCAGTGACCTCAGG 58.122 45.455 0.00 0.00 0.00 3.86
3490 4081 7.013464 ACAGTATCGTTCTTTATACTCCCTCTG 59.987 40.741 0.00 0.00 36.91 3.35
3508 4099 5.966636 TGTGCAAGCTAATAACAGTATCG 57.033 39.130 0.00 0.00 0.00 2.92
3511 4102 9.834628 GTTTTTATGTGCAAGCTAATAACAGTA 57.165 29.630 0.00 0.00 0.00 2.74
3512 4103 7.537306 CGTTTTTATGTGCAAGCTAATAACAGT 59.463 33.333 0.00 0.00 0.00 3.55
3513 4104 7.748683 TCGTTTTTATGTGCAAGCTAATAACAG 59.251 33.333 0.00 0.00 0.00 3.16
3514 4105 7.585867 TCGTTTTTATGTGCAAGCTAATAACA 58.414 30.769 0.00 0.00 0.00 2.41
3515 4106 8.614994 ATCGTTTTTATGTGCAAGCTAATAAC 57.385 30.769 0.00 0.00 0.00 1.89
3646 6378 7.987750 TGGTTGACATAATAACACTAGCAAA 57.012 32.000 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.