Multiple sequence alignment - TraesCS6B01G450700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G450700 chr6B 100.000 6407 0 0 1 6407 709537647 709531241 0.000000e+00 11832.0
1 TraesCS6B01G450700 chr6B 86.026 229 13 8 888 1106 687536258 687536039 1.800000e-55 228.0
2 TraesCS6B01G450700 chr6D 94.474 4995 212 28 1443 6400 465068593 465073560 0.000000e+00 7637.0
3 TraesCS6B01G450700 chr6D 97.353 529 13 1 3508 4035 463925483 463924955 0.000000e+00 898.0
4 TraesCS6B01G450700 chr6D 89.210 519 26 8 714 1221 465067800 465068299 7.060000e-174 621.0
5 TraesCS6B01G450700 chr6D 96.646 328 10 1 3508 3834 80918571 80918244 1.570000e-150 544.0
6 TraesCS6B01G450700 chr6A 90.876 4910 325 67 1557 6405 611709822 611714669 0.000000e+00 6471.0
7 TraesCS6B01G450700 chr6A 82.921 445 18 14 788 1221 611709087 611709484 1.320000e-91 348.0
8 TraesCS6B01G450700 chr5B 97.436 585 15 0 1 585 10551690 10552274 0.000000e+00 998.0
9 TraesCS6B01G450700 chr5B 97.124 591 17 0 1 591 447220585 447221175 0.000000e+00 998.0
10 TraesCS6B01G450700 chr7D 97.164 529 14 1 3508 4035 101194034 101193506 0.000000e+00 893.0
11 TraesCS6B01G450700 chr7D 96.975 529 15 1 3508 4035 302872119 302871591 0.000000e+00 887.0
12 TraesCS6B01G450700 chr7D 81.688 557 102 0 30 586 85032190 85031634 1.260000e-126 464.0
13 TraesCS6B01G450700 chr2B 90.427 585 54 2 2 585 283259332 283258749 0.000000e+00 769.0
14 TraesCS6B01G450700 chr2B 81.772 587 104 3 1 585 581698414 581698999 7.470000e-134 488.0
15 TraesCS6B01G450700 chr3A 89.932 586 57 2 1 585 113995408 113995992 0.000000e+00 754.0
16 TraesCS6B01G450700 chr3A 86.087 230 12 7 888 1106 22148752 22148532 5.000000e-56 230.0
17 TraesCS6B01G450700 chr3B 85.185 594 78 7 2 587 512861525 512860934 9.190000e-168 601.0
18 TraesCS6B01G450700 chr3B 93.023 43 2 1 2706 2747 116117738 116117696 1.930000e-05 62.1
19 TraesCS6B01G450700 chr3D 96.646 328 10 1 3508 3834 529394663 529394336 1.570000e-150 544.0
20 TraesCS6B01G450700 chr3D 83.523 528 86 1 61 588 5127582 5128108 5.770000e-135 492.0
21 TraesCS6B01G450700 chr1D 96.037 328 12 1 3508 3834 486539027 486538700 3.400000e-147 532.0
22 TraesCS6B01G450700 chr1D 96.037 328 12 1 3508 3834 488234715 488234388 3.400000e-147 532.0
23 TraesCS6B01G450700 chr7B 81.494 589 104 2 1 585 38683176 38683763 4.490000e-131 479.0
24 TraesCS6B01G450700 chr2D 98.286 175 3 0 3870 4044 2921613 2921439 2.240000e-79 307.0
25 TraesCS6B01G450700 chr1B 86.207 261 16 8 888 1137 621998968 621998717 1.370000e-66 265.0
26 TraesCS6B01G450700 chr1B 86.087 230 12 7 888 1106 118403281 118403501 5.000000e-56 230.0
27 TraesCS6B01G450700 chr4B 86.087 230 12 7 888 1106 640475111 640475331 5.000000e-56 230.0
28 TraesCS6B01G450700 chr4B 90.476 42 3 1 2706 2746 536101890 536101931 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G450700 chr6B 709531241 709537647 6406 True 11832.0 11832 100.0000 1 6407 1 chr6B.!!$R2 6406
1 TraesCS6B01G450700 chr6D 465067800 465073560 5760 False 4129.0 7637 91.8420 714 6400 2 chr6D.!!$F1 5686
2 TraesCS6B01G450700 chr6D 463924955 463925483 528 True 898.0 898 97.3530 3508 4035 1 chr6D.!!$R2 527
3 TraesCS6B01G450700 chr6A 611709087 611714669 5582 False 3409.5 6471 86.8985 788 6405 2 chr6A.!!$F1 5617
4 TraesCS6B01G450700 chr5B 10551690 10552274 584 False 998.0 998 97.4360 1 585 1 chr5B.!!$F1 584
5 TraesCS6B01G450700 chr5B 447220585 447221175 590 False 998.0 998 97.1240 1 591 1 chr5B.!!$F2 590
6 TraesCS6B01G450700 chr7D 101193506 101194034 528 True 893.0 893 97.1640 3508 4035 1 chr7D.!!$R2 527
7 TraesCS6B01G450700 chr7D 302871591 302872119 528 True 887.0 887 96.9750 3508 4035 1 chr7D.!!$R3 527
8 TraesCS6B01G450700 chr7D 85031634 85032190 556 True 464.0 464 81.6880 30 586 1 chr7D.!!$R1 556
9 TraesCS6B01G450700 chr2B 283258749 283259332 583 True 769.0 769 90.4270 2 585 1 chr2B.!!$R1 583
10 TraesCS6B01G450700 chr2B 581698414 581698999 585 False 488.0 488 81.7720 1 585 1 chr2B.!!$F1 584
11 TraesCS6B01G450700 chr3A 113995408 113995992 584 False 754.0 754 89.9320 1 585 1 chr3A.!!$F1 584
12 TraesCS6B01G450700 chr3B 512860934 512861525 591 True 601.0 601 85.1850 2 587 1 chr3B.!!$R2 585
13 TraesCS6B01G450700 chr3D 5127582 5128108 526 False 492.0 492 83.5230 61 588 1 chr3D.!!$F1 527
14 TraesCS6B01G450700 chr7B 38683176 38683763 587 False 479.0 479 81.4940 1 585 1 chr7B.!!$F1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1008 0.038709 GATCTCGATTCCTGCCGGAG 60.039 60.000 5.05 0.0 41.25 4.63 F
1533 1640 0.036388 TGCCGATCCAGTGTTCCTTC 60.036 55.000 0.00 0.0 0.00 3.46 F
1812 1927 0.319211 CGTCCAAGTGGTCAGCGTTA 60.319 55.000 0.00 0.0 36.34 3.18 F
2031 2146 0.966920 TTCAGGTCGAGTGGAGGAAC 59.033 55.000 0.00 0.0 0.00 3.62 F
2586 2715 1.693606 CCAGTTTCCATTGCCTTTGGT 59.306 47.619 0.00 0.0 35.64 3.67 F
3015 3152 1.909302 TGTTCTGAATCCTCCCTCCAC 59.091 52.381 0.00 0.0 0.00 4.02 F
4463 4602 2.815503 TGTTGTCATGCCATTGTCTCTG 59.184 45.455 0.00 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 2245 0.539438 ACCCGGAATTTGCTGCTCAA 60.539 50.000 0.73 0.00 0.00 3.02 R
2586 2715 0.950555 CGCTACACAGAGCTGCCAAA 60.951 55.000 0.00 0.00 40.51 3.28 R
2710 2847 1.748122 AGGAGCGCTGCCTTTCATG 60.748 57.895 26.33 0.00 29.44 3.07 R
3015 3152 2.503061 CCACCTCGAGCCATCTGG 59.497 66.667 6.99 2.09 38.53 3.86 R
4279 4418 3.278574 TGTGGTTGAACAAAGAGTGAGG 58.721 45.455 0.00 0.00 0.00 3.86 R
4808 4957 3.062504 GCATCAATTTCGGCAACCATTTC 59.937 43.478 0.00 0.00 0.00 2.17 R
6360 6559 0.179163 GCAATGTCTAAACAGGCCGC 60.179 55.000 0.00 0.00 39.20 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 84 8.058847 TGTTGCCTAGATGGATAAAACCTAATT 58.941 33.333 0.00 0.00 38.35 1.40
110 112 2.875933 GGACAAAACTGAACACGGATGA 59.124 45.455 0.00 0.00 0.00 2.92
609 620 5.584551 AAAACCCAAGTAAGAGTCATCCT 57.415 39.130 0.00 0.00 0.00 3.24
610 621 5.584551 AAACCCAAGTAAGAGTCATCCTT 57.415 39.130 0.00 0.00 0.00 3.36
611 622 4.559862 ACCCAAGTAAGAGTCATCCTTG 57.440 45.455 8.09 8.09 33.88 3.61
612 623 3.910627 ACCCAAGTAAGAGTCATCCTTGT 59.089 43.478 12.05 0.00 32.56 3.16
613 624 4.256920 CCCAAGTAAGAGTCATCCTTGTG 58.743 47.826 12.05 1.38 32.56 3.33
614 625 3.686726 CCAAGTAAGAGTCATCCTTGTGC 59.313 47.826 12.05 0.00 32.56 4.57
615 626 4.564406 CCAAGTAAGAGTCATCCTTGTGCT 60.564 45.833 12.05 0.00 32.56 4.40
616 627 4.199432 AGTAAGAGTCATCCTTGTGCTG 57.801 45.455 0.00 0.00 0.00 4.41
617 628 1.818642 AAGAGTCATCCTTGTGCTGC 58.181 50.000 0.00 0.00 0.00 5.25
618 629 0.689055 AGAGTCATCCTTGTGCTGCA 59.311 50.000 0.00 0.00 0.00 4.41
619 630 1.072806 AGAGTCATCCTTGTGCTGCAA 59.927 47.619 2.77 0.00 35.50 4.08
620 631 1.881973 GAGTCATCCTTGTGCTGCAAA 59.118 47.619 2.77 0.00 36.53 3.68
621 632 1.884579 AGTCATCCTTGTGCTGCAAAG 59.115 47.619 2.77 10.35 36.53 2.77
622 633 1.881973 GTCATCCTTGTGCTGCAAAGA 59.118 47.619 19.25 9.40 36.53 2.52
623 634 1.881973 TCATCCTTGTGCTGCAAAGAC 59.118 47.619 19.25 4.11 36.53 3.01
624 635 1.884579 CATCCTTGTGCTGCAAAGACT 59.115 47.619 19.25 8.49 36.53 3.24
625 636 1.597742 TCCTTGTGCTGCAAAGACTC 58.402 50.000 19.25 3.17 36.53 3.36
626 637 0.236711 CCTTGTGCTGCAAAGACTCG 59.763 55.000 19.25 5.65 36.53 4.18
627 638 0.236711 CTTGTGCTGCAAAGACTCGG 59.763 55.000 2.77 0.00 36.53 4.63
628 639 0.463654 TTGTGCTGCAAAGACTCGGT 60.464 50.000 2.77 0.00 33.53 4.69
629 640 0.391228 TGTGCTGCAAAGACTCGGTA 59.609 50.000 2.77 0.00 0.00 4.02
630 641 1.001974 TGTGCTGCAAAGACTCGGTAT 59.998 47.619 2.77 0.00 0.00 2.73
631 642 2.076863 GTGCTGCAAAGACTCGGTATT 58.923 47.619 2.77 0.00 0.00 1.89
632 643 2.076100 TGCTGCAAAGACTCGGTATTG 58.924 47.619 0.00 0.00 0.00 1.90
633 644 1.398390 GCTGCAAAGACTCGGTATTGG 59.602 52.381 0.00 0.00 0.00 3.16
634 645 2.009774 CTGCAAAGACTCGGTATTGGG 58.990 52.381 0.00 0.00 0.00 4.12
635 646 1.626321 TGCAAAGACTCGGTATTGGGA 59.374 47.619 0.00 0.00 0.00 4.37
636 647 2.280628 GCAAAGACTCGGTATTGGGAG 58.719 52.381 0.00 0.00 36.36 4.30
637 648 2.093658 GCAAAGACTCGGTATTGGGAGA 60.094 50.000 0.00 0.00 34.40 3.71
638 649 3.786635 CAAAGACTCGGTATTGGGAGAG 58.213 50.000 0.00 0.00 36.83 3.20
639 650 2.074729 AGACTCGGTATTGGGAGAGG 57.925 55.000 0.00 0.00 35.22 3.69
640 651 0.389757 GACTCGGTATTGGGAGAGGC 59.610 60.000 0.00 0.00 35.22 4.70
641 652 1.364171 CTCGGTATTGGGAGAGGCG 59.636 63.158 0.00 0.00 31.90 5.52
642 653 2.280186 CGGTATTGGGAGAGGCGC 60.280 66.667 0.00 0.00 0.00 6.53
643 654 2.111251 GGTATTGGGAGAGGCGCC 59.889 66.667 21.89 21.89 0.00 6.53
644 655 2.444256 GGTATTGGGAGAGGCGCCT 61.444 63.158 33.48 33.48 0.00 5.52
645 656 1.527370 GTATTGGGAGAGGCGCCTT 59.473 57.895 33.34 20.53 0.00 4.35
646 657 0.107165 GTATTGGGAGAGGCGCCTTT 60.107 55.000 33.34 27.35 0.00 3.11
647 658 0.107214 TATTGGGAGAGGCGCCTTTG 60.107 55.000 33.34 0.00 0.00 2.77
648 659 1.852157 ATTGGGAGAGGCGCCTTTGA 61.852 55.000 33.34 14.03 0.00 2.69
649 660 1.852157 TTGGGAGAGGCGCCTTTGAT 61.852 55.000 33.34 17.35 0.00 2.57
650 661 1.821332 GGGAGAGGCGCCTTTGATG 60.821 63.158 33.34 0.00 0.00 3.07
651 662 2.476320 GGAGAGGCGCCTTTGATGC 61.476 63.158 33.34 17.04 0.00 3.91
657 668 2.126888 CGCCTTTGATGCGCGTTT 60.127 55.556 8.43 0.00 46.01 3.60
658 669 1.133664 CGCCTTTGATGCGCGTTTA 59.866 52.632 8.43 0.00 46.01 2.01
659 670 1.125847 CGCCTTTGATGCGCGTTTAC 61.126 55.000 8.43 0.00 46.01 2.01
660 671 1.125847 GCCTTTGATGCGCGTTTACG 61.126 55.000 8.43 0.00 43.27 3.18
670 681 2.992313 CGTTTACGCATCGGACGG 59.008 61.111 0.00 0.00 31.95 4.79
671 682 1.514657 CGTTTACGCATCGGACGGA 60.515 57.895 0.00 0.00 31.95 4.69
672 683 1.072116 CGTTTACGCATCGGACGGAA 61.072 55.000 0.00 0.00 31.95 4.30
673 684 1.283736 GTTTACGCATCGGACGGAAT 58.716 50.000 0.00 0.00 32.44 3.01
674 685 2.462889 GTTTACGCATCGGACGGAATA 58.537 47.619 0.00 0.00 32.44 1.75
675 686 3.054878 GTTTACGCATCGGACGGAATAT 58.945 45.455 0.00 0.00 32.44 1.28
676 687 2.341318 TACGCATCGGACGGAATATG 57.659 50.000 0.00 0.00 34.00 1.78
677 688 0.944311 ACGCATCGGACGGAATATGC 60.944 55.000 6.16 6.16 41.00 3.14
678 689 1.626654 CGCATCGGACGGAATATGCC 61.627 60.000 9.51 0.00 41.29 4.40
679 690 0.320771 GCATCGGACGGAATATGCCT 60.321 55.000 0.00 0.00 39.01 4.75
680 691 1.067142 GCATCGGACGGAATATGCCTA 60.067 52.381 0.00 0.00 39.01 3.93
681 692 2.607187 CATCGGACGGAATATGCCTAC 58.393 52.381 0.00 0.00 0.00 3.18
682 693 0.594602 TCGGACGGAATATGCCTACG 59.405 55.000 0.00 0.00 0.00 3.51
683 694 1.007336 CGGACGGAATATGCCTACGC 61.007 60.000 0.00 0.00 0.00 4.42
684 695 0.669625 GGACGGAATATGCCTACGCC 60.670 60.000 0.00 0.00 0.00 5.68
685 696 0.317479 GACGGAATATGCCTACGCCT 59.683 55.000 0.00 0.00 0.00 5.52
686 697 0.756903 ACGGAATATGCCTACGCCTT 59.243 50.000 0.00 0.00 0.00 4.35
687 698 1.270147 ACGGAATATGCCTACGCCTTC 60.270 52.381 0.00 0.00 0.00 3.46
688 699 1.429463 GGAATATGCCTACGCCTTCG 58.571 55.000 0.00 0.00 42.43 3.79
689 700 0.790814 GAATATGCCTACGCCTTCGC 59.209 55.000 0.00 0.00 39.84 4.70
690 701 0.393077 AATATGCCTACGCCTTCGCT 59.607 50.000 0.00 0.00 39.84 4.93
691 702 0.393077 ATATGCCTACGCCTTCGCTT 59.607 50.000 0.00 0.00 39.84 4.68
692 703 0.177141 TATGCCTACGCCTTCGCTTT 59.823 50.000 0.00 0.00 39.84 3.51
693 704 0.676782 ATGCCTACGCCTTCGCTTTT 60.677 50.000 0.00 0.00 39.84 2.27
694 705 0.887387 TGCCTACGCCTTCGCTTTTT 60.887 50.000 0.00 0.00 39.84 1.94
728 739 2.369870 CGAAATACGCCTTCGCTGT 58.630 52.632 1.85 0.00 39.22 4.40
729 740 0.719465 CGAAATACGCCTTCGCTGTT 59.281 50.000 1.85 0.00 39.22 3.16
763 784 4.926238 ACATGCGTCTCTTGTAAGAAGAAG 59.074 41.667 0.00 0.88 34.03 2.85
775 796 0.969894 AGAAGAAGGGACGTGACAGG 59.030 55.000 0.00 0.00 0.00 4.00
829 850 3.314331 CCACCACCGCTCCACTCT 61.314 66.667 0.00 0.00 0.00 3.24
832 853 2.681778 CCACCGCTCCACTCTCCT 60.682 66.667 0.00 0.00 0.00 3.69
842 863 4.316823 ACTCTCCTCCCCGGCACA 62.317 66.667 0.00 0.00 0.00 4.57
851 872 2.203015 CCCGGCACACCCTAATCG 60.203 66.667 0.00 0.00 0.00 3.34
855 876 1.024579 CGGCACACCCTAATCGCTTT 61.025 55.000 0.00 0.00 0.00 3.51
856 877 0.733150 GGCACACCCTAATCGCTTTC 59.267 55.000 0.00 0.00 0.00 2.62
890 911 3.187699 CTCCAGATCCGACGAGCCG 62.188 68.421 0.00 0.00 0.00 5.52
891 912 3.209812 CCAGATCCGACGAGCCGA 61.210 66.667 0.00 0.00 0.00 5.54
894 915 3.515286 GATCCGACGAGCCGACCA 61.515 66.667 0.00 0.00 0.00 4.02
978 999 1.726322 CGACCCGCGATCTCGATTC 60.726 63.158 8.23 1.48 44.57 2.52
979 1000 1.371881 GACCCGCGATCTCGATTCC 60.372 63.158 8.23 0.00 43.02 3.01
980 1001 1.797211 GACCCGCGATCTCGATTCCT 61.797 60.000 8.23 0.00 43.02 3.36
981 1002 1.372251 CCCGCGATCTCGATTCCTG 60.372 63.158 8.23 0.00 43.02 3.86
982 1003 2.018866 CCGCGATCTCGATTCCTGC 61.019 63.158 8.23 0.00 43.02 4.85
983 1004 2.018866 CGCGATCTCGATTCCTGCC 61.019 63.158 0.00 0.00 43.02 4.85
984 1005 2.018866 GCGATCTCGATTCCTGCCG 61.019 63.158 3.33 0.00 43.02 5.69
985 1006 1.372251 CGATCTCGATTCCTGCCGG 60.372 63.158 0.00 0.00 43.02 6.13
986 1007 1.796190 CGATCTCGATTCCTGCCGGA 61.796 60.000 5.05 0.00 43.02 5.14
987 1008 0.038709 GATCTCGATTCCTGCCGGAG 60.039 60.000 5.05 0.00 41.25 4.63
988 1009 2.093537 ATCTCGATTCCTGCCGGAGC 62.094 60.000 5.05 0.00 41.25 4.70
989 1010 4.207281 TCGATTCCTGCCGGAGCG 62.207 66.667 5.05 12.98 44.31 5.03
990 1011 4.207281 CGATTCCTGCCGGAGCGA 62.207 66.667 5.05 0.00 44.31 4.93
991 1012 2.279784 GATTCCTGCCGGAGCGAG 60.280 66.667 5.05 0.00 44.31 5.03
992 1013 3.798954 GATTCCTGCCGGAGCGAGG 62.799 68.421 5.05 4.02 44.31 4.63
1154 1175 2.202743 CGCGCAATTCTCCTCCGA 60.203 61.111 8.75 0.00 0.00 4.55
1231 1275 3.476031 ATCCGCCCCGTAGCCATTG 62.476 63.158 0.00 0.00 0.00 2.82
1244 1288 2.173669 CCATTGGCTCGTGCGTAGG 61.174 63.158 3.02 0.00 40.82 3.18
1246 1290 2.355986 ATTGGCTCGTGCGTAGGGA 61.356 57.895 3.02 0.00 40.82 4.20
1249 1293 2.962253 GCTCGTGCGTAGGGATGC 60.962 66.667 0.00 0.00 38.16 3.91
1257 1307 1.290324 CGTAGGGATGCTGGGATCG 59.710 63.158 0.00 0.00 0.00 3.69
1259 1309 1.048601 GTAGGGATGCTGGGATCGAA 58.951 55.000 0.00 0.00 0.00 3.71
1260 1310 1.625818 GTAGGGATGCTGGGATCGAAT 59.374 52.381 0.00 0.00 0.00 3.34
1261 1311 2.030027 AGGGATGCTGGGATCGAATA 57.970 50.000 0.00 0.00 0.00 1.75
1262 1312 1.625818 AGGGATGCTGGGATCGAATAC 59.374 52.381 0.00 0.00 0.00 1.89
1274 1324 2.438868 TCGAATACATGGGATGCGAG 57.561 50.000 8.47 0.00 0.00 5.03
1281 1331 1.224075 CATGGGATGCGAGATGTGAC 58.776 55.000 0.00 0.00 0.00 3.67
1282 1332 1.126488 ATGGGATGCGAGATGTGACT 58.874 50.000 0.00 0.00 0.00 3.41
1283 1333 1.775385 TGGGATGCGAGATGTGACTA 58.225 50.000 0.00 0.00 0.00 2.59
1284 1334 1.683385 TGGGATGCGAGATGTGACTAG 59.317 52.381 0.00 0.00 0.00 2.57
1285 1335 1.000283 GGGATGCGAGATGTGACTAGG 60.000 57.143 0.00 0.00 0.00 3.02
1286 1336 1.604185 GGATGCGAGATGTGACTAGGC 60.604 57.143 0.00 0.00 0.00 3.93
1287 1337 1.067669 GATGCGAGATGTGACTAGGCA 59.932 52.381 0.00 0.00 35.21 4.75
1290 1340 0.248661 CGAGATGTGACTAGGCACCG 60.249 60.000 25.99 17.52 37.99 4.94
1292 1342 1.878522 GATGTGACTAGGCACCGCG 60.879 63.158 25.99 0.00 37.99 6.46
1295 1345 2.092882 GTGACTAGGCACCGCGTTC 61.093 63.158 18.70 0.00 32.68 3.95
1296 1346 2.260434 GACTAGGCACCGCGTTCA 59.740 61.111 4.92 0.00 0.00 3.18
1298 1348 1.421410 GACTAGGCACCGCGTTCATG 61.421 60.000 4.92 0.00 0.00 3.07
1299 1349 2.813179 CTAGGCACCGCGTTCATGC 61.813 63.158 4.92 9.36 38.68 4.06
1308 1358 2.809174 CGTTCATGCGCACGAGGA 60.809 61.111 14.90 5.38 38.76 3.71
1309 1359 2.379634 CGTTCATGCGCACGAGGAA 61.380 57.895 14.90 11.97 38.76 3.36
1310 1360 1.695893 CGTTCATGCGCACGAGGAAT 61.696 55.000 14.90 0.00 38.76 3.01
1312 1362 0.673333 TTCATGCGCACGAGGAATGT 60.673 50.000 14.90 0.00 0.00 2.71
1313 1363 0.673333 TCATGCGCACGAGGAATGTT 60.673 50.000 14.90 0.00 0.00 2.71
1314 1364 0.247814 CATGCGCACGAGGAATGTTC 60.248 55.000 14.90 0.00 0.00 3.18
1315 1365 0.673333 ATGCGCACGAGGAATGTTCA 60.673 50.000 14.90 0.00 0.00 3.18
1316 1366 1.291184 TGCGCACGAGGAATGTTCAG 61.291 55.000 5.66 0.00 0.00 3.02
1320 1370 1.066430 GCACGAGGAATGTTCAGGGTA 60.066 52.381 0.00 0.00 0.00 3.69
1328 1378 2.254152 ATGTTCAGGGTAGAGGCAGA 57.746 50.000 0.00 0.00 0.00 4.26
1329 1379 1.267121 TGTTCAGGGTAGAGGCAGAC 58.733 55.000 0.00 0.00 0.00 3.51
1331 1381 0.970937 TTCAGGGTAGAGGCAGACGG 60.971 60.000 0.00 0.00 0.00 4.79
1333 1383 1.380112 AGGGTAGAGGCAGACGGTC 60.380 63.158 0.00 0.00 0.00 4.79
1334 1384 1.681327 GGGTAGAGGCAGACGGTCA 60.681 63.158 11.27 0.00 0.00 4.02
1335 1385 1.043673 GGGTAGAGGCAGACGGTCAT 61.044 60.000 11.27 0.00 0.00 3.06
1336 1386 0.824759 GGTAGAGGCAGACGGTCATT 59.175 55.000 11.27 0.00 0.00 2.57
1337 1387 1.207329 GGTAGAGGCAGACGGTCATTT 59.793 52.381 11.27 0.00 0.00 2.32
1338 1388 2.541556 GTAGAGGCAGACGGTCATTTC 58.458 52.381 11.27 2.77 0.00 2.17
1339 1389 0.250513 AGAGGCAGACGGTCATTTCC 59.749 55.000 11.27 5.52 0.00 3.13
1347 1397 2.750815 CGGTCATTTCCGTCCTGTC 58.249 57.895 0.00 0.00 44.77 3.51
1348 1398 0.739813 CGGTCATTTCCGTCCTGTCC 60.740 60.000 0.00 0.00 44.77 4.02
1356 1406 2.752238 CGTCCTGTCCCGCTCTCT 60.752 66.667 0.00 0.00 0.00 3.10
1357 1407 2.344203 CGTCCTGTCCCGCTCTCTT 61.344 63.158 0.00 0.00 0.00 2.85
1358 1408 1.513622 GTCCTGTCCCGCTCTCTTC 59.486 63.158 0.00 0.00 0.00 2.87
1370 1459 1.335872 GCTCTCTTCGGCTAGCTGATC 60.336 57.143 26.50 2.64 32.18 2.92
1373 1462 1.335182 CTCTTCGGCTAGCTGATCGAA 59.665 52.381 26.50 22.94 38.96 3.71
1375 1464 1.855360 CTTCGGCTAGCTGATCGAAAC 59.145 52.381 26.50 0.00 40.38 2.78
1376 1465 0.815095 TCGGCTAGCTGATCGAAACA 59.185 50.000 22.56 0.00 0.00 2.83
1378 1467 1.576356 GGCTAGCTGATCGAAACAGG 58.424 55.000 15.72 8.43 36.09 4.00
1389 1478 4.224147 TGATCGAAACAGGGGAGTTTATCA 59.776 41.667 0.00 0.00 41.48 2.15
1393 1482 4.262617 GAAACAGGGGAGTTTATCAGGAC 58.737 47.826 0.00 0.00 41.48 3.85
1398 1487 2.436173 GGGGAGTTTATCAGGACAGGAG 59.564 54.545 0.00 0.00 0.00 3.69
1399 1488 3.108376 GGGAGTTTATCAGGACAGGAGT 58.892 50.000 0.00 0.00 0.00 3.85
1401 1490 4.715297 GGGAGTTTATCAGGACAGGAGTTA 59.285 45.833 0.00 0.00 0.00 2.24
1402 1491 5.163395 GGGAGTTTATCAGGACAGGAGTTAG 60.163 48.000 0.00 0.00 0.00 2.34
1403 1492 5.346181 AGTTTATCAGGACAGGAGTTAGC 57.654 43.478 0.00 0.00 0.00 3.09
1405 1494 5.248477 AGTTTATCAGGACAGGAGTTAGCAA 59.752 40.000 0.00 0.00 0.00 3.91
1406 1495 3.902881 ATCAGGACAGGAGTTAGCAAG 57.097 47.619 0.00 0.00 0.00 4.01
1407 1496 2.609747 TCAGGACAGGAGTTAGCAAGT 58.390 47.619 0.00 0.00 0.00 3.16
1409 1498 4.157246 TCAGGACAGGAGTTAGCAAGTTA 58.843 43.478 0.00 0.00 0.00 2.24
1412 1501 4.221041 AGGACAGGAGTTAGCAAGTTACTC 59.779 45.833 0.00 0.00 38.02 2.59
1418 1507 7.152645 CAGGAGTTAGCAAGTTACTCAAGTTA 58.847 38.462 6.00 0.00 39.98 2.24
1419 1508 7.819900 CAGGAGTTAGCAAGTTACTCAAGTTAT 59.180 37.037 6.00 0.00 39.98 1.89
1422 1511 8.904099 AGTTAGCAAGTTACTCAAGTTATTGT 57.096 30.769 0.00 0.00 37.68 2.71
1439 1545 2.162319 TGTTGCGCACTGTGATCTAA 57.838 45.000 11.12 0.00 0.00 2.10
1440 1546 2.488952 TGTTGCGCACTGTGATCTAAA 58.511 42.857 11.12 0.00 0.00 1.85
1441 1547 2.223144 TGTTGCGCACTGTGATCTAAAC 59.777 45.455 11.12 0.61 0.00 2.01
1444 1550 2.480037 TGCGCACTGTGATCTAAACTTG 59.520 45.455 5.66 0.00 0.00 3.16
1479 1585 6.355397 ACATGCTTATCAAATCTTCAGACG 57.645 37.500 0.00 0.00 0.00 4.18
1480 1586 5.877012 ACATGCTTATCAAATCTTCAGACGT 59.123 36.000 0.00 0.00 0.00 4.34
1498 1604 2.816689 CGTAATGTACGCCAAGGATCA 58.183 47.619 0.00 0.00 45.81 2.92
1503 1609 4.890158 ATGTACGCCAAGGATCATATGA 57.110 40.909 8.10 8.10 0.00 2.15
1507 1613 2.224378 ACGCCAAGGATCATATGACTGG 60.224 50.000 7.78 12.97 0.00 4.00
1508 1614 2.157738 GCCAAGGATCATATGACTGGC 58.842 52.381 23.53 23.53 0.00 4.85
1509 1615 2.787994 CCAAGGATCATATGACTGGCC 58.212 52.381 7.78 7.52 0.00 5.36
1510 1616 2.420642 CAAGGATCATATGACTGGCCG 58.579 52.381 7.78 0.00 0.00 6.13
1512 1618 0.674895 GGATCATATGACTGGCCGGC 60.675 60.000 21.18 21.18 0.00 6.13
1531 1638 1.296715 GTGCCGATCCAGTGTTCCT 59.703 57.895 0.00 0.00 0.00 3.36
1533 1640 0.036388 TGCCGATCCAGTGTTCCTTC 60.036 55.000 0.00 0.00 0.00 3.46
1540 1647 1.571460 CAGTGTTCCTTCGTGCTGC 59.429 57.895 0.00 0.00 0.00 5.25
1543 1650 4.430423 GTTCCTTCGTGCTGCGCG 62.430 66.667 27.90 27.90 41.07 6.86
1547 1654 3.406361 CTTCGTGCTGCGCGACTT 61.406 61.111 34.42 0.00 45.96 3.01
1552 1659 3.043713 TGCTGCGCGACTTCCTTG 61.044 61.111 12.10 0.00 0.00 3.61
1555 1662 2.358615 TGCGCGACTTCCTTGCAT 60.359 55.556 12.10 0.00 0.00 3.96
1575 1682 6.209361 TGCATTGCGTTTTGTTTATTCTGTA 58.791 32.000 3.84 0.00 0.00 2.74
1591 1698 9.999009 TTTATTCTGTAATGACTACTGAGTACG 57.001 33.333 0.00 0.00 39.02 3.67
1592 1699 6.432607 TTCTGTAATGACTACTGAGTACGG 57.567 41.667 0.00 0.00 39.02 4.02
1593 1700 5.737860 TCTGTAATGACTACTGAGTACGGA 58.262 41.667 0.00 0.00 35.45 4.69
1594 1701 5.816258 TCTGTAATGACTACTGAGTACGGAG 59.184 44.000 0.00 0.00 35.45 4.63
1645 1752 2.548480 GGTGGTTCAAGACAAGCTGTAC 59.452 50.000 0.00 0.00 0.00 2.90
1669 1776 4.522975 GGGGGAAGCCGGAATGGG 62.523 72.222 5.05 0.00 38.63 4.00
1749 1864 4.389374 TCTGTTCCTTCATCACCTGAAAC 58.611 43.478 0.00 0.00 43.20 2.78
1761 1876 7.629157 TCATCACCTGAAACATATCCTAACAA 58.371 34.615 0.00 0.00 0.00 2.83
1762 1877 8.274322 TCATCACCTGAAACATATCCTAACAAT 58.726 33.333 0.00 0.00 0.00 2.71
1794 1909 2.160417 GCAGGTCTTTGATTTCAGGACG 59.840 50.000 8.55 0.00 34.02 4.79
1812 1927 0.319211 CGTCCAAGTGGTCAGCGTTA 60.319 55.000 0.00 0.00 36.34 3.18
1928 2043 8.457261 GGTAATGATATCATCTTCCATTTCTGC 58.543 37.037 18.44 2.94 35.10 4.26
2020 2135 4.988540 TGACTAGTGTTTTCATTCAGGTCG 59.011 41.667 0.00 0.00 0.00 4.79
2031 2146 0.966920 TTCAGGTCGAGTGGAGGAAC 59.033 55.000 0.00 0.00 0.00 3.62
2130 2245 7.172703 CCTCTTTCTTGGTTCATACTAAAACGT 59.827 37.037 0.00 0.00 0.00 3.99
2144 2259 4.976116 ACTAAAACGTTGAGCAGCAAATTC 59.024 37.500 0.00 0.00 38.44 2.17
2171 2287 5.102313 GTCATGGCTTTGCTTAAACATACC 58.898 41.667 0.00 0.00 0.00 2.73
2184 2300 9.740239 TGCTTAAACATACCTAGTAATAGTTCG 57.260 33.333 0.00 0.00 0.00 3.95
2221 2337 2.184167 CGCACCACCACCGAAAACT 61.184 57.895 0.00 0.00 0.00 2.66
2238 2354 8.234546 ACCGAAAACTATGACATATTTGTTGAC 58.765 33.333 5.05 1.31 35.79 3.18
2239 2355 8.233868 CCGAAAACTATGACATATTTGTTGACA 58.766 33.333 5.05 0.00 35.79 3.58
2259 2375 5.533154 TGACACCCCTAAATGTTGTAAGTTG 59.467 40.000 0.00 0.00 0.00 3.16
2281 2397 5.582550 TGCACGATCATAGAGTTGTTCTAG 58.417 41.667 0.00 0.00 41.57 2.43
2296 2412 4.469552 TGTTCTAGTGTCGTACATGAACG 58.530 43.478 0.00 0.00 41.92 3.95
2357 2482 7.220741 TCTTAGTCTATGTCAGTCCATATGC 57.779 40.000 0.00 0.00 0.00 3.14
2471 2600 7.640616 TTCATTTCATTGTGCTGTTTACATG 57.359 32.000 0.00 0.00 0.00 3.21
2522 2651 6.377429 AGTGAATCAACATGCTTCATCTCAAT 59.623 34.615 0.00 0.00 35.36 2.57
2551 2680 6.100424 ACAAGTTACATTTTCCCCAAATTCCA 59.900 34.615 0.00 0.00 32.24 3.53
2586 2715 1.693606 CCAGTTTCCATTGCCTTTGGT 59.306 47.619 0.00 0.00 35.64 3.67
2587 2716 2.104622 CCAGTTTCCATTGCCTTTGGTT 59.895 45.455 0.00 0.00 35.64 3.67
2865 3002 8.148351 ACTTTACAAGTACTAGAACTGATTGCA 58.852 33.333 0.00 0.00 40.69 4.08
2866 3003 9.155975 CTTTACAAGTACTAGAACTGATTGCAT 57.844 33.333 0.00 0.00 0.00 3.96
2957 3094 6.003950 TGGAAAAGTCCCAGTAAGAATCTTG 58.996 40.000 5.64 0.00 44.23 3.02
3015 3152 1.909302 TGTTCTGAATCCTCCCTCCAC 59.091 52.381 0.00 0.00 0.00 4.02
3665 3803 7.050970 TCCATTTCACTATCGCTAACTACAT 57.949 36.000 0.00 0.00 0.00 2.29
3679 3817 7.063780 TCGCTAACTACATATCAATGCATCATG 59.936 37.037 0.00 4.43 36.50 3.07
3773 3911 4.023193 CCTCTTGAGCCAAATTTAACACGT 60.023 41.667 0.00 0.00 0.00 4.49
3782 3920 6.433093 AGCCAAATTTAACACGTCTTTAGGAT 59.567 34.615 0.00 0.00 0.00 3.24
3785 3923 7.480542 CCAAATTTAACACGTCTTTAGGATTCG 59.519 37.037 0.00 0.00 0.00 3.34
3798 3936 9.798994 GTCTTTAGGATTCGACTGATAAGTTTA 57.201 33.333 0.00 0.00 0.00 2.01
3902 4040 4.122046 TGCTGGTATGATGATTGACGAAG 58.878 43.478 0.00 0.00 0.00 3.79
4279 4418 7.826690 TGACTTCTTAACATATTTTTCAGGGC 58.173 34.615 0.00 0.00 0.00 5.19
4463 4602 2.815503 TGTTGTCATGCCATTGTCTCTG 59.184 45.455 0.00 0.00 0.00 3.35
4517 4658 9.668497 GTTTAGGGTGAAGTTACATATTCTTCT 57.332 33.333 0.00 0.00 38.52 2.85
4599 4748 7.119992 TCAGTTAAGCATACGCCTAATGAAAAA 59.880 33.333 0.00 0.00 39.83 1.94
4913 5062 9.606631 ACTCAAAGCTAAAGGATAAACTAGATG 57.393 33.333 0.00 0.00 0.00 2.90
4928 5077 2.568623 AGATGTGGTGAAGTTGTCCC 57.431 50.000 0.00 0.00 0.00 4.46
4939 5088 4.984161 GTGAAGTTGTCCCACAATGAATTG 59.016 41.667 1.45 1.45 40.59 2.32
5008 5159 4.207891 TCTTTCCATACTGCAGAAGGAC 57.792 45.455 23.35 0.00 0.00 3.85
5025 5176 7.254932 GCAGAAGGACATTCTTATTCACCATAC 60.255 40.741 0.00 0.00 46.49 2.39
5026 5177 6.986817 AGAAGGACATTCTTATTCACCATACG 59.013 38.462 0.00 0.00 46.49 3.06
5039 5190 4.647611 TCACCATACGAATTTCCACTGTT 58.352 39.130 0.00 0.00 0.00 3.16
5132 5286 1.151668 CTGGAGGTTCTGAACTTGCG 58.848 55.000 19.05 10.12 31.39 4.85
5133 5287 0.468226 TGGAGGTTCTGAACTTGCGT 59.532 50.000 19.05 0.91 31.39 5.24
5153 5307 6.140786 TGCGTACTATAATTAGTTCTGAGCG 58.859 40.000 0.00 0.00 39.42 5.03
5156 5310 6.577800 CGTACTATAATTAGTTCTGAGCGTGG 59.422 42.308 0.00 0.00 39.42 4.94
5162 5316 0.681733 AGTTCTGAGCGTGGACACAT 59.318 50.000 3.12 0.00 0.00 3.21
5173 5327 4.458989 AGCGTGGACACATGTATTTTCAAT 59.541 37.500 0.00 0.00 35.99 2.57
5179 5333 6.947733 TGGACACATGTATTTTCAATTCTCCT 59.052 34.615 0.00 0.00 0.00 3.69
5265 5419 3.084786 GCATAAAAGGTTGGAGTCTGCT 58.915 45.455 0.00 0.00 0.00 4.24
5277 5431 3.093057 GGAGTCTGCTAGTTCTCTGGAA 58.907 50.000 0.00 0.00 0.00 3.53
5316 5470 2.540361 GCAGCAACAAATATCTCAGGCG 60.540 50.000 0.00 0.00 0.00 5.52
5352 5506 3.119814 CGACTTCTCAGAGACGGAAATCA 60.120 47.826 8.70 0.00 32.58 2.57
5361 5515 2.824041 CGGAAATCAGGGGGCGTG 60.824 66.667 0.00 0.00 0.00 5.34
5481 5636 5.869344 TGTTACTGTGCTAAGCTATTGTCAG 59.131 40.000 0.00 0.00 0.00 3.51
5508 5663 4.422840 TCATGGTTATCATTTTGCGCAAG 58.577 39.130 23.68 12.29 32.92 4.01
5516 5672 5.927954 ATCATTTTGCGCAAGAATTTTGT 57.072 30.435 23.68 0.00 43.02 2.83
5642 5814 4.220382 TGAACATTAAAGGGTGATTGCCTG 59.780 41.667 0.00 0.00 0.00 4.85
5834 6011 5.245531 TCTTGTATGCTTACAGAACCAAGG 58.754 41.667 11.77 0.00 39.43 3.61
5853 6044 0.813821 GACAGCAAAATCCTGGAGGC 59.186 55.000 1.52 3.51 34.65 4.70
5872 6063 7.118723 TGGAGGCAGAGAAATGTAAATGTATT 58.881 34.615 0.00 0.00 0.00 1.89
5888 6079 2.423185 TGTATTCCAAAGCTGCATTCCG 59.577 45.455 1.02 0.00 0.00 4.30
5895 6086 2.642139 AAGCTGCATTCCGTTTCATG 57.358 45.000 1.02 0.00 0.00 3.07
5904 6095 4.798387 GCATTCCGTTTCATGTATTTGACC 59.202 41.667 0.00 0.00 0.00 4.02
5905 6096 5.339990 CATTCCGTTTCATGTATTTGACCC 58.660 41.667 0.00 0.00 0.00 4.46
5907 6098 2.745281 CCGTTTCATGTATTTGACCCGT 59.255 45.455 0.00 0.00 0.00 5.28
5927 6118 5.295152 CCGTGTTATACTGATTTCCCTACC 58.705 45.833 0.00 0.00 0.00 3.18
5959 6150 3.008375 ACCTCTGCTCAACTTGCTCAATA 59.992 43.478 0.00 0.00 0.00 1.90
5967 6158 8.054152 TGCTCAACTTGCTCAATATTTCATAA 57.946 30.769 0.00 0.00 0.00 1.90
6054 6246 4.669318 TGATTTCGCTAAACTAGAGTCCG 58.331 43.478 0.00 0.00 0.00 4.79
6083 6275 5.963594 ACTATCGGTTCTCCTTTTACAGAC 58.036 41.667 0.00 0.00 0.00 3.51
6100 6292 3.320826 ACAGACCCCCTTTCAATTTTTCG 59.679 43.478 0.00 0.00 0.00 3.46
6130 6322 6.583050 GCTCGATATGTGATAGTACAACTTCC 59.417 42.308 0.00 0.00 33.69 3.46
6250 6442 2.050077 GCTTGTTTGTCGCAGGCC 60.050 61.111 0.00 0.00 33.60 5.19
6296 6488 3.296516 GCGACTGATTTTGCGAAGG 57.703 52.632 0.00 0.00 0.00 3.46
6298 6490 0.519175 CGACTGATTTTGCGAAGGCG 60.519 55.000 0.00 0.00 44.10 5.52
6357 6556 4.070009 GACACCTGGTAGAAATTTTCCGT 58.930 43.478 0.00 0.00 0.00 4.69
6358 6557 5.231702 ACACCTGGTAGAAATTTTCCGTA 57.768 39.130 0.00 0.00 0.00 4.02
6359 6558 5.243207 ACACCTGGTAGAAATTTTCCGTAG 58.757 41.667 0.00 0.67 0.00 3.51
6396 6595 1.807000 TTGCACAGCAAAAGCATGGTG 60.807 47.619 12.82 12.82 45.96 4.17
6400 6599 2.352503 CAGCAAAAGCATGGTGGTAC 57.647 50.000 0.00 0.00 43.33 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.092429 ACCCTGGTATGCAATGTAGTGG 60.092 50.000 0.00 0.00 0.00 4.00
82 84 4.394729 GTGTTCAGTTTTGTCCATCCCTA 58.605 43.478 0.00 0.00 0.00 3.53
110 112 2.034432 TCATTGCTTGACACAAACGCAT 59.966 40.909 0.00 0.00 0.00 4.73
239 249 1.916181 AGGACGACAATCCCTCCAAAT 59.084 47.619 0.00 0.00 39.91 2.32
591 602 4.256920 CACAAGGATGACTCTTACTTGGG 58.743 47.826 17.27 11.72 41.98 4.12
592 603 3.686726 GCACAAGGATGACTCTTACTTGG 59.313 47.826 17.27 9.80 41.98 3.61
593 604 4.391216 CAGCACAAGGATGACTCTTACTTG 59.609 45.833 13.16 13.16 43.01 3.16
594 605 4.573900 CAGCACAAGGATGACTCTTACTT 58.426 43.478 0.00 0.00 33.82 2.24
595 606 3.618507 GCAGCACAAGGATGACTCTTACT 60.619 47.826 0.00 0.00 33.82 2.24
596 607 2.675348 GCAGCACAAGGATGACTCTTAC 59.325 50.000 0.00 0.00 33.82 2.34
597 608 2.302733 TGCAGCACAAGGATGACTCTTA 59.697 45.455 0.00 0.00 33.82 2.10
598 609 1.072806 TGCAGCACAAGGATGACTCTT 59.927 47.619 0.00 0.00 33.82 2.85
599 610 0.689055 TGCAGCACAAGGATGACTCT 59.311 50.000 0.00 0.00 33.82 3.24
600 611 1.527034 TTGCAGCACAAGGATGACTC 58.473 50.000 0.00 0.00 33.82 3.36
601 612 1.884579 CTTTGCAGCACAAGGATGACT 59.115 47.619 0.00 0.00 40.06 3.41
602 613 1.881973 TCTTTGCAGCACAAGGATGAC 59.118 47.619 13.89 0.00 39.27 3.06
603 614 1.881973 GTCTTTGCAGCACAAGGATGA 59.118 47.619 13.89 0.00 45.07 2.92
604 615 1.884579 AGTCTTTGCAGCACAAGGATG 59.115 47.619 13.89 0.00 45.07 3.51
605 616 2.157738 GAGTCTTTGCAGCACAAGGAT 58.842 47.619 13.89 6.34 45.07 3.24
606 617 1.597742 GAGTCTTTGCAGCACAAGGA 58.402 50.000 13.89 0.94 41.66 3.36
607 618 0.236711 CGAGTCTTTGCAGCACAAGG 59.763 55.000 13.89 0.00 40.06 3.61
608 619 0.236711 CCGAGTCTTTGCAGCACAAG 59.763 55.000 0.00 2.75 40.06 3.16
609 620 0.463654 ACCGAGTCTTTGCAGCACAA 60.464 50.000 0.00 0.00 36.13 3.33
610 621 0.391228 TACCGAGTCTTTGCAGCACA 59.609 50.000 0.00 0.00 0.00 4.57
611 622 1.726853 ATACCGAGTCTTTGCAGCAC 58.273 50.000 0.00 0.00 0.00 4.40
612 623 2.076100 CAATACCGAGTCTTTGCAGCA 58.924 47.619 0.00 0.00 0.00 4.41
613 624 1.398390 CCAATACCGAGTCTTTGCAGC 59.602 52.381 0.00 0.00 0.00 5.25
614 625 2.009774 CCCAATACCGAGTCTTTGCAG 58.990 52.381 0.00 0.00 0.00 4.41
615 626 1.626321 TCCCAATACCGAGTCTTTGCA 59.374 47.619 0.00 0.00 0.00 4.08
616 627 2.093658 TCTCCCAATACCGAGTCTTTGC 60.094 50.000 0.00 0.00 0.00 3.68
617 628 3.430929 CCTCTCCCAATACCGAGTCTTTG 60.431 52.174 0.00 0.00 0.00 2.77
618 629 2.766828 CCTCTCCCAATACCGAGTCTTT 59.233 50.000 0.00 0.00 0.00 2.52
619 630 2.389715 CCTCTCCCAATACCGAGTCTT 58.610 52.381 0.00 0.00 0.00 3.01
620 631 2.030045 GCCTCTCCCAATACCGAGTCT 61.030 57.143 0.00 0.00 0.00 3.24
621 632 0.389757 GCCTCTCCCAATACCGAGTC 59.610 60.000 0.00 0.00 0.00 3.36
622 633 1.392710 CGCCTCTCCCAATACCGAGT 61.393 60.000 0.00 0.00 0.00 4.18
623 634 1.364171 CGCCTCTCCCAATACCGAG 59.636 63.158 0.00 0.00 0.00 4.63
624 635 2.792947 GCGCCTCTCCCAATACCGA 61.793 63.158 0.00 0.00 0.00 4.69
625 636 2.280186 GCGCCTCTCCCAATACCG 60.280 66.667 0.00 0.00 0.00 4.02
626 637 1.984288 AAGGCGCCTCTCCCAATACC 61.984 60.000 32.93 0.00 0.00 2.73
627 638 0.107165 AAAGGCGCCTCTCCCAATAC 60.107 55.000 32.93 0.00 0.00 1.89
628 639 0.107214 CAAAGGCGCCTCTCCCAATA 60.107 55.000 32.93 0.00 0.00 1.90
629 640 1.379044 CAAAGGCGCCTCTCCCAAT 60.379 57.895 32.93 9.57 0.00 3.16
630 641 1.852157 ATCAAAGGCGCCTCTCCCAA 61.852 55.000 32.93 12.83 0.00 4.12
631 642 2.300967 ATCAAAGGCGCCTCTCCCA 61.301 57.895 32.93 12.82 0.00 4.37
632 643 1.821332 CATCAAAGGCGCCTCTCCC 60.821 63.158 32.93 0.00 0.00 4.30
633 644 2.476320 GCATCAAAGGCGCCTCTCC 61.476 63.158 32.93 11.46 0.00 3.71
634 645 3.105659 GCATCAAAGGCGCCTCTC 58.894 61.111 32.93 11.43 0.00 3.20
641 652 1.125847 CGTAAACGCGCATCAAAGGC 61.126 55.000 5.73 0.00 0.00 4.35
642 653 2.911198 CGTAAACGCGCATCAAAGG 58.089 52.632 5.73 0.00 0.00 3.11
653 664 1.072116 TTCCGTCCGATGCGTAAACG 61.072 55.000 0.00 0.00 43.27 3.60
654 665 1.283736 ATTCCGTCCGATGCGTAAAC 58.716 50.000 0.00 0.00 0.00 2.01
655 666 2.867287 TATTCCGTCCGATGCGTAAA 57.133 45.000 0.00 0.00 0.00 2.01
656 667 2.668250 CATATTCCGTCCGATGCGTAA 58.332 47.619 0.00 0.00 0.00 3.18
657 668 1.667756 GCATATTCCGTCCGATGCGTA 60.668 52.381 0.00 0.00 35.75 4.42
658 669 0.944311 GCATATTCCGTCCGATGCGT 60.944 55.000 0.00 0.00 35.75 5.24
659 670 1.626654 GGCATATTCCGTCCGATGCG 61.627 60.000 0.00 0.00 44.53 4.73
660 671 0.320771 AGGCATATTCCGTCCGATGC 60.321 55.000 0.00 0.00 43.19 3.91
661 672 2.607187 GTAGGCATATTCCGTCCGATG 58.393 52.381 0.00 0.00 0.00 3.84
662 673 1.201647 CGTAGGCATATTCCGTCCGAT 59.798 52.381 0.00 0.00 0.00 4.18
663 674 0.594602 CGTAGGCATATTCCGTCCGA 59.405 55.000 0.00 0.00 0.00 4.55
664 675 1.007336 GCGTAGGCATATTCCGTCCG 61.007 60.000 1.75 0.00 39.62 4.79
665 676 2.823628 GCGTAGGCATATTCCGTCC 58.176 57.895 1.75 0.00 39.62 4.79
692 703 9.165014 CGTATTTCGTCTCATCAAAAAGAAAAA 57.835 29.630 0.00 0.00 31.29 1.94
693 704 7.322699 GCGTATTTCGTCTCATCAAAAAGAAAA 59.677 33.333 0.00 0.00 42.13 2.29
694 705 6.795114 GCGTATTTCGTCTCATCAAAAAGAAA 59.205 34.615 0.00 0.00 42.13 2.52
695 706 6.304126 GCGTATTTCGTCTCATCAAAAAGAA 58.696 36.000 0.00 0.00 42.13 2.52
696 707 5.163893 GGCGTATTTCGTCTCATCAAAAAGA 60.164 40.000 0.00 0.00 41.33 2.52
697 708 5.022021 GGCGTATTTCGTCTCATCAAAAAG 58.978 41.667 0.00 0.00 41.33 2.27
698 709 4.965062 GGCGTATTTCGTCTCATCAAAAA 58.035 39.130 0.00 0.00 41.33 1.94
699 710 4.593597 GGCGTATTTCGTCTCATCAAAA 57.406 40.909 0.00 0.00 41.33 2.44
708 719 0.297820 CAGCGAAGGCGTATTTCGTC 59.702 55.000 15.61 10.16 46.67 4.20
709 720 0.389426 ACAGCGAAGGCGTATTTCGT 60.389 50.000 15.61 4.63 46.67 3.85
711 722 1.790481 GCAACAGCGAAGGCGTATTTC 60.790 52.381 0.00 0.00 46.35 2.17
712 723 0.168128 GCAACAGCGAAGGCGTATTT 59.832 50.000 0.00 0.00 46.35 1.40
749 760 3.893200 TCACGTCCCTTCTTCTTACAAGA 59.107 43.478 0.00 0.00 0.00 3.02
755 766 1.344763 CCTGTCACGTCCCTTCTTCTT 59.655 52.381 0.00 0.00 0.00 2.52
763 784 2.126189 GCGTACCTGTCACGTCCC 60.126 66.667 0.00 0.00 41.41 4.46
789 810 1.516603 GTCGTCGCTGCCTACCTTC 60.517 63.158 0.00 0.00 0.00 3.46
832 853 2.285818 ATTAGGGTGTGCCGGGGA 60.286 61.111 2.18 0.00 34.97 4.81
842 863 1.525442 CCGGGAAAGCGATTAGGGT 59.475 57.895 0.00 0.00 0.00 4.34
844 865 0.107361 AACCCGGGAAAGCGATTAGG 60.107 55.000 32.02 0.00 0.00 2.69
851 872 2.443887 GGTTTTAAACCCGGGAAAGC 57.556 50.000 32.02 22.31 46.12 3.51
873 894 3.209812 CGGCTCGTCGGATCTGGA 61.210 66.667 0.62 0.00 0.00 3.86
890 911 2.106683 CCGGCGGATTGACTTGGTC 61.107 63.158 24.41 0.00 0.00 4.02
891 912 2.046314 CCGGCGGATTGACTTGGT 60.046 61.111 24.41 0.00 0.00 3.67
894 915 4.028490 TGGCCGGCGGATTGACTT 62.028 61.111 33.44 0.00 0.00 3.01
984 1005 3.541713 ATTCCTCCGCCTCGCTCC 61.542 66.667 0.00 0.00 0.00 4.70
985 1006 2.279784 CATTCCTCCGCCTCGCTC 60.280 66.667 0.00 0.00 0.00 5.03
986 1007 3.854669 CCATTCCTCCGCCTCGCT 61.855 66.667 0.00 0.00 0.00 4.93
987 1008 4.918201 CCCATTCCTCCGCCTCGC 62.918 72.222 0.00 0.00 0.00 5.03
988 1009 4.241555 CCCCATTCCTCCGCCTCG 62.242 72.222 0.00 0.00 0.00 4.63
989 1010 3.878667 CCCCCATTCCTCCGCCTC 61.879 72.222 0.00 0.00 0.00 4.70
990 1011 4.760220 ACCCCCATTCCTCCGCCT 62.760 66.667 0.00 0.00 0.00 5.52
991 1012 4.506255 CACCCCCATTCCTCCGCC 62.506 72.222 0.00 0.00 0.00 6.13
992 1013 4.506255 CCACCCCCATTCCTCCGC 62.506 72.222 0.00 0.00 0.00 5.54
993 1014 2.690881 TCCACCCCCATTCCTCCG 60.691 66.667 0.00 0.00 0.00 4.63
994 1015 2.386935 CCTCCACCCCCATTCCTCC 61.387 68.421 0.00 0.00 0.00 4.30
995 1016 1.307866 TCCTCCACCCCCATTCCTC 60.308 63.158 0.00 0.00 0.00 3.71
996 1017 1.308216 CTCCTCCACCCCCATTCCT 60.308 63.158 0.00 0.00 0.00 3.36
1148 1169 2.890474 CGACGGCCAAATCGGAGG 60.890 66.667 12.13 0.00 36.56 4.30
1228 1272 1.686325 ATCCCTACGCACGAGCCAAT 61.686 55.000 0.00 0.00 37.52 3.16
1231 1275 2.279517 CATCCCTACGCACGAGCC 60.280 66.667 0.00 0.00 37.52 4.70
1239 1283 1.179174 TCGATCCCAGCATCCCTACG 61.179 60.000 0.00 0.00 0.00 3.51
1244 1288 2.839486 TGTATTCGATCCCAGCATCC 57.161 50.000 0.00 0.00 0.00 3.51
1246 1290 2.290514 CCCATGTATTCGATCCCAGCAT 60.291 50.000 0.00 0.00 0.00 3.79
1249 1293 3.603532 CATCCCATGTATTCGATCCCAG 58.396 50.000 0.00 0.00 0.00 4.45
1257 1307 3.434641 CACATCTCGCATCCCATGTATTC 59.565 47.826 0.00 0.00 0.00 1.75
1259 1309 2.634453 TCACATCTCGCATCCCATGTAT 59.366 45.455 0.00 0.00 0.00 2.29
1260 1310 2.038659 TCACATCTCGCATCCCATGTA 58.961 47.619 0.00 0.00 0.00 2.29
1261 1311 0.832626 TCACATCTCGCATCCCATGT 59.167 50.000 0.00 0.00 0.00 3.21
1262 1312 1.202615 AGTCACATCTCGCATCCCATG 60.203 52.381 0.00 0.00 0.00 3.66
1274 1324 1.878522 CGCGGTGCCTAGTCACATC 60.879 63.158 6.21 0.00 38.66 3.06
1281 1331 2.813179 GCATGAACGCGGTGCCTAG 61.813 63.158 12.47 0.00 32.88 3.02
1282 1332 2.817834 GCATGAACGCGGTGCCTA 60.818 61.111 12.47 0.00 32.88 3.93
1292 1342 0.247814 CATTCCTCGTGCGCATGAAC 60.248 55.000 30.52 9.75 0.00 3.18
1295 1345 0.247814 GAACATTCCTCGTGCGCATG 60.248 55.000 23.73 23.73 0.00 4.06
1296 1346 0.673333 TGAACATTCCTCGTGCGCAT 60.673 50.000 15.91 0.00 0.00 4.73
1298 1348 1.421485 CTGAACATTCCTCGTGCGC 59.579 57.895 0.00 0.00 0.00 6.09
1299 1349 1.361668 CCCTGAACATTCCTCGTGCG 61.362 60.000 0.00 0.00 0.00 5.34
1300 1350 0.321653 ACCCTGAACATTCCTCGTGC 60.322 55.000 0.00 0.00 0.00 5.34
1302 1352 2.761208 CTCTACCCTGAACATTCCTCGT 59.239 50.000 0.00 0.00 0.00 4.18
1303 1353 2.101582 CCTCTACCCTGAACATTCCTCG 59.898 54.545 0.00 0.00 0.00 4.63
1304 1354 2.158885 GCCTCTACCCTGAACATTCCTC 60.159 54.545 0.00 0.00 0.00 3.71
1306 1356 1.559682 TGCCTCTACCCTGAACATTCC 59.440 52.381 0.00 0.00 0.00 3.01
1307 1357 2.501723 TCTGCCTCTACCCTGAACATTC 59.498 50.000 0.00 0.00 0.00 2.67
1308 1358 2.237392 GTCTGCCTCTACCCTGAACATT 59.763 50.000 0.00 0.00 0.00 2.71
1309 1359 1.834263 GTCTGCCTCTACCCTGAACAT 59.166 52.381 0.00 0.00 0.00 2.71
1310 1360 1.267121 GTCTGCCTCTACCCTGAACA 58.733 55.000 0.00 0.00 0.00 3.18
1312 1362 0.970937 CCGTCTGCCTCTACCCTGAA 60.971 60.000 0.00 0.00 0.00 3.02
1313 1363 1.379977 CCGTCTGCCTCTACCCTGA 60.380 63.158 0.00 0.00 0.00 3.86
1314 1364 1.668101 GACCGTCTGCCTCTACCCTG 61.668 65.000 0.00 0.00 0.00 4.45
1315 1365 1.380112 GACCGTCTGCCTCTACCCT 60.380 63.158 0.00 0.00 0.00 4.34
1316 1366 1.043673 ATGACCGTCTGCCTCTACCC 61.044 60.000 0.00 0.00 0.00 3.69
1320 1370 0.250513 GGAAATGACCGTCTGCCTCT 59.749 55.000 0.00 0.00 0.00 3.69
1331 1381 0.739813 CGGGACAGGACGGAAATGAC 60.740 60.000 0.00 0.00 0.00 3.06
1333 1383 2.106683 GCGGGACAGGACGGAAATG 61.107 63.158 0.00 0.00 0.00 2.32
1334 1384 2.240162 GAGCGGGACAGGACGGAAAT 62.240 60.000 0.00 0.00 0.00 2.17
1335 1385 2.920912 AGCGGGACAGGACGGAAA 60.921 61.111 0.00 0.00 0.00 3.13
1336 1386 3.379445 GAGCGGGACAGGACGGAA 61.379 66.667 0.00 0.00 0.00 4.30
1337 1387 4.361971 AGAGCGGGACAGGACGGA 62.362 66.667 0.00 0.00 0.00 4.69
1338 1388 3.827898 GAGAGCGGGACAGGACGG 61.828 72.222 0.00 0.00 0.00 4.79
1339 1389 2.272918 GAAGAGAGCGGGACAGGACG 62.273 65.000 0.00 0.00 0.00 4.79
1341 1391 2.046864 CGAAGAGAGCGGGACAGGA 61.047 63.158 0.00 0.00 0.00 3.86
1342 1392 2.492090 CGAAGAGAGCGGGACAGG 59.508 66.667 0.00 0.00 0.00 4.00
1343 1393 2.492090 CCGAAGAGAGCGGGACAG 59.508 66.667 0.00 0.00 44.87 3.51
1356 1406 1.203758 TGTTTCGATCAGCTAGCCGAA 59.796 47.619 18.56 18.56 38.95 4.30
1357 1407 0.815095 TGTTTCGATCAGCTAGCCGA 59.185 50.000 12.13 7.21 0.00 5.54
1358 1408 1.203928 CTGTTTCGATCAGCTAGCCG 58.796 55.000 12.13 8.00 0.00 5.52
1370 1459 3.055385 TCCTGATAAACTCCCCTGTTTCG 60.055 47.826 0.00 0.00 40.23 3.46
1373 1462 3.256704 TGTCCTGATAAACTCCCCTGTT 58.743 45.455 0.00 0.00 0.00 3.16
1375 1464 2.171448 CCTGTCCTGATAAACTCCCCTG 59.829 54.545 0.00 0.00 0.00 4.45
1376 1465 2.045885 TCCTGTCCTGATAAACTCCCCT 59.954 50.000 0.00 0.00 0.00 4.79
1378 1467 3.108376 ACTCCTGTCCTGATAAACTCCC 58.892 50.000 0.00 0.00 0.00 4.30
1389 1478 4.161102 AGTAACTTGCTAACTCCTGTCCT 58.839 43.478 0.00 0.00 0.00 3.85
1393 1482 5.542779 ACTTGAGTAACTTGCTAACTCCTG 58.457 41.667 0.00 0.00 39.10 3.86
1398 1487 9.382244 CAACAATAACTTGAGTAACTTGCTAAC 57.618 33.333 0.00 0.00 36.20 2.34
1399 1488 8.073768 GCAACAATAACTTGAGTAACTTGCTAA 58.926 33.333 0.00 0.00 35.58 3.09
1401 1490 6.438763 GCAACAATAACTTGAGTAACTTGCT 58.561 36.000 0.00 0.00 35.58 3.91
1402 1491 5.339611 CGCAACAATAACTTGAGTAACTTGC 59.660 40.000 0.00 0.00 35.33 4.01
1403 1492 5.339611 GCGCAACAATAACTTGAGTAACTTG 59.660 40.000 0.30 0.00 36.20 3.16
1405 1494 4.513692 TGCGCAACAATAACTTGAGTAACT 59.486 37.500 8.16 0.00 36.20 2.24
1406 1495 4.611366 GTGCGCAACAATAACTTGAGTAAC 59.389 41.667 14.00 0.00 36.20 2.50
1407 1496 4.513692 AGTGCGCAACAATAACTTGAGTAA 59.486 37.500 14.00 0.00 36.20 2.24
1409 1498 2.878406 AGTGCGCAACAATAACTTGAGT 59.122 40.909 14.00 0.00 36.20 3.41
1412 1501 2.720578 CACAGTGCGCAACAATAACTTG 59.279 45.455 14.00 2.23 38.39 3.16
1418 1507 1.527034 AGATCACAGTGCGCAACAAT 58.473 45.000 14.00 1.06 0.00 2.71
1419 1508 2.162319 TAGATCACAGTGCGCAACAA 57.838 45.000 14.00 0.00 0.00 2.83
1422 1511 2.766313 AGTTTAGATCACAGTGCGCAA 58.234 42.857 14.00 0.00 0.00 4.85
1439 1545 3.186119 CATGTTTTTGCCGTGTCAAGTT 58.814 40.909 0.00 0.00 0.00 2.66
1440 1546 2.808244 CATGTTTTTGCCGTGTCAAGT 58.192 42.857 0.00 0.00 0.00 3.16
1441 1547 1.522258 GCATGTTTTTGCCGTGTCAAG 59.478 47.619 0.00 0.00 36.60 3.02
1444 1550 1.851658 AAGCATGTTTTTGCCGTGTC 58.148 45.000 0.00 0.00 43.83 3.67
1479 1585 6.090898 GTCATATGATCCTTGGCGTACATTAC 59.909 42.308 9.02 0.00 0.00 1.89
1480 1586 6.014584 AGTCATATGATCCTTGGCGTACATTA 60.015 38.462 9.02 0.00 0.00 1.90
1498 1604 2.108976 CACGCCGGCCAGTCATAT 59.891 61.111 23.46 0.00 0.00 1.78
1517 1624 1.350193 CACGAAGGAACACTGGATCG 58.650 55.000 0.00 0.00 36.45 3.69
1519 1626 0.687354 AGCACGAAGGAACACTGGAT 59.313 50.000 0.00 0.00 0.00 3.41
1540 1647 1.512734 GCAATGCAAGGAAGTCGCG 60.513 57.895 0.00 0.00 0.00 5.87
1543 1650 2.422276 AAACGCAATGCAAGGAAGTC 57.578 45.000 5.91 0.00 0.00 3.01
1545 1652 2.472816 ACAAAACGCAATGCAAGGAAG 58.527 42.857 5.91 0.00 0.00 3.46
1547 1654 2.593346 AACAAAACGCAATGCAAGGA 57.407 40.000 5.91 0.00 0.00 3.36
1552 1659 5.574815 ACAGAATAAACAAAACGCAATGC 57.425 34.783 0.00 0.00 0.00 3.56
1555 1662 8.132362 AGTCATTACAGAATAAACAAAACGCAA 58.868 29.630 0.00 0.00 0.00 4.85
1575 1682 3.695060 CACCTCCGTACTCAGTAGTCATT 59.305 47.826 0.00 0.00 37.15 2.57
1587 1694 4.743644 GTCATGTATTTAGCACCTCCGTAC 59.256 45.833 0.00 0.00 0.00 3.67
1588 1695 4.403113 TGTCATGTATTTAGCACCTCCGTA 59.597 41.667 0.00 0.00 0.00 4.02
1589 1696 3.196901 TGTCATGTATTTAGCACCTCCGT 59.803 43.478 0.00 0.00 0.00 4.69
1590 1697 3.792401 TGTCATGTATTTAGCACCTCCG 58.208 45.455 0.00 0.00 0.00 4.63
1591 1698 3.561725 GCTGTCATGTATTTAGCACCTCC 59.438 47.826 0.00 0.00 34.64 4.30
1592 1699 4.191544 TGCTGTCATGTATTTAGCACCTC 58.808 43.478 0.00 0.00 39.26 3.85
1593 1700 4.220693 TGCTGTCATGTATTTAGCACCT 57.779 40.909 0.00 0.00 39.26 4.00
1594 1701 4.852138 CATGCTGTCATGTATTTAGCACC 58.148 43.478 11.86 0.00 45.86 5.01
1669 1776 1.276415 GAACATCTGACAGAGAGCGC 58.724 55.000 11.52 0.00 32.80 5.92
1749 1864 7.280428 TGCCAAAATTGCAATTGTTAGGATATG 59.720 33.333 24.74 11.93 35.40 1.78
1761 1876 3.775261 AAGACCTGCCAAAATTGCAAT 57.225 38.095 5.99 5.99 38.46 3.56
1762 1877 3.118482 TCAAAGACCTGCCAAAATTGCAA 60.118 39.130 0.00 0.00 38.46 4.08
1794 1909 1.145803 GTAACGCTGACCACTTGGAC 58.854 55.000 1.14 0.00 38.94 4.02
1812 1927 5.944599 TGAATCTCGACTAGGACTTAACAGT 59.055 40.000 0.00 0.00 35.17 3.55
1956 2071 5.237779 TCTTTCGCTCAAAAGGTTTAACGAT 59.762 36.000 0.00 0.00 36.97 3.73
2006 2121 3.557054 CCTCCACTCGACCTGAATGAAAA 60.557 47.826 0.00 0.00 0.00 2.29
2020 2135 2.354259 CAGAAGCATGTTCCTCCACTC 58.646 52.381 0.00 0.00 0.00 3.51
2031 2146 1.741706 CCAGCTACAACCAGAAGCATG 59.258 52.381 0.00 0.00 38.75 4.06
2130 2245 0.539438 ACCCGGAATTTGCTGCTCAA 60.539 50.000 0.73 0.00 0.00 3.02
2144 2259 0.679640 TAAGCAAAGCCATGACCCGG 60.680 55.000 0.00 0.00 0.00 5.73
2184 2300 4.270325 GTGCGGAACCATAAAGTGATAGTC 59.730 45.833 0.00 0.00 0.00 2.59
2215 2331 9.341899 GGTGTCAACAAATATGTCATAGTTTTC 57.658 33.333 2.82 0.00 39.40 2.29
2221 2337 6.073447 AGGGGTGTCAACAAATATGTCATA 57.927 37.500 0.00 0.00 39.40 2.15
2238 2354 4.279671 TGCAACTTACAACATTTAGGGGTG 59.720 41.667 0.00 0.00 0.00 4.61
2239 2355 4.279922 GTGCAACTTACAACATTTAGGGGT 59.720 41.667 0.00 0.00 0.00 4.95
2259 2375 5.457148 CACTAGAACAACTCTATGATCGTGC 59.543 44.000 0.00 0.00 36.02 5.34
2281 2397 2.344441 CACATCCGTTCATGTACGACAC 59.656 50.000 24.23 0.00 43.99 3.67
2357 2482 5.643664 TCAAATCTGAAATTTCGCCAGATG 58.356 37.500 17.11 10.35 44.26 2.90
2439 2564 8.836268 ACAGCACAATGAAATGAAATAAATGT 57.164 26.923 0.00 0.00 0.00 2.71
2445 2574 8.714179 CATGTAAACAGCACAATGAAATGAAAT 58.286 29.630 0.00 0.00 0.00 2.17
2455 2584 5.395682 AATCAGCATGTAAACAGCACAAT 57.604 34.783 0.00 0.00 37.40 2.71
2471 2600 7.075741 ACAAGTTTAACACGTGATTAATCAGC 58.924 34.615 25.01 12.01 37.05 4.26
2522 2651 6.546428 TTGGGGAAAATGTAACTTGTGAAA 57.454 33.333 0.00 0.00 0.00 2.69
2551 2680 5.104569 TGGAAACTGGAAAGAGGCAATTTTT 60.105 36.000 0.00 0.00 0.00 1.94
2586 2715 0.950555 CGCTACACAGAGCTGCCAAA 60.951 55.000 0.00 0.00 40.51 3.28
2587 2716 1.374631 CGCTACACAGAGCTGCCAA 60.375 57.895 0.00 0.00 40.51 4.52
2710 2847 1.748122 AGGAGCGCTGCCTTTCATG 60.748 57.895 26.33 0.00 29.44 3.07
2781 2918 8.430063 GCAATGTTAAAGCACATATCATTATGC 58.570 33.333 0.00 0.00 39.09 3.14
2865 3002 4.322198 CCAAACTGCAGGCAGAAATACAAT 60.322 41.667 26.63 0.00 46.30 2.71
2866 3003 3.005684 CCAAACTGCAGGCAGAAATACAA 59.994 43.478 26.63 0.00 46.30 2.41
2957 3094 9.614792 AAATTAATGTATAACCACAGGAGAGAC 57.385 33.333 0.00 0.00 0.00 3.36
3015 3152 2.503061 CCACCTCGAGCCATCTGG 59.497 66.667 6.99 2.09 38.53 3.86
3665 3803 6.866248 GCATGTCATTTCATGATGCATTGATA 59.134 34.615 0.00 0.00 45.41 2.15
3773 3911 9.798994 GTAAACTTATCAGTCGAATCCTAAAGA 57.201 33.333 0.00 0.00 30.45 2.52
3808 3946 5.382303 CACTCCAGCTGTTACAATTAAACG 58.618 41.667 13.81 0.00 0.00 3.60
3902 4040 3.945285 CCACCACCAACTATGTACCAATC 59.055 47.826 0.00 0.00 0.00 2.67
4279 4418 3.278574 TGTGGTTGAACAAAGAGTGAGG 58.721 45.455 0.00 0.00 0.00 3.86
4518 4659 7.712204 ACAAAGAGTACTGAAAAGGGAAAAA 57.288 32.000 0.00 0.00 0.00 1.94
4599 4748 6.000219 ACAAAGATCTGCAGTAGTGTCATTT 59.000 36.000 14.67 2.64 0.00 2.32
4719 4868 8.261492 AGTTTTCTCATCAGTAGCAGTTATTG 57.739 34.615 0.00 0.00 0.00 1.90
4808 4957 3.062504 GCATCAATTTCGGCAACCATTTC 59.937 43.478 0.00 0.00 0.00 2.17
4928 5077 7.706179 ACAGTTTACCTTTGTCAATTCATTGTG 59.294 33.333 0.00 0.00 38.84 3.33
4939 5088 6.575162 ATGGAATGACAGTTTACCTTTGTC 57.425 37.500 0.00 0.00 41.15 3.18
5008 5159 8.620416 TGGAAATTCGTATGGTGAATAAGAATG 58.380 33.333 7.11 0.00 44.34 2.67
5132 5286 7.590689 GTCCACGCTCAGAACTAATTATAGTAC 59.409 40.741 0.00 0.00 41.57 2.73
5133 5287 7.283807 TGTCCACGCTCAGAACTAATTATAGTA 59.716 37.037 0.00 0.00 41.57 1.82
5153 5307 7.029563 GGAGAATTGAAAATACATGTGTCCAC 58.970 38.462 9.11 0.00 0.00 4.02
5156 5310 9.696917 AAAAGGAGAATTGAAAATACATGTGTC 57.303 29.630 9.11 1.26 0.00 3.67
5173 5327 5.622914 GCAATCAGCAGCATAAAAAGGAGAA 60.623 40.000 0.00 0.00 44.79 2.87
5265 5419 6.433847 TCCAGTTCATTTTCCAGAGAACTA 57.566 37.500 6.37 0.00 46.34 2.24
5277 5431 2.298163 CTGCAAGGCTTCCAGTTCATTT 59.702 45.455 10.10 0.00 0.00 2.32
5316 5470 3.139077 AGAAGTCGTCATGGTTTGTTCC 58.861 45.455 0.00 0.00 0.00 3.62
5352 5506 3.953775 CACTTCCACACGCCCCCT 61.954 66.667 0.00 0.00 0.00 4.79
5361 5515 1.423794 TTCCTCCCACCCACTTCCAC 61.424 60.000 0.00 0.00 0.00 4.02
5481 5636 4.736793 CGCAAAATGATAACCATGAAGCTC 59.263 41.667 0.00 0.00 35.24 4.09
5508 5663 7.415653 GGGATCACATCAACCTCTACAAAATTC 60.416 40.741 0.00 0.00 0.00 2.17
5516 5672 2.435805 GCAGGGATCACATCAACCTCTA 59.564 50.000 0.00 0.00 0.00 2.43
5592 5764 7.552458 TCACAAATCATTCTACATTACGCAT 57.448 32.000 0.00 0.00 0.00 4.73
5611 5783 7.353414 TCACCCTTTAATGTTCATTTCACAA 57.647 32.000 3.36 0.00 0.00 3.33
5672 5849 5.836821 AGTTTGTTTCCTGGTTCTCTTTC 57.163 39.130 0.00 0.00 0.00 2.62
5793 5970 4.703093 ACAAGAAACTGTTTCGGGAAGAAA 59.297 37.500 23.24 0.00 45.76 2.52
5834 6011 0.813821 GCCTCCAGGATTTTGCTGTC 59.186 55.000 0.00 0.00 33.66 3.51
5853 6044 9.294030 GCTTTGGAATACATTTACATTTCTCTG 57.706 33.333 0.00 0.00 0.00 3.35
5872 6063 1.269448 GAAACGGAATGCAGCTTTGGA 59.731 47.619 0.00 0.00 0.00 3.53
5888 6079 4.759516 ACACGGGTCAAATACATGAAAC 57.240 40.909 0.00 0.00 0.00 2.78
5895 6086 7.781548 AATCAGTATAACACGGGTCAAATAC 57.218 36.000 0.00 0.00 0.00 1.89
5904 6095 5.295152 GGTAGGGAAATCAGTATAACACGG 58.705 45.833 0.00 0.00 0.00 4.94
5905 6096 4.980434 CGGTAGGGAAATCAGTATAACACG 59.020 45.833 0.00 0.00 0.00 4.49
5907 6098 6.154877 TCAACGGTAGGGAAATCAGTATAACA 59.845 38.462 0.00 0.00 0.00 2.41
6054 6246 8.992073 TGTAAAAGGAGAACCGATAGTTTTTAC 58.008 33.333 8.70 8.70 39.40 2.01
6083 6275 4.754322 CCATACGAAAAATTGAAAGGGGG 58.246 43.478 0.00 0.00 0.00 5.40
6100 6292 7.085052 TGTACTATCACATATCGAGCCATAC 57.915 40.000 0.00 0.00 0.00 2.39
6130 6322 2.457366 AAGAGTTACAAGTGCTCCCG 57.543 50.000 0.00 0.00 0.00 5.14
6162 6354 1.004044 CTGTCTTGAAGGACCTGGCAT 59.996 52.381 0.00 0.00 35.54 4.40
6163 6355 0.397941 CTGTCTTGAAGGACCTGGCA 59.602 55.000 0.00 0.00 35.54 4.92
6250 6442 3.003173 TTGAGGAGGAGCCCGGTG 61.003 66.667 0.00 0.00 37.37 4.94
6357 6556 1.200519 ATGTCTAAACAGGCCGCCTA 58.799 50.000 12.83 0.00 39.20 3.93
6358 6557 0.328258 AATGTCTAAACAGGCCGCCT 59.672 50.000 5.94 5.94 39.20 5.52
6359 6558 0.451783 CAATGTCTAAACAGGCCGCC 59.548 55.000 0.00 0.00 39.20 6.13
6360 6559 0.179163 GCAATGTCTAAACAGGCCGC 60.179 55.000 0.00 0.00 39.20 6.53
6361 6560 1.135689 GTGCAATGTCTAAACAGGCCG 60.136 52.381 0.00 0.00 39.20 6.13
6362 6561 1.885887 TGTGCAATGTCTAAACAGGCC 59.114 47.619 0.00 0.00 39.20 5.19
6363 6562 2.669391 GCTGTGCAATGTCTAAACAGGC 60.669 50.000 0.00 0.00 39.20 4.85
6364 6563 2.553602 TGCTGTGCAATGTCTAAACAGG 59.446 45.455 0.00 0.00 38.90 4.00
6365 6564 3.902261 TGCTGTGCAATGTCTAAACAG 57.098 42.857 0.00 0.00 40.93 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.