Multiple sequence alignment - TraesCS6B01G450600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G450600 chr6B 100.000 3234 0 0 1 3234 709529197 709532430 0.000000e+00 5973
1 TraesCS6B01G450600 chr6D 92.785 2966 153 32 309 3234 465075324 465072380 0.000000e+00 4235
2 TraesCS6B01G450600 chr6A 87.150 2996 240 69 309 3234 611716416 611713496 0.000000e+00 3265
3 TraesCS6B01G450600 chr2B 93.243 296 10 5 1 289 639283572 639283864 8.290000e-116 427
4 TraesCS6B01G450600 chr7A 96.887 257 3 1 1 252 450002716 450002972 2.980000e-115 425
5 TraesCS6B01G450600 chr7A 97.211 251 2 1 1 246 209123956 209123706 1.390000e-113 420
6 TraesCS6B01G450600 chr3B 95.219 251 7 1 1 246 238394491 238394241 3.020000e-105 392
7 TraesCS6B01G450600 chr2A 85.000 140 18 1 986 1122 86435292 86435431 4.350000e-29 139
8 TraesCS6B01G450600 chr1A 83.448 145 19 3 982 1122 138785249 138785106 2.620000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G450600 chr6B 709529197 709532430 3233 False 5973 5973 100.000 1 3234 1 chr6B.!!$F1 3233
1 TraesCS6B01G450600 chr6D 465072380 465075324 2944 True 4235 4235 92.785 309 3234 1 chr6D.!!$R1 2925
2 TraesCS6B01G450600 chr6A 611713496 611716416 2920 True 3265 3265 87.150 309 3234 1 chr6A.!!$R1 2925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.105964 CACTGTTGGTGGAGACGGAA 59.894 55.0 0.00 0.0 41.9 4.30 F
141 142 0.250553 TTTTTCTCACCCGCACCGAT 60.251 50.0 0.00 0.0 0.0 4.18 F
237 238 0.252197 GGACGAAGCCATACCTGGTT 59.748 55.0 3.84 0.0 45.1 3.67 F
2090 2139 0.179163 GCAATGTCTAAACAGGCCGC 60.179 55.0 0.00 0.0 39.2 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1880 0.796312 GGTGTGAGTGTTATGTGCCG 59.204 55.000 0.00 0.00 0.00 5.69 R
2054 2103 1.807000 TTGCACAGCAAAAGCATGGTG 60.807 47.619 12.82 12.82 45.96 4.17 R
2152 2208 0.519175 CGACTGATTTTGCGAAGGCG 60.519 55.000 0.00 0.00 44.10 5.52 R
3134 3230 2.540361 GCAGCAACAAATATCTCAGGCG 60.540 50.000 0.00 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 3.357079 GGCGCACTGTTGGTGGAG 61.357 66.667 10.83 0.00 45.44 3.86
88 89 2.280797 GCGCACTGTTGGTGGAGA 60.281 61.111 0.30 0.00 45.44 3.71
89 90 2.607892 GCGCACTGTTGGTGGAGAC 61.608 63.158 0.30 0.00 45.44 3.36
90 91 2.310233 CGCACTGTTGGTGGAGACG 61.310 63.158 0.00 0.00 45.44 4.18
91 92 1.961277 GCACTGTTGGTGGAGACGG 60.961 63.158 0.00 0.00 45.44 4.79
92 93 1.745890 CACTGTTGGTGGAGACGGA 59.254 57.895 0.00 0.00 41.90 4.69
93 94 0.105964 CACTGTTGGTGGAGACGGAA 59.894 55.000 0.00 0.00 41.90 4.30
94 95 0.834612 ACTGTTGGTGGAGACGGAAA 59.165 50.000 0.00 0.00 0.00 3.13
95 96 1.202651 ACTGTTGGTGGAGACGGAAAG 60.203 52.381 0.00 0.00 0.00 2.62
96 97 0.834612 TGTTGGTGGAGACGGAAAGT 59.165 50.000 0.00 0.00 0.00 2.66
97 98 2.036733 CTGTTGGTGGAGACGGAAAGTA 59.963 50.000 0.00 0.00 0.00 2.24
98 99 2.435069 TGTTGGTGGAGACGGAAAGTAA 59.565 45.455 0.00 0.00 0.00 2.24
99 100 3.064931 GTTGGTGGAGACGGAAAGTAAG 58.935 50.000 0.00 0.00 0.00 2.34
100 101 1.621814 TGGTGGAGACGGAAAGTAAGG 59.378 52.381 0.00 0.00 0.00 2.69
101 102 1.622312 GGTGGAGACGGAAAGTAAGGT 59.378 52.381 0.00 0.00 0.00 3.50
102 103 2.353505 GGTGGAGACGGAAAGTAAGGTC 60.354 54.545 0.00 0.00 0.00 3.85
103 104 1.542915 TGGAGACGGAAAGTAAGGTCG 59.457 52.381 0.00 0.00 34.68 4.79
104 105 1.543358 GGAGACGGAAAGTAAGGTCGT 59.457 52.381 0.00 0.00 34.68 4.34
105 106 2.593257 GAGACGGAAAGTAAGGTCGTG 58.407 52.381 0.00 0.00 34.68 4.35
106 107 1.271656 AGACGGAAAGTAAGGTCGTGG 59.728 52.381 0.00 0.00 34.68 4.94
107 108 0.319405 ACGGAAAGTAAGGTCGTGGG 59.681 55.000 0.00 0.00 32.60 4.61
108 109 0.319405 CGGAAAGTAAGGTCGTGGGT 59.681 55.000 0.00 0.00 0.00 4.51
109 110 1.670967 CGGAAAGTAAGGTCGTGGGTC 60.671 57.143 0.00 0.00 0.00 4.46
110 111 1.622312 GGAAAGTAAGGTCGTGGGTCT 59.378 52.381 0.00 0.00 0.00 3.85
111 112 2.353505 GGAAAGTAAGGTCGTGGGTCTC 60.354 54.545 0.00 0.00 0.00 3.36
112 113 0.886563 AAGTAAGGTCGTGGGTCTCG 59.113 55.000 0.00 0.00 0.00 4.04
113 114 0.964358 AGTAAGGTCGTGGGTCTCGG 60.964 60.000 0.00 0.00 0.00 4.63
114 115 1.679977 TAAGGTCGTGGGTCTCGGG 60.680 63.158 0.00 0.00 0.00 5.14
115 116 2.430704 TAAGGTCGTGGGTCTCGGGT 62.431 60.000 0.00 0.00 0.00 5.28
116 117 3.756727 GGTCGTGGGTCTCGGGTC 61.757 72.222 0.00 0.00 0.00 4.46
117 118 4.112341 GTCGTGGGTCTCGGGTCG 62.112 72.222 0.00 0.00 0.00 4.79
118 119 4.648626 TCGTGGGTCTCGGGTCGT 62.649 66.667 0.00 0.00 0.00 4.34
119 120 3.677648 CGTGGGTCTCGGGTCGTT 61.678 66.667 0.00 0.00 0.00 3.85
120 121 2.739132 GTGGGTCTCGGGTCGTTT 59.261 61.111 0.00 0.00 0.00 3.60
121 122 1.070275 GTGGGTCTCGGGTCGTTTT 59.930 57.895 0.00 0.00 0.00 2.43
122 123 0.533531 GTGGGTCTCGGGTCGTTTTT 60.534 55.000 0.00 0.00 0.00 1.94
139 140 3.739167 TTTTTCTCACCCGCACCG 58.261 55.556 0.00 0.00 0.00 4.94
140 141 1.146485 TTTTTCTCACCCGCACCGA 59.854 52.632 0.00 0.00 0.00 4.69
141 142 0.250553 TTTTTCTCACCCGCACCGAT 60.251 50.000 0.00 0.00 0.00 4.18
142 143 0.250553 TTTTCTCACCCGCACCGATT 60.251 50.000 0.00 0.00 0.00 3.34
143 144 0.672401 TTTCTCACCCGCACCGATTC 60.672 55.000 0.00 0.00 0.00 2.52
144 145 2.829043 TTCTCACCCGCACCGATTCG 62.829 60.000 0.00 0.00 0.00 3.34
164 165 5.970317 TCGGCTCGAATGTAATAATAGGA 57.030 39.130 0.00 0.00 31.06 2.94
165 166 5.706916 TCGGCTCGAATGTAATAATAGGAC 58.293 41.667 0.00 0.00 31.06 3.85
166 167 5.475909 TCGGCTCGAATGTAATAATAGGACT 59.524 40.000 0.00 0.00 31.06 3.85
167 168 5.573282 CGGCTCGAATGTAATAATAGGACTG 59.427 44.000 0.00 0.00 0.00 3.51
168 169 5.348997 GGCTCGAATGTAATAATAGGACTGC 59.651 44.000 0.00 0.00 0.00 4.40
169 170 5.061064 GCTCGAATGTAATAATAGGACTGCG 59.939 44.000 0.00 0.00 0.00 5.18
170 171 5.466819 TCGAATGTAATAATAGGACTGCGG 58.533 41.667 0.00 0.00 0.00 5.69
171 172 4.625742 CGAATGTAATAATAGGACTGCGGG 59.374 45.833 0.00 0.00 0.00 6.13
172 173 5.548406 GAATGTAATAATAGGACTGCGGGT 58.452 41.667 0.00 0.00 0.00 5.28
173 174 5.562298 ATGTAATAATAGGACTGCGGGTT 57.438 39.130 0.00 0.00 0.00 4.11
174 175 4.699637 TGTAATAATAGGACTGCGGGTTG 58.300 43.478 0.00 0.00 0.00 3.77
175 176 4.406326 TGTAATAATAGGACTGCGGGTTGA 59.594 41.667 0.00 0.00 0.00 3.18
176 177 4.706842 AATAATAGGACTGCGGGTTGAT 57.293 40.909 0.00 0.00 0.00 2.57
177 178 4.706842 ATAATAGGACTGCGGGTTGATT 57.293 40.909 0.00 0.00 0.00 2.57
178 179 3.366052 AATAGGACTGCGGGTTGATTT 57.634 42.857 0.00 0.00 0.00 2.17
179 180 2.871096 TAGGACTGCGGGTTGATTTT 57.129 45.000 0.00 0.00 0.00 1.82
180 181 1.247567 AGGACTGCGGGTTGATTTTG 58.752 50.000 0.00 0.00 0.00 2.44
181 182 1.202879 AGGACTGCGGGTTGATTTTGA 60.203 47.619 0.00 0.00 0.00 2.69
182 183 1.611491 GGACTGCGGGTTGATTTTGAA 59.389 47.619 0.00 0.00 0.00 2.69
183 184 2.351738 GGACTGCGGGTTGATTTTGAAG 60.352 50.000 0.00 0.00 0.00 3.02
184 185 2.552315 GACTGCGGGTTGATTTTGAAGA 59.448 45.455 0.00 0.00 0.00 2.87
185 186 2.955660 ACTGCGGGTTGATTTTGAAGAA 59.044 40.909 0.00 0.00 0.00 2.52
186 187 3.383185 ACTGCGGGTTGATTTTGAAGAAA 59.617 39.130 0.00 0.00 0.00 2.52
187 188 3.712187 TGCGGGTTGATTTTGAAGAAAC 58.288 40.909 0.00 0.00 0.00 2.78
188 189 3.131223 TGCGGGTTGATTTTGAAGAAACA 59.869 39.130 0.00 0.00 0.00 2.83
189 190 3.489416 GCGGGTTGATTTTGAAGAAACAC 59.511 43.478 0.00 0.00 0.00 3.32
190 191 3.728718 CGGGTTGATTTTGAAGAAACACG 59.271 43.478 0.00 0.00 40.72 4.49
191 192 4.048504 GGGTTGATTTTGAAGAAACACGG 58.951 43.478 0.00 0.00 0.00 4.94
192 193 4.048504 GGTTGATTTTGAAGAAACACGGG 58.951 43.478 0.00 0.00 0.00 5.28
193 194 4.048504 GTTGATTTTGAAGAAACACGGGG 58.951 43.478 0.00 0.00 0.00 5.73
194 195 3.556999 TGATTTTGAAGAAACACGGGGA 58.443 40.909 0.00 0.00 0.00 4.81
195 196 3.316868 TGATTTTGAAGAAACACGGGGAC 59.683 43.478 0.00 0.00 0.00 4.46
196 197 2.721425 TTTGAAGAAACACGGGGACT 57.279 45.000 0.00 0.00 0.00 3.85
197 198 2.721425 TTGAAGAAACACGGGGACTT 57.279 45.000 0.00 0.00 0.00 3.01
198 199 2.721425 TGAAGAAACACGGGGACTTT 57.279 45.000 0.00 0.00 0.00 2.66
199 200 3.007473 TGAAGAAACACGGGGACTTTT 57.993 42.857 0.00 0.00 0.00 2.27
200 201 3.358118 TGAAGAAACACGGGGACTTTTT 58.642 40.909 0.00 0.00 0.00 1.94
217 218 2.570442 TTTTGCAAAACCTCCACGAC 57.430 45.000 20.46 0.00 0.00 4.34
218 219 0.378962 TTTGCAAAACCTCCACGACG 59.621 50.000 10.02 0.00 0.00 5.12
219 220 1.440938 TTGCAAAACCTCCACGACGG 61.441 55.000 0.00 0.00 0.00 4.79
220 221 1.595929 GCAAAACCTCCACGACGGA 60.596 57.895 0.00 0.00 43.61 4.69
221 222 1.838568 GCAAAACCTCCACGACGGAC 61.839 60.000 0.00 0.00 39.64 4.79
223 224 1.737355 AAAACCTCCACGACGGACGA 61.737 55.000 6.90 0.00 45.77 4.20
224 225 1.737355 AAACCTCCACGACGGACGAA 61.737 55.000 6.90 0.00 45.77 3.85
225 226 2.138656 AACCTCCACGACGGACGAAG 62.139 60.000 6.90 1.48 45.77 3.79
226 227 2.504244 CTCCACGACGGACGAAGC 60.504 66.667 6.90 0.00 45.77 3.86
227 228 3.966026 CTCCACGACGGACGAAGCC 62.966 68.421 6.90 0.00 45.77 4.35
228 229 4.351938 CCACGACGGACGAAGCCA 62.352 66.667 6.90 0.00 45.77 4.75
229 230 2.126071 CACGACGGACGAAGCCAT 60.126 61.111 6.90 0.00 45.77 4.40
230 231 1.138036 CACGACGGACGAAGCCATA 59.862 57.895 6.90 0.00 45.77 2.74
231 232 1.138047 CACGACGGACGAAGCCATAC 61.138 60.000 6.90 0.00 45.77 2.39
232 233 1.588139 CGACGGACGAAGCCATACC 60.588 63.158 0.00 0.00 45.77 2.73
233 234 1.814527 GACGGACGAAGCCATACCT 59.185 57.895 0.00 0.00 0.00 3.08
234 235 0.527817 GACGGACGAAGCCATACCTG 60.528 60.000 0.00 0.00 0.00 4.00
235 236 1.227263 CGGACGAAGCCATACCTGG 60.227 63.158 0.00 0.00 46.17 4.45
236 237 1.905512 GGACGAAGCCATACCTGGT 59.094 57.895 4.05 4.05 45.10 4.00
237 238 0.252197 GGACGAAGCCATACCTGGTT 59.748 55.000 3.84 0.00 45.10 3.67
239 240 2.093341 GGACGAAGCCATACCTGGTTTA 60.093 50.000 3.84 0.00 45.03 2.01
240 241 3.433173 GGACGAAGCCATACCTGGTTTAT 60.433 47.826 3.84 0.00 45.03 1.40
241 242 4.196971 GACGAAGCCATACCTGGTTTATT 58.803 43.478 3.84 0.00 45.03 1.40
242 243 5.362105 ACGAAGCCATACCTGGTTTATTA 57.638 39.130 3.84 0.00 45.03 0.98
243 244 5.365619 ACGAAGCCATACCTGGTTTATTAG 58.634 41.667 3.84 0.00 45.03 1.73
244 245 5.104652 ACGAAGCCATACCTGGTTTATTAGT 60.105 40.000 3.84 0.00 45.03 2.24
245 246 6.098695 ACGAAGCCATACCTGGTTTATTAGTA 59.901 38.462 3.84 0.00 45.03 1.82
246 247 7.159372 CGAAGCCATACCTGGTTTATTAGTAT 58.841 38.462 3.84 0.00 45.03 2.12
247 248 8.308931 CGAAGCCATACCTGGTTTATTAGTATA 58.691 37.037 3.84 0.00 45.03 1.47
370 374 3.827302 ACACAAGAGTAGTCAGTAGTGGG 59.173 47.826 0.00 0.00 0.00 4.61
371 375 2.826725 ACAAGAGTAGTCAGTAGTGGGC 59.173 50.000 0.00 0.00 0.00 5.36
378 382 0.322546 GTCAGTAGTGGGCCCAAAGG 60.323 60.000 30.64 14.93 0.00 3.11
380 384 0.322546 CAGTAGTGGGCCCAAAGGAC 60.323 60.000 30.64 21.26 42.67 3.85
533 537 3.419759 CCAAAACCGAGCCGACCG 61.420 66.667 0.00 0.00 0.00 4.79
554 558 3.360758 CGCGCTTTTAAAACTCACCAATC 59.639 43.478 5.56 0.00 0.00 2.67
582 586 1.153706 GATACACCCCACACGGACG 60.154 63.158 0.00 0.00 0.00 4.79
1012 1028 1.508545 CTGCTCATGTCGAGGTCGT 59.491 57.895 0.00 0.00 42.55 4.34
1026 1042 4.648626 TCGTCGGACCCACGGACT 62.649 66.667 11.88 0.00 43.54 3.85
1135 1151 3.680786 TGGTCCACTGCTCGTCGG 61.681 66.667 0.00 0.00 0.00 4.79
1142 1158 4.717629 CTGCTCGTCGGCGACCAA 62.718 66.667 31.86 20.03 42.81 3.67
1409 1425 4.767255 AGCGCTCTTTGCTCCCGG 62.767 66.667 2.64 0.00 38.62 5.73
1518 1534 2.362503 TCGTGGGTCGATCTGGCT 60.363 61.111 0.00 0.00 44.01 4.75
1524 1540 1.133482 TGGGTCGATCTGGCTGAGATA 60.133 52.381 0.00 0.00 41.91 1.98
1535 1551 3.274455 CTGAGATATCCGGCGCGCT 62.274 63.158 32.29 14.07 0.00 5.92
1548 1564 4.166888 GCGCTGGAGATGGGAGCA 62.167 66.667 0.00 0.00 32.70 4.26
1663 1681 3.791586 GCCCTGAGCCCCTGACTC 61.792 72.222 0.00 0.00 34.35 3.36
1671 1689 2.024369 TGAGCCCCTGACTCTATACACA 60.024 50.000 0.00 0.00 35.12 3.72
1672 1690 3.235200 GAGCCCCTGACTCTATACACAT 58.765 50.000 0.00 0.00 0.00 3.21
1673 1691 3.643792 GAGCCCCTGACTCTATACACATT 59.356 47.826 0.00 0.00 0.00 2.71
1674 1692 4.816126 AGCCCCTGACTCTATACACATTA 58.184 43.478 0.00 0.00 0.00 1.90
1675 1693 4.589374 AGCCCCTGACTCTATACACATTAC 59.411 45.833 0.00 0.00 0.00 1.89
1676 1694 4.262506 GCCCCTGACTCTATACACATTACC 60.263 50.000 0.00 0.00 0.00 2.85
1677 1695 4.899457 CCCCTGACTCTATACACATTACCA 59.101 45.833 0.00 0.00 0.00 3.25
1678 1696 5.365605 CCCCTGACTCTATACACATTACCAA 59.634 44.000 0.00 0.00 0.00 3.67
1679 1697 6.043243 CCCCTGACTCTATACACATTACCAAT 59.957 42.308 0.00 0.00 0.00 3.16
1680 1698 7.420214 CCCCTGACTCTATACACATTACCAATT 60.420 40.741 0.00 0.00 0.00 2.32
1688 1706 3.988819 ACACATTACCAATTTGCCACAC 58.011 40.909 0.00 0.00 0.00 3.82
1695 1713 2.037511 ACCAATTTGCCACACAATCCAG 59.962 45.455 0.00 0.00 38.31 3.86
1699 1717 2.655090 TTGCCACACAATCCAGAGAA 57.345 45.000 0.00 0.00 31.73 2.87
1700 1718 2.885135 TGCCACACAATCCAGAGAAT 57.115 45.000 0.00 0.00 0.00 2.40
1701 1719 3.159213 TGCCACACAATCCAGAGAATT 57.841 42.857 0.00 0.00 0.00 2.17
1702 1720 4.299586 TGCCACACAATCCAGAGAATTA 57.700 40.909 0.00 0.00 0.00 1.40
1703 1721 4.009675 TGCCACACAATCCAGAGAATTAC 58.990 43.478 0.00 0.00 0.00 1.89
1764 1783 2.164422 GCTGAAGGGCAAAATACCAGAC 59.836 50.000 0.00 0.00 0.00 3.51
1835 1854 9.553064 TTTATGCACTGAACAAACCAAATTTAT 57.447 25.926 0.00 0.00 0.00 1.40
1881 1912 2.158900 ACACTCACACCTGAACCAGAAG 60.159 50.000 0.00 0.00 32.44 2.85
1882 1913 2.119495 ACTCACACCTGAACCAGAAGT 58.881 47.619 0.00 0.00 32.44 3.01
1938 1983 1.081892 CAGTCGCCTGAACCAATGAG 58.918 55.000 0.00 0.00 41.50 2.90
1967 2014 5.836024 TGTATACCAACTCCAGAAAGGTT 57.164 39.130 0.00 0.00 39.02 3.50
1997 2045 3.356529 AACAAGAGCTAACATCCCCAG 57.643 47.619 0.00 0.00 0.00 4.45
2014 2062 4.169856 TCCCCAGCCAATTATATTTCCAGT 59.830 41.667 0.00 0.00 0.00 4.00
2088 2137 1.885887 TGTGCAATGTCTAAACAGGCC 59.114 47.619 0.00 0.00 39.20 5.19
2089 2138 1.135689 GTGCAATGTCTAAACAGGCCG 60.136 52.381 0.00 0.00 39.20 6.13
2090 2139 0.179163 GCAATGTCTAAACAGGCCGC 60.179 55.000 0.00 0.00 39.20 6.53
2091 2140 0.451783 CAATGTCTAAACAGGCCGCC 59.548 55.000 0.00 0.00 39.20 6.13
2092 2141 0.328258 AATGTCTAAACAGGCCGCCT 59.672 50.000 5.94 5.94 39.20 5.52
2093 2142 1.200519 ATGTCTAAACAGGCCGCCTA 58.799 50.000 12.83 0.00 39.20 3.93
2200 2256 3.003173 TTGAGGAGGAGCCCGGTG 61.003 66.667 0.00 0.00 37.37 4.94
2287 2343 0.397941 CTGTCTTGAAGGACCTGGCA 59.602 55.000 0.00 0.00 35.54 4.92
2288 2344 1.004044 CTGTCTTGAAGGACCTGGCAT 59.996 52.381 0.00 0.00 35.54 4.40
2320 2376 2.457366 AAGAGTTACAAGTGCTCCCG 57.543 50.000 0.00 0.00 0.00 5.14
2350 2406 7.085052 TGTACTATCACATATCGAGCCATAC 57.915 40.000 0.00 0.00 0.00 2.39
2367 2423 4.754322 CCATACGAAAAATTGAAAGGGGG 58.246 43.478 0.00 0.00 0.00 5.40
2396 2452 8.992073 TGTAAAAGGAGAACCGATAGTTTTTAC 58.008 33.333 8.70 8.70 39.40 2.01
2543 2600 6.154877 TCAACGGTAGGGAAATCAGTATAACA 59.845 38.462 0.00 0.00 0.00 2.41
2545 2602 4.980434 CGGTAGGGAAATCAGTATAACACG 59.020 45.833 0.00 0.00 0.00 4.49
2546 2603 5.295152 GGTAGGGAAATCAGTATAACACGG 58.705 45.833 0.00 0.00 0.00 4.94
2555 2612 7.781548 AATCAGTATAACACGGGTCAAATAC 57.218 36.000 0.00 0.00 0.00 1.89
2562 2619 4.759516 ACACGGGTCAAATACATGAAAC 57.240 40.909 0.00 0.00 0.00 2.78
2578 2635 1.269448 GAAACGGAATGCAGCTTTGGA 59.731 47.619 0.00 0.00 0.00 3.53
2597 2654 9.294030 GCTTTGGAATACATTTACATTTCTCTG 57.706 33.333 0.00 0.00 0.00 3.35
2616 2687 0.813821 GCCTCCAGGATTTTGCTGTC 59.186 55.000 0.00 0.00 33.66 3.51
2657 2728 4.703093 ACAAGAAACTGTTTCGGGAAGAAA 59.297 37.500 23.24 0.00 45.76 2.52
2778 2849 5.836821 AGTTTGTTTCCTGGTTCTCTTTC 57.163 39.130 0.00 0.00 0.00 2.62
2839 2915 7.353414 TCACCCTTTAATGTTCATTTCACAA 57.647 32.000 3.36 0.00 0.00 3.33
2858 2934 7.552458 TCACAAATCATTCTACATTACGCAT 57.448 32.000 0.00 0.00 0.00 4.73
2934 3028 2.435805 GCAGGGATCACATCAACCTCTA 59.564 50.000 0.00 0.00 0.00 2.43
2942 3037 7.415653 GGGATCACATCAACCTCTACAAAATTC 60.416 40.741 0.00 0.00 0.00 2.17
2969 3064 4.736793 CGCAAAATGATAACCATGAAGCTC 59.263 41.667 0.00 0.00 35.24 4.09
3089 3185 1.423794 TTCCTCCCACCCACTTCCAC 61.424 60.000 0.00 0.00 0.00 4.02
3098 3194 3.953775 CACTTCCACACGCCCCCT 61.954 66.667 0.00 0.00 0.00 4.79
3134 3230 3.139077 AGAAGTCGTCATGGTTTGTTCC 58.861 45.455 0.00 0.00 0.00 3.62
3173 3269 2.298163 CTGCAAGGCTTCCAGTTCATTT 59.702 45.455 10.10 0.00 0.00 2.32
3185 3281 6.433847 TCCAGTTCATTTTCCAGAGAACTA 57.566 37.500 6.37 0.00 46.34 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.357079 CTCCACCAACAGTGCGCC 61.357 66.667 4.18 0.00 45.83 6.53
71 72 2.280797 TCTCCACCAACAGTGCGC 60.281 61.111 0.00 0.00 45.83 6.09
72 73 2.310233 CGTCTCCACCAACAGTGCG 61.310 63.158 0.00 0.00 45.83 5.34
73 74 1.961277 CCGTCTCCACCAACAGTGC 60.961 63.158 0.00 0.00 45.83 4.40
74 75 0.105964 TTCCGTCTCCACCAACAGTG 59.894 55.000 0.00 0.00 46.83 3.66
75 76 0.834612 TTTCCGTCTCCACCAACAGT 59.165 50.000 0.00 0.00 0.00 3.55
76 77 1.202651 ACTTTCCGTCTCCACCAACAG 60.203 52.381 0.00 0.00 0.00 3.16
77 78 0.834612 ACTTTCCGTCTCCACCAACA 59.165 50.000 0.00 0.00 0.00 3.33
78 79 2.825861 TACTTTCCGTCTCCACCAAC 57.174 50.000 0.00 0.00 0.00 3.77
79 80 2.038033 CCTTACTTTCCGTCTCCACCAA 59.962 50.000 0.00 0.00 0.00 3.67
80 81 1.621814 CCTTACTTTCCGTCTCCACCA 59.378 52.381 0.00 0.00 0.00 4.17
81 82 1.622312 ACCTTACTTTCCGTCTCCACC 59.378 52.381 0.00 0.00 0.00 4.61
82 83 2.670509 CGACCTTACTTTCCGTCTCCAC 60.671 54.545 0.00 0.00 0.00 4.02
83 84 1.542915 CGACCTTACTTTCCGTCTCCA 59.457 52.381 0.00 0.00 0.00 3.86
84 85 1.543358 ACGACCTTACTTTCCGTCTCC 59.457 52.381 0.00 0.00 0.00 3.71
85 86 2.593257 CACGACCTTACTTTCCGTCTC 58.407 52.381 0.00 0.00 0.00 3.36
86 87 1.271656 CCACGACCTTACTTTCCGTCT 59.728 52.381 0.00 0.00 0.00 4.18
87 88 1.670967 CCCACGACCTTACTTTCCGTC 60.671 57.143 0.00 0.00 0.00 4.79
88 89 0.319405 CCCACGACCTTACTTTCCGT 59.681 55.000 0.00 0.00 0.00 4.69
89 90 0.319405 ACCCACGACCTTACTTTCCG 59.681 55.000 0.00 0.00 0.00 4.30
90 91 1.622312 AGACCCACGACCTTACTTTCC 59.378 52.381 0.00 0.00 0.00 3.13
91 92 2.670509 CGAGACCCACGACCTTACTTTC 60.671 54.545 0.00 0.00 0.00 2.62
92 93 1.271656 CGAGACCCACGACCTTACTTT 59.728 52.381 0.00 0.00 0.00 2.66
93 94 0.886563 CGAGACCCACGACCTTACTT 59.113 55.000 0.00 0.00 0.00 2.24
94 95 0.964358 CCGAGACCCACGACCTTACT 60.964 60.000 0.00 0.00 0.00 2.24
95 96 1.509923 CCGAGACCCACGACCTTAC 59.490 63.158 0.00 0.00 0.00 2.34
96 97 1.679977 CCCGAGACCCACGACCTTA 60.680 63.158 0.00 0.00 0.00 2.69
97 98 2.995574 CCCGAGACCCACGACCTT 60.996 66.667 0.00 0.00 0.00 3.50
98 99 4.296729 ACCCGAGACCCACGACCT 62.297 66.667 0.00 0.00 0.00 3.85
99 100 3.756727 GACCCGAGACCCACGACC 61.757 72.222 0.00 0.00 0.00 4.79
100 101 4.112341 CGACCCGAGACCCACGAC 62.112 72.222 0.00 0.00 0.00 4.34
101 102 4.648626 ACGACCCGAGACCCACGA 62.649 66.667 0.00 0.00 0.00 4.35
102 103 2.704342 AAAACGACCCGAGACCCACG 62.704 60.000 0.00 0.00 0.00 4.94
103 104 0.533531 AAAAACGACCCGAGACCCAC 60.534 55.000 0.00 0.00 0.00 4.61
104 105 1.831527 AAAAACGACCCGAGACCCA 59.168 52.632 0.00 0.00 0.00 4.51
105 106 4.785767 AAAAACGACCCGAGACCC 57.214 55.556 0.00 0.00 0.00 4.46
122 123 0.250553 ATCGGTGCGGGTGAGAAAAA 60.251 50.000 0.00 0.00 0.00 1.94
123 124 0.250553 AATCGGTGCGGGTGAGAAAA 60.251 50.000 0.00 0.00 0.00 2.29
124 125 0.672401 GAATCGGTGCGGGTGAGAAA 60.672 55.000 0.00 0.00 0.00 2.52
125 126 1.079405 GAATCGGTGCGGGTGAGAA 60.079 57.895 0.00 0.00 0.00 2.87
126 127 2.577059 GAATCGGTGCGGGTGAGA 59.423 61.111 0.00 0.00 0.00 3.27
127 128 2.885644 CGAATCGGTGCGGGTGAG 60.886 66.667 0.00 0.00 0.00 3.51
128 129 4.444838 CCGAATCGGTGCGGGTGA 62.445 66.667 14.46 0.00 43.67 4.02
142 143 5.475909 AGTCCTATTATTACATTCGAGCCGA 59.524 40.000 0.00 0.00 0.00 5.54
143 144 5.573282 CAGTCCTATTATTACATTCGAGCCG 59.427 44.000 0.00 0.00 0.00 5.52
144 145 5.348997 GCAGTCCTATTATTACATTCGAGCC 59.651 44.000 0.00 0.00 0.00 4.70
145 146 5.061064 CGCAGTCCTATTATTACATTCGAGC 59.939 44.000 0.00 0.00 0.00 5.03
146 147 5.573282 CCGCAGTCCTATTATTACATTCGAG 59.427 44.000 0.00 0.00 0.00 4.04
147 148 5.466819 CCGCAGTCCTATTATTACATTCGA 58.533 41.667 0.00 0.00 0.00 3.71
148 149 4.625742 CCCGCAGTCCTATTATTACATTCG 59.374 45.833 0.00 0.00 0.00 3.34
149 150 5.548406 ACCCGCAGTCCTATTATTACATTC 58.452 41.667 0.00 0.00 0.00 2.67
150 151 5.562298 ACCCGCAGTCCTATTATTACATT 57.438 39.130 0.00 0.00 0.00 2.71
151 152 5.071250 TCAACCCGCAGTCCTATTATTACAT 59.929 40.000 0.00 0.00 0.00 2.29
152 153 4.406326 TCAACCCGCAGTCCTATTATTACA 59.594 41.667 0.00 0.00 0.00 2.41
153 154 4.952460 TCAACCCGCAGTCCTATTATTAC 58.048 43.478 0.00 0.00 0.00 1.89
154 155 5.818678 ATCAACCCGCAGTCCTATTATTA 57.181 39.130 0.00 0.00 0.00 0.98
155 156 4.706842 ATCAACCCGCAGTCCTATTATT 57.293 40.909 0.00 0.00 0.00 1.40
156 157 4.706842 AATCAACCCGCAGTCCTATTAT 57.293 40.909 0.00 0.00 0.00 1.28
157 158 4.497291 AAATCAACCCGCAGTCCTATTA 57.503 40.909 0.00 0.00 0.00 0.98
158 159 3.366052 AAATCAACCCGCAGTCCTATT 57.634 42.857 0.00 0.00 0.00 1.73
159 160 3.016736 CAAAATCAACCCGCAGTCCTAT 58.983 45.455 0.00 0.00 0.00 2.57
160 161 2.039216 TCAAAATCAACCCGCAGTCCTA 59.961 45.455 0.00 0.00 0.00 2.94
161 162 1.202879 TCAAAATCAACCCGCAGTCCT 60.203 47.619 0.00 0.00 0.00 3.85
162 163 1.243902 TCAAAATCAACCCGCAGTCC 58.756 50.000 0.00 0.00 0.00 3.85
163 164 2.552315 TCTTCAAAATCAACCCGCAGTC 59.448 45.455 0.00 0.00 0.00 3.51
164 165 2.582052 TCTTCAAAATCAACCCGCAGT 58.418 42.857 0.00 0.00 0.00 4.40
165 166 3.641437 TTCTTCAAAATCAACCCGCAG 57.359 42.857 0.00 0.00 0.00 5.18
166 167 3.131223 TGTTTCTTCAAAATCAACCCGCA 59.869 39.130 0.00 0.00 0.00 5.69
167 168 3.489416 GTGTTTCTTCAAAATCAACCCGC 59.511 43.478 0.00 0.00 0.00 6.13
168 169 3.728718 CGTGTTTCTTCAAAATCAACCCG 59.271 43.478 0.00 0.00 0.00 5.28
169 170 4.048504 CCGTGTTTCTTCAAAATCAACCC 58.951 43.478 0.00 0.00 0.00 4.11
170 171 4.048504 CCCGTGTTTCTTCAAAATCAACC 58.951 43.478 0.00 0.00 0.00 3.77
171 172 4.048504 CCCCGTGTTTCTTCAAAATCAAC 58.951 43.478 0.00 0.00 0.00 3.18
172 173 3.954904 TCCCCGTGTTTCTTCAAAATCAA 59.045 39.130 0.00 0.00 0.00 2.57
173 174 3.316868 GTCCCCGTGTTTCTTCAAAATCA 59.683 43.478 0.00 0.00 0.00 2.57
174 175 3.568430 AGTCCCCGTGTTTCTTCAAAATC 59.432 43.478 0.00 0.00 0.00 2.17
175 176 3.562182 AGTCCCCGTGTTTCTTCAAAAT 58.438 40.909 0.00 0.00 0.00 1.82
176 177 3.007473 AGTCCCCGTGTTTCTTCAAAA 57.993 42.857 0.00 0.00 0.00 2.44
177 178 2.721425 AGTCCCCGTGTTTCTTCAAA 57.279 45.000 0.00 0.00 0.00 2.69
178 179 2.721425 AAGTCCCCGTGTTTCTTCAA 57.279 45.000 0.00 0.00 0.00 2.69
179 180 2.721425 AAAGTCCCCGTGTTTCTTCA 57.279 45.000 0.00 0.00 0.00 3.02
197 198 2.732597 CGTCGTGGAGGTTTTGCAAAAA 60.733 45.455 25.40 7.65 0.00 1.94
198 199 1.202200 CGTCGTGGAGGTTTTGCAAAA 60.202 47.619 20.46 20.46 0.00 2.44
199 200 0.378962 CGTCGTGGAGGTTTTGCAAA 59.621 50.000 8.05 8.05 0.00 3.68
200 201 1.440938 CCGTCGTGGAGGTTTTGCAA 61.441 55.000 0.00 0.00 42.00 4.08
201 202 1.890041 CCGTCGTGGAGGTTTTGCA 60.890 57.895 0.00 0.00 42.00 4.08
202 203 1.595929 TCCGTCGTGGAGGTTTTGC 60.596 57.895 0.00 0.00 43.74 3.68
203 204 4.762825 TCCGTCGTGGAGGTTTTG 57.237 55.556 0.00 0.00 43.74 2.44
211 212 2.274232 TATGGCTTCGTCCGTCGTGG 62.274 60.000 0.00 0.00 40.80 4.94
212 213 1.138036 TATGGCTTCGTCCGTCGTG 59.862 57.895 0.00 0.00 40.80 4.35
213 214 1.138247 GTATGGCTTCGTCCGTCGT 59.862 57.895 0.00 0.00 40.80 4.34
214 215 1.588139 GGTATGGCTTCGTCCGTCG 60.588 63.158 0.00 0.00 41.41 5.12
215 216 0.527817 CAGGTATGGCTTCGTCCGTC 60.528 60.000 0.00 0.00 0.00 4.79
216 217 1.515954 CAGGTATGGCTTCGTCCGT 59.484 57.895 0.00 0.00 0.00 4.69
217 218 1.227263 CCAGGTATGGCTTCGTCCG 60.227 63.158 0.00 0.00 40.52 4.79
218 219 4.857251 CCAGGTATGGCTTCGTCC 57.143 61.111 0.00 0.00 40.52 4.79
288 289 8.468399 CGTTCCTAGTCTTTATCTTTACCTCTT 58.532 37.037 0.00 0.00 0.00 2.85
289 290 7.416551 GCGTTCCTAGTCTTTATCTTTACCTCT 60.417 40.741 0.00 0.00 0.00 3.69
290 291 6.696583 GCGTTCCTAGTCTTTATCTTTACCTC 59.303 42.308 0.00 0.00 0.00 3.85
291 292 6.154021 TGCGTTCCTAGTCTTTATCTTTACCT 59.846 38.462 0.00 0.00 0.00 3.08
292 293 6.255237 GTGCGTTCCTAGTCTTTATCTTTACC 59.745 42.308 0.00 0.00 0.00 2.85
293 294 6.255237 GGTGCGTTCCTAGTCTTTATCTTTAC 59.745 42.308 0.00 0.00 0.00 2.01
294 295 6.071221 TGGTGCGTTCCTAGTCTTTATCTTTA 60.071 38.462 0.00 0.00 0.00 1.85
295 296 5.176592 GGTGCGTTCCTAGTCTTTATCTTT 58.823 41.667 0.00 0.00 0.00 2.52
296 297 4.222145 TGGTGCGTTCCTAGTCTTTATCTT 59.778 41.667 0.00 0.00 0.00 2.40
297 298 3.767673 TGGTGCGTTCCTAGTCTTTATCT 59.232 43.478 0.00 0.00 0.00 1.98
298 299 3.864003 GTGGTGCGTTCCTAGTCTTTATC 59.136 47.826 0.00 0.00 0.00 1.75
299 300 3.369157 GGTGGTGCGTTCCTAGTCTTTAT 60.369 47.826 0.00 0.00 0.00 1.40
300 301 2.028748 GGTGGTGCGTTCCTAGTCTTTA 60.029 50.000 0.00 0.00 0.00 1.85
301 302 1.270678 GGTGGTGCGTTCCTAGTCTTT 60.271 52.381 0.00 0.00 0.00 2.52
302 303 0.320697 GGTGGTGCGTTCCTAGTCTT 59.679 55.000 0.00 0.00 0.00 3.01
303 304 1.874345 CGGTGGTGCGTTCCTAGTCT 61.874 60.000 0.00 0.00 0.00 3.24
304 305 1.445582 CGGTGGTGCGTTCCTAGTC 60.446 63.158 0.00 0.00 0.00 2.59
305 306 0.895100 TACGGTGGTGCGTTCCTAGT 60.895 55.000 0.00 1.18 0.00 2.57
306 307 0.458669 ATACGGTGGTGCGTTCCTAG 59.541 55.000 0.00 0.00 0.00 3.02
307 308 0.457035 GATACGGTGGTGCGTTCCTA 59.543 55.000 0.00 0.00 0.00 2.94
337 338 0.034059 CTCTTGTGTCCCTTGCGTCT 59.966 55.000 0.00 0.00 0.00 4.18
370 374 2.289506 GGAGATATACCGTCCTTTGGGC 60.290 54.545 0.00 0.00 0.00 5.36
371 375 3.006967 CAGGAGATATACCGTCCTTTGGG 59.993 52.174 0.00 0.00 38.75 4.12
378 382 6.439675 GGTATCTTCAGGAGATATACCGTC 57.560 45.833 1.40 0.00 46.30 4.79
533 537 3.673338 GGATTGGTGAGTTTTAAAAGCGC 59.327 43.478 0.00 0.00 0.00 5.92
582 586 4.194720 ATGTCGCGAGCTCCGTCC 62.195 66.667 10.24 13.66 41.15 4.79
859 875 2.579738 GAGGACGCCAAGGAGGAC 59.420 66.667 0.00 0.00 41.22 3.85
1012 1028 3.299977 CACAGTCCGTGGGTCCGA 61.300 66.667 0.00 0.00 42.34 4.55
1026 1042 2.203640 AGCTCCTCCACGGACACA 60.204 61.111 0.00 0.00 36.69 3.72
1086 1102 3.314331 CAGTGGTCTGGCCGGTCT 61.314 66.667 12.43 3.62 41.21 3.85
1142 1158 2.672996 GCGTCATGGCCACCTTGT 60.673 61.111 8.16 0.00 31.64 3.16
1190 1206 3.691342 CTTCGTCGGGTGAGGCCA 61.691 66.667 5.01 0.00 39.65 5.36
1193 1209 2.572284 GGTCTTCGTCGGGTGAGG 59.428 66.667 0.00 0.00 0.00 3.86
1448 1464 4.111016 CGAGCGGCGTCACCACTA 62.111 66.667 9.37 0.00 39.03 2.74
1491 1507 3.792053 GACCCACGATAGCCTGCGG 62.792 68.421 0.00 0.00 42.67 5.69
1518 1534 3.295273 AGCGCGCCGGATATCTCA 61.295 61.111 30.33 0.00 0.00 3.27
1535 1551 2.364186 TCGCTGCTCCCATCTCCA 60.364 61.111 0.00 0.00 0.00 3.86
1663 1681 6.972328 GTGTGGCAAATTGGTAATGTGTATAG 59.028 38.462 0.00 0.00 0.00 1.31
1671 1689 4.285517 TGGATTGTGTGGCAAATTGGTAAT 59.714 37.500 0.00 0.00 40.91 1.89
1672 1690 3.643320 TGGATTGTGTGGCAAATTGGTAA 59.357 39.130 0.00 0.00 40.91 2.85
1673 1691 3.234353 TGGATTGTGTGGCAAATTGGTA 58.766 40.909 0.00 0.00 40.91 3.25
1674 1692 2.037511 CTGGATTGTGTGGCAAATTGGT 59.962 45.455 0.00 0.00 40.91 3.67
1675 1693 2.299582 TCTGGATTGTGTGGCAAATTGG 59.700 45.455 0.00 0.00 40.91 3.16
1676 1694 3.256383 TCTCTGGATTGTGTGGCAAATTG 59.744 43.478 0.00 0.00 40.91 2.32
1677 1695 3.499338 TCTCTGGATTGTGTGGCAAATT 58.501 40.909 0.00 0.00 40.91 1.82
1678 1696 3.159213 TCTCTGGATTGTGTGGCAAAT 57.841 42.857 0.00 0.00 40.91 2.32
1679 1697 2.655090 TCTCTGGATTGTGTGGCAAA 57.345 45.000 0.00 0.00 40.91 3.68
1680 1698 2.655090 TTCTCTGGATTGTGTGGCAA 57.345 45.000 0.00 0.00 41.89 4.52
1688 1706 8.954950 AAGTGATGTAGTAATTCTCTGGATTG 57.045 34.615 0.00 0.00 0.00 2.67
1722 1740 8.523915 TCAGCCTGAAATATTTGAACATGTAT 57.476 30.769 5.17 0.00 0.00 2.29
1764 1783 1.519898 GCTTGGCGATGGCATTTGG 60.520 57.895 0.00 0.00 42.47 3.28
1851 1880 0.796312 GGTGTGAGTGTTATGTGCCG 59.204 55.000 0.00 0.00 0.00 5.69
1938 1983 7.801716 TTCTGGAGTTGGTATACAAATATGC 57.198 36.000 5.01 0.00 41.58 3.14
1997 2045 4.142038 ACCGGACTGGAAATATAATTGGC 58.858 43.478 9.46 0.00 42.00 4.52
2014 2062 6.835488 ACAAGTATACCTAAGATTGTACCGGA 59.165 38.462 9.46 0.00 0.00 5.14
2050 2098 2.352503 CAGCAAAAGCATGGTGGTAC 57.647 50.000 0.00 0.00 43.33 3.34
2054 2103 1.807000 TTGCACAGCAAAAGCATGGTG 60.807 47.619 12.82 12.82 45.96 4.17
2091 2140 5.243207 ACACCTGGTAGAAATTTTCCGTAG 58.757 41.667 0.00 0.67 0.00 3.51
2092 2141 5.231702 ACACCTGGTAGAAATTTTCCGTA 57.768 39.130 0.00 0.00 0.00 4.02
2093 2142 4.070009 GACACCTGGTAGAAATTTTCCGT 58.930 43.478 0.00 0.00 0.00 4.69
2152 2208 0.519175 CGACTGATTTTGCGAAGGCG 60.519 55.000 0.00 0.00 44.10 5.52
2154 2210 3.296516 GCGACTGATTTTGCGAAGG 57.703 52.632 0.00 0.00 0.00 3.46
2200 2256 2.050077 GCTTGTTTGTCGCAGGCC 60.050 61.111 0.00 0.00 33.60 5.19
2320 2376 6.583050 GCTCGATATGTGATAGTACAACTTCC 59.417 42.308 0.00 0.00 33.69 3.46
2350 2406 3.320826 ACAGACCCCCTTTCAATTTTTCG 59.679 43.478 0.00 0.00 0.00 3.46
2367 2423 5.963594 ACTATCGGTTCTCCTTTTACAGAC 58.036 41.667 0.00 0.00 0.00 3.51
2396 2452 4.669318 TGATTTCGCTAAACTAGAGTCCG 58.331 43.478 0.00 0.00 0.00 4.79
2483 2540 8.054152 TGCTCAACTTGCTCAATATTTCATAA 57.946 30.769 0.00 0.00 0.00 1.90
2491 2548 3.008375 ACCTCTGCTCAACTTGCTCAATA 59.992 43.478 0.00 0.00 0.00 1.90
2523 2580 5.295152 CCGTGTTATACTGATTTCCCTACC 58.705 45.833 0.00 0.00 0.00 3.18
2543 2600 2.745281 CCGTTTCATGTATTTGACCCGT 59.255 45.455 0.00 0.00 0.00 5.28
2545 2602 5.339990 CATTCCGTTTCATGTATTTGACCC 58.660 41.667 0.00 0.00 0.00 4.46
2546 2603 4.798387 GCATTCCGTTTCATGTATTTGACC 59.202 41.667 0.00 0.00 0.00 4.02
2555 2612 2.642139 AAGCTGCATTCCGTTTCATG 57.358 45.000 1.02 0.00 0.00 3.07
2562 2619 2.423185 TGTATTCCAAAGCTGCATTCCG 59.577 45.455 1.02 0.00 0.00 4.30
2578 2635 7.118723 TGGAGGCAGAGAAATGTAAATGTATT 58.881 34.615 0.00 0.00 0.00 1.89
2597 2654 0.813821 GACAGCAAAATCCTGGAGGC 59.186 55.000 1.52 3.51 34.65 4.70
2616 2687 5.245531 TCTTGTATGCTTACAGAACCAAGG 58.754 41.667 11.77 0.00 39.43 3.61
2808 2884 4.220382 TGAACATTAAAGGGTGATTGCCTG 59.780 41.667 0.00 0.00 0.00 4.85
2934 3028 5.927954 ATCATTTTGCGCAAGAATTTTGT 57.072 30.435 23.68 0.00 43.02 2.83
2942 3037 4.422840 TCATGGTTATCATTTTGCGCAAG 58.577 39.130 23.68 12.29 32.92 4.01
2969 3064 5.869344 TGTTACTGTGCTAAGCTATTGTCAG 59.131 40.000 0.00 0.00 0.00 3.51
3089 3185 2.824041 CGGAAATCAGGGGGCGTG 60.824 66.667 0.00 0.00 0.00 5.34
3098 3194 3.119814 CGACTTCTCAGAGACGGAAATCA 60.120 47.826 8.70 0.00 32.58 2.57
3134 3230 2.540361 GCAGCAACAAATATCTCAGGCG 60.540 50.000 0.00 0.00 0.00 5.52
3173 3269 3.093057 GGAGTCTGCTAGTTCTCTGGAA 58.907 50.000 0.00 0.00 0.00 3.53
3185 3281 3.084786 GCATAAAAGGTTGGAGTCTGCT 58.915 45.455 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.