Multiple sequence alignment - TraesCS6B01G450000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G450000 chr6B 100.000 3560 0 0 1 3560 708987737 708991296 0.000000e+00 6575.0
1 TraesCS6B01G450000 chr6B 88.031 1295 85 47 934 2222 709020831 709019601 0.000000e+00 1469.0
2 TraesCS6B01G450000 chr6B 96.454 282 9 1 10 290 557419245 557418964 6.960000e-127 464.0
3 TraesCS6B01G450000 chr6B 86.397 272 23 11 490 752 709021393 709021127 5.820000e-73 285.0
4 TraesCS6B01G450000 chr6D 90.083 2531 145 47 440 2902 464983871 464986363 0.000000e+00 3186.0
5 TraesCS6B01G450000 chr6D 91.210 1479 82 29 514 1980 465012097 465010655 0.000000e+00 1967.0
6 TraesCS6B01G450000 chr6D 88.056 360 25 8 3113 3462 464986686 464987037 9.200000e-111 411.0
7 TraesCS6B01G450000 chr6D 84.231 260 38 3 493 751 101397940 101397683 2.120000e-62 250.0
8 TraesCS6B01G450000 chr6D 90.780 141 13 0 2082 2222 465010526 465010386 4.690000e-44 189.0
9 TraesCS6B01G450000 chr6D 84.167 120 18 1 309 428 464983584 464983702 8.080000e-22 115.0
10 TraesCS6B01G450000 chr6D 89.706 68 3 2 3491 3554 464987035 464987102 2.280000e-12 84.2
11 TraesCS6B01G450000 chr6A 86.872 2506 174 91 440 2886 611512689 611515098 0.000000e+00 2662.0
12 TraesCS6B01G450000 chr6A 89.957 1165 79 21 1079 2222 611523196 611522049 0.000000e+00 1469.0
13 TraesCS6B01G450000 chr6A 85.522 670 71 14 2904 3554 611515261 611515923 0.000000e+00 676.0
14 TraesCS6B01G450000 chr5B 87.414 874 83 17 855 1727 326613046 326612199 0.000000e+00 979.0
15 TraesCS6B01G450000 chr5B 83.777 376 40 15 1830 2201 326612110 326611752 1.580000e-88 337.0
16 TraesCS6B01G450000 chr5D 87.130 878 86 17 855 1726 287571946 287571090 0.000000e+00 970.0
17 TraesCS6B01G450000 chr5D 94.077 287 15 2 1 286 30726624 30726909 5.460000e-118 435.0
18 TraesCS6B01G450000 chr5D 82.812 384 40 21 1829 2201 287571008 287570640 1.590000e-83 320.0
19 TraesCS6B01G450000 chr5D 80.800 250 32 9 493 738 321682462 321682225 7.850000e-42 182.0
20 TraesCS6B01G450000 chr5A 86.902 878 85 18 855 1726 379401700 379400847 0.000000e+00 957.0
21 TraesCS6B01G450000 chr5A 95.105 286 13 1 1 285 552330102 552330387 1.950000e-122 449.0
22 TraesCS6B01G450000 chr5A 93.711 159 10 0 1830 1988 379400765 379400607 4.590000e-59 239.0
23 TraesCS6B01G450000 chr5A 89.437 142 11 3 2086 2226 379400513 379400375 3.650000e-40 176.0
24 TraesCS6B01G450000 chr7A 96.751 277 8 1 10 285 663965181 663965457 9.010000e-126 460.0
25 TraesCS6B01G450000 chr7A 96.029 277 9 2 10 285 690045684 690045409 1.950000e-122 449.0
26 TraesCS6B01G450000 chr3B 96.043 278 10 1 10 286 816795764 816795487 5.420000e-123 451.0
27 TraesCS6B01G450000 chr2D 95.122 287 13 1 1 286 2244408 2244694 5.420000e-123 451.0
28 TraesCS6B01G450000 chr2D 85.673 349 34 10 1079 1425 519134779 519134445 1.570000e-93 353.0
29 TraesCS6B01G450000 chr2D 77.509 578 99 21 1175 1726 480181623 480181051 5.740000e-83 318.0
30 TraesCS6B01G450000 chr1A 96.043 278 9 2 10 286 405146281 405146005 5.420000e-123 451.0
31 TraesCS6B01G450000 chr1A 80.400 250 33 7 493 738 234658780 234658543 3.650000e-40 176.0
32 TraesCS6B01G450000 chr3D 95.307 277 12 1 10 285 470722329 470722053 4.220000e-119 438.0
33 TraesCS6B01G450000 chr1D 85.932 263 32 4 493 751 339905919 339906180 3.500000e-70 276.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G450000 chr6B 708987737 708991296 3559 False 6575.000000 6575 100.000000 1 3560 1 chr6B.!!$F1 3559
1 TraesCS6B01G450000 chr6B 709019601 709021393 1792 True 877.000000 1469 87.214000 490 2222 2 chr6B.!!$R2 1732
2 TraesCS6B01G450000 chr6D 465010386 465012097 1711 True 1078.000000 1967 90.995000 514 2222 2 chr6D.!!$R2 1708
3 TraesCS6B01G450000 chr6D 464983584 464987102 3518 False 949.050000 3186 88.003000 309 3554 4 chr6D.!!$F1 3245
4 TraesCS6B01G450000 chr6A 611512689 611515923 3234 False 1669.000000 2662 86.197000 440 3554 2 chr6A.!!$F1 3114
5 TraesCS6B01G450000 chr6A 611522049 611523196 1147 True 1469.000000 1469 89.957000 1079 2222 1 chr6A.!!$R1 1143
6 TraesCS6B01G450000 chr5B 326611752 326613046 1294 True 658.000000 979 85.595500 855 2201 2 chr5B.!!$R1 1346
7 TraesCS6B01G450000 chr5D 287570640 287571946 1306 True 645.000000 970 84.971000 855 2201 2 chr5D.!!$R2 1346
8 TraesCS6B01G450000 chr5A 379400375 379401700 1325 True 457.333333 957 90.016667 855 2226 3 chr5A.!!$R1 1371
9 TraesCS6B01G450000 chr2D 480181051 480181623 572 True 318.000000 318 77.509000 1175 1726 1 chr2D.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.184451 ATAGGGCTCCAATGCACCTG 59.816 55.0 0.0 0.0 36.97 4.00 F
1071 1384 0.036022 AAGAGCTGAGTGAAGCACCC 59.964 55.0 0.0 0.0 46.08 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 2407 0.669625 AAGCTTAACACGGTCGAGCC 60.670 55.0 9.39 1.35 33.96 4.70 R
2961 3648 0.252197 ACACCGTTAGGATTGAGCCC 59.748 55.0 0.00 0.00 41.02 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.543018 GATGCTTAAATAAGTAAATATGCGACC 57.457 33.333 2.42 0.00 35.75 4.79
29 30 8.671384 TGCTTAAATAAGTAAATATGCGACCT 57.329 30.769 2.42 0.00 35.75 3.85
30 31 9.767228 TGCTTAAATAAGTAAATATGCGACCTA 57.233 29.630 2.42 0.00 35.75 3.08
43 44 8.445275 AATATGCGACCTATACAAAAATGACA 57.555 30.769 0.00 0.00 0.00 3.58
44 45 6.751514 ATGCGACCTATACAAAAATGACAA 57.248 33.333 0.00 0.00 0.00 3.18
45 46 6.561737 TGCGACCTATACAAAAATGACAAA 57.438 33.333 0.00 0.00 0.00 2.83
46 47 6.971602 TGCGACCTATACAAAAATGACAAAA 58.028 32.000 0.00 0.00 0.00 2.44
47 48 7.598278 TGCGACCTATACAAAAATGACAAAAT 58.402 30.769 0.00 0.00 0.00 1.82
48 49 7.540400 TGCGACCTATACAAAAATGACAAAATG 59.460 33.333 0.00 0.00 0.00 2.32
49 50 7.009174 GCGACCTATACAAAAATGACAAAATGG 59.991 37.037 0.00 0.00 0.00 3.16
50 51 8.026607 CGACCTATACAAAAATGACAAAATGGT 58.973 33.333 0.00 0.00 0.00 3.55
51 52 9.139174 GACCTATACAAAAATGACAAAATGGTG 57.861 33.333 0.00 0.00 0.00 4.17
52 53 8.865090 ACCTATACAAAAATGACAAAATGGTGA 58.135 29.630 0.00 0.00 0.00 4.02
53 54 9.874205 CCTATACAAAAATGACAAAATGGTGAT 57.126 29.630 0.00 0.00 0.00 3.06
57 58 7.929159 ACAAAAATGACAAAATGGTGATTTCC 58.071 30.769 0.00 0.00 34.25 3.13
58 59 7.555554 ACAAAAATGACAAAATGGTGATTTCCA 59.444 29.630 0.00 0.00 34.25 3.53
59 60 8.404000 CAAAAATGACAAAATGGTGATTTCCAA 58.596 29.630 0.00 0.00 41.09 3.53
60 61 8.517062 AAAATGACAAAATGGTGATTTCCAAA 57.483 26.923 0.00 0.00 41.09 3.28
61 62 8.694581 AAATGACAAAATGGTGATTTCCAAAT 57.305 26.923 0.00 0.00 41.09 2.32
62 63 9.790344 AAATGACAAAATGGTGATTTCCAAATA 57.210 25.926 0.00 0.00 41.09 1.40
63 64 9.439500 AATGACAAAATGGTGATTTCCAAATAG 57.561 29.630 0.00 0.00 41.09 1.73
64 65 7.961351 TGACAAAATGGTGATTTCCAAATAGT 58.039 30.769 0.00 0.00 41.09 2.12
65 66 7.871973 TGACAAAATGGTGATTTCCAAATAGTG 59.128 33.333 0.00 0.00 41.09 2.74
66 67 7.961351 ACAAAATGGTGATTTCCAAATAGTGA 58.039 30.769 0.00 0.00 41.09 3.41
67 68 8.428063 ACAAAATGGTGATTTCCAAATAGTGAA 58.572 29.630 0.00 0.00 41.09 3.18
68 69 9.439500 CAAAATGGTGATTTCCAAATAGTGAAT 57.561 29.630 0.00 0.00 41.09 2.57
73 74 8.196771 TGGTGATTTCCAAATAGTGAATAATGC 58.803 33.333 0.00 0.00 34.24 3.56
74 75 8.196771 GGTGATTTCCAAATAGTGAATAATGCA 58.803 33.333 0.00 0.00 0.00 3.96
75 76 9.754382 GTGATTTCCAAATAGTGAATAATGCAT 57.246 29.630 0.00 0.00 0.00 3.96
76 77 9.752961 TGATTTCCAAATAGTGAATAATGCATG 57.247 29.630 0.00 0.00 0.00 4.06
77 78 8.597662 ATTTCCAAATAGTGAATAATGCATGC 57.402 30.769 11.82 11.82 0.00 4.06
78 79 6.712179 TCCAAATAGTGAATAATGCATGCA 57.288 33.333 25.04 25.04 0.00 3.96
79 80 6.506147 TCCAAATAGTGAATAATGCATGCAC 58.494 36.000 25.37 10.66 42.93 4.57
85 86 4.735985 GTGAATAATGCATGCACTGTTCA 58.264 39.130 29.54 29.54 39.81 3.18
86 87 5.345702 GTGAATAATGCATGCACTGTTCAT 58.654 37.500 33.46 12.58 39.81 2.57
87 88 5.457799 GTGAATAATGCATGCACTGTTCATC 59.542 40.000 33.46 24.86 39.81 2.92
88 89 5.358725 TGAATAATGCATGCACTGTTCATCT 59.641 36.000 29.54 7.92 0.00 2.90
89 90 5.847111 ATAATGCATGCACTGTTCATCTT 57.153 34.783 25.37 12.49 0.00 2.40
90 91 4.530710 AATGCATGCACTGTTCATCTTT 57.469 36.364 25.37 6.25 0.00 2.52
91 92 3.564235 TGCATGCACTGTTCATCTTTC 57.436 42.857 18.46 0.00 0.00 2.62
92 93 2.229543 TGCATGCACTGTTCATCTTTCC 59.770 45.455 18.46 0.00 0.00 3.13
93 94 2.229543 GCATGCACTGTTCATCTTTCCA 59.770 45.455 14.21 0.00 0.00 3.53
94 95 3.305539 GCATGCACTGTTCATCTTTCCAA 60.306 43.478 14.21 0.00 0.00 3.53
95 96 4.796946 GCATGCACTGTTCATCTTTCCAAA 60.797 41.667 14.21 0.00 0.00 3.28
96 97 5.475719 CATGCACTGTTCATCTTTCCAAAT 58.524 37.500 0.00 0.00 0.00 2.32
97 98 5.534207 TGCACTGTTCATCTTTCCAAATT 57.466 34.783 0.00 0.00 0.00 1.82
98 99 5.531634 TGCACTGTTCATCTTTCCAAATTC 58.468 37.500 0.00 0.00 0.00 2.17
99 100 5.068855 TGCACTGTTCATCTTTCCAAATTCA 59.931 36.000 0.00 0.00 0.00 2.57
100 101 5.403466 GCACTGTTCATCTTTCCAAATTCAC 59.597 40.000 0.00 0.00 0.00 3.18
101 102 6.506147 CACTGTTCATCTTTCCAAATTCACA 58.494 36.000 0.00 0.00 0.00 3.58
102 103 6.979817 CACTGTTCATCTTTCCAAATTCACAA 59.020 34.615 0.00 0.00 0.00 3.33
103 104 7.654520 CACTGTTCATCTTTCCAAATTCACAAT 59.345 33.333 0.00 0.00 0.00 2.71
104 105 8.206189 ACTGTTCATCTTTCCAAATTCACAATT 58.794 29.630 0.00 0.00 0.00 2.32
105 106 8.961294 TGTTCATCTTTCCAAATTCACAATTT 57.039 26.923 0.00 0.00 41.57 1.82
106 107 9.393512 TGTTCATCTTTCCAAATTCACAATTTT 57.606 25.926 0.00 0.00 38.97 1.82
107 108 9.654417 GTTCATCTTTCCAAATTCACAATTTTG 57.346 29.630 0.00 0.00 38.97 2.44
108 109 8.961294 TCATCTTTCCAAATTCACAATTTTGT 57.039 26.923 0.00 0.00 38.97 2.83
109 110 9.044150 TCATCTTTCCAAATTCACAATTTTGTC 57.956 29.630 0.00 0.00 38.97 3.18
110 111 8.828644 CATCTTTCCAAATTCACAATTTTGTCA 58.171 29.630 0.00 0.00 38.97 3.58
111 112 8.961294 TCTTTCCAAATTCACAATTTTGTCAT 57.039 26.923 0.00 0.00 38.97 3.06
112 113 9.393512 TCTTTCCAAATTCACAATTTTGTCATT 57.606 25.926 0.00 0.00 38.97 2.57
116 117 9.784680 TCCAAATTCACAATTTTGTCATTTTTG 57.215 25.926 7.12 8.08 38.97 2.44
117 118 9.570488 CCAAATTCACAATTTTGTCATTTTTGT 57.430 25.926 7.12 0.00 38.97 2.83
123 124 9.429359 TCACAATTTTGTCATTTTTGTGTAACT 57.571 25.926 15.91 0.00 44.57 2.24
124 125 9.687717 CACAATTTTGTCATTTTTGTGTAACTC 57.312 29.630 11.36 0.00 41.23 3.01
125 126 9.429359 ACAATTTTGTCATTTTTGTGTAACTCA 57.571 25.926 0.00 0.00 36.50 3.41
126 127 9.687717 CAATTTTGTCATTTTTGTGTAACTCAC 57.312 29.630 0.00 0.00 46.31 3.51
144 145 9.503427 GTAACTCACATGGTTATTTATTTCAGC 57.497 33.333 0.00 0.00 32.78 4.26
145 146 7.701539 ACTCACATGGTTATTTATTTCAGCA 57.298 32.000 0.00 0.00 0.00 4.41
146 147 8.297470 ACTCACATGGTTATTTATTTCAGCAT 57.703 30.769 0.00 0.00 0.00 3.79
147 148 8.408601 ACTCACATGGTTATTTATTTCAGCATC 58.591 33.333 0.00 0.00 0.00 3.91
148 149 8.291191 TCACATGGTTATTTATTTCAGCATCA 57.709 30.769 0.00 0.00 0.00 3.07
149 150 8.747471 TCACATGGTTATTTATTTCAGCATCAA 58.253 29.630 0.00 0.00 0.00 2.57
150 151 9.368674 CACATGGTTATTTATTTCAGCATCAAA 57.631 29.630 0.00 0.00 0.00 2.69
151 152 9.941325 ACATGGTTATTTATTTCAGCATCAAAA 57.059 25.926 0.00 0.00 0.00 2.44
162 163 8.836268 ATTTCAGCATCAAAATTTACACATGT 57.164 26.923 0.00 0.00 0.00 3.21
163 164 7.640616 TTCAGCATCAAAATTTACACATGTG 57.359 32.000 24.25 24.25 0.00 3.21
164 165 6.747125 TCAGCATCAAAATTTACACATGTGT 58.253 32.000 32.47 32.47 46.87 3.72
165 166 7.880105 TCAGCATCAAAATTTACACATGTGTA 58.120 30.769 30.31 30.31 44.42 2.90
232 233 6.783892 TGAACTTCAAAATAGCATTTTGGC 57.216 33.333 22.68 13.58 39.25 4.52
233 234 6.286758 TGAACTTCAAAATAGCATTTTGGCA 58.713 32.000 22.68 14.50 39.25 4.92
234 235 6.202570 TGAACTTCAAAATAGCATTTTGGCAC 59.797 34.615 22.68 14.93 39.25 5.01
235 236 5.609423 ACTTCAAAATAGCATTTTGGCACA 58.391 33.333 22.68 9.88 39.25 4.57
236 237 5.697633 ACTTCAAAATAGCATTTTGGCACAG 59.302 36.000 22.68 17.77 42.39 3.66
237 238 5.212532 TCAAAATAGCATTTTGGCACAGT 57.787 34.783 22.68 0.00 42.39 3.55
238 239 5.609423 TCAAAATAGCATTTTGGCACAGTT 58.391 33.333 22.68 0.00 42.39 3.16
239 240 6.054295 TCAAAATAGCATTTTGGCACAGTTT 58.946 32.000 22.68 0.00 42.39 2.66
240 241 7.212976 TCAAAATAGCATTTTGGCACAGTTTA 58.787 30.769 22.68 7.76 42.39 2.01
241 242 7.712639 TCAAAATAGCATTTTGGCACAGTTTAA 59.287 29.630 22.68 7.29 42.39 1.52
242 243 8.341173 CAAAATAGCATTTTGGCACAGTTTAAA 58.659 29.630 18.68 0.00 42.39 1.52
243 244 8.443953 AAATAGCATTTTGGCACAGTTTAAAA 57.556 26.923 0.00 0.00 42.39 1.52
244 245 8.443953 AATAGCATTTTGGCACAGTTTAAAAA 57.556 26.923 0.00 0.00 42.39 1.94
261 262 3.893326 AAAAATAGGGCTCCAATGCAC 57.107 42.857 0.00 0.00 36.44 4.57
262 263 1.780503 AAATAGGGCTCCAATGCACC 58.219 50.000 0.00 0.00 36.97 5.01
263 264 0.929244 AATAGGGCTCCAATGCACCT 59.071 50.000 0.00 0.00 36.97 4.00
264 265 0.184451 ATAGGGCTCCAATGCACCTG 59.816 55.000 0.00 0.00 36.97 4.00
265 266 1.925285 TAGGGCTCCAATGCACCTGG 61.925 60.000 9.95 9.95 36.97 4.45
266 267 2.757099 GGCTCCAATGCACCTGGG 60.757 66.667 15.06 8.27 34.46 4.45
267 268 2.036256 GCTCCAATGCACCTGGGT 59.964 61.111 15.06 0.00 34.46 4.51
268 269 1.607467 GCTCCAATGCACCTGGGTT 60.607 57.895 15.06 0.00 34.46 4.11
269 270 1.598701 GCTCCAATGCACCTGGGTTC 61.599 60.000 15.06 3.37 34.46 3.62
270 271 0.967380 CTCCAATGCACCTGGGTTCC 60.967 60.000 15.06 0.00 34.46 3.62
271 272 1.228831 CCAATGCACCTGGGTTCCA 60.229 57.895 8.54 0.00 0.00 3.53
272 273 0.831288 CCAATGCACCTGGGTTCCAA 60.831 55.000 8.54 0.00 30.80 3.53
273 274 1.047002 CAATGCACCTGGGTTCCAAA 58.953 50.000 0.00 0.00 30.80 3.28
274 275 1.001181 CAATGCACCTGGGTTCCAAAG 59.999 52.381 0.00 0.00 30.80 2.77
275 276 0.188342 ATGCACCTGGGTTCCAAAGT 59.812 50.000 0.00 0.00 30.80 2.66
276 277 0.754957 TGCACCTGGGTTCCAAAGTG 60.755 55.000 0.00 10.62 39.44 3.16
277 278 0.467290 GCACCTGGGTTCCAAAGTGA 60.467 55.000 16.32 0.00 39.04 3.41
278 279 1.318576 CACCTGGGTTCCAAAGTGAC 58.681 55.000 9.79 0.00 39.04 3.67
279 280 1.133792 CACCTGGGTTCCAAAGTGACT 60.134 52.381 9.79 0.00 39.04 3.41
280 281 1.569072 ACCTGGGTTCCAAAGTGACTT 59.431 47.619 0.00 0.00 30.80 3.01
281 282 2.024369 ACCTGGGTTCCAAAGTGACTTT 60.024 45.455 4.45 4.45 33.58 2.66
282 283 3.031013 CCTGGGTTCCAAAGTGACTTTT 58.969 45.455 8.03 0.00 30.60 2.27
283 284 3.450817 CCTGGGTTCCAAAGTGACTTTTT 59.549 43.478 8.03 0.00 30.60 1.94
284 285 4.432712 CTGGGTTCCAAAGTGACTTTTTG 58.567 43.478 8.03 3.03 35.75 2.44
285 286 3.194861 GGGTTCCAAAGTGACTTTTTGC 58.805 45.455 8.03 0.00 34.88 3.68
286 287 3.194861 GGTTCCAAAGTGACTTTTTGCC 58.805 45.455 8.03 5.09 34.88 4.52
287 288 3.194861 GTTCCAAAGTGACTTTTTGCCC 58.805 45.455 8.03 0.00 34.88 5.36
288 289 2.745968 TCCAAAGTGACTTTTTGCCCT 58.254 42.857 8.03 0.00 34.88 5.19
289 290 3.904717 TCCAAAGTGACTTTTTGCCCTA 58.095 40.909 8.03 0.00 34.88 3.53
290 291 3.888930 TCCAAAGTGACTTTTTGCCCTAG 59.111 43.478 8.03 0.00 34.88 3.02
291 292 3.005791 CCAAAGTGACTTTTTGCCCTAGG 59.994 47.826 8.03 0.06 34.88 3.02
292 293 2.586648 AGTGACTTTTTGCCCTAGGG 57.413 50.000 24.89 24.89 38.57 3.53
293 294 2.062636 AGTGACTTTTTGCCCTAGGGA 58.937 47.619 33.21 13.92 37.50 4.20
294 295 2.649816 AGTGACTTTTTGCCCTAGGGAT 59.350 45.455 33.21 6.51 37.50 3.85
295 296 2.755103 GTGACTTTTTGCCCTAGGGATG 59.245 50.000 33.21 14.62 37.50 3.51
296 297 2.378547 TGACTTTTTGCCCTAGGGATGT 59.621 45.455 33.21 17.77 37.50 3.06
297 298 3.017442 GACTTTTTGCCCTAGGGATGTC 58.983 50.000 33.21 21.66 37.50 3.06
298 299 2.649816 ACTTTTTGCCCTAGGGATGTCT 59.350 45.455 33.21 3.45 37.50 3.41
299 300 3.850173 ACTTTTTGCCCTAGGGATGTCTA 59.150 43.478 33.21 7.63 37.50 2.59
300 301 4.478686 ACTTTTTGCCCTAGGGATGTCTAT 59.521 41.667 33.21 8.34 37.50 1.98
301 302 5.670361 ACTTTTTGCCCTAGGGATGTCTATA 59.330 40.000 33.21 7.01 37.50 1.31
302 303 6.332901 ACTTTTTGCCCTAGGGATGTCTATAT 59.667 38.462 33.21 5.27 37.50 0.86
303 304 7.516209 ACTTTTTGCCCTAGGGATGTCTATATA 59.484 37.037 33.21 4.26 37.50 0.86
304 305 7.496346 TTTTGCCCTAGGGATGTCTATATAG 57.504 40.000 33.21 3.10 37.50 1.31
305 306 5.144159 TGCCCTAGGGATGTCTATATAGG 57.856 47.826 33.21 0.00 37.50 2.57
306 307 4.799579 TGCCCTAGGGATGTCTATATAGGA 59.200 45.833 33.21 0.00 37.50 2.94
307 308 5.103473 TGCCCTAGGGATGTCTATATAGGAG 60.103 48.000 33.21 0.00 37.50 3.69
327 328 7.829378 AGGAGTACATACGATTGAGAAAAAC 57.171 36.000 0.00 0.00 0.00 2.43
328 329 7.383687 AGGAGTACATACGATTGAGAAAAACA 58.616 34.615 0.00 0.00 0.00 2.83
329 330 7.545965 AGGAGTACATACGATTGAGAAAAACAG 59.454 37.037 0.00 0.00 0.00 3.16
331 332 8.603242 AGTACATACGATTGAGAAAAACAGTT 57.397 30.769 0.00 0.00 0.00 3.16
332 333 9.701098 AGTACATACGATTGAGAAAAACAGTTA 57.299 29.630 0.00 0.00 0.00 2.24
333 334 9.953825 GTACATACGATTGAGAAAAACAGTTAG 57.046 33.333 0.00 0.00 0.00 2.34
334 335 8.827177 ACATACGATTGAGAAAAACAGTTAGA 57.173 30.769 0.00 0.00 0.00 2.10
335 336 9.268268 ACATACGATTGAGAAAAACAGTTAGAA 57.732 29.630 0.00 0.00 0.00 2.10
338 339 8.836959 ACGATTGAGAAAAACAGTTAGAAAAC 57.163 30.769 0.00 0.00 35.72 2.43
339 340 7.913821 ACGATTGAGAAAAACAGTTAGAAAACC 59.086 33.333 0.00 0.00 36.15 3.27
341 342 9.803315 GATTGAGAAAAACAGTTAGAAAACCTT 57.197 29.630 0.00 0.00 36.15 3.50
354 355 9.946165 AGTTAGAAAACCTTAAATTTGAGAACG 57.054 29.630 11.34 0.00 36.15 3.95
355 356 9.177304 GTTAGAAAACCTTAAATTTGAGAACGG 57.823 33.333 11.34 0.00 0.00 4.44
358 359 5.372547 AACCTTAAATTTGAGAACGGAGC 57.627 39.130 11.34 0.00 0.00 4.70
361 362 4.201724 CCTTAAATTTGAGAACGGAGCGAG 60.202 45.833 11.34 0.00 0.00 5.03
364 365 2.342910 TTTGAGAACGGAGCGAGTAC 57.657 50.000 0.00 0.00 0.00 2.73
374 375 3.250744 CGGAGCGAGTACTTGATTTGAA 58.749 45.455 14.70 0.00 0.00 2.69
379 380 3.994392 GCGAGTACTTGATTTGAACCAGA 59.006 43.478 14.70 0.00 0.00 3.86
430 431 9.578576 AGCTTATTTCATGGTCATACATATGTT 57.421 29.630 14.77 0.00 35.26 2.71
433 434 9.964303 TTATTTCATGGTCATACATATGTTTGC 57.036 29.630 14.77 11.81 35.26 3.68
434 435 5.671742 TCATGGTCATACATATGTTTGCG 57.328 39.130 14.77 0.62 35.26 4.85
437 438 6.934083 TCATGGTCATACATATGTTTGCGTAT 59.066 34.615 14.77 8.08 35.26 3.06
441 599 8.126074 TGGTCATACATATGTTTGCGTATTTTC 58.874 33.333 14.77 2.14 35.26 2.29
454 612 6.134787 TGCGTATTTTCTTTTGATTTTCGC 57.865 33.333 0.00 0.00 39.33 4.70
456 614 5.344933 GCGTATTTTCTTTTGATTTTCGCCT 59.655 36.000 0.00 0.00 34.20 5.52
459 617 5.982465 TTTTCTTTTGATTTTCGCCTTGG 57.018 34.783 0.00 0.00 0.00 3.61
463 622 0.521291 TTGATTTTCGCCTTGGCGAG 59.479 50.000 30.88 8.36 43.18 5.03
464 623 1.226407 GATTTTCGCCTTGGCGAGC 60.226 57.895 30.88 19.79 43.18 5.03
472 631 2.037136 CCTTGGCGAGCAGAGTTGG 61.037 63.158 0.00 0.00 0.00 3.77
482 641 1.530655 CAGAGTTGGGGCCGGTTTT 60.531 57.895 1.90 0.00 0.00 2.43
483 642 1.112916 CAGAGTTGGGGCCGGTTTTT 61.113 55.000 1.90 0.00 0.00 1.94
507 666 2.960384 GTGGCCATGATTGATTGGATGA 59.040 45.455 9.72 0.00 34.81 2.92
508 667 3.576982 GTGGCCATGATTGATTGGATGAT 59.423 43.478 9.72 0.00 34.81 2.45
509 668 3.830178 TGGCCATGATTGATTGGATGATC 59.170 43.478 0.00 0.00 34.81 2.92
522 681 7.173032 TGATTGGATGATCATCAAGGGATAAG 58.827 38.462 31.49 0.00 39.54 1.73
523 682 6.520021 TTGGATGATCATCAAGGGATAAGT 57.480 37.500 31.49 0.00 39.54 2.24
745 915 0.611714 ACCGCCGACTAAACCATTCT 59.388 50.000 0.00 0.00 0.00 2.40
753 923 5.995897 GCCGACTAAACCATTCTATACCATT 59.004 40.000 0.00 0.00 0.00 3.16
1000 1301 1.499007 ACTCCCTCTCCTCATCTCTCC 59.501 57.143 0.00 0.00 0.00 3.71
1059 1369 1.605738 AAGCCAAGGCCAAGAGCTG 60.606 57.895 5.01 0.00 43.17 4.24
1069 1382 1.155042 CCAAGAGCTGAGTGAAGCAC 58.845 55.000 0.00 0.00 46.08 4.40
1070 1383 1.155042 CAAGAGCTGAGTGAAGCACC 58.845 55.000 0.00 0.00 46.08 5.01
1071 1384 0.036022 AAGAGCTGAGTGAAGCACCC 59.964 55.000 0.00 0.00 46.08 4.61
1641 1975 2.685999 GGGCTTGGGGCTGAGATT 59.314 61.111 0.00 0.00 41.46 2.40
1644 1978 0.613012 GGCTTGGGGCTGAGATTGTT 60.613 55.000 0.00 0.00 41.46 2.83
1732 2066 2.332063 CGTCCCCGTAAGTAGTCCTA 57.668 55.000 0.00 0.00 0.00 2.94
1734 2068 2.551459 CGTCCCCGTAAGTAGTCCTATG 59.449 54.545 0.00 0.00 0.00 2.23
1735 2069 3.745480 CGTCCCCGTAAGTAGTCCTATGA 60.745 52.174 0.00 0.00 0.00 2.15
1737 2071 4.037327 GTCCCCGTAAGTAGTCCTATGAAC 59.963 50.000 0.00 0.00 0.00 3.18
1744 2078 8.182881 CCGTAAGTAGTCCTATGAACTATATGC 58.817 40.741 0.00 0.00 32.19 3.14
1815 2192 2.817258 TGGGCGGTGAAACTAATCAAAG 59.183 45.455 0.00 0.00 36.74 2.77
1817 2194 2.415491 GGCGGTGAAACTAATCAAAGCC 60.415 50.000 8.01 8.01 42.71 4.35
2006 2407 6.548622 AGAATCAACATCCTCCACCATTATTG 59.451 38.462 0.00 0.00 0.00 1.90
2048 2512 6.101650 TGATGATGATTATGGTTACGAGCT 57.898 37.500 0.00 0.00 0.00 4.09
2063 2535 2.049959 CGAGCTGCGACTAATCTCATG 58.950 52.381 0.00 0.00 44.57 3.07
2203 2675 0.773644 AGTCCACCAATCAACCAGCT 59.226 50.000 0.00 0.00 0.00 4.24
2205 2679 0.895100 TCCACCAATCAACCAGCTGC 60.895 55.000 8.66 0.00 0.00 5.25
2206 2680 1.180456 CCACCAATCAACCAGCTGCA 61.180 55.000 8.66 0.00 0.00 4.41
2270 2754 2.193536 GTGGTGGTGGTGGTTGCTC 61.194 63.158 0.00 0.00 0.00 4.26
2395 2889 1.143305 CACCTGTTCAAGTCTGCGAG 58.857 55.000 0.00 0.00 0.00 5.03
2396 2890 0.753262 ACCTGTTCAAGTCTGCGAGT 59.247 50.000 0.00 0.00 0.00 4.18
2397 2891 1.139058 ACCTGTTCAAGTCTGCGAGTT 59.861 47.619 0.00 0.00 0.00 3.01
2398 2892 2.213499 CCTGTTCAAGTCTGCGAGTTT 58.787 47.619 0.00 0.00 0.00 2.66
2399 2893 2.221981 CCTGTTCAAGTCTGCGAGTTTC 59.778 50.000 0.00 0.00 0.00 2.78
2400 2894 2.866156 CTGTTCAAGTCTGCGAGTTTCA 59.134 45.455 0.00 0.00 0.00 2.69
2401 2895 2.866156 TGTTCAAGTCTGCGAGTTTCAG 59.134 45.455 0.00 0.00 0.00 3.02
2402 2896 2.866762 GTTCAAGTCTGCGAGTTTCAGT 59.133 45.455 0.00 0.00 33.48 3.41
2403 2897 4.049186 GTTCAAGTCTGCGAGTTTCAGTA 58.951 43.478 0.00 0.00 33.48 2.74
2404 2898 3.639538 TCAAGTCTGCGAGTTTCAGTAC 58.360 45.455 0.00 0.00 33.48 2.73
2405 2899 3.318275 TCAAGTCTGCGAGTTTCAGTACT 59.682 43.478 0.00 0.00 33.48 2.73
2406 2900 3.562567 AGTCTGCGAGTTTCAGTACTC 57.437 47.619 0.00 0.00 40.90 2.59
2407 2901 2.229302 AGTCTGCGAGTTTCAGTACTCC 59.771 50.000 0.00 0.00 41.18 3.85
2408 2902 1.544691 TCTGCGAGTTTCAGTACTCCC 59.455 52.381 0.00 0.00 41.18 4.30
2409 2903 1.546476 CTGCGAGTTTCAGTACTCCCT 59.454 52.381 0.00 0.00 41.18 4.20
2443 2949 0.519519 TCCTTTTGTATTGCACGCGG 59.480 50.000 12.47 0.00 0.00 6.46
2475 2981 7.095397 TGGAGCGTGCATATGTATGTAAATTAC 60.095 37.037 13.64 0.00 36.11 1.89
2626 3157 2.988549 GACGCACTCACGAACGCTG 61.989 63.158 0.00 0.00 36.70 5.18
2645 3176 3.552890 GCTGGGTGTTCATTTCTTTGGTC 60.553 47.826 0.00 0.00 0.00 4.02
2677 3208 4.694037 GGTGGAGTTAACTTTTCGTGCTAT 59.306 41.667 10.02 0.00 0.00 2.97
2706 3241 5.474532 TCATCTCTTTGGTGGTTTTGATGAG 59.525 40.000 0.00 0.00 35.59 2.90
2709 3244 4.541705 TCTTTGGTGGTTTTGATGAGGAA 58.458 39.130 0.00 0.00 0.00 3.36
2716 3251 5.245075 GGTGGTTTTGATGAGGAATTAACCA 59.755 40.000 0.00 0.00 0.00 3.67
2728 3263 3.241701 GAATTAACCAACACCATGTGCG 58.758 45.455 0.00 0.00 36.98 5.34
2732 3267 0.383949 ACCAACACCATGTGCGTTTC 59.616 50.000 0.00 0.00 36.98 2.78
2739 3276 2.034558 CACCATGTGCGTTTCTTTTCCT 59.965 45.455 0.00 0.00 0.00 3.36
2744 3281 4.561735 TGTGCGTTTCTTTTCCTAAAGG 57.438 40.909 0.00 0.00 40.93 3.11
2762 3299 1.465172 GGGAAAACCCTGGCCTCTT 59.535 57.895 3.32 0.00 34.51 2.85
2764 3301 0.960861 GGAAAACCCTGGCCTCTTCG 60.961 60.000 3.32 0.00 0.00 3.79
2798 3339 5.028549 ACACAGTCATTTCAGAGTCACTT 57.971 39.130 0.00 0.00 0.00 3.16
2805 3346 5.800941 GTCATTTCAGAGTCACTTAGTACCG 59.199 44.000 0.00 0.00 0.00 4.02
2853 3394 6.552725 TGGTATCAAGATTACAGAGCTCATCT 59.447 38.462 17.77 12.26 39.56 2.90
2886 3539 0.602638 CTGACACGCCAACCAAGCTA 60.603 55.000 0.00 0.00 0.00 3.32
2902 3555 4.989797 CCAAGCTAATTGAACAATGCAACA 59.010 37.500 10.75 0.00 41.83 3.33
2920 3607 2.268076 ACCTGCGTGTTTGCATCCC 61.268 57.895 0.00 0.00 45.26 3.85
2937 3624 0.812811 CCCGCAGTGATGATCAGTGG 60.813 60.000 26.47 17.05 45.50 4.00
2939 3626 1.434622 CGCAGTGATGATCAGTGGCC 61.435 60.000 26.47 13.22 45.50 5.36
2942 3629 1.741706 CAGTGATGATCAGTGGCCAAC 59.258 52.381 19.97 1.26 42.56 3.77
2944 3631 0.697658 TGATGATCAGTGGCCAACCA 59.302 50.000 7.24 1.09 46.51 3.67
2961 3648 5.452356 GCCAACCATCAAATAAGATGAAGGG 60.452 44.000 5.57 4.93 46.51 3.95
2970 3657 2.744352 AAGATGAAGGGGGCTCAATC 57.256 50.000 0.00 0.00 0.00 2.67
2971 3658 0.849417 AGATGAAGGGGGCTCAATCC 59.151 55.000 0.00 0.00 0.00 3.01
2976 3663 0.546598 AAGGGGGCTCAATCCTAACG 59.453 55.000 0.00 0.00 0.00 3.18
3045 3840 7.882179 AGTTTAAAATTTTGATACGAGGCTGT 58.118 30.769 13.76 0.00 0.00 4.40
3060 3855 4.202020 CGAGGCTGTGCTGAATAGTAGTAA 60.202 45.833 0.00 0.00 0.00 2.24
3064 3859 6.763610 AGGCTGTGCTGAATAGTAGTAATTTC 59.236 38.462 0.00 0.00 0.00 2.17
3082 3878 8.225416 AGTAATTTCTTTCCCAACTTCTAAGGT 58.775 33.333 0.00 0.00 0.00 3.50
3104 3900 0.944386 GCTTGAGCCTGTCGAAACAA 59.056 50.000 0.00 0.00 34.24 2.83
3108 3904 1.228154 AGCCTGTCGAAACAACCCC 60.228 57.895 0.00 0.00 34.24 4.95
3109 3905 2.265904 GCCTGTCGAAACAACCCCC 61.266 63.158 0.00 0.00 34.24 5.40
3110 3906 1.454539 CCTGTCGAAACAACCCCCT 59.545 57.895 0.00 0.00 34.24 4.79
3111 3907 0.605589 CCTGTCGAAACAACCCCCTC 60.606 60.000 0.00 0.00 34.24 4.30
3116 3912 2.235402 GTCGAAACAACCCCCTCAGATA 59.765 50.000 0.00 0.00 0.00 1.98
3124 3920 0.469331 CCCCCTCAGATACGCCACTA 60.469 60.000 0.00 0.00 0.00 2.74
3129 3925 2.033550 CCTCAGATACGCCACTAGTGAC 59.966 54.545 24.68 12.19 0.00 3.67
3163 3959 5.351465 CGAATTAACACCACAACTCTAGCAT 59.649 40.000 0.00 0.00 0.00 3.79
3201 3998 1.548081 TGGGACAAATGTGCATCCAG 58.452 50.000 7.37 0.00 38.19 3.86
3204 4001 3.053768 TGGGACAAATGTGCATCCAGATA 60.054 43.478 7.37 0.00 38.19 1.98
3216 4016 6.071784 TGTGCATCCAGATATATGGCATTTTC 60.072 38.462 11.74 0.40 40.41 2.29
3265 4069 0.708370 CAGTGCGACGTGTACATCAC 59.292 55.000 0.00 3.25 43.03 3.06
3284 4088 2.048603 GGCCAATGAGCTGACCACC 61.049 63.158 0.00 0.00 0.00 4.61
3300 4104 2.628657 ACCACCGAGGATAACATAGAGC 59.371 50.000 0.00 0.00 41.22 4.09
3356 4164 2.750237 CTAACCAACAGGCGGCCC 60.750 66.667 17.02 0.00 0.00 5.80
3403 4217 1.065102 CTACGGTACATCTCCACCACG 59.935 57.143 0.00 0.00 34.25 4.94
3414 4228 4.603989 TCTCCACCACGTACAATACAAA 57.396 40.909 0.00 0.00 0.00 2.83
3415 4229 5.155278 TCTCCACCACGTACAATACAAAT 57.845 39.130 0.00 0.00 0.00 2.32
3416 4230 6.283544 TCTCCACCACGTACAATACAAATA 57.716 37.500 0.00 0.00 0.00 1.40
3417 4231 6.101332 TCTCCACCACGTACAATACAAATAC 58.899 40.000 0.00 0.00 0.00 1.89
3418 4232 6.040209 TCCACCACGTACAATACAAATACT 57.960 37.500 0.00 0.00 0.00 2.12
3419 4233 6.101332 TCCACCACGTACAATACAAATACTC 58.899 40.000 0.00 0.00 0.00 2.59
3420 4234 5.292589 CCACCACGTACAATACAAATACTCC 59.707 44.000 0.00 0.00 0.00 3.85
3421 4235 5.005012 CACCACGTACAATACAAATACTCCG 59.995 44.000 0.00 0.00 0.00 4.63
3422 4236 4.505191 CCACGTACAATACAAATACTCCGG 59.495 45.833 0.00 0.00 0.00 5.14
3423 4237 4.505191 CACGTACAATACAAATACTCCGGG 59.495 45.833 0.00 0.00 0.00 5.73
3424 4238 4.402155 ACGTACAATACAAATACTCCGGGA 59.598 41.667 0.00 0.00 0.00 5.14
3442 4262 0.177141 GAGGTGCCTACGTAATGCCA 59.823 55.000 12.65 0.00 0.00 4.92
3472 4292 8.571336 GCAATCACCAGTTTCAGCTATATTATT 58.429 33.333 0.00 0.00 0.00 1.40
3554 4378 1.556564 GAATGCAACGCGAGCTACTA 58.443 50.000 23.72 8.66 0.00 1.82
3555 4379 1.255600 GAATGCAACGCGAGCTACTAC 59.744 52.381 23.72 10.81 0.00 2.73
3556 4380 0.456221 ATGCAACGCGAGCTACTACT 59.544 50.000 23.72 0.00 0.00 2.57
3557 4381 0.179171 TGCAACGCGAGCTACTACTC 60.179 55.000 23.72 0.00 0.00 2.59
3558 4382 0.099082 GCAACGCGAGCTACTACTCT 59.901 55.000 15.93 0.00 34.35 3.24
3559 4383 1.329906 GCAACGCGAGCTACTACTCTA 59.670 52.381 15.93 0.00 34.35 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.543018 GGTCGCATATTTACTTATTTAAGCATC 57.457 33.333 0.00 0.00 36.79 3.91
3 4 9.284968 AGGTCGCATATTTACTTATTTAAGCAT 57.715 29.630 0.00 0.00 36.79 3.79
4 5 8.671384 AGGTCGCATATTTACTTATTTAAGCA 57.329 30.769 0.00 0.00 36.79 3.91
17 18 8.898761 TGTCATTTTTGTATAGGTCGCATATTT 58.101 29.630 0.00 0.00 0.00 1.40
18 19 8.445275 TGTCATTTTTGTATAGGTCGCATATT 57.555 30.769 0.00 0.00 0.00 1.28
19 20 8.445275 TTGTCATTTTTGTATAGGTCGCATAT 57.555 30.769 0.00 0.00 0.00 1.78
20 21 7.851387 TTGTCATTTTTGTATAGGTCGCATA 57.149 32.000 0.00 0.00 0.00 3.14
21 22 6.751514 TTGTCATTTTTGTATAGGTCGCAT 57.248 33.333 0.00 0.00 0.00 4.73
22 23 6.561737 TTTGTCATTTTTGTATAGGTCGCA 57.438 33.333 0.00 0.00 0.00 5.10
23 24 7.009174 CCATTTTGTCATTTTTGTATAGGTCGC 59.991 37.037 0.00 0.00 0.00 5.19
24 25 8.026607 ACCATTTTGTCATTTTTGTATAGGTCG 58.973 33.333 0.00 0.00 0.00 4.79
25 26 9.139174 CACCATTTTGTCATTTTTGTATAGGTC 57.861 33.333 0.00 0.00 0.00 3.85
26 27 8.865090 TCACCATTTTGTCATTTTTGTATAGGT 58.135 29.630 0.00 0.00 0.00 3.08
27 28 9.874205 ATCACCATTTTGTCATTTTTGTATAGG 57.126 29.630 0.00 0.00 0.00 2.57
31 32 9.050601 GGAAATCACCATTTTGTCATTTTTGTA 57.949 29.630 0.00 0.00 31.94 2.41
32 33 7.555554 TGGAAATCACCATTTTGTCATTTTTGT 59.444 29.630 0.00 0.00 34.77 2.83
33 34 7.928103 TGGAAATCACCATTTTGTCATTTTTG 58.072 30.769 0.00 0.00 34.77 2.44
34 35 8.517062 TTGGAAATCACCATTTTGTCATTTTT 57.483 26.923 0.00 0.00 39.82 1.94
35 36 8.517062 TTTGGAAATCACCATTTTGTCATTTT 57.483 26.923 0.00 0.00 39.82 1.82
36 37 8.694581 ATTTGGAAATCACCATTTTGTCATTT 57.305 26.923 0.00 0.00 39.82 2.32
37 38 9.439500 CTATTTGGAAATCACCATTTTGTCATT 57.561 29.630 0.00 0.00 39.82 2.57
38 39 8.596293 ACTATTTGGAAATCACCATTTTGTCAT 58.404 29.630 0.00 0.00 39.82 3.06
39 40 7.871973 CACTATTTGGAAATCACCATTTTGTCA 59.128 33.333 0.00 0.00 39.82 3.58
40 41 8.087750 TCACTATTTGGAAATCACCATTTTGTC 58.912 33.333 0.00 0.00 39.82 3.18
41 42 7.961351 TCACTATTTGGAAATCACCATTTTGT 58.039 30.769 0.00 0.00 39.82 2.83
42 43 8.830201 TTCACTATTTGGAAATCACCATTTTG 57.170 30.769 0.00 0.00 39.82 2.44
47 48 8.196771 GCATTATTCACTATTTGGAAATCACCA 58.803 33.333 0.00 0.00 38.24 4.17
48 49 8.196771 TGCATTATTCACTATTTGGAAATCACC 58.803 33.333 0.00 0.00 0.00 4.02
49 50 9.754382 ATGCATTATTCACTATTTGGAAATCAC 57.246 29.630 0.00 0.00 0.00 3.06
50 51 9.752961 CATGCATTATTCACTATTTGGAAATCA 57.247 29.630 0.00 0.00 0.00 2.57
51 52 8.706035 GCATGCATTATTCACTATTTGGAAATC 58.294 33.333 14.21 0.00 0.00 2.17
52 53 8.205512 TGCATGCATTATTCACTATTTGGAAAT 58.794 29.630 18.46 0.00 0.00 2.17
53 54 7.492020 GTGCATGCATTATTCACTATTTGGAAA 59.508 33.333 25.64 0.00 31.32 3.13
54 55 6.979817 GTGCATGCATTATTCACTATTTGGAA 59.020 34.615 25.64 0.00 31.32 3.53
55 56 6.321945 AGTGCATGCATTATTCACTATTTGGA 59.678 34.615 25.64 0.00 40.72 3.53
56 57 6.419710 CAGTGCATGCATTATTCACTATTTGG 59.580 38.462 25.64 0.00 40.58 3.28
57 58 6.976349 ACAGTGCATGCATTATTCACTATTTG 59.024 34.615 25.64 5.46 40.58 2.32
58 59 7.104043 ACAGTGCATGCATTATTCACTATTT 57.896 32.000 25.64 0.00 40.58 1.40
59 60 6.704289 ACAGTGCATGCATTATTCACTATT 57.296 33.333 25.64 1.93 40.58 1.73
60 61 6.319405 TGAACAGTGCATGCATTATTCACTAT 59.681 34.615 27.00 5.10 40.58 2.12
61 62 5.647225 TGAACAGTGCATGCATTATTCACTA 59.353 36.000 27.00 10.03 40.58 2.74
62 63 4.460034 TGAACAGTGCATGCATTATTCACT 59.540 37.500 27.00 14.53 42.80 3.41
63 64 4.735985 TGAACAGTGCATGCATTATTCAC 58.264 39.130 27.00 12.58 33.75 3.18
64 65 5.358725 AGATGAACAGTGCATGCATTATTCA 59.641 36.000 30.89 30.89 31.90 2.57
65 66 5.828747 AGATGAACAGTGCATGCATTATTC 58.171 37.500 25.64 24.08 0.00 1.75
66 67 5.847111 AGATGAACAGTGCATGCATTATT 57.153 34.783 25.64 15.96 0.00 1.40
67 68 5.847111 AAGATGAACAGTGCATGCATTAT 57.153 34.783 25.64 5.73 0.00 1.28
68 69 5.393352 GGAAAGATGAACAGTGCATGCATTA 60.393 40.000 25.64 4.62 0.00 1.90
69 70 4.491676 GAAAGATGAACAGTGCATGCATT 58.508 39.130 25.64 18.02 0.00 3.56
70 71 3.119245 GGAAAGATGAACAGTGCATGCAT 60.119 43.478 25.64 7.59 0.00 3.96
71 72 2.229543 GGAAAGATGAACAGTGCATGCA 59.770 45.455 18.46 18.46 0.00 3.96
72 73 2.229543 TGGAAAGATGAACAGTGCATGC 59.770 45.455 11.82 11.82 0.00 4.06
73 74 4.508461 TTGGAAAGATGAACAGTGCATG 57.492 40.909 0.00 0.00 0.00 4.06
74 75 5.733620 ATTTGGAAAGATGAACAGTGCAT 57.266 34.783 0.00 0.00 0.00 3.96
75 76 5.068855 TGAATTTGGAAAGATGAACAGTGCA 59.931 36.000 0.00 0.00 0.00 4.57
76 77 5.403466 GTGAATTTGGAAAGATGAACAGTGC 59.597 40.000 0.00 0.00 0.00 4.40
77 78 6.506147 TGTGAATTTGGAAAGATGAACAGTG 58.494 36.000 0.00 0.00 0.00 3.66
78 79 6.713762 TGTGAATTTGGAAAGATGAACAGT 57.286 33.333 0.00 0.00 0.00 3.55
79 80 8.597662 AATTGTGAATTTGGAAAGATGAACAG 57.402 30.769 0.00 0.00 0.00 3.16
80 81 8.961294 AAATTGTGAATTTGGAAAGATGAACA 57.039 26.923 0.00 0.00 39.50 3.18
81 82 9.654417 CAAAATTGTGAATTTGGAAAGATGAAC 57.346 29.630 0.00 0.00 40.05 3.18
82 83 9.393512 ACAAAATTGTGAATTTGGAAAGATGAA 57.606 25.926 1.62 0.00 40.05 2.57
83 84 8.961294 ACAAAATTGTGAATTTGGAAAGATGA 57.039 26.923 1.62 0.00 40.05 2.92
84 85 8.828644 TGACAAAATTGTGAATTTGGAAAGATG 58.171 29.630 1.62 0.00 42.43 2.90
85 86 8.961294 TGACAAAATTGTGAATTTGGAAAGAT 57.039 26.923 1.62 0.00 42.43 2.40
86 87 8.961294 ATGACAAAATTGTGAATTTGGAAAGA 57.039 26.923 1.62 0.00 42.43 2.52
90 91 9.784680 CAAAAATGACAAAATTGTGAATTTGGA 57.215 25.926 1.62 0.00 42.43 3.53
91 92 9.570488 ACAAAAATGACAAAATTGTGAATTTGG 57.430 25.926 20.25 12.33 42.43 3.28
99 100 9.429359 TGAGTTACACAAAAATGACAAAATTGT 57.571 25.926 0.00 0.00 45.65 2.71
118 119 9.503427 GCTGAAATAAATAACCATGTGAGTTAC 57.497 33.333 0.00 0.00 32.77 2.50
119 120 9.237187 TGCTGAAATAAATAACCATGTGAGTTA 57.763 29.630 0.00 0.00 34.38 2.24
120 121 8.121305 TGCTGAAATAAATAACCATGTGAGTT 57.879 30.769 0.00 0.00 0.00 3.01
121 122 7.701539 TGCTGAAATAAATAACCATGTGAGT 57.298 32.000 0.00 0.00 0.00 3.41
122 123 8.407832 TGATGCTGAAATAAATAACCATGTGAG 58.592 33.333 0.00 0.00 0.00 3.51
123 124 8.291191 TGATGCTGAAATAAATAACCATGTGA 57.709 30.769 0.00 0.00 0.00 3.58
124 125 8.929827 TTGATGCTGAAATAAATAACCATGTG 57.070 30.769 0.00 0.00 0.00 3.21
125 126 9.941325 TTTTGATGCTGAAATAAATAACCATGT 57.059 25.926 0.00 0.00 0.00 3.21
136 137 9.926158 ACATGTGTAAATTTTGATGCTGAAATA 57.074 25.926 0.00 0.00 0.00 1.40
137 138 8.714179 CACATGTGTAAATTTTGATGCTGAAAT 58.286 29.630 18.03 0.00 0.00 2.17
138 139 7.710044 ACACATGTGTAAATTTTGATGCTGAAA 59.290 29.630 29.66 0.00 42.90 2.69
139 140 7.208777 ACACATGTGTAAATTTTGATGCTGAA 58.791 30.769 29.66 0.00 42.90 3.02
140 141 6.747125 ACACATGTGTAAATTTTGATGCTGA 58.253 32.000 29.66 0.00 42.90 4.26
207 208 7.281774 TGCCAAAATGCTATTTTGAAGTTCAAA 59.718 29.630 23.91 23.91 43.84 2.69
208 209 6.765036 TGCCAAAATGCTATTTTGAAGTTCAA 59.235 30.769 23.97 14.35 40.73 2.69
209 210 6.202570 GTGCCAAAATGCTATTTTGAAGTTCA 59.797 34.615 23.97 0.08 40.73 3.18
210 211 6.202570 TGTGCCAAAATGCTATTTTGAAGTTC 59.797 34.615 23.97 0.00 40.73 3.01
211 212 6.054295 TGTGCCAAAATGCTATTTTGAAGTT 58.946 32.000 23.97 0.00 40.73 2.66
212 213 5.609423 TGTGCCAAAATGCTATTTTGAAGT 58.391 33.333 23.97 0.00 40.73 3.01
213 214 5.697633 ACTGTGCCAAAATGCTATTTTGAAG 59.302 36.000 23.97 18.87 40.73 3.02
214 215 5.609423 ACTGTGCCAAAATGCTATTTTGAA 58.391 33.333 23.97 14.82 40.73 2.69
215 216 5.212532 ACTGTGCCAAAATGCTATTTTGA 57.787 34.783 23.97 11.08 40.73 2.69
216 217 5.927954 AACTGTGCCAAAATGCTATTTTG 57.072 34.783 19.15 19.15 38.68 2.44
217 218 8.443953 TTTAAACTGTGCCAAAATGCTATTTT 57.556 26.923 0.00 0.00 0.00 1.82
218 219 8.443953 TTTTAAACTGTGCCAAAATGCTATTT 57.556 26.923 0.00 0.00 0.00 1.40
219 220 8.443953 TTTTTAAACTGTGCCAAAATGCTATT 57.556 26.923 0.00 0.00 0.00 1.73
241 242 2.501316 GGTGCATTGGAGCCCTATTTTT 59.499 45.455 0.00 0.00 0.00 1.94
242 243 2.110578 GGTGCATTGGAGCCCTATTTT 58.889 47.619 0.00 0.00 0.00 1.82
243 244 1.288932 AGGTGCATTGGAGCCCTATTT 59.711 47.619 3.58 0.00 34.69 1.40
244 245 0.929244 AGGTGCATTGGAGCCCTATT 59.071 50.000 3.58 0.00 34.69 1.73
245 246 0.184451 CAGGTGCATTGGAGCCCTAT 59.816 55.000 3.58 0.00 34.69 2.57
246 247 1.609239 CAGGTGCATTGGAGCCCTA 59.391 57.895 3.58 0.00 34.69 3.53
247 248 2.357836 CAGGTGCATTGGAGCCCT 59.642 61.111 3.58 0.00 36.16 5.19
248 249 2.757099 CCAGGTGCATTGGAGCCC 60.757 66.667 13.40 0.00 37.96 5.19
249 250 2.757099 CCCAGGTGCATTGGAGCC 60.757 66.667 18.76 1.31 37.96 4.70
250 251 1.598701 GAACCCAGGTGCATTGGAGC 61.599 60.000 18.76 0.00 37.96 4.70
251 252 0.967380 GGAACCCAGGTGCATTGGAG 60.967 60.000 18.76 12.25 37.96 3.86
252 253 1.076549 GGAACCCAGGTGCATTGGA 59.923 57.895 18.76 0.00 37.96 3.53
253 254 0.831288 TTGGAACCCAGGTGCATTGG 60.831 55.000 12.06 12.06 33.81 3.16
254 255 1.001181 CTTTGGAACCCAGGTGCATTG 59.999 52.381 0.00 0.00 33.81 2.82
255 256 1.341080 CTTTGGAACCCAGGTGCATT 58.659 50.000 0.00 0.00 33.81 3.56
256 257 0.188342 ACTTTGGAACCCAGGTGCAT 59.812 50.000 0.00 0.00 33.81 3.96
257 258 0.754957 CACTTTGGAACCCAGGTGCA 60.755 55.000 0.00 0.00 34.46 4.57
258 259 0.467290 TCACTTTGGAACCCAGGTGC 60.467 55.000 12.78 0.00 38.21 5.01
259 260 1.133792 AGTCACTTTGGAACCCAGGTG 60.134 52.381 11.92 11.92 38.98 4.00
260 261 1.222567 AGTCACTTTGGAACCCAGGT 58.777 50.000 0.00 0.00 33.81 4.00
261 262 2.364972 AAGTCACTTTGGAACCCAGG 57.635 50.000 0.00 0.00 33.81 4.45
262 263 4.432712 CAAAAAGTCACTTTGGAACCCAG 58.567 43.478 2.78 0.00 33.64 4.45
263 264 3.368948 GCAAAAAGTCACTTTGGAACCCA 60.369 43.478 2.78 0.00 33.64 4.51
264 265 3.194861 GCAAAAAGTCACTTTGGAACCC 58.805 45.455 2.78 0.00 33.64 4.11
265 266 3.194861 GGCAAAAAGTCACTTTGGAACC 58.805 45.455 2.78 0.00 33.64 3.62
266 267 3.118775 AGGGCAAAAAGTCACTTTGGAAC 60.119 43.478 2.78 0.00 33.64 3.62
267 268 3.103742 AGGGCAAAAAGTCACTTTGGAA 58.896 40.909 2.78 0.00 33.64 3.53
268 269 2.745968 AGGGCAAAAAGTCACTTTGGA 58.254 42.857 2.78 0.00 33.64 3.53
269 270 3.005791 CCTAGGGCAAAAAGTCACTTTGG 59.994 47.826 2.78 0.57 33.64 3.28
270 271 3.005791 CCCTAGGGCAAAAAGTCACTTTG 59.994 47.826 16.90 0.00 33.64 2.77
271 272 3.117284 TCCCTAGGGCAAAAAGTCACTTT 60.117 43.478 24.42 0.00 33.29 2.66
272 273 2.445525 TCCCTAGGGCAAAAAGTCACTT 59.554 45.455 24.42 0.00 34.68 3.16
273 274 2.062636 TCCCTAGGGCAAAAAGTCACT 58.937 47.619 24.42 0.00 34.68 3.41
274 275 2.579410 TCCCTAGGGCAAAAAGTCAC 57.421 50.000 24.42 0.00 34.68 3.67
275 276 2.378547 ACATCCCTAGGGCAAAAAGTCA 59.621 45.455 24.42 2.26 34.68 3.41
276 277 3.017442 GACATCCCTAGGGCAAAAAGTC 58.983 50.000 24.42 17.92 34.68 3.01
277 278 2.649816 AGACATCCCTAGGGCAAAAAGT 59.350 45.455 24.42 13.76 34.68 2.66
278 279 3.372440 AGACATCCCTAGGGCAAAAAG 57.628 47.619 24.42 10.70 34.68 2.27
279 280 6.780198 ATATAGACATCCCTAGGGCAAAAA 57.220 37.500 24.42 5.66 34.68 1.94
280 281 6.443849 CCTATATAGACATCCCTAGGGCAAAA 59.556 42.308 24.42 6.10 34.68 2.44
281 282 5.964477 CCTATATAGACATCCCTAGGGCAAA 59.036 44.000 24.42 6.53 34.68 3.68
282 283 5.257816 TCCTATATAGACATCCCTAGGGCAA 59.742 44.000 24.42 7.40 34.68 4.52
283 284 4.799579 TCCTATATAGACATCCCTAGGGCA 59.200 45.833 24.42 12.59 34.68 5.36
284 285 5.103430 ACTCCTATATAGACATCCCTAGGGC 60.103 48.000 24.42 9.12 34.68 5.19
285 286 6.599986 ACTCCTATATAGACATCCCTAGGG 57.400 45.833 23.22 23.22 0.00 3.53
286 287 8.103660 TGTACTCCTATATAGACATCCCTAGG 57.896 42.308 11.53 0.06 0.00 3.02
289 290 8.212312 CGTATGTACTCCTATATAGACATCCCT 58.788 40.741 14.74 0.50 0.00 4.20
290 291 8.209584 TCGTATGTACTCCTATATAGACATCCC 58.790 40.741 14.74 8.72 0.00 3.85
291 292 9.781633 ATCGTATGTACTCCTATATAGACATCC 57.218 37.037 14.74 6.49 0.00 3.51
301 302 9.530633 GTTTTTCTCAATCGTATGTACTCCTAT 57.469 33.333 0.00 0.00 0.00 2.57
302 303 8.525316 TGTTTTTCTCAATCGTATGTACTCCTA 58.475 33.333 0.00 0.00 0.00 2.94
303 304 7.383687 TGTTTTTCTCAATCGTATGTACTCCT 58.616 34.615 0.00 0.00 0.00 3.69
304 305 7.331193 ACTGTTTTTCTCAATCGTATGTACTCC 59.669 37.037 0.00 0.00 0.00 3.85
305 306 8.240883 ACTGTTTTTCTCAATCGTATGTACTC 57.759 34.615 0.00 0.00 0.00 2.59
306 307 8.603242 AACTGTTTTTCTCAATCGTATGTACT 57.397 30.769 0.00 0.00 0.00 2.73
307 308 9.953825 CTAACTGTTTTTCTCAATCGTATGTAC 57.046 33.333 0.00 0.00 0.00 2.90
313 314 7.913821 GGTTTTCTAACTGTTTTTCTCAATCGT 59.086 33.333 0.00 0.00 34.59 3.73
328 329 9.946165 CGTTCTCAAATTTAAGGTTTTCTAACT 57.054 29.630 0.00 0.00 34.59 2.24
329 330 9.177304 CCGTTCTCAAATTTAAGGTTTTCTAAC 57.823 33.333 0.00 0.00 0.00 2.34
331 332 8.680039 TCCGTTCTCAAATTTAAGGTTTTCTA 57.320 30.769 0.00 0.00 0.00 2.10
332 333 7.576861 TCCGTTCTCAAATTTAAGGTTTTCT 57.423 32.000 0.00 0.00 0.00 2.52
333 334 6.362551 GCTCCGTTCTCAAATTTAAGGTTTTC 59.637 38.462 0.00 0.00 0.00 2.29
334 335 6.213677 GCTCCGTTCTCAAATTTAAGGTTTT 58.786 36.000 0.00 0.00 0.00 2.43
335 336 5.562113 CGCTCCGTTCTCAAATTTAAGGTTT 60.562 40.000 0.00 0.00 0.00 3.27
337 338 3.435671 CGCTCCGTTCTCAAATTTAAGGT 59.564 43.478 0.00 0.00 0.00 3.50
338 339 3.682858 TCGCTCCGTTCTCAAATTTAAGG 59.317 43.478 0.00 0.00 0.00 2.69
339 340 4.389077 ACTCGCTCCGTTCTCAAATTTAAG 59.611 41.667 0.00 0.00 0.00 1.85
341 342 3.921677 ACTCGCTCCGTTCTCAAATTTA 58.078 40.909 0.00 0.00 0.00 1.40
342 343 2.767505 ACTCGCTCCGTTCTCAAATTT 58.232 42.857 0.00 0.00 0.00 1.82
343 344 2.457366 ACTCGCTCCGTTCTCAAATT 57.543 45.000 0.00 0.00 0.00 1.82
344 345 2.492484 AGTACTCGCTCCGTTCTCAAAT 59.508 45.455 0.00 0.00 0.00 2.32
347 348 1.199327 CAAGTACTCGCTCCGTTCTCA 59.801 52.381 0.00 0.00 0.00 3.27
348 349 1.467734 TCAAGTACTCGCTCCGTTCTC 59.532 52.381 0.00 0.00 0.00 2.87
349 350 1.531423 TCAAGTACTCGCTCCGTTCT 58.469 50.000 0.00 0.00 0.00 3.01
354 355 3.371285 GGTTCAAATCAAGTACTCGCTCC 59.629 47.826 0.00 0.00 0.00 4.70
355 356 3.994392 TGGTTCAAATCAAGTACTCGCTC 59.006 43.478 0.00 0.00 0.00 5.03
358 359 5.470368 TCTCTGGTTCAAATCAAGTACTCG 58.530 41.667 0.00 0.00 0.00 4.18
361 362 9.827411 GTTAAATCTCTGGTTCAAATCAAGTAC 57.173 33.333 0.00 0.00 0.00 2.73
364 365 9.748708 TTTGTTAAATCTCTGGTTCAAATCAAG 57.251 29.630 0.00 0.00 0.00 3.02
374 375 9.673454 GTTTATTTCGTTTGTTAAATCTCTGGT 57.327 29.630 0.00 0.00 0.00 4.00
428 429 7.056783 GCGAAAATCAAAAGAAAATACGCAAAC 59.943 33.333 0.00 0.00 40.63 2.93
429 430 7.060422 GCGAAAATCAAAAGAAAATACGCAAA 58.940 30.769 0.00 0.00 40.63 3.68
430 431 6.346199 GGCGAAAATCAAAAGAAAATACGCAA 60.346 34.615 0.00 0.00 42.24 4.85
431 432 5.117897 GGCGAAAATCAAAAGAAAATACGCA 59.882 36.000 0.00 0.00 42.24 5.24
432 433 5.344933 AGGCGAAAATCAAAAGAAAATACGC 59.655 36.000 0.00 0.00 40.30 4.42
433 434 6.927933 AGGCGAAAATCAAAAGAAAATACG 57.072 33.333 0.00 0.00 0.00 3.06
434 435 7.509797 CCAAGGCGAAAATCAAAAGAAAATAC 58.490 34.615 0.00 0.00 0.00 1.89
437 438 4.272261 GCCAAGGCGAAAATCAAAAGAAAA 59.728 37.500 0.00 0.00 0.00 2.29
454 612 2.037136 CCAACTCTGCTCGCCAAGG 61.037 63.158 0.00 0.00 0.00 3.61
456 614 2.032528 CCCAACTCTGCTCGCCAA 59.967 61.111 0.00 0.00 0.00 4.52
463 622 4.660938 AACCGGCCCCAACTCTGC 62.661 66.667 0.00 0.00 0.00 4.26
464 623 1.112916 AAAAACCGGCCCCAACTCTG 61.113 55.000 0.00 0.00 0.00 3.35
472 631 4.656117 CCACGCAAAAACCGGCCC 62.656 66.667 0.00 0.00 0.00 5.80
482 641 1.135053 CAATCAATCATGGCCACGCAA 60.135 47.619 8.16 0.00 0.00 4.85
483 642 0.456628 CAATCAATCATGGCCACGCA 59.543 50.000 8.16 0.00 0.00 5.24
491 650 7.315890 CCTTGATGATCATCCAATCAATCATG 58.684 38.462 28.61 12.80 38.60 3.07
507 666 7.882271 GCATCTTCTAACTTATCCCTTGATGAT 59.118 37.037 0.00 0.00 32.05 2.45
508 667 7.071698 AGCATCTTCTAACTTATCCCTTGATGA 59.928 37.037 0.00 0.00 32.05 2.92
509 668 7.172875 CAGCATCTTCTAACTTATCCCTTGATG 59.827 40.741 0.00 0.00 32.18 3.07
710 876 2.286772 GGCGGTTGTTAATTAGCGGATG 60.287 50.000 11.56 0.00 35.93 3.51
745 915 7.070571 TCACCTGTCATGTCATGTAATGGTATA 59.929 37.037 12.54 6.49 46.73 1.47
753 923 3.055891 CACCTCACCTGTCATGTCATGTA 60.056 47.826 12.54 3.03 0.00 2.29
889 1147 9.474920 TGATGATAATGTTTTGTTTTCTTGGTC 57.525 29.630 0.00 0.00 0.00 4.02
1000 1301 2.531522 TGATGTGTGTGTGTGAGAGG 57.468 50.000 0.00 0.00 0.00 3.69
1629 1963 1.139498 TCCCAACAATCTCAGCCCCA 61.139 55.000 0.00 0.00 0.00 4.96
1641 1975 1.885388 CAGCACGAACGTCCCAACA 60.885 57.895 0.00 0.00 0.00 3.33
1644 1978 3.542676 ACCAGCACGAACGTCCCA 61.543 61.111 0.00 0.00 0.00 4.37
1727 2061 8.744652 ACTGTATCTGCATATAGTTCATAGGAC 58.255 37.037 0.00 0.00 34.19 3.85
1732 2066 6.762333 TGCACTGTATCTGCATATAGTTCAT 58.238 36.000 0.00 0.00 39.76 2.57
1744 2078 1.215244 CTGCCGATGCACTGTATCTG 58.785 55.000 5.68 0.65 44.23 2.90
1776 2118 2.093921 CCCAAACCAAACAAGAACGGTT 60.094 45.455 0.00 0.00 43.55 4.44
1782 2124 0.684805 ACCGCCCAAACCAAACAAGA 60.685 50.000 0.00 0.00 0.00 3.02
1784 2126 0.970937 TCACCGCCCAAACCAAACAA 60.971 50.000 0.00 0.00 0.00 2.83
1815 2192 2.988684 TGCATGTTTCCCACCGGC 60.989 61.111 0.00 0.00 0.00 6.13
1817 2194 1.176527 AATCTGCATGTTTCCCACCG 58.823 50.000 0.00 0.00 0.00 4.94
2006 2407 0.669625 AAGCTTAACACGGTCGAGCC 60.670 55.000 9.39 1.35 33.96 4.70
2048 2512 3.384467 TCATGTCCATGAGATTAGTCGCA 59.616 43.478 5.88 0.00 42.42 5.10
2063 2535 5.747197 GCACAATTTCAATCAGATCATGTCC 59.253 40.000 0.00 0.00 0.00 4.02
2203 2675 2.636647 TAAGATTCCATCCGCATGCA 57.363 45.000 19.57 0.00 0.00 3.96
2205 2679 2.094894 GCGATAAGATTCCATCCGCATG 59.905 50.000 0.00 0.00 0.00 4.06
2206 2680 2.027745 AGCGATAAGATTCCATCCGCAT 60.028 45.455 0.00 0.00 0.00 4.73
2283 2767 0.872021 GCCGAGACATGATCCACGTC 60.872 60.000 0.00 0.00 0.00 4.34
2315 2799 6.443934 ACAGCACGGTAGATATAGATGATC 57.556 41.667 0.00 0.00 0.00 2.92
2395 2889 5.211174 AGTACAACAGGGAGTACTGAAAC 57.789 43.478 0.00 0.00 46.60 2.78
2401 2895 3.581770 AGGGAAAGTACAACAGGGAGTAC 59.418 47.826 0.00 0.00 40.60 2.73
2402 2896 3.865571 AGGGAAAGTACAACAGGGAGTA 58.134 45.455 0.00 0.00 0.00 2.59
2403 2897 2.702748 AGGGAAAGTACAACAGGGAGT 58.297 47.619 0.00 0.00 0.00 3.85
2404 2898 3.559384 GGAAGGGAAAGTACAACAGGGAG 60.559 52.174 0.00 0.00 0.00 4.30
2405 2899 2.374170 GGAAGGGAAAGTACAACAGGGA 59.626 50.000 0.00 0.00 0.00 4.20
2406 2900 2.375509 AGGAAGGGAAAGTACAACAGGG 59.624 50.000 0.00 0.00 0.00 4.45
2407 2901 3.790089 AGGAAGGGAAAGTACAACAGG 57.210 47.619 0.00 0.00 0.00 4.00
2408 2902 5.359860 ACAAAAGGAAGGGAAAGTACAACAG 59.640 40.000 0.00 0.00 0.00 3.16
2409 2903 5.265989 ACAAAAGGAAGGGAAAGTACAACA 58.734 37.500 0.00 0.00 0.00 3.33
2443 2949 4.552166 ACATATGCACGCTCCATTAAAC 57.448 40.909 1.58 0.00 0.00 2.01
2475 2981 5.686834 TCGATCGTCGTTCCTTCATAATAG 58.313 41.667 15.94 0.00 41.35 1.73
2544 3058 8.908786 AAATAGGACGATGATCACATAATGTT 57.091 30.769 0.00 0.00 36.82 2.71
2546 3060 8.446273 GGAAAATAGGACGATGATCACATAATG 58.554 37.037 0.00 0.00 36.82 1.90
2547 3061 8.378565 AGGAAAATAGGACGATGATCACATAAT 58.621 33.333 0.00 0.00 36.82 1.28
2550 3064 6.042552 AGAGGAAAATAGGACGATGATCACAT 59.957 38.462 0.00 0.00 39.67 3.21
2626 3157 2.621526 ACGACCAAAGAAATGAACACCC 59.378 45.455 0.00 0.00 0.00 4.61
2645 3176 2.946990 AGTTAACTCCACCAAAACCACG 59.053 45.455 1.12 0.00 0.00 4.94
2677 3208 1.780309 ACCACCAAAGAGATGAACCCA 59.220 47.619 0.00 0.00 0.00 4.51
2706 3241 3.584834 GCACATGGTGTTGGTTAATTCC 58.415 45.455 0.00 0.00 35.75 3.01
2709 3244 2.235016 ACGCACATGGTGTTGGTTAAT 58.765 42.857 0.00 0.00 36.69 1.40
2798 3339 3.387374 TGGTTGTGTTCCTTTCGGTACTA 59.613 43.478 0.00 0.00 32.30 1.82
2805 3346 1.064952 CGGTGTGGTTGTGTTCCTTTC 59.935 52.381 0.00 0.00 0.00 2.62
2844 3385 8.572185 TCAGTAACAGATTATGTAGATGAGCTC 58.428 37.037 6.82 6.82 43.00 4.09
2853 3394 5.105675 TGGCGTGTCAGTAACAGATTATGTA 60.106 40.000 0.00 0.00 43.00 2.29
2902 3555 2.268076 GGGATGCAAACACGCAGGT 61.268 57.895 0.00 0.00 46.99 4.00
2920 3607 1.434622 GGCCACTGATCATCACTGCG 61.435 60.000 0.00 0.00 0.00 5.18
2937 3624 5.452356 CCCTTCATCTTATTTGATGGTTGGC 60.452 44.000 4.91 0.00 42.82 4.52
2939 3626 5.069516 CCCCCTTCATCTTATTTGATGGTTG 59.930 44.000 4.91 0.00 42.82 3.77
2942 3629 3.575687 GCCCCCTTCATCTTATTTGATGG 59.424 47.826 4.91 0.00 42.82 3.51
2944 3631 4.168675 TGAGCCCCCTTCATCTTATTTGAT 59.831 41.667 0.00 0.00 0.00 2.57
2946 3633 3.902218 TGAGCCCCCTTCATCTTATTTG 58.098 45.455 0.00 0.00 0.00 2.32
2950 3637 2.443255 GGATTGAGCCCCCTTCATCTTA 59.557 50.000 0.00 0.00 0.00 2.10
2953 3640 0.849417 AGGATTGAGCCCCCTTCATC 59.151 55.000 0.00 0.00 0.00 2.92
2961 3648 0.252197 ACACCGTTAGGATTGAGCCC 59.748 55.000 0.00 0.00 41.02 5.19
2970 3657 2.225727 GGCTTTTCTTCACACCGTTAGG 59.774 50.000 0.00 0.00 45.13 2.69
2971 3658 2.875933 TGGCTTTTCTTCACACCGTTAG 59.124 45.455 0.00 0.00 0.00 2.34
2976 3663 3.119137 AGTTTGTGGCTTTTCTTCACACC 60.119 43.478 0.00 0.00 40.54 4.16
3022 3817 6.584563 GCACAGCCTCGTATCAAAATTTTAAA 59.415 34.615 2.44 0.00 0.00 1.52
3045 3840 8.325787 TGGGAAAGAAATTACTACTATTCAGCA 58.674 33.333 0.00 0.00 0.00 4.41
3060 3855 5.775195 CCACCTTAGAAGTTGGGAAAGAAAT 59.225 40.000 0.00 0.00 35.18 2.17
3073 3868 1.743996 GCTCAAGCCCACCTTAGAAG 58.256 55.000 0.00 0.00 34.31 2.85
3088 3884 0.534203 GGGTTGTTTCGACAGGCTCA 60.534 55.000 0.00 0.00 0.00 4.26
3100 3896 0.252197 GCGTATCTGAGGGGGTTGTT 59.748 55.000 0.00 0.00 0.00 2.83
3101 3897 1.623542 GGCGTATCTGAGGGGGTTGT 61.624 60.000 0.00 0.00 0.00 3.32
3104 3900 2.064581 GTGGCGTATCTGAGGGGGT 61.065 63.158 0.00 0.00 0.00 4.95
3108 3904 2.033550 GTCACTAGTGGCGTATCTGAGG 59.966 54.545 22.48 0.00 0.00 3.86
3109 3905 3.341857 GTCACTAGTGGCGTATCTGAG 57.658 52.381 22.48 0.00 0.00 3.35
3129 3925 3.853103 TGGTGTTAATTCGTACGTCATCG 59.147 43.478 16.05 0.00 43.34 3.84
3163 3959 4.723309 CCCATTTTTGGGTGATTTGGAAA 58.277 39.130 2.72 0.00 44.08 3.13
3216 4016 2.053627 CTTGCTAGCTTTGGCAAAACG 58.946 47.619 17.23 4.49 45.80 3.60
3239 4043 3.680786 ACGTCGCACTGGCTAGCA 61.681 61.111 18.24 1.68 38.10 3.49
3240 4044 2.537792 TACACGTCGCACTGGCTAGC 62.538 60.000 6.04 6.04 38.10 3.42
3241 4045 0.797249 GTACACGTCGCACTGGCTAG 60.797 60.000 0.00 0.00 38.10 3.42
3242 4046 1.210931 GTACACGTCGCACTGGCTA 59.789 57.895 0.00 0.00 38.10 3.93
3265 4069 2.046023 TGGTCAGCTCATTGGCCG 60.046 61.111 0.00 0.00 45.97 6.13
3271 4075 0.689080 ATCCTCGGTGGTCAGCTCAT 60.689 55.000 0.00 0.00 37.07 2.90
3300 4104 7.336679 TGAGGATTTTATACTCCACACAACATG 59.663 37.037 0.00 0.00 39.62 3.21
3344 4152 0.605589 TATTTTTGGGCCGCCTGTTG 59.394 50.000 9.86 0.00 0.00 3.33
3356 4164 5.303747 TGTGGCTGGATAACGTATTTTTG 57.696 39.130 0.00 0.00 0.00 2.44
3403 4217 5.163374 ACCTCCCGGAGTATTTGTATTGTAC 60.163 44.000 13.62 0.00 0.00 2.90
3414 4228 0.469518 GTAGGCACCTCCCGGAGTAT 60.470 60.000 13.62 0.00 34.51 2.12
3415 4229 1.076485 GTAGGCACCTCCCGGAGTA 60.076 63.158 13.62 0.00 34.51 2.59
3416 4230 2.363925 GTAGGCACCTCCCGGAGT 60.364 66.667 13.62 0.00 34.51 3.85
3417 4231 2.898920 TACGTAGGCACCTCCCGGAG 62.899 65.000 0.73 7.56 34.51 4.63
3418 4232 2.497792 TTACGTAGGCACCTCCCGGA 62.498 60.000 0.73 2.34 34.51 5.14
3419 4233 1.397390 ATTACGTAGGCACCTCCCGG 61.397 60.000 11.84 0.00 34.51 5.73
3420 4234 0.249322 CATTACGTAGGCACCTCCCG 60.249 60.000 0.00 0.00 34.51 5.14
3421 4235 0.532196 GCATTACGTAGGCACCTCCC 60.532 60.000 14.25 0.00 34.51 4.30
3422 4236 0.532196 GGCATTACGTAGGCACCTCC 60.532 60.000 18.97 3.04 0.00 4.30
3423 4237 0.177141 TGGCATTACGTAGGCACCTC 59.823 55.000 18.97 6.16 35.21 3.85
3424 4238 2.292866 TGGCATTACGTAGGCACCT 58.707 52.632 18.97 0.00 35.21 4.00
3442 4262 2.035066 GCTGAAACTGGTGATTGCTTGT 59.965 45.455 0.00 0.00 0.00 3.16
3472 4292 9.371136 CTATGCTGATTTGTTGAAACTAGACTA 57.629 33.333 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.