Multiple sequence alignment - TraesCS6B01G448900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G448900 chr6B 100.000 3098 0 0 1 3098 708517758 708514661 0.000000e+00 5722.0
1 TraesCS6B01G448900 chr6B 88.917 794 39 25 2094 2863 708537027 708537795 0.000000e+00 933.0
2 TraesCS6B01G448900 chr6B 95.954 173 6 1 2854 3026 718474946 718474775 2.350000e-71 279.0
3 TraesCS6B01G448900 chr6B 93.548 186 11 1 2862 3046 559700499 559700314 3.040000e-70 276.0
4 TraesCS6B01G448900 chr6B 100.000 74 0 0 3025 3098 708537794 708537867 1.500000e-28 137.0
5 TraesCS6B01G448900 chr6D 92.253 2672 90 55 59 2668 464676316 464673700 0.000000e+00 3679.0
6 TraesCS6B01G448900 chr6D 89.101 734 38 22 2145 2863 464700435 464701141 0.000000e+00 874.0
7 TraesCS6B01G448900 chr6D 94.475 181 8 2 2683 2863 464673581 464673403 8.460000e-71 278.0
8 TraesCS6B01G448900 chr6D 91.339 127 6 2 2024 2149 464697403 464697525 5.310000e-38 169.0
9 TraesCS6B01G448900 chr6D 100.000 74 0 0 3025 3098 464673404 464673331 1.500000e-28 137.0
10 TraesCS6B01G448900 chr6D 100.000 74 0 0 3025 3098 464701140 464701213 1.500000e-28 137.0
11 TraesCS6B01G448900 chr6D 100.000 36 0 0 1 36 464676350 464676315 1.990000e-07 67.6
12 TraesCS6B01G448900 chr6A 92.999 2071 82 35 843 2863 611197141 611199198 0.000000e+00 2963.0
13 TraesCS6B01G448900 chr6A 91.825 844 24 24 1 824 611196338 611197156 0.000000e+00 1134.0
14 TraesCS6B01G448900 chr6A 98.649 74 1 0 3025 3098 611199197 611199270 6.970000e-27 132.0
15 TraesCS6B01G448900 chr7B 97.576 165 4 0 2862 3026 538750076 538750240 1.820000e-72 283.0
16 TraesCS6B01G448900 chr2B 96.988 166 5 0 2861 3026 137796663 137796828 2.350000e-71 279.0
17 TraesCS6B01G448900 chr2B 92.683 82 6 0 1737 1818 9724743 9724662 5.430000e-23 119.0
18 TraesCS6B01G448900 chr1B 96.988 166 5 0 2861 3026 2135179 2135014 2.350000e-71 279.0
19 TraesCS6B01G448900 chr1B 96.970 165 5 0 2862 3026 17692352 17692188 8.460000e-71 278.0
20 TraesCS6B01G448900 chr1B 94.444 36 2 0 1471 1506 404897850 404897815 4.320000e-04 56.5
21 TraesCS6B01G448900 chr3B 96.450 169 5 1 2862 3030 824012929 824013096 8.460000e-71 278.0
22 TraesCS6B01G448900 chr3B 95.858 169 7 0 2861 3029 22219693 22219861 1.090000e-69 274.0
23 TraesCS6B01G448900 chr5A 94.350 177 9 1 2853 3029 23642942 23643117 1.420000e-68 270.0
24 TraesCS6B01G448900 chr1A 85.714 63 9 0 1469 1531 22074502 22074440 1.990000e-07 67.6
25 TraesCS6B01G448900 chr1A 94.444 36 2 0 1471 1506 374278233 374278198 4.320000e-04 56.5
26 TraesCS6B01G448900 chr4A 94.444 36 2 0 35 70 14167298 14167263 4.320000e-04 56.5
27 TraesCS6B01G448900 chr1D 94.444 36 2 0 1471 1506 300025577 300025542 4.320000e-04 56.5
28 TraesCS6B01G448900 chr4D 100.000 29 0 0 42 70 453049083 453049111 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G448900 chr6B 708514661 708517758 3097 True 5722.000000 5722 100.0000 1 3098 1 chr6B.!!$R2 3097
1 TraesCS6B01G448900 chr6B 708537027 708537867 840 False 535.000000 933 94.4585 2094 3098 2 chr6B.!!$F1 1004
2 TraesCS6B01G448900 chr6D 464673331 464676350 3019 True 1040.400000 3679 96.6820 1 3098 4 chr6D.!!$R1 3097
3 TraesCS6B01G448900 chr6D 464697403 464701213 3810 False 393.333333 874 93.4800 2024 3098 3 chr6D.!!$F1 1074
4 TraesCS6B01G448900 chr6A 611196338 611199270 2932 False 1409.666667 2963 94.4910 1 3098 3 chr6A.!!$F1 3097

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 437 0.542805 TGGCCACCGGTCTATTAACC 59.457 55.0 2.59 0.0 35.86 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2416 5436 0.109532 TCGATCCAACTGGCCAAACA 59.89 50.0 7.01 0.0 34.44 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.021544 TGGCAACCAAACATACTCCAAATC 60.022 41.667 0.00 0.00 0.00 2.17
41 42 7.702348 GCAACCAAACATACTCCAAATCTATTC 59.298 37.037 0.00 0.00 0.00 1.75
42 43 8.739039 CAACCAAACATACTCCAAATCTATTCA 58.261 33.333 0.00 0.00 0.00 2.57
43 44 9.479549 AACCAAACATACTCCAAATCTATTCAT 57.520 29.630 0.00 0.00 0.00 2.57
44 45 9.125026 ACCAAACATACTCCAAATCTATTCATC 57.875 33.333 0.00 0.00 0.00 2.92
45 46 8.571336 CCAAACATACTCCAAATCTATTCATCC 58.429 37.037 0.00 0.00 0.00 3.51
46 47 9.123902 CAAACATACTCCAAATCTATTCATCCA 57.876 33.333 0.00 0.00 0.00 3.41
47 48 9.872684 AAACATACTCCAAATCTATTCATCCAT 57.127 29.630 0.00 0.00 0.00 3.41
48 49 9.512588 AACATACTCCAAATCTATTCATCCATC 57.487 33.333 0.00 0.00 0.00 3.51
75 76 6.291377 TCCATTCATTCATTCACCTAGCTAC 58.709 40.000 0.00 0.00 0.00 3.58
78 79 5.692115 TCATTCATTCACCTAGCTACCAA 57.308 39.130 0.00 0.00 0.00 3.67
79 80 5.674525 TCATTCATTCACCTAGCTACCAAG 58.325 41.667 0.00 0.00 0.00 3.61
146 155 7.265673 TCACTACACACTGCTTAATTAGGATC 58.734 38.462 0.00 0.00 0.00 3.36
153 162 5.525378 CACTGCTTAATTAGGATCCACAGAC 59.475 44.000 15.82 0.00 0.00 3.51
213 230 1.682087 GGGCAGGCTAAGTTAAGGGTG 60.682 57.143 0.00 0.00 0.00 4.61
419 436 2.285977 CTTGGCCACCGGTCTATTAAC 58.714 52.381 3.88 0.00 0.00 2.01
420 437 0.542805 TGGCCACCGGTCTATTAACC 59.457 55.000 2.59 0.00 35.86 2.85
490 507 4.202212 GCAATTAACCACCAAAACCACTCT 60.202 41.667 0.00 0.00 0.00 3.24
492 509 4.513406 TTAACCACCAAAACCACTCTCT 57.487 40.909 0.00 0.00 0.00 3.10
493 510 3.382083 AACCACCAAAACCACTCTCTT 57.618 42.857 0.00 0.00 0.00 2.85
494 511 2.932261 ACCACCAAAACCACTCTCTTC 58.068 47.619 0.00 0.00 0.00 2.87
495 512 2.509964 ACCACCAAAACCACTCTCTTCT 59.490 45.455 0.00 0.00 0.00 2.85
496 513 3.714798 ACCACCAAAACCACTCTCTTCTA 59.285 43.478 0.00 0.00 0.00 2.10
500 517 6.234177 CACCAAAACCACTCTCTTCTATCTT 58.766 40.000 0.00 0.00 0.00 2.40
516 533 9.613428 TCTTCTATCTTTCTCTCTCTAGACAAG 57.387 37.037 0.00 0.00 0.00 3.16
548 578 6.947464 TGGGAAGGTTATAAGAGTTGAGAAG 58.053 40.000 0.00 0.00 0.00 2.85
549 579 6.729100 TGGGAAGGTTATAAGAGTTGAGAAGA 59.271 38.462 0.00 0.00 0.00 2.87
550 580 7.093289 TGGGAAGGTTATAAGAGTTGAGAAGAG 60.093 40.741 0.00 0.00 0.00 2.85
551 581 7.124448 GGGAAGGTTATAAGAGTTGAGAAGAGA 59.876 40.741 0.00 0.00 0.00 3.10
552 582 8.700973 GGAAGGTTATAAGAGTTGAGAAGAGAT 58.299 37.037 0.00 0.00 0.00 2.75
553 583 9.744468 GAAGGTTATAAGAGTTGAGAAGAGATC 57.256 37.037 0.00 0.00 0.00 2.75
554 584 8.830915 AGGTTATAAGAGTTGAGAAGAGATCA 57.169 34.615 0.00 0.00 0.00 2.92
555 585 8.912988 AGGTTATAAGAGTTGAGAAGAGATCAG 58.087 37.037 0.00 0.00 0.00 2.90
629 661 4.460382 CAGCTCTCTCTTGTTCTCTCTCTT 59.540 45.833 0.00 0.00 0.00 2.85
631 663 5.047802 AGCTCTCTCTTGTTCTCTCTCTTTG 60.048 44.000 0.00 0.00 0.00 2.77
661 696 6.216662 TGGGGGTGTTAATTTTCTCTCTCATA 59.783 38.462 0.00 0.00 0.00 2.15
683 718 8.849168 TCATATCTAGAGAGAGAAAGCTTTCTG 58.151 37.037 39.32 24.88 46.84 3.02
696 736 5.948742 AAGCTTTCTGTCTATCTAGGCTT 57.051 39.130 0.00 0.00 33.51 4.35
698 738 3.807071 GCTTTCTGTCTATCTAGGCTTGC 59.193 47.826 0.00 0.00 0.00 4.01
699 739 4.442753 GCTTTCTGTCTATCTAGGCTTGCT 60.443 45.833 0.00 0.00 0.00 3.91
700 740 5.669477 CTTTCTGTCTATCTAGGCTTGCTT 58.331 41.667 0.00 0.00 0.00 3.91
701 741 4.662468 TCTGTCTATCTAGGCTTGCTTG 57.338 45.455 0.00 0.00 0.00 4.01
702 742 3.129871 CTGTCTATCTAGGCTTGCTTGC 58.870 50.000 0.00 0.00 0.00 4.01
703 743 2.768527 TGTCTATCTAGGCTTGCTTGCT 59.231 45.455 0.00 0.00 0.00 3.91
704 744 3.198635 TGTCTATCTAGGCTTGCTTGCTT 59.801 43.478 0.00 0.00 0.00 3.91
770 810 2.074729 AGAGTAGTAGCTGCCGGATT 57.925 50.000 5.05 0.00 0.00 3.01
780 820 1.876322 CTGCCGGATTCATCTCTTCC 58.124 55.000 5.05 0.00 0.00 3.46
781 821 1.139654 CTGCCGGATTCATCTCTTCCA 59.860 52.381 5.05 0.00 0.00 3.53
822 867 2.038387 AACGCCTCTCTCTCTCTCTC 57.962 55.000 0.00 0.00 0.00 3.20
823 868 1.204146 ACGCCTCTCTCTCTCTCTCT 58.796 55.000 0.00 0.00 0.00 3.10
824 869 1.139058 ACGCCTCTCTCTCTCTCTCTC 59.861 57.143 0.00 0.00 0.00 3.20
825 870 1.414181 CGCCTCTCTCTCTCTCTCTCT 59.586 57.143 0.00 0.00 0.00 3.10
826 871 2.546795 CGCCTCTCTCTCTCTCTCTCTC 60.547 59.091 0.00 0.00 0.00 3.20
827 872 2.703007 GCCTCTCTCTCTCTCTCTCTCT 59.297 54.545 0.00 0.00 0.00 3.10
828 873 3.244044 GCCTCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
829 874 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
830 875 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
831 876 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1164 1223 3.707640 CTCCTCCGCGTCCTCCTCT 62.708 68.421 4.92 0.00 0.00 3.69
1631 1702 4.961511 GACAGCGTCGCCACCACA 62.962 66.667 14.86 0.00 0.00 4.17
1845 1916 3.849953 GCCGATCGCGTCACAACC 61.850 66.667 10.32 0.00 35.23 3.77
1848 1919 2.726691 CGATCGCGTCACAACCACC 61.727 63.158 5.77 0.00 0.00 4.61
1850 1921 1.897398 GATCGCGTCACAACCACCAC 61.897 60.000 5.77 0.00 0.00 4.16
1851 1922 3.645975 CGCGTCACAACCACCACC 61.646 66.667 0.00 0.00 0.00 4.61
1852 1923 3.645975 GCGTCACAACCACCACCG 61.646 66.667 0.00 0.00 0.00 4.94
1853 1924 3.645975 CGTCACAACCACCACCGC 61.646 66.667 0.00 0.00 0.00 5.68
1854 1925 2.203153 GTCACAACCACCACCGCT 60.203 61.111 0.00 0.00 0.00 5.52
1855 1926 2.203139 TCACAACCACCACCGCTG 60.203 61.111 0.00 0.00 0.00 5.18
2122 2208 4.175489 GTCGCATGCAGCTGGCTG 62.175 66.667 19.57 17.16 45.15 4.85
2337 5356 9.772973 ATGTATATGTACCATGTAAACACGATT 57.227 29.630 0.00 0.00 0.00 3.34
2340 5359 8.902540 ATATGTACCATGTAAACACGATTGAT 57.097 30.769 0.00 0.00 0.00 2.57
2416 5436 4.276926 GTGACCTGTGAGCAGAAGAAAAAT 59.723 41.667 0.00 0.00 45.28 1.82
2638 5684 2.035704 TGCCCACATGCAAGTACAAAAG 59.964 45.455 0.00 0.00 38.56 2.27
2789 5948 8.924691 TGCTTCACTGTTAATTGCATTTAATTC 58.075 29.630 14.88 6.08 32.79 2.17
2790 5949 8.924691 GCTTCACTGTTAATTGCATTTAATTCA 58.075 29.630 14.88 9.51 32.79 2.57
2861 6020 4.322567 GTTTCCTCTTGATCAAGTCAGCT 58.677 43.478 29.80 0.00 38.29 4.24
2862 6021 5.482908 GTTTCCTCTTGATCAAGTCAGCTA 58.517 41.667 29.80 12.62 38.29 3.32
2863 6022 4.727507 TCCTCTTGATCAAGTCAGCTAC 57.272 45.455 29.80 0.00 38.29 3.58
2864 6023 4.348486 TCCTCTTGATCAAGTCAGCTACT 58.652 43.478 29.80 0.00 41.49 2.57
2865 6024 4.400884 TCCTCTTGATCAAGTCAGCTACTC 59.599 45.833 29.80 0.00 37.50 2.59
2866 6025 4.441356 CCTCTTGATCAAGTCAGCTACTCC 60.441 50.000 29.80 0.00 37.50 3.85
2867 6026 3.449018 TCTTGATCAAGTCAGCTACTCCC 59.551 47.826 29.80 0.00 37.50 4.30
2868 6027 3.107402 TGATCAAGTCAGCTACTCCCT 57.893 47.619 0.00 0.00 37.50 4.20
2869 6028 3.027412 TGATCAAGTCAGCTACTCCCTC 58.973 50.000 0.00 0.00 37.50 4.30
2870 6029 1.853963 TCAAGTCAGCTACTCCCTCC 58.146 55.000 0.00 0.00 37.50 4.30
2871 6030 0.457851 CAAGTCAGCTACTCCCTCCG 59.542 60.000 0.00 0.00 37.50 4.63
2872 6031 0.039911 AAGTCAGCTACTCCCTCCGT 59.960 55.000 0.00 0.00 37.50 4.69
2873 6032 0.039911 AGTCAGCTACTCCCTCCGTT 59.960 55.000 0.00 0.00 30.33 4.44
2874 6033 0.456628 GTCAGCTACTCCCTCCGTTC 59.543 60.000 0.00 0.00 0.00 3.95
2875 6034 0.683504 TCAGCTACTCCCTCCGTTCC 60.684 60.000 0.00 0.00 0.00 3.62
2876 6035 1.381463 AGCTACTCCCTCCGTTCCC 60.381 63.158 0.00 0.00 0.00 3.97
2877 6036 1.684734 GCTACTCCCTCCGTTCCCA 60.685 63.158 0.00 0.00 0.00 4.37
2878 6037 1.262640 GCTACTCCCTCCGTTCCCAA 61.263 60.000 0.00 0.00 0.00 4.12
2879 6038 1.272807 CTACTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
2880 6039 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
2881 6040 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2882 6041 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2883 6042 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
2884 6043 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
2885 6044 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
2886 6045 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
2887 6046 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
2888 6047 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
2889 6048 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
2890 6049 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
2891 6050 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
2892 6051 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
2893 6052 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
2894 6053 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
2895 6054 6.967199 CGTTCCCAAATATTTGTCTTTCTAGC 59.033 38.462 23.24 6.16 36.45 3.42
2896 6055 7.258441 GTTCCCAAATATTTGTCTTTCTAGCC 58.742 38.462 23.24 0.99 36.45 3.93
2897 6056 6.489603 TCCCAAATATTTGTCTTTCTAGCCA 58.510 36.000 23.24 0.00 36.45 4.75
2898 6057 7.125391 TCCCAAATATTTGTCTTTCTAGCCAT 58.875 34.615 23.24 0.00 36.45 4.40
2899 6058 7.285401 TCCCAAATATTTGTCTTTCTAGCCATC 59.715 37.037 23.24 0.00 36.45 3.51
2900 6059 7.286316 CCCAAATATTTGTCTTTCTAGCCATCT 59.714 37.037 23.24 0.00 36.45 2.90
2901 6060 8.348507 CCAAATATTTGTCTTTCTAGCCATCTC 58.651 37.037 23.24 0.00 36.45 2.75
2902 6061 8.896744 CAAATATTTGTCTTTCTAGCCATCTCA 58.103 33.333 18.32 0.00 33.59 3.27
2903 6062 9.466497 AAATATTTGTCTTTCTAGCCATCTCAA 57.534 29.630 0.00 0.00 0.00 3.02
2904 6063 9.466497 AATATTTGTCTTTCTAGCCATCTCAAA 57.534 29.630 0.00 0.00 0.00 2.69
2905 6064 7.951347 ATTTGTCTTTCTAGCCATCTCAAAT 57.049 32.000 0.00 0.00 0.00 2.32
2906 6065 6.748333 TTGTCTTTCTAGCCATCTCAAATG 57.252 37.500 0.00 0.00 0.00 2.32
2907 6066 5.188434 TGTCTTTCTAGCCATCTCAAATGG 58.812 41.667 0.00 0.00 41.99 3.16
2908 6067 5.045651 TGTCTTTCTAGCCATCTCAAATGGA 60.046 40.000 8.23 0.00 41.64 3.41
2909 6068 5.295540 GTCTTTCTAGCCATCTCAAATGGAC 59.704 44.000 8.23 0.19 41.64 4.02
2910 6069 5.190528 TCTTTCTAGCCATCTCAAATGGACT 59.809 40.000 8.23 7.12 41.64 3.85
2911 6070 6.384015 TCTTTCTAGCCATCTCAAATGGACTA 59.616 38.462 8.23 7.79 41.64 2.59
2912 6071 5.537300 TCTAGCCATCTCAAATGGACTAC 57.463 43.478 8.23 0.00 41.64 2.73
2913 6072 4.962362 TCTAGCCATCTCAAATGGACTACA 59.038 41.667 8.23 0.00 41.64 2.74
2914 6073 4.574674 AGCCATCTCAAATGGACTACAA 57.425 40.909 8.23 0.00 41.64 2.41
2915 6074 4.265073 AGCCATCTCAAATGGACTACAAC 58.735 43.478 8.23 0.00 41.64 3.32
2916 6075 4.009675 GCCATCTCAAATGGACTACAACA 58.990 43.478 8.23 0.00 41.64 3.33
2917 6076 4.641989 GCCATCTCAAATGGACTACAACAT 59.358 41.667 8.23 0.00 41.64 2.71
2918 6077 5.822519 GCCATCTCAAATGGACTACAACATA 59.177 40.000 8.23 0.00 41.64 2.29
2919 6078 6.238484 GCCATCTCAAATGGACTACAACATAC 60.238 42.308 8.23 0.00 41.64 2.39
2920 6079 6.018751 CCATCTCAAATGGACTACAACATACG 60.019 42.308 0.00 0.00 41.64 3.06
2921 6080 5.416083 TCTCAAATGGACTACAACATACGG 58.584 41.667 0.00 0.00 0.00 4.02
2922 6081 5.186215 TCTCAAATGGACTACAACATACGGA 59.814 40.000 0.00 0.00 0.00 4.69
2923 6082 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
2924 6083 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
2926 6085 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
2927 6086 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
2943 6102 8.780846 ACGGATGTATGTAGACATGTTTTAAA 57.219 30.769 0.00 0.00 40.18 1.52
2944 6103 9.391006 ACGGATGTATGTAGACATGTTTTAAAT 57.609 29.630 0.00 0.00 40.18 1.40
2967 6126 9.860898 AAATTGTAGATTTACTCATTTTGCTCC 57.139 29.630 0.00 0.00 0.00 4.70
2968 6127 7.994425 TTGTAGATTTACTCATTTTGCTCCA 57.006 32.000 0.00 0.00 0.00 3.86
2969 6128 8.579850 TTGTAGATTTACTCATTTTGCTCCAT 57.420 30.769 0.00 0.00 0.00 3.41
2970 6129 9.679661 TTGTAGATTTACTCATTTTGCTCCATA 57.320 29.630 0.00 0.00 0.00 2.74
2971 6130 9.851686 TGTAGATTTACTCATTTTGCTCCATAT 57.148 29.630 0.00 0.00 0.00 1.78
2973 6132 8.757982 AGATTTACTCATTTTGCTCCATATGT 57.242 30.769 1.24 0.00 0.00 2.29
2974 6133 9.851686 AGATTTACTCATTTTGCTCCATATGTA 57.148 29.630 1.24 0.00 0.00 2.29
2976 6135 9.632638 ATTTACTCATTTTGCTCCATATGTAGT 57.367 29.630 1.24 0.00 0.00 2.73
2977 6136 8.662781 TTACTCATTTTGCTCCATATGTAGTC 57.337 34.615 1.24 0.00 0.00 2.59
2978 6137 6.653020 ACTCATTTTGCTCCATATGTAGTCA 58.347 36.000 1.24 0.00 0.00 3.41
2979 6138 7.285566 ACTCATTTTGCTCCATATGTAGTCAT 58.714 34.615 1.24 0.00 38.00 3.06
2980 6139 7.776969 ACTCATTTTGCTCCATATGTAGTCATT 59.223 33.333 1.24 0.00 35.70 2.57
2981 6140 8.523915 TCATTTTGCTCCATATGTAGTCATTT 57.476 30.769 1.24 0.00 35.70 2.32
2982 6141 8.407832 TCATTTTGCTCCATATGTAGTCATTTG 58.592 33.333 1.24 0.00 35.70 2.32
2983 6142 7.701539 TTTTGCTCCATATGTAGTCATTTGT 57.298 32.000 1.24 0.00 35.70 2.83
2984 6143 7.701539 TTTGCTCCATATGTAGTCATTTGTT 57.298 32.000 1.24 0.00 35.70 2.83
2985 6144 6.682423 TGCTCCATATGTAGTCATTTGTTG 57.318 37.500 1.24 0.00 35.70 3.33
2986 6145 6.413892 TGCTCCATATGTAGTCATTTGTTGA 58.586 36.000 1.24 0.00 35.70 3.18
2987 6146 6.883756 TGCTCCATATGTAGTCATTTGTTGAA 59.116 34.615 1.24 0.00 35.70 2.69
2988 6147 7.392953 TGCTCCATATGTAGTCATTTGTTGAAA 59.607 33.333 1.24 0.00 35.70 2.69
2989 6148 8.408601 GCTCCATATGTAGTCATTTGTTGAAAT 58.591 33.333 1.24 0.00 35.70 2.17
3017 6176 9.595823 TCTAGAAAGACAATTATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3018 6177 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3019 6178 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3020 6179 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3021 6180 5.681639 AGACAATTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3022 6181 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3023 6182 5.681639 ACAATTATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.614192 TGAATGAATGGATGGATGGATGAATAG 59.386 37.037 0.00 0.00 0.00 1.73
41 42 6.210584 TGAATGAATGAATGGATGGATGGATG 59.789 38.462 0.00 0.00 0.00 3.51
42 43 6.210784 GTGAATGAATGAATGGATGGATGGAT 59.789 38.462 0.00 0.00 0.00 3.41
43 44 5.537295 GTGAATGAATGAATGGATGGATGGA 59.463 40.000 0.00 0.00 0.00 3.41
44 45 5.279306 GGTGAATGAATGAATGGATGGATGG 60.279 44.000 0.00 0.00 0.00 3.51
45 46 5.538813 AGGTGAATGAATGAATGGATGGATG 59.461 40.000 0.00 0.00 0.00 3.51
46 47 5.712752 AGGTGAATGAATGAATGGATGGAT 58.287 37.500 0.00 0.00 0.00 3.41
47 48 5.133383 AGGTGAATGAATGAATGGATGGA 57.867 39.130 0.00 0.00 0.00 3.41
48 49 5.048224 GCTAGGTGAATGAATGAATGGATGG 60.048 44.000 0.00 0.00 0.00 3.51
84 85 1.939255 GAAGCAAAGCCAGCTAGCTAG 59.061 52.381 18.86 16.84 44.11 3.42
85 86 1.278985 TGAAGCAAAGCCAGCTAGCTA 59.721 47.619 18.86 0.00 44.11 3.32
94 103 3.863142 ATCTTGTGATGAAGCAAAGCC 57.137 42.857 0.00 0.00 0.00 4.35
199 216 7.501225 TGAATTAATAGCCACCCTTAACTTAGC 59.499 37.037 0.00 0.00 0.00 3.09
213 230 5.698545 CCACTACTGCTCTGAATTAATAGCC 59.301 44.000 5.67 0.00 33.99 3.93
420 437 6.267242 GTGGAAACTAGTAATAGTAGAGGGGG 59.733 46.154 8.98 0.00 0.00 5.40
490 507 9.613428 CTTGTCTAGAGAGAGAAAGATAGAAGA 57.387 37.037 0.00 0.00 34.75 2.87
516 533 6.780522 ACTCTTATAACCTTCCCATCTCTCTC 59.219 42.308 0.00 0.00 0.00 3.20
518 535 6.987403 ACTCTTATAACCTTCCCATCTCTC 57.013 41.667 0.00 0.00 0.00 3.20
524 541 6.729100 TCTTCTCAACTCTTATAACCTTCCCA 59.271 38.462 0.00 0.00 0.00 4.37
548 578 1.714541 TGGATGCCTCTCCTGATCTC 58.285 55.000 0.00 0.00 36.20 2.75
549 579 2.187239 TTGGATGCCTCTCCTGATCT 57.813 50.000 0.00 0.00 36.20 2.75
550 580 3.118112 TCTTTTGGATGCCTCTCCTGATC 60.118 47.826 0.00 0.00 36.20 2.92
551 581 2.848694 TCTTTTGGATGCCTCTCCTGAT 59.151 45.455 0.00 0.00 36.20 2.90
552 582 2.026822 GTCTTTTGGATGCCTCTCCTGA 60.027 50.000 0.00 0.00 36.20 3.86
553 583 2.290514 TGTCTTTTGGATGCCTCTCCTG 60.291 50.000 0.00 0.00 36.20 3.86
554 584 1.988107 TGTCTTTTGGATGCCTCTCCT 59.012 47.619 0.00 0.00 36.20 3.69
555 585 2.496899 TGTCTTTTGGATGCCTCTCC 57.503 50.000 0.00 0.00 35.74 3.71
629 661 2.757894 ATTAACACCCCCACACACAA 57.242 45.000 0.00 0.00 0.00 3.33
631 663 3.639561 AGAAAATTAACACCCCCACACAC 59.360 43.478 0.00 0.00 0.00 3.82
661 696 6.891908 AGACAGAAAGCTTTCTCTCTCTAGAT 59.108 38.462 33.73 15.15 45.23 1.98
679 714 4.681781 GCAAGCAAGCCTAGATAGACAGAA 60.682 45.833 0.00 0.00 0.00 3.02
683 718 3.467374 AGCAAGCAAGCCTAGATAGAC 57.533 47.619 0.00 0.00 34.23 2.59
696 736 0.249155 GACAAGCAAGCAAGCAAGCA 60.249 50.000 10.52 0.00 36.85 3.91
698 738 0.386476 TGGACAAGCAAGCAAGCAAG 59.614 50.000 3.19 0.00 36.85 4.01
699 739 1.042229 ATGGACAAGCAAGCAAGCAA 58.958 45.000 3.19 0.00 36.85 3.91
700 740 1.042229 AATGGACAAGCAAGCAAGCA 58.958 45.000 3.19 0.00 36.85 3.91
701 741 1.000060 TCAATGGACAAGCAAGCAAGC 60.000 47.619 0.00 0.00 0.00 4.01
702 742 3.587797 ATCAATGGACAAGCAAGCAAG 57.412 42.857 0.00 0.00 0.00 4.01
703 743 4.766373 TCTAATCAATGGACAAGCAAGCAA 59.234 37.500 0.00 0.00 0.00 3.91
704 744 4.334552 TCTAATCAATGGACAAGCAAGCA 58.665 39.130 0.00 0.00 0.00 3.91
770 810 7.774625 TGCACATATAACAAATGGAAGAGATGA 59.225 33.333 0.00 0.00 0.00 2.92
780 820 6.964741 TTTGCCTTGCACATATAACAAATG 57.035 33.333 0.00 0.00 38.71 2.32
781 821 6.090628 CGTTTTGCCTTGCACATATAACAAAT 59.909 34.615 0.00 0.00 38.71 2.32
822 867 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
823 868 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
824 869 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
825 870 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
826 871 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
827 872 3.051803 AGGGAGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
828 873 3.312890 AGGGAGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
829 874 3.051803 AGAGGGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
830 875 3.312890 AGAGGGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
831 876 3.051803 AGAGAGGGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1164 1223 2.523168 TCGGTGGTGGTGCTCTCA 60.523 61.111 0.00 0.00 0.00 3.27
1297 1356 3.479269 CGGAGGAAGCAACGACGC 61.479 66.667 0.00 0.00 0.00 5.19
1419 1478 1.198408 CACTCGTACACGTAGAAGCCA 59.802 52.381 1.19 0.00 40.80 4.75
1838 1909 2.203139 CAGCGGTGGTGGTTGTGA 60.203 61.111 6.74 0.00 0.00 3.58
1884 1955 1.594331 GGGTGCTGTCTTTCTTCGTT 58.406 50.000 0.00 0.00 0.00 3.85
2121 2207 3.695830 AGTAAAGAATTCGTCAGGCCA 57.304 42.857 5.01 0.00 0.00 5.36
2122 2208 5.181433 AGAAAAGTAAAGAATTCGTCAGGCC 59.819 40.000 0.00 0.00 0.00 5.19
2123 2209 6.242508 AGAAAAGTAAAGAATTCGTCAGGC 57.757 37.500 0.00 0.00 0.00 4.85
2124 2210 9.595357 GTTAAGAAAAGTAAAGAATTCGTCAGG 57.405 33.333 0.00 0.00 0.00 3.86
2126 2212 9.925268 GTGTTAAGAAAAGTAAAGAATTCGTCA 57.075 29.630 0.00 0.00 0.00 4.35
2127 2213 9.378597 GGTGTTAAGAAAAGTAAAGAATTCGTC 57.621 33.333 0.00 0.00 0.00 4.20
2266 5280 4.142038 AGTCAACCTTACGCCAAAGAATT 58.858 39.130 0.00 0.00 0.00 2.17
2337 5356 9.743581 ATATTTCAGCACCAATATACATGATCA 57.256 29.630 0.00 0.00 0.00 2.92
2416 5436 0.109532 TCGATCCAACTGGCCAAACA 59.890 50.000 7.01 0.00 34.44 2.83
2789 5948 4.232221 GACTGTCCACTTGATGCATTTTG 58.768 43.478 0.00 0.00 0.00 2.44
2790 5949 3.058016 CGACTGTCCACTTGATGCATTTT 60.058 43.478 0.00 0.00 0.00 1.82
2795 5954 1.512926 AACGACTGTCCACTTGATGC 58.487 50.000 1.55 0.00 0.00 3.91
2861 6020 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2862 6021 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2863 6022 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
2864 6023 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
2865 6024 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
2866 6025 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
2867 6026 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
2868 6027 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
2869 6028 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
2870 6029 6.967199 GCTAGAAAGACAAATATTTGGGAACG 59.033 38.462 27.43 11.81 42.34 3.95
2871 6030 7.093945 TGGCTAGAAAGACAAATATTTGGGAAC 60.094 37.037 27.43 16.80 38.01 3.62
2872 6031 6.951198 TGGCTAGAAAGACAAATATTTGGGAA 59.049 34.615 27.43 8.61 38.01 3.97
2873 6032 6.489603 TGGCTAGAAAGACAAATATTTGGGA 58.510 36.000 27.43 7.59 38.01 4.37
2874 6033 6.773976 TGGCTAGAAAGACAAATATTTGGG 57.226 37.500 27.43 8.32 38.01 4.12
2875 6034 8.230472 AGATGGCTAGAAAGACAAATATTTGG 57.770 34.615 27.43 12.85 46.32 3.28
2876 6035 8.896744 TGAGATGGCTAGAAAGACAAATATTTG 58.103 33.333 23.60 23.60 46.32 2.32
2877 6036 9.466497 TTGAGATGGCTAGAAAGACAAATATTT 57.534 29.630 0.00 0.00 46.32 1.40
2878 6037 9.466497 TTTGAGATGGCTAGAAAGACAAATATT 57.534 29.630 0.00 0.00 46.32 1.28
2879 6038 9.638176 ATTTGAGATGGCTAGAAAGACAAATAT 57.362 29.630 0.00 0.00 46.32 1.28
2880 6039 8.896744 CATTTGAGATGGCTAGAAAGACAAATA 58.103 33.333 0.00 0.00 46.32 1.40
2881 6040 7.147949 CCATTTGAGATGGCTAGAAAGACAAAT 60.148 37.037 0.00 0.00 46.32 2.32
2882 6041 6.151648 CCATTTGAGATGGCTAGAAAGACAAA 59.848 38.462 0.00 0.00 46.32 2.83
2883 6042 5.649395 CCATTTGAGATGGCTAGAAAGACAA 59.351 40.000 0.00 0.00 46.32 3.18
2885 6044 5.295540 GTCCATTTGAGATGGCTAGAAAGAC 59.704 44.000 0.00 0.00 39.01 3.01
2886 6045 5.190528 AGTCCATTTGAGATGGCTAGAAAGA 59.809 40.000 0.00 0.00 39.01 2.52
2887 6046 5.435291 AGTCCATTTGAGATGGCTAGAAAG 58.565 41.667 0.00 0.00 39.01 2.62
2888 6047 5.441718 AGTCCATTTGAGATGGCTAGAAA 57.558 39.130 0.00 0.00 39.01 2.52
2889 6048 5.425217 TGTAGTCCATTTGAGATGGCTAGAA 59.575 40.000 0.00 0.00 39.01 2.10
2890 6049 4.962362 TGTAGTCCATTTGAGATGGCTAGA 59.038 41.667 0.00 0.00 39.01 2.43
2891 6050 5.282055 TGTAGTCCATTTGAGATGGCTAG 57.718 43.478 0.00 0.00 39.01 3.42
2892 6051 5.045942 TGTTGTAGTCCATTTGAGATGGCTA 60.046 40.000 0.00 0.33 39.01 3.93
2893 6052 4.263462 TGTTGTAGTCCATTTGAGATGGCT 60.263 41.667 0.00 1.24 39.01 4.75
2894 6053 4.009675 TGTTGTAGTCCATTTGAGATGGC 58.990 43.478 0.00 0.00 39.01 4.40
2895 6054 6.018751 CGTATGTTGTAGTCCATTTGAGATGG 60.019 42.308 0.00 0.00 40.48 3.51
2896 6055 6.018751 CCGTATGTTGTAGTCCATTTGAGATG 60.019 42.308 0.00 0.00 0.00 2.90
2897 6056 6.049149 CCGTATGTTGTAGTCCATTTGAGAT 58.951 40.000 0.00 0.00 0.00 2.75
2898 6057 5.186215 TCCGTATGTTGTAGTCCATTTGAGA 59.814 40.000 0.00 0.00 0.00 3.27
2899 6058 5.416083 TCCGTATGTTGTAGTCCATTTGAG 58.584 41.667 0.00 0.00 0.00 3.02
2900 6059 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
2901 6060 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
2902 6061 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
2903 6062 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
2904 6063 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
2905 6064 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
2917 6076 9.872721 TTTAAAACATGTCTACATACATCCGTA 57.127 29.630 0.00 0.00 38.01 4.02
2918 6077 8.780846 TTTAAAACATGTCTACATACATCCGT 57.219 30.769 0.00 0.00 38.01 4.69
2941 6100 9.860898 GGAGCAAAATGAGTAAATCTACAATTT 57.139 29.630 0.00 0.00 32.30 1.82
2942 6101 9.023962 TGGAGCAAAATGAGTAAATCTACAATT 57.976 29.630 0.00 0.00 0.00 2.32
2943 6102 8.579850 TGGAGCAAAATGAGTAAATCTACAAT 57.420 30.769 0.00 0.00 0.00 2.71
2944 6103 7.994425 TGGAGCAAAATGAGTAAATCTACAA 57.006 32.000 0.00 0.00 0.00 2.41
2945 6104 9.851686 ATATGGAGCAAAATGAGTAAATCTACA 57.148 29.630 0.00 0.00 0.00 2.74
2947 6106 9.851686 ACATATGGAGCAAAATGAGTAAATCTA 57.148 29.630 7.80 0.00 0.00 1.98
2948 6107 8.757982 ACATATGGAGCAAAATGAGTAAATCT 57.242 30.769 7.80 0.00 0.00 2.40
2950 6109 9.632638 ACTACATATGGAGCAAAATGAGTAAAT 57.367 29.630 15.30 0.00 0.00 1.40
2951 6110 9.109393 GACTACATATGGAGCAAAATGAGTAAA 57.891 33.333 15.30 0.00 0.00 2.01
2952 6111 8.264347 TGACTACATATGGAGCAAAATGAGTAA 58.736 33.333 15.30 0.00 0.00 2.24
2953 6112 7.791029 TGACTACATATGGAGCAAAATGAGTA 58.209 34.615 15.30 0.00 0.00 2.59
2954 6113 6.653020 TGACTACATATGGAGCAAAATGAGT 58.347 36.000 15.30 0.00 0.00 3.41
2955 6114 7.741027 ATGACTACATATGGAGCAAAATGAG 57.259 36.000 15.30 0.00 34.71 2.90
2956 6115 8.407832 CAAATGACTACATATGGAGCAAAATGA 58.592 33.333 15.30 0.00 35.50 2.57
2957 6116 8.192774 ACAAATGACTACATATGGAGCAAAATG 58.807 33.333 15.30 11.15 35.50 2.32
2958 6117 8.297470 ACAAATGACTACATATGGAGCAAAAT 57.703 30.769 15.30 0.99 35.50 1.82
2959 6118 7.701539 ACAAATGACTACATATGGAGCAAAA 57.298 32.000 15.30 0.00 35.50 2.44
2960 6119 7.392953 TCAACAAATGACTACATATGGAGCAAA 59.607 33.333 15.30 1.04 35.50 3.68
2961 6120 6.883756 TCAACAAATGACTACATATGGAGCAA 59.116 34.615 15.30 3.70 35.50 3.91
2962 6121 6.413892 TCAACAAATGACTACATATGGAGCA 58.586 36.000 15.30 13.71 35.50 4.26
2963 6122 6.925610 TCAACAAATGACTACATATGGAGC 57.074 37.500 15.30 8.47 35.50 4.70
2991 6150 9.595823 CCGTTCCTAAATAATTGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
2992 6151 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
2993 6152 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
2994 6153 7.553044 CCTCCGTTCCTAAATAATTGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
2995 6154 7.201705 CCCTCCGTTCCTAAATAATTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
2996 6155 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
2997 6156 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
2998 6157 5.427481 TCCCTCCGTTCCTAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
2999 6158 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
3000 6159 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
3001 6160 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
3002 6161 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
3003 6162 6.141790 ACTACTCCCTCCGTTCCTAAATAAT 58.858 40.000 0.00 0.00 0.00 1.28
3004 6163 5.522641 ACTACTCCCTCCGTTCCTAAATAA 58.477 41.667 0.00 0.00 0.00 1.40
3005 6164 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3006 6165 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3007 6166 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3008 6167 4.414846 AGATACTACTCCCTCCGTTCCTAA 59.585 45.833 0.00 0.00 0.00 2.69
3009 6168 3.979347 AGATACTACTCCCTCCGTTCCTA 59.021 47.826 0.00 0.00 0.00 2.94
3010 6169 2.784682 AGATACTACTCCCTCCGTTCCT 59.215 50.000 0.00 0.00 0.00 3.36
3011 6170 3.226682 AGATACTACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
3012 6171 4.971939 ACTAGATACTACTCCCTCCGTTC 58.028 47.826 0.00 0.00 0.00 3.95
3013 6172 5.512921 GCTACTAGATACTACTCCCTCCGTT 60.513 48.000 0.00 0.00 0.00 4.44
3014 6173 4.020307 GCTACTAGATACTACTCCCTCCGT 60.020 50.000 0.00 0.00 0.00 4.69
3015 6174 4.223477 AGCTACTAGATACTACTCCCTCCG 59.777 50.000 0.00 0.00 0.00 4.63
3016 6175 5.767277 AGCTACTAGATACTACTCCCTCC 57.233 47.826 0.00 0.00 0.00 4.30
3017 6176 6.536447 ACAAGCTACTAGATACTACTCCCTC 58.464 44.000 0.00 0.00 0.00 4.30
3018 6177 6.518516 ACAAGCTACTAGATACTACTCCCT 57.481 41.667 0.00 0.00 0.00 4.20
3019 6178 6.515365 GCAACAAGCTACTAGATACTACTCCC 60.515 46.154 0.00 0.00 41.15 4.30
3020 6179 6.039493 TGCAACAAGCTACTAGATACTACTCC 59.961 42.308 0.00 0.00 45.94 3.85
3021 6180 7.028926 TGCAACAAGCTACTAGATACTACTC 57.971 40.000 0.00 0.00 45.94 2.59
3022 6181 6.603997 ACTGCAACAAGCTACTAGATACTACT 59.396 38.462 0.00 0.00 45.94 2.57
3023 6182 6.797454 ACTGCAACAAGCTACTAGATACTAC 58.203 40.000 0.00 0.00 45.94 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.