Multiple sequence alignment - TraesCS6B01G448800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G448800 chr6B 100.000 3736 0 0 1 3736 708274102 708270367 0.000000e+00 6900.0
1 TraesCS6B01G448800 chr6B 92.357 157 11 1 3436 3592 708270523 708270368 4.860000e-54 222.0
2 TraesCS6B01G448800 chr6B 92.357 157 11 1 3580 3735 708270667 708270511 4.860000e-54 222.0
3 TraesCS6B01G448800 chr6D 93.099 2246 107 29 983 3205 464497027 464494807 0.000000e+00 3245.0
4 TraesCS6B01G448800 chr6D 89.555 517 28 12 481 979 464497576 464497068 1.890000e-177 632.0
5 TraesCS6B01G448800 chr6D 85.142 424 29 13 93 493 464497943 464497531 1.620000e-108 403.0
6 TraesCS6B01G448800 chr6D 88.172 93 4 2 47 139 464498028 464497943 1.840000e-18 104.0
7 TraesCS6B01G448800 chr6D 93.750 48 3 0 3396 3443 464494325 464494278 5.180000e-09 73.1
8 TraesCS6B01G448800 chr6D 95.000 40 2 0 3441 3480 464494264 464494225 3.120000e-06 63.9
9 TraesCS6B01G448800 chr6D 100.000 28 0 0 2470 2497 163135298 163135271 7.000000e-03 52.8
10 TraesCS6B01G448800 chr6A 89.646 2376 142 53 983 3303 611079493 611077167 0.000000e+00 2929.0
11 TraesCS6B01G448800 chr6A 85.307 456 19 13 47 463 611080490 611080044 9.590000e-116 427.0
12 TraesCS6B01G448800 chr6A 82.342 521 27 33 481 969 611080058 611079571 3.500000e-105 392.0
13 TraesCS6B01G448800 chr6A 86.607 112 11 3 3445 3553 611076757 611076647 1.820000e-23 121.0
14 TraesCS6B01G448800 chr6A 84.956 113 13 3 3588 3697 611076758 611076647 1.100000e-20 111.0
15 TraesCS6B01G448800 chr6A 100.000 28 0 0 2470 2497 223414105 223414078 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G448800 chr6B 708270367 708274102 3735 True 2448.0 6900 94.904667 1 3736 3 chr6B.!!$R1 3735
1 TraesCS6B01G448800 chr6D 464494225 464498028 3803 True 753.5 3245 90.786333 47 3480 6 chr6D.!!$R2 3433
2 TraesCS6B01G448800 chr6A 611076647 611080490 3843 True 796.0 2929 85.771600 47 3697 5 chr6A.!!$R2 3650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.035534 TTGCTGGCGTACCACATCAT 60.036 50.0 0.0 0.0 42.67 2.45 F
979 1091 0.173481 CTCGCTTCATCGAACTCCCA 59.827 55.0 0.0 0.0 38.08 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1632 1806 0.108377 ATCATGTCCTGCACGCGTAA 60.108 50.0 13.44 1.74 0.00 3.18 R
2738 2936 0.179145 GTGCAAGCAAGCTGGCTATG 60.179 55.0 18.09 17.08 45.07 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.772096 TCCCGCGTAATATACCCCT 57.228 52.632 4.92 0.00 0.00 4.79
19 20 2.014010 TCCCGCGTAATATACCCCTT 57.986 50.000 4.92 0.00 0.00 3.95
20 21 1.619827 TCCCGCGTAATATACCCCTTG 59.380 52.381 4.92 0.00 0.00 3.61
21 22 1.435577 CCGCGTAATATACCCCTTGC 58.564 55.000 4.92 0.00 0.00 4.01
22 23 1.001633 CCGCGTAATATACCCCTTGCT 59.998 52.381 4.92 0.00 0.00 3.91
23 24 2.066262 CGCGTAATATACCCCTTGCTG 58.934 52.381 0.00 0.00 0.00 4.41
24 25 2.423577 GCGTAATATACCCCTTGCTGG 58.576 52.381 0.00 0.00 0.00 4.85
25 26 2.423577 CGTAATATACCCCTTGCTGGC 58.576 52.381 0.00 0.00 0.00 4.85
26 27 2.423577 GTAATATACCCCTTGCTGGCG 58.576 52.381 0.00 0.00 0.00 5.69
27 28 0.843984 AATATACCCCTTGCTGGCGT 59.156 50.000 0.00 0.00 0.00 5.68
28 29 1.724545 ATATACCCCTTGCTGGCGTA 58.275 50.000 0.00 0.00 34.00 4.42
29 30 0.754472 TATACCCCTTGCTGGCGTAC 59.246 55.000 0.00 0.00 32.46 3.67
30 31 1.979619 ATACCCCTTGCTGGCGTACC 61.980 60.000 0.00 0.00 32.46 3.34
31 32 4.028490 CCCCTTGCTGGCGTACCA 62.028 66.667 0.00 0.00 46.51 3.25
32 33 2.746277 CCCTTGCTGGCGTACCAC 60.746 66.667 0.00 0.00 42.67 4.16
33 34 2.031919 CCTTGCTGGCGTACCACA 59.968 61.111 0.00 0.00 42.67 4.17
34 35 1.377202 CCTTGCTGGCGTACCACAT 60.377 57.895 0.00 0.00 42.67 3.21
35 36 1.369091 CCTTGCTGGCGTACCACATC 61.369 60.000 0.00 0.00 42.67 3.06
36 37 0.673333 CTTGCTGGCGTACCACATCA 60.673 55.000 0.00 0.00 42.67 3.07
37 38 0.035534 TTGCTGGCGTACCACATCAT 60.036 50.000 0.00 0.00 42.67 2.45
38 39 0.744057 TGCTGGCGTACCACATCATG 60.744 55.000 0.00 0.00 42.67 3.07
39 40 0.744414 GCTGGCGTACCACATCATGT 60.744 55.000 0.00 0.00 42.67 3.21
76 77 7.423844 AGTGAAGAATGAAAAAGGTTCCTTT 57.576 32.000 10.63 10.63 37.82 3.11
80 81 5.928976 AGAATGAAAAAGGTTCCTTTTGGG 58.071 37.500 24.33 0.00 43.04 4.12
81 82 5.428457 AGAATGAAAAAGGTTCCTTTTGGGT 59.572 36.000 24.33 12.94 43.04 4.51
82 83 5.708736 ATGAAAAAGGTTCCTTTTGGGTT 57.291 34.783 24.33 12.65 43.04 4.11
83 84 4.837972 TGAAAAAGGTTCCTTTTGGGTTG 58.162 39.130 24.33 0.00 43.04 3.77
84 85 4.287326 TGAAAAAGGTTCCTTTTGGGTTGT 59.713 37.500 24.33 11.75 43.04 3.32
85 86 3.904800 AAAGGTTCCTTTTGGGTTGTG 57.095 42.857 10.63 0.00 40.87 3.33
86 87 1.788229 AGGTTCCTTTTGGGTTGTGG 58.212 50.000 0.00 0.00 40.87 4.17
88 89 0.249280 GTTCCTTTTGGGTTGTGGCG 60.249 55.000 0.00 0.00 40.87 5.69
89 90 2.022240 TTCCTTTTGGGTTGTGGCGC 62.022 55.000 0.00 0.00 40.87 6.53
90 91 2.790791 CCTTTTGGGTTGTGGCGCA 61.791 57.895 10.83 0.00 35.46 6.09
91 92 1.591327 CTTTTGGGTTGTGGCGCAC 60.591 57.895 10.83 6.37 34.56 5.34
153 193 4.778143 GTCGTGGCAGCGGGGAAT 62.778 66.667 9.05 0.00 0.00 3.01
197 237 7.705700 ACCCCTACAGTTTAGTTAAATTCCAT 58.294 34.615 0.00 0.00 0.00 3.41
236 304 6.838382 AGTTAAATTTCGTAGGGCCATCTAT 58.162 36.000 6.18 0.00 0.00 1.98
249 317 6.098446 AGGGCCATCTATCTAGGGAATTTAA 58.902 40.000 6.18 0.00 0.00 1.52
270 338 2.884639 ACCAGCTAACAATGTGTGGAAC 59.115 45.455 10.20 0.00 37.35 3.62
322 390 2.662535 TGATGCCCATACCCAGAATG 57.337 50.000 0.00 0.00 0.00 2.67
325 393 1.148273 GCCCATACCCAGAATGCGA 59.852 57.895 0.00 0.00 31.97 5.10
368 440 0.818445 TTTGTAACCGAAAGCGCCCA 60.818 50.000 2.29 0.00 35.83 5.36
435 513 4.290459 AGGATCTGGAAATATGCATGGCTA 59.710 41.667 10.16 0.00 0.00 3.93
437 515 5.655532 GGATCTGGAAATATGCATGGCTAAT 59.344 40.000 10.16 0.00 0.00 1.73
463 541 5.816777 CAGGAATGAGAATCTGGACTTCTTC 59.183 44.000 0.00 0.00 33.18 2.87
565 653 8.865244 ATTCTAATTAAGGTACTACCAGGGAA 57.135 34.615 8.01 3.15 41.95 3.97
566 654 8.683776 TTCTAATTAAGGTACTACCAGGGAAA 57.316 34.615 8.01 0.00 41.95 3.13
567 655 8.315220 TCTAATTAAGGTACTACCAGGGAAAG 57.685 38.462 8.01 0.00 41.95 2.62
568 656 4.831674 TTAAGGTACTACCAGGGAAAGC 57.168 45.455 8.01 0.00 41.95 3.51
569 657 2.644060 AGGTACTACCAGGGAAAGCT 57.356 50.000 8.01 0.00 41.95 3.74
571 659 3.372897 AGGTACTACCAGGGAAAGCTAC 58.627 50.000 8.01 0.00 41.95 3.58
572 660 2.100418 GGTACTACCAGGGAAAGCTACG 59.900 54.545 0.00 0.00 38.42 3.51
573 661 1.192428 ACTACCAGGGAAAGCTACGG 58.808 55.000 0.00 0.00 0.00 4.02
575 663 1.409427 CTACCAGGGAAAGCTACGGAG 59.591 57.143 0.00 0.00 0.00 4.63
577 665 1.272872 ACCAGGGAAAGCTACGGAGTA 60.273 52.381 0.00 0.00 45.11 2.59
578 666 1.829222 CCAGGGAAAGCTACGGAGTAA 59.171 52.381 0.00 0.00 45.13 2.24
579 667 2.418334 CCAGGGAAAGCTACGGAGTAAC 60.418 54.545 0.00 0.00 45.13 2.50
580 668 2.232941 CAGGGAAAGCTACGGAGTAACA 59.767 50.000 0.00 0.00 45.13 2.41
581 669 2.901839 AGGGAAAGCTACGGAGTAACAA 59.098 45.455 0.00 0.00 45.13 2.83
582 670 3.518303 AGGGAAAGCTACGGAGTAACAAT 59.482 43.478 0.00 0.00 45.13 2.71
583 671 3.869832 GGGAAAGCTACGGAGTAACAATC 59.130 47.826 0.00 0.00 45.13 2.67
835 947 1.303317 GTGAGCCGGTCAAACCCAT 60.303 57.895 1.90 0.00 36.74 4.00
840 952 0.746923 GCCGGTCAAACCCATCTACC 60.747 60.000 1.90 0.00 33.75 3.18
841 953 0.909623 CCGGTCAAACCCATCTACCT 59.090 55.000 0.00 0.00 33.75 3.08
847 959 1.490910 CAAACCCATCTACCTCCCCTC 59.509 57.143 0.00 0.00 0.00 4.30
885 997 2.130426 GCTCCGCTCATCTCCTCCA 61.130 63.158 0.00 0.00 0.00 3.86
926 1038 0.459237 GAGACAGCAGACACCATCGG 60.459 60.000 0.00 0.00 0.00 4.18
960 1072 3.554692 CCGACGCAGCGACATTCC 61.555 66.667 24.65 2.10 0.00 3.01
974 1086 2.271800 ACATTCCTCGCTTCATCGAAC 58.728 47.619 0.00 0.00 38.08 3.95
979 1091 0.173481 CTCGCTTCATCGAACTCCCA 59.827 55.000 0.00 0.00 38.08 4.37
980 1092 0.606096 TCGCTTCATCGAACTCCCAA 59.394 50.000 0.00 0.00 35.31 4.12
1191 1365 2.998949 GGCAACCTCCCCGAGATT 59.001 61.111 0.00 0.00 0.00 2.40
1214 1388 1.447489 CCTCGCTGGCTGAGAACAG 60.447 63.158 13.03 0.94 45.91 3.16
1537 1711 0.856641 CACCAACCTCAACGTACGTG 59.143 55.000 23.57 15.75 0.00 4.49
1541 1715 0.319297 AACCTCAACGTACGTGCTCC 60.319 55.000 23.57 0.00 0.00 4.70
1545 1719 0.523072 TCAACGTACGTGCTCCTACC 59.477 55.000 23.57 0.00 0.00 3.18
1546 1720 0.457337 CAACGTACGTGCTCCTACCC 60.457 60.000 23.57 0.00 0.00 3.69
1549 1723 0.464373 CGTACGTGCTCCTACCCCTA 60.464 60.000 7.22 0.00 0.00 3.53
1550 1724 1.028130 GTACGTGCTCCTACCCCTAC 58.972 60.000 0.00 0.00 0.00 3.18
1552 1726 2.132352 CGTGCTCCTACCCCTACCC 61.132 68.421 0.00 0.00 0.00 3.69
1553 1727 1.313822 GTGCTCCTACCCCTACCCT 59.686 63.158 0.00 0.00 0.00 4.34
1554 1728 0.559699 GTGCTCCTACCCCTACCCTA 59.440 60.000 0.00 0.00 0.00 3.53
1555 1729 0.559699 TGCTCCTACCCCTACCCTAC 59.440 60.000 0.00 0.00 0.00 3.18
1556 1730 0.559699 GCTCCTACCCCTACCCTACA 59.440 60.000 0.00 0.00 0.00 2.74
1559 1733 3.817205 GCTCCTACCCCTACCCTACATAC 60.817 56.522 0.00 0.00 0.00 2.39
1560 1734 3.661654 CTCCTACCCCTACCCTACATACT 59.338 52.174 0.00 0.00 0.00 2.12
1561 1735 3.659686 TCCTACCCCTACCCTACATACTC 59.340 52.174 0.00 0.00 0.00 2.59
1562 1736 2.671896 ACCCCTACCCTACATACTCG 57.328 55.000 0.00 0.00 0.00 4.18
1563 1737 2.138542 ACCCCTACCCTACATACTCGA 58.861 52.381 0.00 0.00 0.00 4.04
1564 1738 2.107901 ACCCCTACCCTACATACTCGAG 59.892 54.545 11.84 11.84 0.00 4.04
1565 1739 2.161030 CCCTACCCTACATACTCGAGC 58.839 57.143 13.61 0.00 0.00 5.03
1566 1740 2.161030 CCTACCCTACATACTCGAGCC 58.839 57.143 13.61 0.00 0.00 4.70
1569 1743 0.315568 CCCTACATACTCGAGCCTGC 59.684 60.000 13.61 0.00 0.00 4.85
1571 1745 1.683917 CCTACATACTCGAGCCTGCTT 59.316 52.381 13.61 0.00 0.00 3.91
1572 1746 2.101582 CCTACATACTCGAGCCTGCTTT 59.898 50.000 13.61 0.00 0.00 3.51
1574 1748 1.550524 ACATACTCGAGCCTGCTTTCA 59.449 47.619 13.61 0.00 0.00 2.69
1575 1749 2.028112 ACATACTCGAGCCTGCTTTCAA 60.028 45.455 13.61 0.00 0.00 2.69
1576 1750 2.831685 TACTCGAGCCTGCTTTCAAA 57.168 45.000 13.61 0.00 0.00 2.69
1577 1751 2.191128 ACTCGAGCCTGCTTTCAAAT 57.809 45.000 13.61 0.00 0.00 2.32
1578 1752 2.079925 ACTCGAGCCTGCTTTCAAATC 58.920 47.619 13.61 0.00 0.00 2.17
1579 1753 1.399791 CTCGAGCCTGCTTTCAAATCC 59.600 52.381 0.00 0.00 0.00 3.01
1580 1754 1.167851 CGAGCCTGCTTTCAAATCCA 58.832 50.000 0.00 0.00 0.00 3.41
1581 1755 1.747355 CGAGCCTGCTTTCAAATCCAT 59.253 47.619 0.00 0.00 0.00 3.41
1582 1756 2.479049 CGAGCCTGCTTTCAAATCCATG 60.479 50.000 0.00 0.00 0.00 3.66
1583 1757 1.206371 AGCCTGCTTTCAAATCCATGC 59.794 47.619 0.00 0.00 0.00 4.06
1584 1758 1.066716 GCCTGCTTTCAAATCCATGCA 60.067 47.619 0.00 0.00 0.00 3.96
1585 1759 2.888594 CCTGCTTTCAAATCCATGCAG 58.111 47.619 0.00 0.00 44.97 4.41
1587 1761 3.581024 TGCTTTCAAATCCATGCAGAC 57.419 42.857 0.00 0.00 0.00 3.51
1588 1762 2.095110 TGCTTTCAAATCCATGCAGACG 60.095 45.455 0.00 0.00 0.00 4.18
1589 1763 2.095059 GCTTTCAAATCCATGCAGACGT 60.095 45.455 0.00 0.00 0.00 4.34
1590 1764 3.126858 GCTTTCAAATCCATGCAGACGTA 59.873 43.478 0.00 0.00 0.00 3.57
1591 1765 4.651994 CTTTCAAATCCATGCAGACGTAC 58.348 43.478 0.00 0.00 0.00 3.67
1592 1766 3.610040 TCAAATCCATGCAGACGTACT 57.390 42.857 0.00 0.00 0.00 2.73
1593 1767 3.521560 TCAAATCCATGCAGACGTACTC 58.478 45.455 0.00 0.00 0.00 2.59
1594 1768 3.195610 TCAAATCCATGCAGACGTACTCT 59.804 43.478 0.00 0.00 0.00 3.24
1595 1769 4.401202 TCAAATCCATGCAGACGTACTCTA 59.599 41.667 0.00 0.00 0.00 2.43
1596 1770 3.992260 ATCCATGCAGACGTACTCTAC 57.008 47.619 0.00 0.00 0.00 2.59
1597 1771 2.718563 TCCATGCAGACGTACTCTACA 58.281 47.619 0.00 0.00 0.00 2.74
1598 1772 3.288092 TCCATGCAGACGTACTCTACAT 58.712 45.455 0.00 0.00 33.73 2.29
1599 1773 4.457466 TCCATGCAGACGTACTCTACATA 58.543 43.478 0.00 0.00 31.93 2.29
1600 1774 5.070685 TCCATGCAGACGTACTCTACATAT 58.929 41.667 0.00 0.00 31.93 1.78
1601 1775 5.181433 TCCATGCAGACGTACTCTACATATC 59.819 44.000 0.00 0.00 31.93 1.63
1625 1799 2.931512 CATGCATGCACTGACATCAA 57.068 45.000 25.37 0.00 0.00 2.57
1627 1801 1.900245 TGCATGCACTGACATCAACT 58.100 45.000 18.46 0.00 0.00 3.16
1628 1802 1.538075 TGCATGCACTGACATCAACTG 59.462 47.619 18.46 0.00 0.00 3.16
1629 1803 1.538512 GCATGCACTGACATCAACTGT 59.461 47.619 14.21 0.00 42.15 3.55
1630 1804 2.743664 GCATGCACTGACATCAACTGTA 59.256 45.455 14.21 0.00 38.54 2.74
1631 1805 3.425359 GCATGCACTGACATCAACTGTAC 60.425 47.826 14.21 0.00 38.54 2.90
1632 1806 3.751479 TGCACTGACATCAACTGTACT 57.249 42.857 0.00 0.00 38.54 2.73
1633 1807 4.071961 TGCACTGACATCAACTGTACTT 57.928 40.909 0.00 0.00 38.54 2.24
1634 1808 5.208463 TGCACTGACATCAACTGTACTTA 57.792 39.130 0.00 0.00 38.54 2.24
1635 1809 4.988540 TGCACTGACATCAACTGTACTTAC 59.011 41.667 0.00 0.00 38.54 2.34
1636 1810 4.090066 GCACTGACATCAACTGTACTTACG 59.910 45.833 0.00 0.00 38.54 3.18
1637 1811 4.090066 CACTGACATCAACTGTACTTACGC 59.910 45.833 0.00 0.00 38.54 4.42
1749 1947 3.299977 CGGTGGTGGACGTGGAGA 61.300 66.667 0.00 0.00 0.00 3.71
1919 2117 2.125912 CTCCACCTCCGCAAGACG 60.126 66.667 0.00 0.00 43.15 4.18
2738 2936 2.223433 GCAGCAGCACACCAAATAGATC 60.223 50.000 0.00 0.00 41.58 2.75
2739 2937 3.011818 CAGCAGCACACCAAATAGATCA 58.988 45.455 0.00 0.00 0.00 2.92
2740 2938 3.630769 CAGCAGCACACCAAATAGATCAT 59.369 43.478 0.00 0.00 0.00 2.45
2741 2939 4.818005 CAGCAGCACACCAAATAGATCATA 59.182 41.667 0.00 0.00 0.00 2.15
2749 2947 5.068636 CACCAAATAGATCATAGCCAGCTT 58.931 41.667 0.00 0.00 0.00 3.74
2758 2956 0.323178 ATAGCCAGCTTGCTTGCACT 60.323 50.000 18.52 4.07 42.75 4.40
2759 2957 0.324614 TAGCCAGCTTGCTTGCACTA 59.675 50.000 18.52 0.00 42.75 2.74
2760 2958 1.211190 GCCAGCTTGCTTGCACTAC 59.789 57.895 12.82 0.00 34.99 2.73
2762 2960 0.239347 CCAGCTTGCTTGCACTACAC 59.761 55.000 0.00 0.00 34.99 2.90
2763 2961 0.110509 CAGCTTGCTTGCACTACACG 60.111 55.000 0.00 0.00 34.99 4.49
2765 2963 0.110644 GCTTGCTTGCACTACACGAC 60.111 55.000 0.00 0.00 0.00 4.34
2766 2964 0.512952 CTTGCTTGCACTACACGACC 59.487 55.000 0.00 0.00 0.00 4.79
2768 2966 0.963225 TGCTTGCACTACACGACCTA 59.037 50.000 0.00 0.00 0.00 3.08
2769 2967 1.067846 TGCTTGCACTACACGACCTAG 60.068 52.381 0.00 0.00 0.00 3.02
2843 3046 5.003160 AGCAACATATGTAAGTGCTCAACA 58.997 37.500 22.22 0.00 0.00 3.33
3062 3277 0.181114 GGGAGCATGCATGAGGTGTA 59.819 55.000 30.64 0.00 0.00 2.90
3232 3479 1.349627 CGCGCATGTAAGCTTGGAG 59.650 57.895 9.86 0.00 0.00 3.86
3234 3481 1.723870 CGCATGTAAGCTTGGAGGC 59.276 57.895 9.86 7.65 0.00 4.70
3274 3525 2.629617 TCTTTTTCTAGACCGTTCCCGT 59.370 45.455 0.00 0.00 0.00 5.28
3275 3526 2.443887 TTTTCTAGACCGTTCCCGTG 57.556 50.000 0.00 0.00 0.00 4.94
3305 3556 6.265577 GTTGATCGGCAGCATTAATAAGTTT 58.734 36.000 0.00 0.00 0.00 2.66
3306 3557 6.449635 TGATCGGCAGCATTAATAAGTTTT 57.550 33.333 0.00 0.00 0.00 2.43
3326 3577 2.037871 TTTTTGCGGGTGAGGAAGC 58.962 52.632 0.00 0.00 0.00 3.86
3328 3579 0.539438 TTTTGCGGGTGAGGAAGCAT 60.539 50.000 0.00 0.00 39.50 3.79
3329 3580 0.539438 TTTGCGGGTGAGGAAGCATT 60.539 50.000 0.00 0.00 39.50 3.56
3330 3581 0.326595 TTGCGGGTGAGGAAGCATTA 59.673 50.000 0.00 0.00 39.50 1.90
3331 3582 0.326595 TGCGGGTGAGGAAGCATTAA 59.673 50.000 0.00 0.00 34.39 1.40
3363 3866 6.332630 CCTGAGTAAATTGATTTTGCGGATT 58.667 36.000 0.00 0.00 35.33 3.01
3382 3885 5.926542 CGGATTATCGGCTCTAAATCTTTCA 59.073 40.000 0.00 0.00 0.00 2.69
3383 3886 6.423905 CGGATTATCGGCTCTAAATCTTTCAA 59.576 38.462 0.00 0.00 0.00 2.69
3384 3887 7.118390 CGGATTATCGGCTCTAAATCTTTCAAT 59.882 37.037 0.00 0.00 0.00 2.57
3385 3888 8.787852 GGATTATCGGCTCTAAATCTTTCAATT 58.212 33.333 0.00 0.00 0.00 2.32
3386 3889 9.818796 GATTATCGGCTCTAAATCTTTCAATTC 57.181 33.333 0.00 0.00 0.00 2.17
3387 3890 8.964476 TTATCGGCTCTAAATCTTTCAATTCT 57.036 30.769 0.00 0.00 0.00 2.40
3388 3891 7.872113 ATCGGCTCTAAATCTTTCAATTCTT 57.128 32.000 0.00 0.00 0.00 2.52
3389 3892 7.687941 TCGGCTCTAAATCTTTCAATTCTTT 57.312 32.000 0.00 0.00 0.00 2.52
3447 4252 4.103103 GCTGCGCCTCCGTTTTCC 62.103 66.667 4.18 0.00 36.67 3.13
3448 4253 2.358737 CTGCGCCTCCGTTTTCCT 60.359 61.111 4.18 0.00 36.67 3.36
3450 4255 2.047179 GCGCCTCCGTTTTCCTCT 60.047 61.111 0.00 0.00 36.67 3.69
3454 4259 0.325272 GCCTCCGTTTTCCTCTTCCT 59.675 55.000 0.00 0.00 0.00 3.36
3455 4260 1.676314 GCCTCCGTTTTCCTCTTCCTC 60.676 57.143 0.00 0.00 0.00 3.71
3456 4261 1.066071 CCTCCGTTTTCCTCTTCCTCC 60.066 57.143 0.00 0.00 0.00 4.30
3457 4262 0.606604 TCCGTTTTCCTCTTCCTCCG 59.393 55.000 0.00 0.00 0.00 4.63
3458 4263 0.606604 CCGTTTTCCTCTTCCTCCGA 59.393 55.000 0.00 0.00 0.00 4.55
3459 4264 1.207329 CCGTTTTCCTCTTCCTCCGAT 59.793 52.381 0.00 0.00 0.00 4.18
3460 4265 2.541556 CGTTTTCCTCTTCCTCCGATC 58.458 52.381 0.00 0.00 0.00 3.69
3461 4266 2.738964 CGTTTTCCTCTTCCTCCGATCC 60.739 54.545 0.00 0.00 0.00 3.36
3462 4267 1.112113 TTTCCTCTTCCTCCGATCCG 58.888 55.000 0.00 0.00 0.00 4.18
3463 4268 1.392710 TTCCTCTTCCTCCGATCCGC 61.393 60.000 0.00 0.00 0.00 5.54
3464 4269 2.731374 CTCTTCCTCCGATCCGCC 59.269 66.667 0.00 0.00 0.00 6.13
3465 4270 3.200887 CTCTTCCTCCGATCCGCCG 62.201 68.421 0.00 0.00 0.00 6.46
3466 4271 3.217017 CTTCCTCCGATCCGCCGA 61.217 66.667 0.00 0.00 0.00 5.54
3467 4272 2.520982 TTCCTCCGATCCGCCGAT 60.521 61.111 0.00 0.00 0.00 4.18
3468 4273 2.479412 CTTCCTCCGATCCGCCGATC 62.479 65.000 5.09 5.09 41.43 3.69
3469 4274 2.978298 TTCCTCCGATCCGCCGATCT 62.978 60.000 12.31 0.00 42.49 2.75
3470 4275 1.674651 CCTCCGATCCGCCGATCTA 60.675 63.158 12.31 1.38 42.49 1.98
3471 4276 1.649390 CCTCCGATCCGCCGATCTAG 61.649 65.000 12.31 9.39 42.49 2.43
3472 4277 2.179517 CCGATCCGCCGATCTAGC 59.820 66.667 12.31 0.00 42.49 3.42
3481 4286 2.028190 CGATCTAGCGGGGCACTG 59.972 66.667 0.00 0.00 0.00 3.66
3492 4297 2.045536 GGCACTGCCCTCTCTTGG 60.046 66.667 9.13 0.00 44.06 3.61
3498 4303 3.706373 GCCCTCTCTTGGCCGACA 61.706 66.667 0.00 0.00 43.33 4.35
3499 4304 2.266055 CCCTCTCTTGGCCGACAC 59.734 66.667 0.00 0.00 0.00 3.67
3500 4305 2.266055 CCTCTCTTGGCCGACACC 59.734 66.667 0.00 0.00 0.00 4.16
3501 4306 2.266055 CTCTCTTGGCCGACACCC 59.734 66.667 0.00 0.00 0.00 4.61
3502 4307 2.525629 TCTCTTGGCCGACACCCA 60.526 61.111 0.00 0.00 0.00 4.51
3503 4308 2.358737 CTCTTGGCCGACACCCAC 60.359 66.667 0.00 0.00 30.65 4.61
3504 4309 3.901797 CTCTTGGCCGACACCCACC 62.902 68.421 0.00 0.00 30.65 4.61
3511 4316 4.697756 CGACACCCACCGCCATGT 62.698 66.667 0.00 0.00 0.00 3.21
3512 4317 2.282180 GACACCCACCGCCATGTT 60.282 61.111 0.00 0.00 0.00 2.71
3513 4318 2.597217 ACACCCACCGCCATGTTG 60.597 61.111 0.00 0.00 0.00 3.33
3514 4319 4.054825 CACCCACCGCCATGTTGC 62.055 66.667 0.00 0.00 0.00 4.17
3515 4320 4.284550 ACCCACCGCCATGTTGCT 62.285 61.111 0.00 0.00 0.00 3.91
3516 4321 2.045438 CCCACCGCCATGTTGCTA 60.045 61.111 0.00 0.00 0.00 3.49
3517 4322 2.406616 CCCACCGCCATGTTGCTAC 61.407 63.158 0.00 0.00 0.00 3.58
3518 4323 2.406616 CCACCGCCATGTTGCTACC 61.407 63.158 0.00 0.00 0.00 3.18
3519 4324 2.435938 ACCGCCATGTTGCTACCG 60.436 61.111 0.00 0.00 0.00 4.02
3520 4325 3.876198 CCGCCATGTTGCTACCGC 61.876 66.667 0.00 0.00 0.00 5.68
3521 4326 3.876198 CGCCATGTTGCTACCGCC 61.876 66.667 0.00 0.00 34.43 6.13
3522 4327 3.876198 GCCATGTTGCTACCGCCG 61.876 66.667 0.00 0.00 34.43 6.46
3523 4328 2.125310 CCATGTTGCTACCGCCGA 60.125 61.111 0.00 0.00 34.43 5.54
3524 4329 2.461110 CCATGTTGCTACCGCCGAC 61.461 63.158 0.00 0.00 34.43 4.79
3525 4330 2.125269 ATGTTGCTACCGCCGACC 60.125 61.111 0.00 0.00 34.43 4.79
3526 4331 2.949909 ATGTTGCTACCGCCGACCA 61.950 57.895 0.00 0.00 34.43 4.02
3527 4332 2.125269 GTTGCTACCGCCGACCAT 60.125 61.111 0.00 0.00 34.43 3.55
3528 4333 2.171725 GTTGCTACCGCCGACCATC 61.172 63.158 0.00 0.00 34.43 3.51
3529 4334 3.379865 TTGCTACCGCCGACCATCC 62.380 63.158 0.00 0.00 34.43 3.51
3530 4335 4.603946 GCTACCGCCGACCATCCC 62.604 72.222 0.00 0.00 0.00 3.85
3531 4336 2.838225 CTACCGCCGACCATCCCT 60.838 66.667 0.00 0.00 0.00 4.20
3532 4337 2.836360 TACCGCCGACCATCCCTC 60.836 66.667 0.00 0.00 0.00 4.30
3533 4338 3.369410 TACCGCCGACCATCCCTCT 62.369 63.158 0.00 0.00 0.00 3.69
3534 4339 1.998444 TACCGCCGACCATCCCTCTA 61.998 60.000 0.00 0.00 0.00 2.43
3535 4340 1.908793 CCGCCGACCATCCCTCTAT 60.909 63.158 0.00 0.00 0.00 1.98
3536 4341 1.587054 CGCCGACCATCCCTCTATC 59.413 63.158 0.00 0.00 0.00 2.08
3537 4342 0.896019 CGCCGACCATCCCTCTATCT 60.896 60.000 0.00 0.00 0.00 1.98
3538 4343 0.605589 GCCGACCATCCCTCTATCTG 59.394 60.000 0.00 0.00 0.00 2.90
3539 4344 1.261480 CCGACCATCCCTCTATCTGG 58.739 60.000 0.00 0.00 34.84 3.86
3540 4345 0.605589 CGACCATCCCTCTATCTGGC 59.394 60.000 0.00 0.00 31.72 4.85
3541 4346 0.605589 GACCATCCCTCTATCTGGCG 59.394 60.000 0.00 0.00 31.72 5.69
3542 4347 0.105453 ACCATCCCTCTATCTGGCGT 60.105 55.000 0.00 0.00 31.72 5.68
3543 4348 1.051812 CCATCCCTCTATCTGGCGTT 58.948 55.000 0.00 0.00 0.00 4.84
3544 4349 1.001406 CCATCCCTCTATCTGGCGTTC 59.999 57.143 0.00 0.00 0.00 3.95
3545 4350 0.962489 ATCCCTCTATCTGGCGTTCG 59.038 55.000 0.00 0.00 0.00 3.95
3546 4351 1.300233 CCCTCTATCTGGCGTTCGC 60.300 63.158 8.75 8.75 0.00 4.70
3563 4368 4.695231 CCGCGGTGTCGTCGTCTT 62.695 66.667 19.50 0.00 38.89 3.01
3564 4369 3.164011 CGCGGTGTCGTCGTCTTC 61.164 66.667 0.00 0.00 38.89 2.87
3565 4370 2.254651 GCGGTGTCGTCGTCTTCT 59.745 61.111 0.00 0.00 38.89 2.85
3566 4371 2.081212 GCGGTGTCGTCGTCTTCTG 61.081 63.158 0.00 0.00 38.89 3.02
3567 4372 1.281960 CGGTGTCGTCGTCTTCTGT 59.718 57.895 0.00 0.00 0.00 3.41
3568 4373 0.317603 CGGTGTCGTCGTCTTCTGTT 60.318 55.000 0.00 0.00 0.00 3.16
3569 4374 1.849097 GGTGTCGTCGTCTTCTGTTT 58.151 50.000 0.00 0.00 0.00 2.83
3570 4375 2.199236 GGTGTCGTCGTCTTCTGTTTT 58.801 47.619 0.00 0.00 0.00 2.43
3571 4376 3.374745 GGTGTCGTCGTCTTCTGTTTTA 58.625 45.455 0.00 0.00 0.00 1.52
3572 4377 3.181178 GGTGTCGTCGTCTTCTGTTTTAC 59.819 47.826 0.00 0.00 0.00 2.01
3573 4378 3.792956 GTGTCGTCGTCTTCTGTTTTACA 59.207 43.478 0.00 0.00 0.00 2.41
3575 4380 4.040376 GTCGTCGTCTTCTGTTTTACAGT 58.960 43.478 6.71 0.00 46.03 3.55
3576 4381 4.146100 GTCGTCGTCTTCTGTTTTACAGTC 59.854 45.833 6.71 0.00 46.03 3.51
3577 4382 4.039703 CGTCGTCTTCTGTTTTACAGTCA 58.960 43.478 6.71 0.00 46.03 3.41
3578 4383 4.680110 CGTCGTCTTCTGTTTTACAGTCAT 59.320 41.667 6.71 0.00 46.03 3.06
3579 4384 5.387444 CGTCGTCTTCTGTTTTACAGTCATG 60.387 44.000 6.71 0.00 46.03 3.07
3580 4385 4.447724 TCGTCTTCTGTTTTACAGTCATGC 59.552 41.667 6.71 0.00 46.03 4.06
3581 4386 4.377431 CGTCTTCTGTTTTACAGTCATGCC 60.377 45.833 6.71 0.00 46.03 4.40
3582 4387 4.757149 GTCTTCTGTTTTACAGTCATGCCT 59.243 41.667 6.71 0.00 46.03 4.75
3583 4388 4.997395 TCTTCTGTTTTACAGTCATGCCTC 59.003 41.667 6.71 0.00 46.03 4.70
3600 4415 1.341581 CCTCCGTCTTCCTCTTCCTCT 60.342 57.143 0.00 0.00 0.00 3.69
3636 4451 4.785453 GGCACCGCCCTCTCTTGG 62.785 72.222 0.00 0.00 44.06 3.61
3665 4480 2.828549 CGCCATGTTGCTACCCCC 60.829 66.667 0.00 0.00 0.00 5.40
3666 4481 2.828549 GCCATGTTGCTACCCCCG 60.829 66.667 0.00 0.00 0.00 5.73
3667 4482 2.994699 CCATGTTGCTACCCCCGA 59.005 61.111 0.00 0.00 0.00 5.14
3669 4484 1.451387 CATGTTGCTACCCCCGACC 60.451 63.158 0.00 0.00 0.00 4.79
3670 4485 1.921346 ATGTTGCTACCCCCGACCA 60.921 57.895 0.00 0.00 0.00 4.02
3671 4486 1.279025 ATGTTGCTACCCCCGACCAT 61.279 55.000 0.00 0.00 0.00 3.55
3674 4489 3.557290 GCTACCCCCGACCATCCC 61.557 72.222 0.00 0.00 0.00 3.85
3677 4492 2.313749 CTACCCCCGACCATCCCTCT 62.314 65.000 0.00 0.00 0.00 3.69
3678 4493 1.000590 TACCCCCGACCATCCCTCTA 61.001 60.000 0.00 0.00 0.00 2.43
3689 4506 0.962489 ATCCCTCTATCTGGCGTTCG 59.038 55.000 0.00 0.00 0.00 3.95
3711 4528 3.112709 GGTGTCGCCGTCTTCTGC 61.113 66.667 0.00 0.00 0.00 4.26
3712 4529 2.049063 GTGTCGCCGTCTTCTGCT 60.049 61.111 0.00 0.00 0.00 4.24
3713 4530 1.664965 GTGTCGCCGTCTTCTGCTT 60.665 57.895 0.00 0.00 0.00 3.91
3714 4531 1.069090 TGTCGCCGTCTTCTGCTTT 59.931 52.632 0.00 0.00 0.00 3.51
3715 4532 0.315886 TGTCGCCGTCTTCTGCTTTA 59.684 50.000 0.00 0.00 0.00 1.85
3716 4533 0.992802 GTCGCCGTCTTCTGCTTTAG 59.007 55.000 0.00 0.00 0.00 1.85
3717 4534 0.108804 TCGCCGTCTTCTGCTTTAGG 60.109 55.000 0.00 0.00 0.00 2.69
3718 4535 1.084370 CGCCGTCTTCTGCTTTAGGG 61.084 60.000 0.00 0.00 0.00 3.53
3719 4536 0.036294 GCCGTCTTCTGCTTTAGGGT 60.036 55.000 0.00 0.00 0.00 4.34
3720 4537 1.610886 GCCGTCTTCTGCTTTAGGGTT 60.611 52.381 0.00 0.00 0.00 4.11
3721 4538 2.076863 CCGTCTTCTGCTTTAGGGTTG 58.923 52.381 0.00 0.00 0.00 3.77
3722 4539 2.550208 CCGTCTTCTGCTTTAGGGTTGT 60.550 50.000 0.00 0.00 0.00 3.32
3723 4540 2.480419 CGTCTTCTGCTTTAGGGTTGTG 59.520 50.000 0.00 0.00 0.00 3.33
3724 4541 2.226674 GTCTTCTGCTTTAGGGTTGTGC 59.773 50.000 0.00 0.00 0.00 4.57
3725 4542 1.541588 CTTCTGCTTTAGGGTTGTGCC 59.458 52.381 0.00 0.00 0.00 5.01
3726 4543 0.771127 TCTGCTTTAGGGTTGTGCCT 59.229 50.000 0.00 0.00 37.43 4.75
3727 4544 1.168714 CTGCTTTAGGGTTGTGCCTC 58.831 55.000 0.00 0.00 37.43 4.70
3728 4545 0.251165 TGCTTTAGGGTTGTGCCTCC 60.251 55.000 0.00 0.00 37.43 4.30
3729 4546 0.251165 GCTTTAGGGTTGTGCCTCCA 60.251 55.000 0.00 0.00 37.43 3.86
3730 4547 1.534729 CTTTAGGGTTGTGCCTCCAC 58.465 55.000 0.00 0.00 42.40 4.02
3731 4548 1.073923 CTTTAGGGTTGTGCCTCCACT 59.926 52.381 0.00 0.00 42.54 4.00
3732 4549 1.145571 TTAGGGTTGTGCCTCCACTT 58.854 50.000 0.00 0.00 42.54 3.16
3733 4550 0.690762 TAGGGTTGTGCCTCCACTTC 59.309 55.000 0.00 0.00 42.54 3.01
3734 4551 1.603739 GGGTTGTGCCTCCACTTCC 60.604 63.158 0.00 0.00 42.54 3.46
3735 4552 1.966451 GGTTGTGCCTCCACTTCCG 60.966 63.158 0.00 0.00 42.54 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.619827 CAAGGGGTATATTACGCGGGA 59.380 52.381 12.47 0.00 41.97 5.14
1 2 1.942586 GCAAGGGGTATATTACGCGGG 60.943 57.143 12.47 0.00 41.97 6.13
2 3 1.001633 AGCAAGGGGTATATTACGCGG 59.998 52.381 12.47 0.00 41.97 6.46
3 4 2.066262 CAGCAAGGGGTATATTACGCG 58.934 52.381 3.53 3.53 41.97 6.01
4 5 2.423577 CCAGCAAGGGGTATATTACGC 58.576 52.381 0.00 0.00 40.51 4.42
5 6 2.423577 GCCAGCAAGGGGTATATTACG 58.576 52.381 0.00 0.00 38.09 3.18
6 7 2.423577 CGCCAGCAAGGGGTATATTAC 58.576 52.381 4.38 0.00 44.93 1.89
7 8 2.851263 CGCCAGCAAGGGGTATATTA 57.149 50.000 4.38 0.00 44.93 0.98
8 9 3.725754 CGCCAGCAAGGGGTATATT 57.274 52.632 4.38 0.00 44.93 1.28
22 23 3.151461 CACATGATGTGGTACGCCA 57.849 52.632 17.51 0.00 44.27 5.69
31 32 8.712228 TCACTAGATAGAATACCACATGATGT 57.288 34.615 0.00 0.00 0.00 3.06
32 33 9.636879 CTTCACTAGATAGAATACCACATGATG 57.363 37.037 0.00 0.00 0.00 3.07
33 34 9.593565 TCTTCACTAGATAGAATACCACATGAT 57.406 33.333 0.00 0.00 0.00 2.45
34 35 8.996651 TCTTCACTAGATAGAATACCACATGA 57.003 34.615 0.00 0.00 0.00 3.07
37 38 9.421399 TCATTCTTCACTAGATAGAATACCACA 57.579 33.333 14.07 1.25 36.70 4.17
76 77 4.822628 TGGTGCGCCACAACCCAA 62.823 61.111 16.89 0.00 40.46 4.12
91 92 3.093717 GTCACCGTATAGACCATGTGG 57.906 52.381 0.00 0.00 42.17 4.17
213 257 6.935208 AGATAGATGGCCCTACGAAATTTAAC 59.065 38.462 0.00 0.00 0.00 2.01
214 258 7.074653 AGATAGATGGCCCTACGAAATTTAA 57.925 36.000 0.00 0.00 0.00 1.52
216 260 5.568620 AGATAGATGGCCCTACGAAATTT 57.431 39.130 0.00 0.00 0.00 1.82
219 263 4.087182 CCTAGATAGATGGCCCTACGAAA 58.913 47.826 0.00 0.00 0.00 3.46
236 304 6.630203 TGTTAGCTGGTTAAATTCCCTAGA 57.370 37.500 0.00 0.00 0.00 2.43
249 317 2.884639 GTTCCACACATTGTTAGCTGGT 59.115 45.455 0.00 0.00 0.00 4.00
322 390 0.523335 CCTTTGCTTATGCCGTTCGC 60.523 55.000 0.00 0.00 38.71 4.70
325 393 0.897863 TGCCCTTTGCTTATGCCGTT 60.898 50.000 0.00 0.00 42.00 4.44
368 440 6.090358 CGTGTTCAAAGATTTATACTCACCGT 59.910 38.462 0.00 0.00 0.00 4.83
435 513 4.079901 AGTCCAGATTCTCATTCCTGCATT 60.080 41.667 0.00 0.00 0.00 3.56
437 515 2.842496 AGTCCAGATTCTCATTCCTGCA 59.158 45.455 0.00 0.00 0.00 4.41
440 518 5.104569 GGAAGAAGTCCAGATTCTCATTCCT 60.105 44.000 0.00 0.00 46.97 3.36
539 617 9.956558 TTCCCTGGTAGTACCTTAATTAGAATA 57.043 33.333 20.07 0.00 39.58 1.75
555 643 1.409427 CTCCGTAGCTTTCCCTGGTAG 59.591 57.143 0.00 0.00 0.00 3.18
556 644 1.272872 ACTCCGTAGCTTTCCCTGGTA 60.273 52.381 0.00 0.00 0.00 3.25
558 646 1.481871 TACTCCGTAGCTTTCCCTGG 58.518 55.000 0.00 0.00 0.00 4.45
559 647 2.232941 TGTTACTCCGTAGCTTTCCCTG 59.767 50.000 0.00 0.00 0.00 4.45
560 648 2.532843 TGTTACTCCGTAGCTTTCCCT 58.467 47.619 0.00 0.00 0.00 4.20
561 649 3.323751 TTGTTACTCCGTAGCTTTCCC 57.676 47.619 0.00 0.00 0.00 3.97
562 650 4.756502 AGATTGTTACTCCGTAGCTTTCC 58.243 43.478 0.00 0.00 0.00 3.13
563 651 5.408356 TGAGATTGTTACTCCGTAGCTTTC 58.592 41.667 0.00 0.00 33.95 2.62
565 653 5.401531 TTGAGATTGTTACTCCGTAGCTT 57.598 39.130 0.00 0.00 33.95 3.74
566 654 5.593010 GATTGAGATTGTTACTCCGTAGCT 58.407 41.667 0.00 0.00 33.95 3.32
567 655 4.441415 CGATTGAGATTGTTACTCCGTAGC 59.559 45.833 0.00 0.00 33.95 3.58
568 656 4.976731 CCGATTGAGATTGTTACTCCGTAG 59.023 45.833 0.00 0.00 33.95 3.51
569 657 4.641541 TCCGATTGAGATTGTTACTCCGTA 59.358 41.667 0.00 0.00 33.95 4.02
571 659 4.041740 TCCGATTGAGATTGTTACTCCG 57.958 45.455 0.00 0.00 33.95 4.63
572 660 6.927294 ATTTCCGATTGAGATTGTTACTCC 57.073 37.500 0.00 0.00 33.95 3.85
604 692 0.094730 CGAACGATTTTCAGACGGGC 59.905 55.000 0.00 0.00 0.00 6.13
607 695 3.562869 GGCGAACGATTTTCAGACG 57.437 52.632 0.00 0.00 0.00 4.18
835 947 2.043248 GCGTGGAGGGGAGGTAGA 60.043 66.667 0.00 0.00 0.00 2.59
847 959 4.838152 CCATGGTCGGAGGCGTGG 62.838 72.222 2.57 0.00 32.69 4.94
871 983 1.974265 TAGAGTGGAGGAGATGAGCG 58.026 55.000 0.00 0.00 0.00 5.03
885 997 2.351157 GCGCGTCGGGTTTATATAGAGT 60.351 50.000 8.43 0.00 0.00 3.24
926 1038 1.751351 TCGGTGTGATGAGAGATGGTC 59.249 52.381 0.00 0.00 0.00 4.02
960 1072 0.173481 TGGGAGTTCGATGAAGCGAG 59.827 55.000 0.00 0.00 41.79 5.03
970 1082 2.484889 GGCTAGCTAATTGGGAGTTCG 58.515 52.381 15.72 0.00 0.00 3.95
974 1086 3.971245 CTAGGGCTAGCTAATTGGGAG 57.029 52.381 15.72 0.00 0.00 4.30
1266 1440 2.884207 CGCGCGAAGTAGGGGAAC 60.884 66.667 28.94 0.00 0.00 3.62
1293 1467 3.573489 GAACACCTTGCCGAACGCG 62.573 63.158 3.53 3.53 42.08 6.01
1537 1711 0.559699 TGTAGGGTAGGGGTAGGAGC 59.440 60.000 0.00 0.00 0.00 4.70
1541 1715 3.328931 TCGAGTATGTAGGGTAGGGGTAG 59.671 52.174 0.00 0.00 0.00 3.18
1545 1719 2.161030 GCTCGAGTATGTAGGGTAGGG 58.839 57.143 15.13 0.00 0.00 3.53
1546 1720 2.161030 GGCTCGAGTATGTAGGGTAGG 58.839 57.143 15.13 0.00 0.00 3.18
1549 1723 1.693627 CAGGCTCGAGTATGTAGGGT 58.306 55.000 15.13 0.00 0.00 4.34
1550 1724 0.315568 GCAGGCTCGAGTATGTAGGG 59.684 60.000 15.13 0.00 0.00 3.53
1552 1726 3.181486 TGAAAGCAGGCTCGAGTATGTAG 60.181 47.826 15.13 0.00 0.00 2.74
1553 1727 2.758423 TGAAAGCAGGCTCGAGTATGTA 59.242 45.455 15.13 0.00 0.00 2.29
1554 1728 1.550524 TGAAAGCAGGCTCGAGTATGT 59.449 47.619 15.13 2.00 0.00 2.29
1555 1729 2.299993 TGAAAGCAGGCTCGAGTATG 57.700 50.000 15.13 13.82 0.00 2.39
1556 1730 3.334583 TTTGAAAGCAGGCTCGAGTAT 57.665 42.857 15.13 0.00 0.00 2.12
1559 1733 1.399791 GGATTTGAAAGCAGGCTCGAG 59.600 52.381 8.45 8.45 0.00 4.04
1560 1734 1.271325 TGGATTTGAAAGCAGGCTCGA 60.271 47.619 0.00 0.00 0.00 4.04
1561 1735 1.167851 TGGATTTGAAAGCAGGCTCG 58.832 50.000 0.00 0.00 0.00 5.03
1562 1736 2.737679 GCATGGATTTGAAAGCAGGCTC 60.738 50.000 0.00 0.00 0.00 4.70
1563 1737 1.206371 GCATGGATTTGAAAGCAGGCT 59.794 47.619 0.00 0.00 0.00 4.58
1564 1738 1.066716 TGCATGGATTTGAAAGCAGGC 60.067 47.619 0.00 0.00 0.00 4.85
1565 1739 2.494471 TCTGCATGGATTTGAAAGCAGG 59.506 45.455 13.73 0.00 46.84 4.85
1569 1743 3.837213 ACGTCTGCATGGATTTGAAAG 57.163 42.857 0.00 0.00 0.00 2.62
1571 1745 3.932710 GAGTACGTCTGCATGGATTTGAA 59.067 43.478 0.00 0.00 0.00 2.69
1572 1746 3.195610 AGAGTACGTCTGCATGGATTTGA 59.804 43.478 0.00 0.00 32.57 2.69
1574 1748 3.895232 AGAGTACGTCTGCATGGATTT 57.105 42.857 0.00 0.00 32.57 2.17
1575 1749 3.699538 TGTAGAGTACGTCTGCATGGATT 59.300 43.478 0.00 0.00 42.45 3.01
1576 1750 3.288092 TGTAGAGTACGTCTGCATGGAT 58.712 45.455 0.00 0.00 42.45 3.41
1577 1751 2.718563 TGTAGAGTACGTCTGCATGGA 58.281 47.619 0.00 0.00 42.45 3.41
1582 1756 5.394802 CATGGATATGTAGAGTACGTCTGC 58.605 45.833 0.00 4.86 38.35 4.26
1583 1757 5.048713 TGCATGGATATGTAGAGTACGTCTG 60.049 44.000 0.00 0.00 36.65 3.51
1584 1758 5.070685 TGCATGGATATGTAGAGTACGTCT 58.929 41.667 0.00 0.00 36.65 4.18
1585 1759 5.372547 TGCATGGATATGTAGAGTACGTC 57.627 43.478 0.00 0.00 36.65 4.34
1586 1760 5.714047 CATGCATGGATATGTAGAGTACGT 58.286 41.667 19.40 0.00 36.65 3.57
1587 1761 4.564372 GCATGCATGGATATGTAGAGTACG 59.436 45.833 27.34 0.00 36.65 3.67
1588 1762 5.482006 TGCATGCATGGATATGTAGAGTAC 58.518 41.667 27.34 6.53 36.65 2.73
1589 1763 5.743636 TGCATGCATGGATATGTAGAGTA 57.256 39.130 27.34 0.00 36.65 2.59
1590 1764 4.628963 TGCATGCATGGATATGTAGAGT 57.371 40.909 27.34 0.00 36.65 3.24
1617 1791 3.239254 CGCGTAAGTACAGTTGATGTCA 58.761 45.455 0.00 0.00 40.00 3.58
1618 1792 3.059044 CACGCGTAAGTACAGTTGATGTC 59.941 47.826 13.44 0.00 40.00 3.06
1621 1795 1.990563 GCACGCGTAAGTACAGTTGAT 59.009 47.619 13.44 0.00 41.68 2.57
1622 1796 1.269154 TGCACGCGTAAGTACAGTTGA 60.269 47.619 13.44 0.00 41.68 3.18
1623 1797 1.124297 CTGCACGCGTAAGTACAGTTG 59.876 52.381 13.44 0.00 41.68 3.16
1624 1798 1.415374 CTGCACGCGTAAGTACAGTT 58.585 50.000 13.44 0.00 41.68 3.16
1625 1799 0.388134 CCTGCACGCGTAAGTACAGT 60.388 55.000 13.44 0.00 41.68 3.55
1627 1801 0.387622 GTCCTGCACGCGTAAGTACA 60.388 55.000 13.44 4.61 41.68 2.90
1628 1802 0.387622 TGTCCTGCACGCGTAAGTAC 60.388 55.000 13.44 10.65 41.68 2.73
1629 1803 0.528924 ATGTCCTGCACGCGTAAGTA 59.471 50.000 13.44 0.00 41.68 2.24
1630 1804 1.014044 CATGTCCTGCACGCGTAAGT 61.014 55.000 13.44 0.00 41.68 2.24
1631 1805 0.735978 TCATGTCCTGCACGCGTAAG 60.736 55.000 13.44 13.07 43.44 2.34
1632 1806 0.108377 ATCATGTCCTGCACGCGTAA 60.108 50.000 13.44 1.74 0.00 3.18
1633 1807 0.527600 GATCATGTCCTGCACGCGTA 60.528 55.000 13.44 0.00 0.00 4.42
1634 1808 1.811266 GATCATGTCCTGCACGCGT 60.811 57.895 5.58 5.58 0.00 6.01
1635 1809 2.863853 CGATCATGTCCTGCACGCG 61.864 63.158 3.53 3.53 0.00 6.01
1636 1810 2.528743 CCGATCATGTCCTGCACGC 61.529 63.158 0.00 0.00 0.00 5.34
1637 1811 2.528743 GCCGATCATGTCCTGCACG 61.529 63.158 0.00 0.00 0.00 5.34
1919 2117 2.126580 AGCTTCCACGCGTCGTAC 60.127 61.111 9.86 0.00 38.32 3.67
2165 2363 3.941657 GAGCAGCGTCCAGGACACC 62.942 68.421 20.13 9.59 32.09 4.16
2278 2476 3.090765 ACCCCATCTTGGTGAGCC 58.909 61.111 0.00 0.00 35.17 4.70
2694 2892 1.519719 GCGTGAGGAGGAGCTGAAT 59.480 57.895 0.00 0.00 0.00 2.57
2720 2918 4.320057 GCTATGATCTATTTGGTGTGCTGC 60.320 45.833 0.00 0.00 0.00 5.25
2723 2921 4.136796 TGGCTATGATCTATTTGGTGTGC 58.863 43.478 0.00 0.00 0.00 4.57
2738 2936 0.179145 GTGCAAGCAAGCTGGCTATG 60.179 55.000 18.09 17.08 45.07 2.23
2739 2937 0.323178 AGTGCAAGCAAGCTGGCTAT 60.323 50.000 18.09 3.84 45.07 2.97
2740 2938 0.324614 TAGTGCAAGCAAGCTGGCTA 59.675 50.000 18.09 0.00 45.07 3.93
2749 2947 0.963225 TAGGTCGTGTAGTGCAAGCA 59.037 50.000 0.00 0.00 0.00 3.91
2758 2956 2.440796 CCCGGGCTAGGTCGTGTA 60.441 66.667 8.08 0.00 0.00 2.90
2949 3161 8.554528 CATGCTAGTCTCACTTGGTATATTTTG 58.445 37.037 0.00 0.00 0.00 2.44
2950 3162 7.227512 GCATGCTAGTCTCACTTGGTATATTTT 59.772 37.037 11.37 0.00 0.00 1.82
2951 3163 6.708054 GCATGCTAGTCTCACTTGGTATATTT 59.292 38.462 11.37 0.00 0.00 1.40
2952 3164 6.183361 TGCATGCTAGTCTCACTTGGTATATT 60.183 38.462 20.33 0.00 0.00 1.28
2953 3165 5.305386 TGCATGCTAGTCTCACTTGGTATAT 59.695 40.000 20.33 0.00 0.00 0.86
3038 3253 2.593725 CATGCATGCTCCCTCGGG 60.594 66.667 20.33 0.00 0.00 5.14
3039 3254 1.597302 CTCATGCATGCTCCCTCGG 60.597 63.158 22.25 0.00 0.00 4.63
3062 3277 1.339438 GCATGCCGGATCATACTGGAT 60.339 52.381 5.05 0.00 38.49 3.41
3091 3312 1.308998 CGATCACTTAACCCCCATGC 58.691 55.000 0.00 0.00 0.00 4.06
3092 3313 2.682856 CAACGATCACTTAACCCCCATG 59.317 50.000 0.00 0.00 0.00 3.66
3093 3314 2.574369 TCAACGATCACTTAACCCCCAT 59.426 45.455 0.00 0.00 0.00 4.00
3094 3315 1.979308 TCAACGATCACTTAACCCCCA 59.021 47.619 0.00 0.00 0.00 4.96
3095 3316 2.353323 GTCAACGATCACTTAACCCCC 58.647 52.381 0.00 0.00 0.00 5.40
3234 3481 0.819582 AAAGATGCCGGCAGAAATGG 59.180 50.000 35.36 0.00 0.00 3.16
3274 3525 1.014044 GCTGCCGATCAACGAAGTCA 61.014 55.000 0.00 0.00 45.00 3.41
3275 3526 1.014044 TGCTGCCGATCAACGAAGTC 61.014 55.000 0.00 0.00 45.00 3.01
3308 3559 0.753479 TGCTTCCTCACCCGCAAAAA 60.753 50.000 0.00 0.00 0.00 1.94
3312 3563 0.326595 TTAATGCTTCCTCACCCGCA 59.673 50.000 0.00 0.00 36.75 5.69
3314 3565 4.451900 ACTTATTAATGCTTCCTCACCCG 58.548 43.478 0.00 0.00 0.00 5.28
3315 3566 5.450550 GCAACTTATTAATGCTTCCTCACCC 60.451 44.000 0.00 0.00 37.12 4.61
3316 3567 5.450550 GGCAACTTATTAATGCTTCCTCACC 60.451 44.000 0.00 0.00 39.94 4.02
3363 3866 8.964476 AAGAATTGAAAGATTTAGAGCCGATA 57.036 30.769 0.00 0.00 0.00 2.92
3388 3891 8.719648 CGATGAATCCCATTTCAAAATCAAAAA 58.280 29.630 0.00 0.00 38.98 1.94
3389 3892 7.333921 CCGATGAATCCCATTTCAAAATCAAAA 59.666 33.333 0.00 0.00 38.98 2.44
3393 3896 4.746611 GCCGATGAATCCCATTTCAAAATC 59.253 41.667 0.00 0.00 38.98 2.17
3394 3897 4.406649 AGCCGATGAATCCCATTTCAAAAT 59.593 37.500 0.00 0.00 38.98 1.82
3407 3910 3.809832 CGTTAGATTTGGAGCCGATGAAT 59.190 43.478 0.00 0.00 0.00 2.57
3408 3911 3.194861 CGTTAGATTTGGAGCCGATGAA 58.805 45.455 0.00 0.00 0.00 2.57
3443 4248 1.112113 CGGATCGGAGGAAGAGGAAA 58.888 55.000 0.00 0.00 0.00 3.13
3445 4250 1.828660 GCGGATCGGAGGAAGAGGA 60.829 63.158 4.16 0.00 0.00 3.71
3447 4252 2.731374 GGCGGATCGGAGGAAGAG 59.269 66.667 4.16 0.00 0.00 2.85
3448 4253 2.978298 ATCGGCGGATCGGAGGAAGA 62.978 60.000 7.21 0.00 0.00 2.87
3450 4255 2.520982 ATCGGCGGATCGGAGGAA 60.521 61.111 7.21 0.00 0.00 3.36
3464 4269 2.028190 CAGTGCCCCGCTAGATCG 59.972 66.667 0.00 0.00 0.00 3.69
3465 4270 2.280457 GCAGTGCCCCGCTAGATC 60.280 66.667 2.85 0.00 0.00 2.75
3466 4271 3.866582 GGCAGTGCCCCGCTAGAT 61.867 66.667 24.53 0.00 44.06 1.98
3482 4287 2.266055 GTGTCGGCCAAGAGAGGG 59.734 66.667 2.24 0.00 0.00 4.30
3483 4288 2.266055 GGTGTCGGCCAAGAGAGG 59.734 66.667 2.24 0.00 0.00 3.69
3484 4289 2.266055 GGGTGTCGGCCAAGAGAG 59.734 66.667 2.24 0.00 0.00 3.20
3485 4290 2.525629 TGGGTGTCGGCCAAGAGA 60.526 61.111 2.24 0.00 0.00 3.10
3486 4291 2.358737 GTGGGTGTCGGCCAAGAG 60.359 66.667 2.24 0.00 0.00 2.85
3487 4292 3.948719 GGTGGGTGTCGGCCAAGA 61.949 66.667 2.24 0.00 0.00 3.02
3494 4299 4.697756 ACATGGCGGTGGGTGTCG 62.698 66.667 0.00 0.00 0.00 4.35
3495 4300 2.282180 AACATGGCGGTGGGTGTC 60.282 61.111 0.00 0.00 0.00 3.67
3496 4301 2.597217 CAACATGGCGGTGGGTGT 60.597 61.111 0.00 0.00 0.00 4.16
3497 4302 4.054825 GCAACATGGCGGTGGGTG 62.055 66.667 0.00 0.00 0.00 4.61
3498 4303 2.901281 TAGCAACATGGCGGTGGGT 61.901 57.895 0.00 0.00 39.27 4.51
3499 4304 2.045438 TAGCAACATGGCGGTGGG 60.045 61.111 0.00 0.00 39.27 4.61
3500 4305 2.406616 GGTAGCAACATGGCGGTGG 61.407 63.158 0.00 0.00 39.27 4.61
3501 4306 2.749865 CGGTAGCAACATGGCGGTG 61.750 63.158 0.00 0.00 39.27 4.94
3502 4307 2.435938 CGGTAGCAACATGGCGGT 60.436 61.111 0.00 0.00 39.27 5.68
3503 4308 3.876198 GCGGTAGCAACATGGCGG 61.876 66.667 0.00 0.00 44.35 6.13
3513 4318 4.603946 GGGATGGTCGGCGGTAGC 62.604 72.222 7.21 0.00 44.18 3.58
3514 4319 2.838225 AGGGATGGTCGGCGGTAG 60.838 66.667 7.21 0.00 0.00 3.18
3515 4320 1.998444 TAGAGGGATGGTCGGCGGTA 61.998 60.000 7.21 0.00 0.00 4.02
3516 4321 2.658321 ATAGAGGGATGGTCGGCGGT 62.658 60.000 7.21 0.00 0.00 5.68
3517 4322 1.878656 GATAGAGGGATGGTCGGCGG 61.879 65.000 7.21 0.00 0.00 6.13
3518 4323 0.896019 AGATAGAGGGATGGTCGGCG 60.896 60.000 0.00 0.00 0.00 6.46
3519 4324 0.605589 CAGATAGAGGGATGGTCGGC 59.394 60.000 0.00 0.00 0.00 5.54
3520 4325 1.261480 CCAGATAGAGGGATGGTCGG 58.739 60.000 0.00 0.00 0.00 4.79
3521 4326 0.605589 GCCAGATAGAGGGATGGTCG 59.394 60.000 0.00 0.00 35.17 4.79
3522 4327 0.605589 CGCCAGATAGAGGGATGGTC 59.394 60.000 0.00 0.00 35.17 4.02
3523 4328 0.105453 ACGCCAGATAGAGGGATGGT 60.105 55.000 0.00 0.00 35.17 3.55
3524 4329 1.001406 GAACGCCAGATAGAGGGATGG 59.999 57.143 0.00 0.00 35.84 3.51
3525 4330 1.336332 CGAACGCCAGATAGAGGGATG 60.336 57.143 0.00 0.00 0.00 3.51
3526 4331 0.962489 CGAACGCCAGATAGAGGGAT 59.038 55.000 0.00 0.00 0.00 3.85
3527 4332 1.735376 GCGAACGCCAGATAGAGGGA 61.735 60.000 8.03 0.00 34.56 4.20
3528 4333 1.300233 GCGAACGCCAGATAGAGGG 60.300 63.158 8.03 0.00 34.56 4.30
3529 4334 4.327885 GCGAACGCCAGATAGAGG 57.672 61.111 8.03 0.00 34.56 3.69
3546 4351 4.695231 AAGACGACGACACCGCGG 62.695 66.667 26.86 26.86 38.76 6.46
3547 4352 3.164011 GAAGACGACGACACCGCG 61.164 66.667 0.00 0.00 39.95 6.46
3548 4353 2.081212 CAGAAGACGACGACACCGC 61.081 63.158 0.00 0.00 39.95 5.68
3549 4354 0.317603 AACAGAAGACGACGACACCG 60.318 55.000 0.00 0.00 42.50 4.94
3550 4355 1.849097 AAACAGAAGACGACGACACC 58.151 50.000 0.00 0.00 0.00 4.16
3551 4356 3.792956 TGTAAAACAGAAGACGACGACAC 59.207 43.478 0.00 0.00 0.00 3.67
3552 4357 4.031418 TGTAAAACAGAAGACGACGACA 57.969 40.909 0.00 0.00 0.00 4.35
3565 4370 2.224426 ACGGAGGCATGACTGTAAAACA 60.224 45.455 5.31 0.00 0.00 2.83
3566 4371 2.415512 GACGGAGGCATGACTGTAAAAC 59.584 50.000 5.31 0.00 0.00 2.43
3567 4372 2.301870 AGACGGAGGCATGACTGTAAAA 59.698 45.455 5.31 0.00 0.00 1.52
3568 4373 1.899814 AGACGGAGGCATGACTGTAAA 59.100 47.619 5.31 0.00 0.00 2.01
3569 4374 1.557099 AGACGGAGGCATGACTGTAA 58.443 50.000 5.31 0.00 0.00 2.41
3570 4375 1.476891 GAAGACGGAGGCATGACTGTA 59.523 52.381 5.31 0.00 0.00 2.74
3571 4376 0.247736 GAAGACGGAGGCATGACTGT 59.752 55.000 5.31 0.00 0.00 3.55
3572 4377 0.460987 GGAAGACGGAGGCATGACTG 60.461 60.000 5.31 0.00 0.00 3.51
3573 4378 0.616111 AGGAAGACGGAGGCATGACT 60.616 55.000 0.00 0.00 0.00 3.41
3574 4379 0.179097 GAGGAAGACGGAGGCATGAC 60.179 60.000 0.00 0.00 0.00 3.06
3575 4380 0.324738 AGAGGAAGACGGAGGCATGA 60.325 55.000 0.00 0.00 0.00 3.07
3576 4381 0.539051 AAGAGGAAGACGGAGGCATG 59.461 55.000 0.00 0.00 0.00 4.06
3577 4382 0.827368 GAAGAGGAAGACGGAGGCAT 59.173 55.000 0.00 0.00 0.00 4.40
3578 4383 1.258445 GGAAGAGGAAGACGGAGGCA 61.258 60.000 0.00 0.00 0.00 4.75
3579 4384 0.973496 AGGAAGAGGAAGACGGAGGC 60.973 60.000 0.00 0.00 0.00 4.70
3580 4385 1.107945 GAGGAAGAGGAAGACGGAGG 58.892 60.000 0.00 0.00 0.00 4.30
3581 4386 1.748493 CAGAGGAAGAGGAAGACGGAG 59.252 57.143 0.00 0.00 0.00 4.63
3582 4387 1.354705 TCAGAGGAAGAGGAAGACGGA 59.645 52.381 0.00 0.00 0.00 4.69
3583 4388 1.840737 TCAGAGGAAGAGGAAGACGG 58.159 55.000 0.00 0.00 0.00 4.79
3626 4441 2.266055 GTGTCGGCCAAGAGAGGG 59.734 66.667 2.24 0.00 0.00 4.30
3630 4445 2.358737 GTGGGTGTCGGCCAAGAG 60.359 66.667 2.24 0.00 0.00 2.85
3665 4480 0.605589 GCCAGATAGAGGGATGGTCG 59.394 60.000 0.00 0.00 35.17 4.79
3666 4481 0.605589 CGCCAGATAGAGGGATGGTC 59.394 60.000 0.00 0.00 35.17 4.02
3667 4482 0.105453 ACGCCAGATAGAGGGATGGT 60.105 55.000 0.00 0.00 35.17 3.55
3669 4484 1.336332 CGAACGCCAGATAGAGGGATG 60.336 57.143 0.00 0.00 0.00 3.51
3670 4485 0.962489 CGAACGCCAGATAGAGGGAT 59.038 55.000 0.00 0.00 0.00 3.85
3671 4486 1.735376 GCGAACGCCAGATAGAGGGA 61.735 60.000 8.03 0.00 34.56 4.20
3697 4514 0.992802 CTAAAGCAGAAGACGGCGAC 59.007 55.000 16.62 7.87 41.73 5.19
3698 4515 0.108804 CCTAAAGCAGAAGACGGCGA 60.109 55.000 16.62 0.00 41.73 5.54
3699 4516 1.084370 CCCTAAAGCAGAAGACGGCG 61.084 60.000 4.80 4.80 41.73 6.46
3700 4517 0.036294 ACCCTAAAGCAGAAGACGGC 60.036 55.000 0.00 0.00 37.48 5.68
3701 4518 2.076863 CAACCCTAAAGCAGAAGACGG 58.923 52.381 0.00 0.00 0.00 4.79
3702 4519 2.480419 CACAACCCTAAAGCAGAAGACG 59.520 50.000 0.00 0.00 0.00 4.18
3703 4520 2.226674 GCACAACCCTAAAGCAGAAGAC 59.773 50.000 0.00 0.00 0.00 3.01
3704 4521 2.504367 GCACAACCCTAAAGCAGAAGA 58.496 47.619 0.00 0.00 0.00 2.87
3705 4522 1.541588 GGCACAACCCTAAAGCAGAAG 59.458 52.381 0.00 0.00 0.00 2.85
3706 4523 1.144913 AGGCACAACCCTAAAGCAGAA 59.855 47.619 0.00 0.00 40.58 3.02
3707 4524 0.771127 AGGCACAACCCTAAAGCAGA 59.229 50.000 0.00 0.00 40.58 4.26
3708 4525 1.168714 GAGGCACAACCCTAAAGCAG 58.831 55.000 0.00 0.00 40.58 4.24
3709 4526 0.251165 GGAGGCACAACCCTAAAGCA 60.251 55.000 0.00 0.00 40.58 3.91
3710 4527 0.251165 TGGAGGCACAACCCTAAAGC 60.251 55.000 0.00 0.00 40.58 3.51
3711 4528 1.073923 AGTGGAGGCACAACCCTAAAG 59.926 52.381 0.00 0.00 40.58 1.85
3712 4529 1.145571 AGTGGAGGCACAACCCTAAA 58.854 50.000 0.00 0.00 40.58 1.85
3713 4530 1.073284 GAAGTGGAGGCACAACCCTAA 59.927 52.381 0.00 0.00 40.58 2.69
3714 4531 0.690762 GAAGTGGAGGCACAACCCTA 59.309 55.000 0.00 0.00 40.58 3.53
3715 4532 1.456287 GAAGTGGAGGCACAACCCT 59.544 57.895 0.00 0.00 40.58 4.34
3716 4533 1.603739 GGAAGTGGAGGCACAACCC 60.604 63.158 0.00 0.00 40.58 4.11
3717 4534 1.966451 CGGAAGTGGAGGCACAACC 60.966 63.158 0.00 0.00 39.61 3.77
3718 4535 3.655481 CGGAAGTGGAGGCACAAC 58.345 61.111 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.