Multiple sequence alignment - TraesCS6B01G448600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G448600 chr6B 100.000 2846 0 0 1 2846 708219923 708222768 0.000000e+00 5256
1 TraesCS6B01G448600 chr6B 94.473 1556 66 11 820 2363 118026067 118027614 0.000000e+00 2379
2 TraesCS6B01G448600 chr6B 98.604 1289 14 3 1077 2364 671129216 671130501 0.000000e+00 2278
3 TraesCS6B01G448600 chr6B 97.912 814 11 2 1 813 671128327 671129135 0.000000e+00 1404
4 TraesCS6B01G448600 chr6B 95.197 812 38 1 3 813 118024706 118025517 0.000000e+00 1282
5 TraesCS6B01G448600 chr3B 95.741 2395 60 20 1 2363 283637843 283640227 0.000000e+00 3819
6 TraesCS6B01G448600 chr5B 94.821 1564 60 9 820 2366 382535217 382536776 0.000000e+00 2420
7 TraesCS6B01G448600 chr5B 91.124 507 28 7 1873 2364 680364484 680363980 0.000000e+00 671
8 TraesCS6B01G448600 chr7A 94.619 1561 53 11 823 2366 674509826 674508280 0.000000e+00 2388
9 TraesCS6B01G448600 chr7A 96.929 814 24 1 1 813 674511195 674510382 0.000000e+00 1363
10 TraesCS6B01G448600 chr4A 94.593 1572 29 15 820 2362 690356682 690358226 0.000000e+00 2381
11 TraesCS6B01G448600 chr4A 97.297 814 21 1 1 813 690355314 690356127 0.000000e+00 1380
12 TraesCS6B01G448600 chr2D 94.162 1576 44 11 823 2367 518249912 518251470 0.000000e+00 2357
13 TraesCS6B01G448600 chr2D 95.684 811 34 1 1 810 518214710 518215520 0.000000e+00 1303
14 TraesCS6B01G448600 chr5A 93.930 1565 53 22 823 2364 676353588 676355133 0.000000e+00 2326
15 TraesCS6B01G448600 chr5A 96.314 814 29 1 1 813 676352219 676353032 0.000000e+00 1336
16 TraesCS6B01G448600 chr7D 89.087 1567 130 25 823 2360 118903328 118901774 0.000000e+00 1908
17 TraesCS6B01G448600 chr7D 93.170 1303 74 9 820 2114 58620598 58621893 0.000000e+00 1899
18 TraesCS6B01G448600 chr7D 94.186 258 14 1 2110 2367 58621928 58622184 2.660000e-105 392
19 TraesCS6B01G448600 chrUn 95.577 814 34 2 1 813 50576376 50577188 0.000000e+00 1303
20 TraesCS6B01G448600 chr1B 95.209 814 38 1 1 813 638557294 638556481 0.000000e+00 1286
21 TraesCS6B01G448600 chr6D 90.556 180 14 3 2669 2846 464461949 464462127 4.740000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G448600 chr6B 708219923 708222768 2845 False 5256.0 5256 100.000 1 2846 1 chr6B.!!$F1 2845
1 TraesCS6B01G448600 chr6B 671128327 671130501 2174 False 1841.0 2278 98.258 1 2364 2 chr6B.!!$F3 2363
2 TraesCS6B01G448600 chr6B 118024706 118027614 2908 False 1830.5 2379 94.835 3 2363 2 chr6B.!!$F2 2360
3 TraesCS6B01G448600 chr3B 283637843 283640227 2384 False 3819.0 3819 95.741 1 2363 1 chr3B.!!$F1 2362
4 TraesCS6B01G448600 chr5B 382535217 382536776 1559 False 2420.0 2420 94.821 820 2366 1 chr5B.!!$F1 1546
5 TraesCS6B01G448600 chr5B 680363980 680364484 504 True 671.0 671 91.124 1873 2364 1 chr5B.!!$R1 491
6 TraesCS6B01G448600 chr7A 674508280 674511195 2915 True 1875.5 2388 95.774 1 2366 2 chr7A.!!$R1 2365
7 TraesCS6B01G448600 chr4A 690355314 690358226 2912 False 1880.5 2381 95.945 1 2362 2 chr4A.!!$F1 2361
8 TraesCS6B01G448600 chr2D 518249912 518251470 1558 False 2357.0 2357 94.162 823 2367 1 chr2D.!!$F2 1544
9 TraesCS6B01G448600 chr2D 518214710 518215520 810 False 1303.0 1303 95.684 1 810 1 chr2D.!!$F1 809
10 TraesCS6B01G448600 chr5A 676352219 676355133 2914 False 1831.0 2326 95.122 1 2364 2 chr5A.!!$F1 2363
11 TraesCS6B01G448600 chr7D 118901774 118903328 1554 True 1908.0 1908 89.087 823 2360 1 chr7D.!!$R1 1537
12 TraesCS6B01G448600 chr7D 58620598 58622184 1586 False 1145.5 1899 93.678 820 2367 2 chr7D.!!$F1 1547
13 TraesCS6B01G448600 chrUn 50576376 50577188 812 False 1303.0 1303 95.577 1 813 1 chrUn.!!$F1 812
14 TraesCS6B01G448600 chr1B 638556481 638557294 813 True 1286.0 1286 95.209 1 813 1 chr1B.!!$R1 812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 1417 0.110295 TTGTGTGGTAGCATGCTGGT 59.89 50.0 30.42 6.83 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2501 3136 0.105862 CCCCACCATCTCATTGGCAT 60.106 55.0 0.0 0.0 40.68 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 154 3.178865 ACTTATGAGGGGTCCGAGAAAA 58.821 45.455 0.00 0.00 0.00 2.29
228 230 1.324383 TGCGTGAGAAGTGTGGTCTA 58.676 50.000 0.00 0.00 0.00 2.59
431 434 3.439260 CCTGATCCTTCTATCACCCCTCT 60.439 52.174 0.00 0.00 32.51 3.69
613 616 3.451178 TCTCTATGTTCTACCTGGTTGGC 59.549 47.826 3.84 0.83 40.22 4.52
626 629 0.893727 GGTTGGCAGGGTTCGTCATT 60.894 55.000 0.00 0.00 0.00 2.57
813 816 7.888514 ATACCAATGGACCTGGATTTCTATA 57.111 36.000 6.16 0.00 37.40 1.31
814 817 5.941788 ACCAATGGACCTGGATTTCTATAC 58.058 41.667 6.16 0.00 37.40 1.47
816 819 5.163099 CCAATGGACCTGGATTTCTATACCA 60.163 44.000 0.00 0.00 35.85 3.25
818 821 6.590656 ATGGACCTGGATTTCTATACCAAA 57.409 37.500 0.00 0.00 33.14 3.28
821 1373 6.674861 TGGACCTGGATTTCTATACCAAAGTA 59.325 38.462 0.00 0.00 33.14 2.24
825 1377 9.448587 ACCTGGATTTCTATACCAAAGTACTAT 57.551 33.333 0.00 0.00 33.14 2.12
865 1417 0.110295 TTGTGTGGTAGCATGCTGGT 59.890 50.000 30.42 6.83 0.00 4.00
915 1467 6.701400 GGTTGTACATGCTTCATCTTTTGTTT 59.299 34.615 0.00 0.00 0.00 2.83
1184 1741 8.843262 CAAGGATACATGTGATGTTGACATTAT 58.157 33.333 9.11 0.00 41.63 1.28
1972 2552 8.094548 TGTGCTATGTGTAAGAGACATAAACTT 58.905 33.333 0.00 0.00 41.14 2.66
2282 2917 8.066612 ACCAAACAATAGAATTCGAATTGGAT 57.933 30.769 27.27 16.34 38.47 3.41
2367 3002 2.846193 ACATCCAAACACAGCGTAAGT 58.154 42.857 0.00 0.00 41.68 2.24
2368 3003 3.997762 ACATCCAAACACAGCGTAAGTA 58.002 40.909 0.00 0.00 41.68 2.24
2369 3004 3.744426 ACATCCAAACACAGCGTAAGTAC 59.256 43.478 0.00 0.00 41.68 2.73
2390 3025 3.802423 CGATGCAAATCGTGACATATGG 58.198 45.455 7.80 0.00 39.07 2.74
2391 3026 3.494251 CGATGCAAATCGTGACATATGGA 59.506 43.478 7.80 0.00 39.07 3.41
2392 3027 4.609113 CGATGCAAATCGTGACATATGGAC 60.609 45.833 7.80 2.47 39.07 4.02
2393 3028 2.942376 TGCAAATCGTGACATATGGACC 59.058 45.455 7.80 0.00 0.00 4.46
2394 3029 2.290641 GCAAATCGTGACATATGGACCC 59.709 50.000 7.80 0.00 0.00 4.46
2395 3030 3.540617 CAAATCGTGACATATGGACCCA 58.459 45.455 7.80 0.00 0.00 4.51
2396 3031 3.924114 AATCGTGACATATGGACCCAA 57.076 42.857 7.80 0.00 0.00 4.12
2397 3032 4.437682 AATCGTGACATATGGACCCAAT 57.562 40.909 7.80 0.00 0.00 3.16
2398 3033 3.192541 TCGTGACATATGGACCCAATG 57.807 47.619 7.80 1.90 0.00 2.82
2399 3034 2.158827 TCGTGACATATGGACCCAATGG 60.159 50.000 7.80 0.00 37.80 3.16
2415 3050 5.301835 CCAATGGGAGAGTGATATTGAGT 57.698 43.478 0.00 0.00 35.59 3.41
2416 3051 5.688807 CCAATGGGAGAGTGATATTGAGTT 58.311 41.667 0.00 0.00 35.59 3.01
2417 3052 5.530171 CCAATGGGAGAGTGATATTGAGTTG 59.470 44.000 0.00 0.00 35.59 3.16
2418 3053 5.965033 ATGGGAGAGTGATATTGAGTTGT 57.035 39.130 0.00 0.00 0.00 3.32
2419 3054 5.762179 TGGGAGAGTGATATTGAGTTGTT 57.238 39.130 0.00 0.00 0.00 2.83
2420 3055 6.126863 TGGGAGAGTGATATTGAGTTGTTT 57.873 37.500 0.00 0.00 0.00 2.83
2421 3056 7.252612 TGGGAGAGTGATATTGAGTTGTTTA 57.747 36.000 0.00 0.00 0.00 2.01
2422 3057 7.861629 TGGGAGAGTGATATTGAGTTGTTTAT 58.138 34.615 0.00 0.00 0.00 1.40
2423 3058 8.328758 TGGGAGAGTGATATTGAGTTGTTTATT 58.671 33.333 0.00 0.00 0.00 1.40
2424 3059 8.616076 GGGAGAGTGATATTGAGTTGTTTATTG 58.384 37.037 0.00 0.00 0.00 1.90
2425 3060 9.167311 GGAGAGTGATATTGAGTTGTTTATTGT 57.833 33.333 0.00 0.00 0.00 2.71
2450 3085 9.959775 GTTTTTGAGATAGTTAACTTGATCTCG 57.040 33.333 27.73 0.00 44.82 4.04
2451 3086 8.703604 TTTTGAGATAGTTAACTTGATCTCGG 57.296 34.615 27.73 0.00 44.82 4.63
2452 3087 6.392625 TGAGATAGTTAACTTGATCTCGGG 57.607 41.667 27.73 0.00 44.82 5.14
2453 3088 5.203060 AGATAGTTAACTTGATCTCGGGC 57.797 43.478 14.49 0.00 0.00 6.13
2454 3089 2.693267 AGTTAACTTGATCTCGGGCC 57.307 50.000 1.12 0.00 0.00 5.80
2455 3090 1.906574 AGTTAACTTGATCTCGGGCCA 59.093 47.619 4.39 0.00 0.00 5.36
2456 3091 2.505819 AGTTAACTTGATCTCGGGCCAT 59.494 45.455 4.39 0.00 0.00 4.40
2457 3092 2.614057 GTTAACTTGATCTCGGGCCATG 59.386 50.000 4.39 0.00 0.00 3.66
2458 3093 0.620556 AACTTGATCTCGGGCCATGT 59.379 50.000 4.39 0.00 0.00 3.21
2459 3094 0.179000 ACTTGATCTCGGGCCATGTC 59.821 55.000 4.39 0.00 0.00 3.06
2460 3095 0.877649 CTTGATCTCGGGCCATGTCG 60.878 60.000 4.39 0.00 0.00 4.35
2461 3096 1.613317 TTGATCTCGGGCCATGTCGT 61.613 55.000 4.39 0.00 0.00 4.34
2462 3097 1.300233 GATCTCGGGCCATGTCGTC 60.300 63.158 4.39 0.00 0.00 4.20
2463 3098 3.138930 ATCTCGGGCCATGTCGTCG 62.139 63.158 4.39 0.00 0.00 5.12
2467 3102 3.576356 GGGCCATGTCGTCGCATG 61.576 66.667 17.39 17.39 44.18 4.06
2468 3103 2.819595 GGCCATGTCGTCGCATGT 60.820 61.111 20.53 0.00 43.33 3.21
2469 3104 2.703409 GCCATGTCGTCGCATGTC 59.297 61.111 20.53 10.36 43.33 3.06
2470 3105 2.813179 GCCATGTCGTCGCATGTCC 61.813 63.158 20.53 12.00 43.33 4.02
2471 3106 1.153568 CCATGTCGTCGCATGTCCT 60.154 57.895 20.53 0.00 43.33 3.85
2472 3107 0.740868 CCATGTCGTCGCATGTCCTT 60.741 55.000 20.53 0.00 43.33 3.36
2473 3108 0.647410 CATGTCGTCGCATGTCCTTC 59.353 55.000 16.56 0.00 40.81 3.46
2474 3109 0.532573 ATGTCGTCGCATGTCCTTCT 59.467 50.000 0.00 0.00 0.00 2.85
2475 3110 0.109272 TGTCGTCGCATGTCCTTCTC 60.109 55.000 0.00 0.00 0.00 2.87
2476 3111 0.109272 GTCGTCGCATGTCCTTCTCA 60.109 55.000 0.00 0.00 0.00 3.27
2477 3112 0.817654 TCGTCGCATGTCCTTCTCAT 59.182 50.000 0.00 0.00 0.00 2.90
2478 3113 1.204704 TCGTCGCATGTCCTTCTCATT 59.795 47.619 0.00 0.00 0.00 2.57
2479 3114 2.425668 TCGTCGCATGTCCTTCTCATTA 59.574 45.455 0.00 0.00 0.00 1.90
2480 3115 3.068165 TCGTCGCATGTCCTTCTCATTAT 59.932 43.478 0.00 0.00 0.00 1.28
2481 3116 3.804325 CGTCGCATGTCCTTCTCATTATT 59.196 43.478 0.00 0.00 0.00 1.40
2482 3117 4.271049 CGTCGCATGTCCTTCTCATTATTT 59.729 41.667 0.00 0.00 0.00 1.40
2483 3118 5.462068 CGTCGCATGTCCTTCTCATTATTTA 59.538 40.000 0.00 0.00 0.00 1.40
2484 3119 6.146184 CGTCGCATGTCCTTCTCATTATTTAT 59.854 38.462 0.00 0.00 0.00 1.40
2485 3120 7.293745 GTCGCATGTCCTTCTCATTATTTATG 58.706 38.462 0.00 0.00 35.45 1.90
2486 3121 7.171508 GTCGCATGTCCTTCTCATTATTTATGA 59.828 37.037 0.00 0.00 40.96 2.15
2487 3122 7.879677 TCGCATGTCCTTCTCATTATTTATGAT 59.120 33.333 0.00 0.00 42.26 2.45
2488 3123 8.173775 CGCATGTCCTTCTCATTATTTATGATC 58.826 37.037 0.00 0.00 42.26 2.92
2489 3124 9.006839 GCATGTCCTTCTCATTATTTATGATCA 57.993 33.333 0.00 0.00 42.26 2.92
2494 3129 9.060347 TCCTTCTCATTATTTATGATCAAGTGC 57.940 33.333 0.00 0.00 42.26 4.40
2495 3130 9.064706 CCTTCTCATTATTTATGATCAAGTGCT 57.935 33.333 0.00 0.00 42.26 4.40
2496 3131 9.880064 CTTCTCATTATTTATGATCAAGTGCTG 57.120 33.333 0.00 0.00 42.26 4.41
2497 3132 8.387190 TCTCATTATTTATGATCAAGTGCTGG 57.613 34.615 0.00 0.00 42.26 4.85
2498 3133 7.994911 TCTCATTATTTATGATCAAGTGCTGGT 59.005 33.333 0.00 0.00 42.26 4.00
2499 3134 8.523915 TCATTATTTATGATCAAGTGCTGGTT 57.476 30.769 0.00 0.00 38.35 3.67
2500 3135 9.625747 TCATTATTTATGATCAAGTGCTGGTTA 57.374 29.630 0.00 0.00 38.35 2.85
2504 3139 4.644103 ATGATCAAGTGCTGGTTAATGC 57.356 40.909 0.00 0.00 0.00 3.56
2505 3140 2.754552 TGATCAAGTGCTGGTTAATGCC 59.245 45.455 0.00 0.00 0.00 4.40
2506 3141 2.284754 TCAAGTGCTGGTTAATGCCA 57.715 45.000 0.00 0.00 36.97 4.92
2507 3142 2.591923 TCAAGTGCTGGTTAATGCCAA 58.408 42.857 0.00 0.00 38.18 4.52
2508 3143 3.164268 TCAAGTGCTGGTTAATGCCAAT 58.836 40.909 0.00 0.00 38.18 3.16
2509 3144 3.056678 TCAAGTGCTGGTTAATGCCAATG 60.057 43.478 0.00 0.00 38.18 2.82
2510 3145 2.806434 AGTGCTGGTTAATGCCAATGA 58.194 42.857 0.00 0.00 38.18 2.57
2511 3146 2.756760 AGTGCTGGTTAATGCCAATGAG 59.243 45.455 0.00 0.00 38.18 2.90
2512 3147 2.754552 GTGCTGGTTAATGCCAATGAGA 59.245 45.455 0.00 0.00 38.18 3.27
2513 3148 3.382546 GTGCTGGTTAATGCCAATGAGAT 59.617 43.478 0.00 0.00 38.18 2.75
2514 3149 3.382227 TGCTGGTTAATGCCAATGAGATG 59.618 43.478 0.00 0.00 38.18 2.90
2515 3150 3.243636 GCTGGTTAATGCCAATGAGATGG 60.244 47.826 0.00 0.00 43.70 3.51
2516 3151 3.956199 CTGGTTAATGCCAATGAGATGGT 59.044 43.478 0.00 0.00 42.75 3.55
2517 3152 3.700539 TGGTTAATGCCAATGAGATGGTG 59.299 43.478 0.00 0.00 42.75 4.17
2518 3153 3.068590 GGTTAATGCCAATGAGATGGTGG 59.931 47.826 0.00 0.00 42.75 4.61
2519 3154 1.784358 AATGCCAATGAGATGGTGGG 58.216 50.000 0.00 0.00 42.75 4.61
2520 3155 0.105862 ATGCCAATGAGATGGTGGGG 60.106 55.000 0.00 0.00 42.75 4.96
2521 3156 1.307647 GCCAATGAGATGGTGGGGT 59.692 57.895 0.00 0.00 42.75 4.95
2522 3157 0.753111 GCCAATGAGATGGTGGGGTC 60.753 60.000 0.00 0.00 42.75 4.46
2523 3158 0.106519 CCAATGAGATGGTGGGGTCC 60.107 60.000 0.00 0.00 35.65 4.46
2524 3159 0.625316 CAATGAGATGGTGGGGTCCA 59.375 55.000 0.00 0.00 42.01 4.02
2526 3161 2.442878 CAATGAGATGGTGGGGTCCATA 59.557 50.000 0.00 0.00 46.72 2.74
2527 3162 2.512910 TGAGATGGTGGGGTCCATAT 57.487 50.000 0.00 0.00 46.72 1.78
2529 3164 2.625639 GAGATGGTGGGGTCCATATCT 58.374 52.381 11.52 13.00 46.49 1.98
2530 3165 2.569404 GAGATGGTGGGGTCCATATCTC 59.431 54.545 18.95 18.95 46.49 2.75
2531 3166 2.089982 AGATGGTGGGGTCCATATCTCA 60.090 50.000 9.41 0.00 46.72 3.27
2532 3167 1.806496 TGGTGGGGTCCATATCTCAG 58.194 55.000 0.00 0.00 35.28 3.35
2533 3168 1.009552 TGGTGGGGTCCATATCTCAGT 59.990 52.381 0.00 0.00 35.28 3.41
2534 3169 1.417890 GGTGGGGTCCATATCTCAGTG 59.582 57.143 0.00 0.00 35.28 3.66
2535 3170 1.417890 GTGGGGTCCATATCTCAGTGG 59.582 57.143 0.00 0.00 35.28 4.00
2536 3171 1.009552 TGGGGTCCATATCTCAGTGGT 59.990 52.381 0.00 0.00 36.84 4.16
2537 3172 2.248950 TGGGGTCCATATCTCAGTGGTA 59.751 50.000 0.00 0.00 36.84 3.25
2538 3173 2.900546 GGGGTCCATATCTCAGTGGTAG 59.099 54.545 0.00 0.00 36.84 3.18
2539 3174 3.438078 GGGGTCCATATCTCAGTGGTAGA 60.438 52.174 0.00 0.00 36.84 2.59
2540 3175 3.829601 GGGTCCATATCTCAGTGGTAGAG 59.170 52.174 0.00 0.00 36.84 2.43
2541 3176 3.257127 GGTCCATATCTCAGTGGTAGAGC 59.743 52.174 0.00 0.00 36.84 4.09
2542 3177 3.891977 GTCCATATCTCAGTGGTAGAGCA 59.108 47.826 0.00 0.00 36.84 4.26
2543 3178 4.526262 GTCCATATCTCAGTGGTAGAGCAT 59.474 45.833 0.00 0.00 36.84 3.79
2544 3179 5.011533 GTCCATATCTCAGTGGTAGAGCATT 59.988 44.000 0.00 0.00 36.84 3.56
2545 3180 5.604231 TCCATATCTCAGTGGTAGAGCATTT 59.396 40.000 0.00 0.00 36.84 2.32
2546 3181 5.699915 CCATATCTCAGTGGTAGAGCATTTG 59.300 44.000 0.00 0.00 33.15 2.32
2547 3182 6.463472 CCATATCTCAGTGGTAGAGCATTTGA 60.463 42.308 0.00 0.00 33.15 2.69
2548 3183 4.193826 TCTCAGTGGTAGAGCATTTGAC 57.806 45.455 0.00 0.00 33.15 3.18
2549 3184 3.834813 TCTCAGTGGTAGAGCATTTGACT 59.165 43.478 0.00 0.00 33.15 3.41
2550 3185 3.930336 TCAGTGGTAGAGCATTTGACTG 58.070 45.455 0.00 0.00 0.00 3.51
2551 3186 3.324846 TCAGTGGTAGAGCATTTGACTGT 59.675 43.478 0.00 0.00 32.85 3.55
2552 3187 3.434641 CAGTGGTAGAGCATTTGACTGTG 59.565 47.826 0.00 0.00 0.00 3.66
2553 3188 2.160417 GTGGTAGAGCATTTGACTGTGC 59.840 50.000 0.00 0.00 41.57 4.57
2554 3189 2.224499 TGGTAGAGCATTTGACTGTGCA 60.224 45.455 0.00 0.00 43.63 4.57
2555 3190 3.012518 GGTAGAGCATTTGACTGTGCAT 58.987 45.455 0.00 0.00 43.63 3.96
2556 3191 3.064545 GGTAGAGCATTTGACTGTGCATC 59.935 47.826 0.00 0.00 43.63 3.91
2557 3192 2.786777 AGAGCATTTGACTGTGCATCA 58.213 42.857 0.00 0.00 43.63 3.07
2558 3193 3.151554 AGAGCATTTGACTGTGCATCAA 58.848 40.909 0.00 0.00 43.63 2.57
2559 3194 3.190744 AGAGCATTTGACTGTGCATCAAG 59.809 43.478 1.79 0.00 43.63 3.02
2560 3195 3.151554 AGCATTTGACTGTGCATCAAGA 58.848 40.909 1.79 0.00 43.63 3.02
2561 3196 3.190744 AGCATTTGACTGTGCATCAAGAG 59.809 43.478 1.79 1.08 43.63 2.85
2562 3197 3.672511 GCATTTGACTGTGCATCAAGAGG 60.673 47.826 1.79 0.00 40.94 3.69
2563 3198 2.936919 TTGACTGTGCATCAAGAGGT 57.063 45.000 0.00 0.00 32.34 3.85
2564 3199 2.462456 TGACTGTGCATCAAGAGGTC 57.538 50.000 0.00 0.00 0.00 3.85
2565 3200 1.693606 TGACTGTGCATCAAGAGGTCA 59.306 47.619 0.00 0.00 0.00 4.02
2566 3201 2.072298 GACTGTGCATCAAGAGGTCAC 58.928 52.381 0.00 3.54 0.00 3.67
2567 3202 1.696336 ACTGTGCATCAAGAGGTCACT 59.304 47.619 0.00 0.00 0.00 3.41
2568 3203 2.899900 ACTGTGCATCAAGAGGTCACTA 59.100 45.455 0.00 0.00 0.00 2.74
2569 3204 3.056250 ACTGTGCATCAAGAGGTCACTAG 60.056 47.826 0.00 0.00 0.00 2.57
2570 3205 2.899900 TGTGCATCAAGAGGTCACTAGT 59.100 45.455 0.00 0.00 0.00 2.57
2571 3206 3.324846 TGTGCATCAAGAGGTCACTAGTT 59.675 43.478 0.00 0.00 0.00 2.24
2572 3207 4.202357 TGTGCATCAAGAGGTCACTAGTTT 60.202 41.667 0.00 0.00 0.00 2.66
2573 3208 4.153117 GTGCATCAAGAGGTCACTAGTTTG 59.847 45.833 0.00 0.00 0.00 2.93
2574 3209 4.040339 TGCATCAAGAGGTCACTAGTTTGA 59.960 41.667 7.65 7.65 0.00 2.69
2575 3210 4.997395 GCATCAAGAGGTCACTAGTTTGAA 59.003 41.667 8.96 0.00 30.49 2.69
2576 3211 5.106908 GCATCAAGAGGTCACTAGTTTGAAC 60.107 44.000 8.96 0.48 32.91 3.18
2577 3212 4.957296 TCAAGAGGTCACTAGTTTGAACC 58.043 43.478 3.49 4.64 33.22 3.62
2578 3213 4.065789 CAAGAGGTCACTAGTTTGAACCC 58.934 47.826 0.00 0.00 33.22 4.11
2579 3214 3.314693 AGAGGTCACTAGTTTGAACCCA 58.685 45.455 0.00 0.00 33.22 4.51
2580 3215 3.325135 AGAGGTCACTAGTTTGAACCCAG 59.675 47.826 0.00 0.00 33.22 4.45
2581 3216 3.046374 AGGTCACTAGTTTGAACCCAGT 58.954 45.455 0.00 0.00 33.22 4.00
2582 3217 3.458487 AGGTCACTAGTTTGAACCCAGTT 59.542 43.478 0.00 0.00 33.22 3.16
2583 3218 3.564225 GGTCACTAGTTTGAACCCAGTTG 59.436 47.826 0.00 0.00 0.00 3.16
2584 3219 3.564225 GTCACTAGTTTGAACCCAGTTGG 59.436 47.826 0.00 0.00 41.37 3.77
2594 3229 2.846532 CCAGTTGGGCCCTGAAGT 59.153 61.111 25.70 10.14 31.38 3.01
2595 3230 1.153756 CCAGTTGGGCCCTGAAGTT 59.846 57.895 25.70 0.00 31.38 2.66
2596 3231 0.469892 CCAGTTGGGCCCTGAAGTTT 60.470 55.000 25.70 0.00 31.38 2.66
2597 3232 0.675633 CAGTTGGGCCCTGAAGTTTG 59.324 55.000 25.70 7.91 31.38 2.93
2598 3233 0.261696 AGTTGGGCCCTGAAGTTTGT 59.738 50.000 25.70 0.00 0.00 2.83
2599 3234 1.119684 GTTGGGCCCTGAAGTTTGTT 58.880 50.000 25.70 0.00 0.00 2.83
2600 3235 1.484653 GTTGGGCCCTGAAGTTTGTTT 59.515 47.619 25.70 0.00 0.00 2.83
2601 3236 1.872773 TGGGCCCTGAAGTTTGTTTT 58.127 45.000 25.70 0.00 0.00 2.43
2602 3237 2.192263 TGGGCCCTGAAGTTTGTTTTT 58.808 42.857 25.70 0.00 0.00 1.94
2603 3238 3.375699 TGGGCCCTGAAGTTTGTTTTTA 58.624 40.909 25.70 0.00 0.00 1.52
2604 3239 3.970640 TGGGCCCTGAAGTTTGTTTTTAT 59.029 39.130 25.70 0.00 0.00 1.40
2605 3240 4.039852 TGGGCCCTGAAGTTTGTTTTTATC 59.960 41.667 25.70 0.00 0.00 1.75
2606 3241 4.283467 GGGCCCTGAAGTTTGTTTTTATCT 59.717 41.667 17.04 0.00 0.00 1.98
2607 3242 5.470368 GGCCCTGAAGTTTGTTTTTATCTC 58.530 41.667 0.00 0.00 0.00 2.75
2608 3243 5.243954 GGCCCTGAAGTTTGTTTTTATCTCT 59.756 40.000 0.00 0.00 0.00 3.10
2609 3244 6.382608 GCCCTGAAGTTTGTTTTTATCTCTC 58.617 40.000 0.00 0.00 0.00 3.20
2610 3245 6.207614 GCCCTGAAGTTTGTTTTTATCTCTCT 59.792 38.462 0.00 0.00 0.00 3.10
2611 3246 7.255625 GCCCTGAAGTTTGTTTTTATCTCTCTT 60.256 37.037 0.00 0.00 0.00 2.85
2612 3247 8.633561 CCCTGAAGTTTGTTTTTATCTCTCTTT 58.366 33.333 0.00 0.00 0.00 2.52
2643 3278 7.575414 TTGTCAAACTTAATTTACTGCTCCA 57.425 32.000 0.00 0.00 0.00 3.86
2644 3279 7.759489 TGTCAAACTTAATTTACTGCTCCAT 57.241 32.000 0.00 0.00 0.00 3.41
2645 3280 8.856153 TGTCAAACTTAATTTACTGCTCCATA 57.144 30.769 0.00 0.00 0.00 2.74
2646 3281 9.461312 TGTCAAACTTAATTTACTGCTCCATAT 57.539 29.630 0.00 0.00 0.00 1.78
2674 3309 8.836268 ATTTATTTCTTCATTGCACACATGTT 57.164 26.923 0.00 0.00 0.00 2.71
2675 3310 8.659925 TTTATTTCTTCATTGCACACATGTTT 57.340 26.923 0.00 0.00 0.00 2.83
2676 3311 5.970140 TTTCTTCATTGCACACATGTTTG 57.030 34.783 7.65 7.65 0.00 2.93
2677 3312 4.652421 TCTTCATTGCACACATGTTTGT 57.348 36.364 13.29 0.00 36.15 2.83
2678 3313 4.609947 TCTTCATTGCACACATGTTTGTC 58.390 39.130 13.29 6.66 32.34 3.18
2679 3314 4.338964 TCTTCATTGCACACATGTTTGTCT 59.661 37.500 13.29 0.00 32.34 3.41
2680 3315 4.652421 TCATTGCACACATGTTTGTCTT 57.348 36.364 13.29 0.00 32.34 3.01
2681 3316 4.361420 TCATTGCACACATGTTTGTCTTG 58.639 39.130 13.29 8.37 32.34 3.02
2682 3317 3.865011 TTGCACACATGTTTGTCTTGT 57.135 38.095 13.29 0.00 32.34 3.16
2683 3318 4.972514 TTGCACACATGTTTGTCTTGTA 57.027 36.364 13.29 0.00 32.34 2.41
2684 3319 5.512753 TTGCACACATGTTTGTCTTGTAT 57.487 34.783 13.29 0.00 32.34 2.29
2685 3320 5.512753 TGCACACATGTTTGTCTTGTATT 57.487 34.783 13.29 0.00 32.34 1.89
2686 3321 6.625873 TGCACACATGTTTGTCTTGTATTA 57.374 33.333 13.29 0.00 32.34 0.98
2687 3322 7.032377 TGCACACATGTTTGTCTTGTATTAA 57.968 32.000 13.29 0.00 32.34 1.40
2688 3323 7.656412 TGCACACATGTTTGTCTTGTATTAAT 58.344 30.769 13.29 0.00 32.34 1.40
2689 3324 7.807433 TGCACACATGTTTGTCTTGTATTAATC 59.193 33.333 13.29 0.00 32.34 1.75
2690 3325 8.023128 GCACACATGTTTGTCTTGTATTAATCT 58.977 33.333 13.29 0.00 32.34 2.40
2691 3326 9.333497 CACACATGTTTGTCTTGTATTAATCTG 57.667 33.333 3.74 0.00 32.34 2.90
2692 3327 9.066892 ACACATGTTTGTCTTGTATTAATCTGT 57.933 29.630 0.00 0.00 32.34 3.41
2693 3328 9.897744 CACATGTTTGTCTTGTATTAATCTGTT 57.102 29.630 0.00 0.00 32.34 3.16
2694 3329 9.897744 ACATGTTTGTCTTGTATTAATCTGTTG 57.102 29.630 0.00 0.00 33.58 3.33
2695 3330 9.897744 CATGTTTGTCTTGTATTAATCTGTTGT 57.102 29.630 0.00 0.00 0.00 3.32
2696 3331 9.897744 ATGTTTGTCTTGTATTAATCTGTTGTG 57.102 29.630 0.00 0.00 0.00 3.33
2697 3332 8.898761 TGTTTGTCTTGTATTAATCTGTTGTGT 58.101 29.630 0.00 0.00 0.00 3.72
2713 3348 3.034721 TGTGTAACAGGTTCCGATGTC 57.965 47.619 0.00 0.00 45.67 3.06
2714 3349 2.631062 TGTGTAACAGGTTCCGATGTCT 59.369 45.455 0.00 0.00 45.67 3.41
2715 3350 3.251571 GTGTAACAGGTTCCGATGTCTC 58.748 50.000 0.00 0.00 36.32 3.36
2716 3351 2.094906 TGTAACAGGTTCCGATGTCTCG 60.095 50.000 0.00 0.00 44.62 4.04
2717 3352 0.966920 AACAGGTTCCGATGTCTCGT 59.033 50.000 0.00 0.00 43.49 4.18
2718 3353 0.966920 ACAGGTTCCGATGTCTCGTT 59.033 50.000 0.00 0.00 43.49 3.85
2719 3354 1.336887 ACAGGTTCCGATGTCTCGTTG 60.337 52.381 0.00 0.00 43.49 4.10
2720 3355 0.389948 AGGTTCCGATGTCTCGTTGC 60.390 55.000 0.00 0.00 43.49 4.17
2721 3356 1.683790 GGTTCCGATGTCTCGTTGCG 61.684 60.000 0.00 0.00 43.49 4.85
2722 3357 1.445410 TTCCGATGTCTCGTTGCGG 60.445 57.895 0.00 0.00 43.49 5.69
2723 3358 3.554692 CCGATGTCTCGTTGCGGC 61.555 66.667 0.00 0.00 43.49 6.53
2724 3359 2.507102 CGATGTCTCGTTGCGGCT 60.507 61.111 0.00 0.00 40.07 5.52
2725 3360 2.792290 CGATGTCTCGTTGCGGCTG 61.792 63.158 0.00 0.00 40.07 4.85
2726 3361 1.738099 GATGTCTCGTTGCGGCTGT 60.738 57.895 0.00 0.00 0.00 4.40
2727 3362 1.959899 GATGTCTCGTTGCGGCTGTG 61.960 60.000 0.00 0.00 0.00 3.66
2728 3363 2.355837 GTCTCGTTGCGGCTGTGA 60.356 61.111 0.00 0.00 0.00 3.58
2729 3364 1.738099 GTCTCGTTGCGGCTGTGAT 60.738 57.895 0.00 0.00 0.00 3.06
2730 3365 1.737735 TCTCGTTGCGGCTGTGATG 60.738 57.895 0.00 0.00 0.00 3.07
2731 3366 2.741985 TCGTTGCGGCTGTGATGG 60.742 61.111 0.00 0.00 0.00 3.51
2732 3367 3.049674 CGTTGCGGCTGTGATGGT 61.050 61.111 0.00 0.00 0.00 3.55
2733 3368 1.739929 CGTTGCGGCTGTGATGGTA 60.740 57.895 0.00 0.00 0.00 3.25
2734 3369 1.695893 CGTTGCGGCTGTGATGGTAG 61.696 60.000 0.00 0.00 0.00 3.18
2735 3370 0.673644 GTTGCGGCTGTGATGGTAGT 60.674 55.000 0.00 0.00 0.00 2.73
2736 3371 0.673333 TTGCGGCTGTGATGGTAGTG 60.673 55.000 0.00 0.00 0.00 2.74
2737 3372 1.079127 GCGGCTGTGATGGTAGTGT 60.079 57.895 0.00 0.00 0.00 3.55
2738 3373 0.673644 GCGGCTGTGATGGTAGTGTT 60.674 55.000 0.00 0.00 0.00 3.32
2739 3374 1.078709 CGGCTGTGATGGTAGTGTTG 58.921 55.000 0.00 0.00 0.00 3.33
2740 3375 1.608025 CGGCTGTGATGGTAGTGTTGT 60.608 52.381 0.00 0.00 0.00 3.32
2741 3376 2.353307 CGGCTGTGATGGTAGTGTTGTA 60.353 50.000 0.00 0.00 0.00 2.41
2742 3377 3.678806 CGGCTGTGATGGTAGTGTTGTAT 60.679 47.826 0.00 0.00 0.00 2.29
2743 3378 3.871594 GGCTGTGATGGTAGTGTTGTATC 59.128 47.826 0.00 0.00 0.00 2.24
2744 3379 3.551890 GCTGTGATGGTAGTGTTGTATCG 59.448 47.826 0.00 0.00 0.00 2.92
2745 3380 4.112634 CTGTGATGGTAGTGTTGTATCGG 58.887 47.826 0.00 0.00 0.00 4.18
2746 3381 3.512329 TGTGATGGTAGTGTTGTATCGGT 59.488 43.478 0.00 0.00 0.00 4.69
2747 3382 4.020928 TGTGATGGTAGTGTTGTATCGGTT 60.021 41.667 0.00 0.00 0.00 4.44
2748 3383 5.185442 TGTGATGGTAGTGTTGTATCGGTTA 59.815 40.000 0.00 0.00 0.00 2.85
2749 3384 6.101332 GTGATGGTAGTGTTGTATCGGTTAA 58.899 40.000 0.00 0.00 0.00 2.01
2750 3385 6.759827 GTGATGGTAGTGTTGTATCGGTTAAT 59.240 38.462 0.00 0.00 0.00 1.40
2751 3386 6.982141 TGATGGTAGTGTTGTATCGGTTAATC 59.018 38.462 0.00 0.00 0.00 1.75
2752 3387 6.534475 TGGTAGTGTTGTATCGGTTAATCT 57.466 37.500 0.00 0.00 0.00 2.40
2753 3388 7.643569 TGGTAGTGTTGTATCGGTTAATCTA 57.356 36.000 0.00 0.00 0.00 1.98
2754 3389 8.065473 TGGTAGTGTTGTATCGGTTAATCTAA 57.935 34.615 0.00 0.00 0.00 2.10
2755 3390 8.698210 TGGTAGTGTTGTATCGGTTAATCTAAT 58.302 33.333 0.00 0.00 0.00 1.73
2756 3391 9.538508 GGTAGTGTTGTATCGGTTAATCTAATT 57.461 33.333 0.00 0.00 0.00 1.40
2759 3394 8.889717 AGTGTTGTATCGGTTAATCTAATTTGG 58.110 33.333 0.00 0.00 0.00 3.28
2760 3395 8.671028 GTGTTGTATCGGTTAATCTAATTTGGT 58.329 33.333 0.00 0.00 0.00 3.67
2761 3396 9.233649 TGTTGTATCGGTTAATCTAATTTGGTT 57.766 29.630 0.00 0.00 0.00 3.67
2778 3413 8.519492 AATTTGGTTATTTGTTTGATCTGTCG 57.481 30.769 0.00 0.00 0.00 4.35
2779 3414 5.621197 TGGTTATTTGTTTGATCTGTCGG 57.379 39.130 0.00 0.00 0.00 4.79
2780 3415 5.067273 TGGTTATTTGTTTGATCTGTCGGT 58.933 37.500 0.00 0.00 0.00 4.69
2781 3416 6.231951 TGGTTATTTGTTTGATCTGTCGGTA 58.768 36.000 0.00 0.00 0.00 4.02
2782 3417 6.882140 TGGTTATTTGTTTGATCTGTCGGTAT 59.118 34.615 0.00 0.00 0.00 2.73
2783 3418 8.041919 TGGTTATTTGTTTGATCTGTCGGTATA 58.958 33.333 0.00 0.00 0.00 1.47
2784 3419 8.548721 GGTTATTTGTTTGATCTGTCGGTATAG 58.451 37.037 0.00 0.00 0.00 1.31
2785 3420 9.095065 GTTATTTGTTTGATCTGTCGGTATAGT 57.905 33.333 0.00 0.00 0.00 2.12
2786 3421 9.661563 TTATTTGTTTGATCTGTCGGTATAGTT 57.338 29.630 0.00 0.00 0.00 2.24
2788 3423 9.832445 ATTTGTTTGATCTGTCGGTATAGTTAT 57.168 29.630 0.00 0.00 0.00 1.89
2790 3425 9.740239 TTGTTTGATCTGTCGGTATAGTTATAC 57.260 33.333 0.00 1.48 38.21 1.47
2791 3426 8.071967 TGTTTGATCTGTCGGTATAGTTATACG 58.928 37.037 0.00 0.00 39.48 3.06
2792 3427 6.732531 TGATCTGTCGGTATAGTTATACGG 57.267 41.667 9.39 9.39 39.48 4.02
2793 3428 6.466812 TGATCTGTCGGTATAGTTATACGGA 58.533 40.000 12.72 12.72 42.47 4.69
2800 3435 7.312657 TCGGTATAGTTATACGGACATCATC 57.687 40.000 12.72 0.00 40.95 2.92
2801 3436 6.880529 TCGGTATAGTTATACGGACATCATCA 59.119 38.462 12.72 0.00 40.95 3.07
2802 3437 7.065443 TCGGTATAGTTATACGGACATCATCAG 59.935 40.741 12.72 0.00 40.95 2.90
2803 3438 6.973474 GGTATAGTTATACGGACATCATCAGC 59.027 42.308 3.85 0.00 39.48 4.26
2804 3439 4.937201 AGTTATACGGACATCATCAGCA 57.063 40.909 0.00 0.00 0.00 4.41
2805 3440 4.876125 AGTTATACGGACATCATCAGCAG 58.124 43.478 0.00 0.00 0.00 4.24
2806 3441 2.160822 ATACGGACATCATCAGCAGC 57.839 50.000 0.00 0.00 0.00 5.25
2807 3442 0.823460 TACGGACATCATCAGCAGCA 59.177 50.000 0.00 0.00 0.00 4.41
2808 3443 0.742281 ACGGACATCATCAGCAGCAC 60.742 55.000 0.00 0.00 0.00 4.40
2809 3444 1.434622 CGGACATCATCAGCAGCACC 61.435 60.000 0.00 0.00 0.00 5.01
2810 3445 0.393402 GGACATCATCAGCAGCACCA 60.393 55.000 0.00 0.00 0.00 4.17
2811 3446 1.676746 GACATCATCAGCAGCACCAT 58.323 50.000 0.00 0.00 0.00 3.55
2812 3447 1.602851 GACATCATCAGCAGCACCATC 59.397 52.381 0.00 0.00 0.00 3.51
2813 3448 1.212195 ACATCATCAGCAGCACCATCT 59.788 47.619 0.00 0.00 0.00 2.90
2814 3449 2.298610 CATCATCAGCAGCACCATCTT 58.701 47.619 0.00 0.00 0.00 2.40
2815 3450 2.034104 TCATCAGCAGCACCATCTTC 57.966 50.000 0.00 0.00 0.00 2.87
2816 3451 1.558294 TCATCAGCAGCACCATCTTCT 59.442 47.619 0.00 0.00 0.00 2.85
2817 3452 2.026542 TCATCAGCAGCACCATCTTCTT 60.027 45.455 0.00 0.00 0.00 2.52
2818 3453 2.105006 TCAGCAGCACCATCTTCTTC 57.895 50.000 0.00 0.00 0.00 2.87
2819 3454 1.348696 TCAGCAGCACCATCTTCTTCA 59.651 47.619 0.00 0.00 0.00 3.02
2820 3455 2.156917 CAGCAGCACCATCTTCTTCAA 58.843 47.619 0.00 0.00 0.00 2.69
2821 3456 2.095364 CAGCAGCACCATCTTCTTCAAC 60.095 50.000 0.00 0.00 0.00 3.18
2822 3457 1.881973 GCAGCACCATCTTCTTCAACA 59.118 47.619 0.00 0.00 0.00 3.33
2823 3458 2.294233 GCAGCACCATCTTCTTCAACAA 59.706 45.455 0.00 0.00 0.00 2.83
2824 3459 3.854784 GCAGCACCATCTTCTTCAACAAC 60.855 47.826 0.00 0.00 0.00 3.32
2825 3460 2.549754 AGCACCATCTTCTTCAACAACG 59.450 45.455 0.00 0.00 0.00 4.10
2826 3461 2.918131 GCACCATCTTCTTCAACAACGC 60.918 50.000 0.00 0.00 0.00 4.84
2827 3462 1.880027 ACCATCTTCTTCAACAACGCC 59.120 47.619 0.00 0.00 0.00 5.68
2828 3463 2.154462 CCATCTTCTTCAACAACGCCT 58.846 47.619 0.00 0.00 0.00 5.52
2829 3464 2.554032 CCATCTTCTTCAACAACGCCTT 59.446 45.455 0.00 0.00 0.00 4.35
2830 3465 3.365364 CCATCTTCTTCAACAACGCCTTC 60.365 47.826 0.00 0.00 0.00 3.46
2831 3466 2.912771 TCTTCTTCAACAACGCCTTCA 58.087 42.857 0.00 0.00 0.00 3.02
2832 3467 3.476552 TCTTCTTCAACAACGCCTTCAT 58.523 40.909 0.00 0.00 0.00 2.57
2833 3468 3.882888 TCTTCTTCAACAACGCCTTCATT 59.117 39.130 0.00 0.00 0.00 2.57
2834 3469 4.338118 TCTTCTTCAACAACGCCTTCATTT 59.662 37.500 0.00 0.00 0.00 2.32
2835 3470 3.963665 TCTTCAACAACGCCTTCATTTG 58.036 40.909 0.00 0.00 0.00 2.32
2836 3471 3.629855 TCTTCAACAACGCCTTCATTTGA 59.370 39.130 0.00 0.00 0.00 2.69
2837 3472 3.624326 TCAACAACGCCTTCATTTGAG 57.376 42.857 0.00 0.00 0.00 3.02
2838 3473 2.948979 TCAACAACGCCTTCATTTGAGT 59.051 40.909 0.00 0.00 0.00 3.41
2839 3474 3.003275 TCAACAACGCCTTCATTTGAGTC 59.997 43.478 0.00 0.00 0.00 3.36
2840 3475 1.880027 ACAACGCCTTCATTTGAGTCC 59.120 47.619 0.00 0.00 0.00 3.85
2841 3476 2.154462 CAACGCCTTCATTTGAGTCCT 58.846 47.619 0.00 0.00 0.00 3.85
2842 3477 2.100605 ACGCCTTCATTTGAGTCCTC 57.899 50.000 0.00 0.00 0.00 3.71
2843 3478 1.347707 ACGCCTTCATTTGAGTCCTCA 59.652 47.619 0.00 0.00 37.91 3.86
2844 3479 1.734465 CGCCTTCATTTGAGTCCTCAC 59.266 52.381 0.00 0.00 39.66 3.51
2845 3480 2.783135 GCCTTCATTTGAGTCCTCACA 58.217 47.619 0.00 0.00 39.66 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.668353 GCTAGACATGACATTTCAAAATACTGA 58.332 33.333 0.00 0.00 34.61 3.41
228 230 4.574828 ACTGTCACAAACGTGCTATCTTTT 59.425 37.500 0.00 0.00 34.20 2.27
431 434 4.020573 ACCACTTCCACTTGTAATCATCGA 60.021 41.667 0.00 0.00 0.00 3.59
613 616 1.726853 GAGTCCAATGACGAACCCTG 58.273 55.000 0.00 0.00 46.51 4.45
626 629 3.154710 TCTTTTAGCACTCTCGAGTCCA 58.845 45.455 13.13 0.00 40.20 4.02
661 664 3.173599 CAACAAATGCATCTTCGCGATT 58.826 40.909 10.88 0.00 33.35 3.34
813 816 5.250774 ACCATCACCAAGATAGTACTTTGGT 59.749 40.000 20.21 20.21 34.43 3.67
814 817 5.586243 CACCATCACCAAGATAGTACTTTGG 59.414 44.000 19.10 19.10 34.43 3.28
816 819 5.186198 GCACCATCACCAAGATAGTACTTT 58.814 41.667 0.00 0.00 34.43 2.66
818 821 3.134804 GGCACCATCACCAAGATAGTACT 59.865 47.826 0.00 0.00 34.43 2.73
821 1373 2.717639 GGCACCATCACCAAGATAGT 57.282 50.000 0.00 0.00 34.43 2.12
865 1417 1.031235 CACACAAGGCACCATCACAA 58.969 50.000 0.00 0.00 0.00 3.33
1184 1741 7.723616 TGATTCTTCCTGTTATGTTTTCCTTCA 59.276 33.333 0.00 0.00 0.00 3.02
1972 2552 8.970859 AAAACAACATGGACAATAATTTTGGA 57.029 26.923 0.00 0.00 0.00 3.53
2129 2764 8.715191 AGAAACTTTTGTACATGCATGAAAAA 57.285 26.923 32.75 27.39 0.00 1.94
2130 2765 9.979578 ATAGAAACTTTTGTACATGCATGAAAA 57.020 25.926 32.75 24.23 0.00 2.29
2282 2917 3.336391 TCCAAGATGGAAAGGAAATGGGA 59.664 43.478 0.00 0.00 45.00 4.37
2370 3005 4.319766 GGTCCATATGTCACGATTTGCATC 60.320 45.833 1.24 0.00 0.00 3.91
2371 3006 3.565482 GGTCCATATGTCACGATTTGCAT 59.435 43.478 1.24 0.00 0.00 3.96
2372 3007 2.942376 GGTCCATATGTCACGATTTGCA 59.058 45.455 1.24 0.00 0.00 4.08
2373 3008 2.290641 GGGTCCATATGTCACGATTTGC 59.709 50.000 1.24 0.00 0.00 3.68
2374 3009 3.540617 TGGGTCCATATGTCACGATTTG 58.459 45.455 1.24 0.00 0.00 2.32
2375 3010 3.924114 TGGGTCCATATGTCACGATTT 57.076 42.857 1.24 0.00 0.00 2.17
2376 3011 3.924114 TTGGGTCCATATGTCACGATT 57.076 42.857 1.24 0.00 0.00 3.34
2377 3012 3.496692 CCATTGGGTCCATATGTCACGAT 60.497 47.826 1.24 0.00 0.00 3.73
2378 3013 2.158827 CCATTGGGTCCATATGTCACGA 60.159 50.000 1.24 0.00 0.00 4.35
2379 3014 2.221169 CCATTGGGTCCATATGTCACG 58.779 52.381 1.24 0.00 0.00 4.35
2380 3015 2.174639 TCCCATTGGGTCCATATGTCAC 59.825 50.000 21.31 0.00 44.74 3.67
2381 3016 2.442878 CTCCCATTGGGTCCATATGTCA 59.557 50.000 21.31 0.00 44.74 3.58
2382 3017 2.711009 TCTCCCATTGGGTCCATATGTC 59.289 50.000 21.31 0.00 44.74 3.06
2383 3018 2.713167 CTCTCCCATTGGGTCCATATGT 59.287 50.000 21.31 0.00 44.74 2.29
2384 3019 2.713167 ACTCTCCCATTGGGTCCATATG 59.287 50.000 21.31 8.42 44.74 1.78
2385 3020 2.713167 CACTCTCCCATTGGGTCCATAT 59.287 50.000 21.31 1.29 44.74 1.78
2386 3021 2.126882 CACTCTCCCATTGGGTCCATA 58.873 52.381 21.31 0.54 44.74 2.74
2387 3022 0.921896 CACTCTCCCATTGGGTCCAT 59.078 55.000 21.31 3.75 44.74 3.41
2388 3023 0.178876 TCACTCTCCCATTGGGTCCA 60.179 55.000 21.31 1.33 44.74 4.02
2389 3024 1.216990 ATCACTCTCCCATTGGGTCC 58.783 55.000 21.31 0.00 44.74 4.46
2390 3025 4.103153 TCAATATCACTCTCCCATTGGGTC 59.897 45.833 21.31 0.00 44.74 4.46
2391 3026 4.047166 TCAATATCACTCTCCCATTGGGT 58.953 43.478 21.31 2.81 44.74 4.51
2392 3027 4.103785 ACTCAATATCACTCTCCCATTGGG 59.896 45.833 16.26 16.26 46.11 4.12
2393 3028 5.301835 ACTCAATATCACTCTCCCATTGG 57.698 43.478 0.00 0.00 0.00 3.16
2394 3029 6.118170 ACAACTCAATATCACTCTCCCATTG 58.882 40.000 0.00 0.00 0.00 2.82
2395 3030 6.319048 ACAACTCAATATCACTCTCCCATT 57.681 37.500 0.00 0.00 0.00 3.16
2396 3031 5.965033 ACAACTCAATATCACTCTCCCAT 57.035 39.130 0.00 0.00 0.00 4.00
2397 3032 5.762179 AACAACTCAATATCACTCTCCCA 57.238 39.130 0.00 0.00 0.00 4.37
2398 3033 8.616076 CAATAAACAACTCAATATCACTCTCCC 58.384 37.037 0.00 0.00 0.00 4.30
2399 3034 9.167311 ACAATAAACAACTCAATATCACTCTCC 57.833 33.333 0.00 0.00 0.00 3.71
2424 3059 9.959775 CGAGATCAAGTTAACTATCTCAAAAAC 57.040 33.333 30.25 15.19 42.89 2.43
2425 3060 9.151471 CCGAGATCAAGTTAACTATCTCAAAAA 57.849 33.333 30.25 7.01 42.89 1.94
2426 3061 7.764443 CCCGAGATCAAGTTAACTATCTCAAAA 59.236 37.037 30.25 8.17 42.89 2.44
2427 3062 7.265673 CCCGAGATCAAGTTAACTATCTCAAA 58.734 38.462 30.25 8.95 42.89 2.69
2428 3063 6.683110 GCCCGAGATCAAGTTAACTATCTCAA 60.683 42.308 30.25 10.00 42.89 3.02
2429 3064 5.221263 GCCCGAGATCAAGTTAACTATCTCA 60.221 44.000 30.25 10.21 42.89 3.27
2430 3065 5.224135 GCCCGAGATCAAGTTAACTATCTC 58.776 45.833 25.69 25.69 40.52 2.75
2431 3066 4.039366 GGCCCGAGATCAAGTTAACTATCT 59.961 45.833 17.19 17.19 0.00 1.98
2432 3067 4.202223 TGGCCCGAGATCAAGTTAACTATC 60.202 45.833 8.92 9.27 0.00 2.08
2433 3068 3.709653 TGGCCCGAGATCAAGTTAACTAT 59.290 43.478 8.92 0.00 0.00 2.12
2434 3069 3.101437 TGGCCCGAGATCAAGTTAACTA 58.899 45.455 8.92 0.00 0.00 2.24
2435 3070 1.906574 TGGCCCGAGATCAAGTTAACT 59.093 47.619 1.12 1.12 0.00 2.24
2436 3071 2.396590 TGGCCCGAGATCAAGTTAAC 57.603 50.000 0.00 0.00 0.00 2.01
2437 3072 2.238646 ACATGGCCCGAGATCAAGTTAA 59.761 45.455 0.00 0.00 0.00 2.01
2438 3073 1.837439 ACATGGCCCGAGATCAAGTTA 59.163 47.619 0.00 0.00 0.00 2.24
2439 3074 0.620556 ACATGGCCCGAGATCAAGTT 59.379 50.000 0.00 0.00 0.00 2.66
2440 3075 0.179000 GACATGGCCCGAGATCAAGT 59.821 55.000 0.00 0.00 0.00 3.16
2441 3076 0.877649 CGACATGGCCCGAGATCAAG 60.878 60.000 0.00 0.00 0.00 3.02
2442 3077 1.143838 CGACATGGCCCGAGATCAA 59.856 57.895 0.00 0.00 0.00 2.57
2443 3078 2.016393 GACGACATGGCCCGAGATCA 62.016 60.000 0.00 0.00 0.00 2.92
2444 3079 1.300233 GACGACATGGCCCGAGATC 60.300 63.158 0.00 0.00 0.00 2.75
2445 3080 2.815308 GACGACATGGCCCGAGAT 59.185 61.111 0.00 0.00 0.00 2.75
2446 3081 3.822192 CGACGACATGGCCCGAGA 61.822 66.667 0.00 0.00 0.00 4.04
2450 3085 3.576356 CATGCGACGACATGGCCC 61.576 66.667 18.52 0.00 43.05 5.80
2455 3090 0.532573 AGAAGGACATGCGACGACAT 59.467 50.000 0.00 0.00 0.00 3.06
2456 3091 0.109272 GAGAAGGACATGCGACGACA 60.109 55.000 0.00 0.00 0.00 4.35
2457 3092 0.109272 TGAGAAGGACATGCGACGAC 60.109 55.000 0.00 0.00 0.00 4.34
2458 3093 0.817654 ATGAGAAGGACATGCGACGA 59.182 50.000 0.00 0.00 0.00 4.20
2459 3094 1.645034 AATGAGAAGGACATGCGACG 58.355 50.000 0.00 0.00 0.00 5.12
2460 3095 5.741388 AAATAATGAGAAGGACATGCGAC 57.259 39.130 0.00 0.00 0.00 5.19
2461 3096 7.216494 TCATAAATAATGAGAAGGACATGCGA 58.784 34.615 0.00 0.00 39.77 5.10
2462 3097 7.425577 TCATAAATAATGAGAAGGACATGCG 57.574 36.000 0.00 0.00 39.77 4.73
2478 3113 8.352201 GCATTAACCAGCACTTGATCATAAATA 58.648 33.333 0.00 0.00 0.00 1.40
2479 3114 7.205297 GCATTAACCAGCACTTGATCATAAAT 58.795 34.615 0.00 0.00 0.00 1.40
2480 3115 6.405731 GGCATTAACCAGCACTTGATCATAAA 60.406 38.462 0.00 0.00 0.00 1.40
2481 3116 5.067674 GGCATTAACCAGCACTTGATCATAA 59.932 40.000 0.00 0.00 0.00 1.90
2482 3117 4.580167 GGCATTAACCAGCACTTGATCATA 59.420 41.667 0.00 0.00 0.00 2.15
2483 3118 3.382546 GGCATTAACCAGCACTTGATCAT 59.617 43.478 0.00 0.00 0.00 2.45
2484 3119 2.754552 GGCATTAACCAGCACTTGATCA 59.245 45.455 0.00 0.00 0.00 2.92
2485 3120 2.754552 TGGCATTAACCAGCACTTGATC 59.245 45.455 0.00 0.00 33.75 2.92
2486 3121 2.806434 TGGCATTAACCAGCACTTGAT 58.194 42.857 0.00 0.00 33.75 2.57
2487 3122 2.284754 TGGCATTAACCAGCACTTGA 57.715 45.000 0.00 0.00 33.75 3.02
2488 3123 3.056678 TCATTGGCATTAACCAGCACTTG 60.057 43.478 0.00 0.00 41.82 3.16
2489 3124 3.164268 TCATTGGCATTAACCAGCACTT 58.836 40.909 0.00 0.00 41.82 3.16
2490 3125 2.756760 CTCATTGGCATTAACCAGCACT 59.243 45.455 0.00 0.00 41.82 4.40
2491 3126 2.754552 TCTCATTGGCATTAACCAGCAC 59.245 45.455 0.00 0.00 41.82 4.40
2492 3127 3.084536 TCTCATTGGCATTAACCAGCA 57.915 42.857 0.00 0.00 41.82 4.41
2493 3128 3.243636 CCATCTCATTGGCATTAACCAGC 60.244 47.826 0.00 0.00 41.82 4.85
2494 3129 3.956199 ACCATCTCATTGGCATTAACCAG 59.044 43.478 0.00 0.00 41.82 4.00
2495 3130 3.700539 CACCATCTCATTGGCATTAACCA 59.299 43.478 0.00 0.00 40.68 3.67
2496 3131 3.068590 CCACCATCTCATTGGCATTAACC 59.931 47.826 0.00 0.00 40.68 2.85
2497 3132 3.068590 CCCACCATCTCATTGGCATTAAC 59.931 47.826 0.00 0.00 40.68 2.01
2498 3133 3.298619 CCCACCATCTCATTGGCATTAA 58.701 45.455 0.00 0.00 40.68 1.40
2499 3134 2.424667 CCCCACCATCTCATTGGCATTA 60.425 50.000 0.00 0.00 40.68 1.90
2500 3135 1.690209 CCCCACCATCTCATTGGCATT 60.690 52.381 0.00 0.00 40.68 3.56
2501 3136 0.105862 CCCCACCATCTCATTGGCAT 60.106 55.000 0.00 0.00 40.68 4.40
2502 3137 1.307309 CCCCACCATCTCATTGGCA 59.693 57.895 0.00 0.00 40.68 4.92
2503 3138 0.753111 GACCCCACCATCTCATTGGC 60.753 60.000 0.00 0.00 40.68 4.52
2504 3139 0.106519 GGACCCCACCATCTCATTGG 60.107 60.000 0.00 0.00 42.82 3.16
2505 3140 0.625316 TGGACCCCACCATCTCATTG 59.375 55.000 0.00 0.00 34.77 2.82
2506 3141 1.612035 ATGGACCCCACCATCTCATT 58.388 50.000 0.00 0.00 46.24 2.57
2507 3142 2.512910 TATGGACCCCACCATCTCAT 57.487 50.000 0.00 0.00 46.24 2.90
2508 3143 2.089982 AGATATGGACCCCACCATCTCA 60.090 50.000 12.94 0.00 46.24 3.27
2509 3144 2.569404 GAGATATGGACCCCACCATCTC 59.431 54.545 16.87 16.87 46.24 2.75
2510 3145 2.089982 TGAGATATGGACCCCACCATCT 60.090 50.000 0.00 10.14 46.24 2.90
2511 3146 2.304180 CTGAGATATGGACCCCACCATC 59.696 54.545 0.00 0.00 46.24 3.51
2513 3148 1.009552 ACTGAGATATGGACCCCACCA 59.990 52.381 0.00 0.00 44.41 4.17
2514 3149 1.417890 CACTGAGATATGGACCCCACC 59.582 57.143 0.00 0.00 35.80 4.61
2515 3150 1.417890 CCACTGAGATATGGACCCCAC 59.582 57.143 0.00 0.00 38.34 4.61
2516 3151 1.009552 ACCACTGAGATATGGACCCCA 59.990 52.381 0.00 0.00 39.46 4.96
2517 3152 1.807814 ACCACTGAGATATGGACCCC 58.192 55.000 0.00 0.00 39.46 4.95
2518 3153 3.829601 CTCTACCACTGAGATATGGACCC 59.170 52.174 0.00 0.00 39.46 4.46
2519 3154 3.257127 GCTCTACCACTGAGATATGGACC 59.743 52.174 0.00 0.00 39.46 4.46
2520 3155 3.891977 TGCTCTACCACTGAGATATGGAC 59.108 47.826 0.00 0.00 39.46 4.02
2521 3156 4.184649 TGCTCTACCACTGAGATATGGA 57.815 45.455 0.00 0.00 39.46 3.41
2522 3157 5.480642 AATGCTCTACCACTGAGATATGG 57.519 43.478 0.00 0.00 42.13 2.74
2523 3158 6.423302 GTCAAATGCTCTACCACTGAGATATG 59.577 42.308 0.00 0.00 33.68 1.78
2524 3159 6.326064 AGTCAAATGCTCTACCACTGAGATAT 59.674 38.462 0.00 0.00 33.68 1.63
2525 3160 5.658634 AGTCAAATGCTCTACCACTGAGATA 59.341 40.000 0.00 0.00 33.68 1.98
2526 3161 4.469227 AGTCAAATGCTCTACCACTGAGAT 59.531 41.667 0.00 0.00 33.68 2.75
2527 3162 3.834813 AGTCAAATGCTCTACCACTGAGA 59.165 43.478 0.00 0.00 33.68 3.27
2528 3163 3.931468 CAGTCAAATGCTCTACCACTGAG 59.069 47.826 0.00 0.00 33.10 3.35
2529 3164 3.324846 ACAGTCAAATGCTCTACCACTGA 59.675 43.478 3.28 0.00 34.98 3.41
2530 3165 3.434641 CACAGTCAAATGCTCTACCACTG 59.565 47.826 0.00 0.00 36.63 3.66
2531 3166 3.668447 CACAGTCAAATGCTCTACCACT 58.332 45.455 0.00 0.00 0.00 4.00
2532 3167 2.160417 GCACAGTCAAATGCTCTACCAC 59.840 50.000 0.00 0.00 38.84 4.16
2533 3168 2.224499 TGCACAGTCAAATGCTCTACCA 60.224 45.455 0.00 0.00 42.55 3.25
2534 3169 2.426522 TGCACAGTCAAATGCTCTACC 58.573 47.619 0.00 0.00 42.55 3.18
2535 3170 3.686241 TGATGCACAGTCAAATGCTCTAC 59.314 43.478 0.00 0.00 42.55 2.59
2536 3171 3.941573 TGATGCACAGTCAAATGCTCTA 58.058 40.909 0.00 0.00 42.55 2.43
2537 3172 2.786777 TGATGCACAGTCAAATGCTCT 58.213 42.857 0.00 0.00 42.55 4.09
2538 3173 3.189910 TCTTGATGCACAGTCAAATGCTC 59.810 43.478 3.04 0.00 42.55 4.26
2539 3174 3.151554 TCTTGATGCACAGTCAAATGCT 58.848 40.909 3.04 0.00 42.55 3.79
2540 3175 3.499048 CTCTTGATGCACAGTCAAATGC 58.501 45.455 3.04 0.00 42.40 3.56
2541 3176 3.504906 ACCTCTTGATGCACAGTCAAATG 59.495 43.478 3.04 0.00 35.36 2.32
2542 3177 3.755378 GACCTCTTGATGCACAGTCAAAT 59.245 43.478 3.04 0.00 35.36 2.32
2543 3178 3.141398 GACCTCTTGATGCACAGTCAAA 58.859 45.455 3.04 0.00 35.36 2.69
2544 3179 2.104622 TGACCTCTTGATGCACAGTCAA 59.895 45.455 1.52 1.52 30.69 3.18
2545 3180 1.693606 TGACCTCTTGATGCACAGTCA 59.306 47.619 0.00 0.00 30.99 3.41
2546 3181 2.072298 GTGACCTCTTGATGCACAGTC 58.928 52.381 0.00 0.00 0.00 3.51
2547 3182 1.696336 AGTGACCTCTTGATGCACAGT 59.304 47.619 0.00 0.00 32.16 3.55
2548 3183 2.469274 AGTGACCTCTTGATGCACAG 57.531 50.000 0.00 0.00 32.16 3.66
2549 3184 2.899900 ACTAGTGACCTCTTGATGCACA 59.100 45.455 0.00 0.00 32.16 4.57
2550 3185 3.601443 ACTAGTGACCTCTTGATGCAC 57.399 47.619 0.00 0.00 0.00 4.57
2551 3186 4.040339 TCAAACTAGTGACCTCTTGATGCA 59.960 41.667 0.00 0.00 0.00 3.96
2552 3187 4.569943 TCAAACTAGTGACCTCTTGATGC 58.430 43.478 0.00 0.00 0.00 3.91
2553 3188 5.409826 GGTTCAAACTAGTGACCTCTTGATG 59.590 44.000 0.00 0.00 0.00 3.07
2554 3189 5.513267 GGGTTCAAACTAGTGACCTCTTGAT 60.513 44.000 14.11 0.00 0.00 2.57
2555 3190 4.202326 GGGTTCAAACTAGTGACCTCTTGA 60.202 45.833 14.11 8.87 0.00 3.02
2556 3191 4.065789 GGGTTCAAACTAGTGACCTCTTG 58.934 47.826 14.11 7.03 0.00 3.02
2557 3192 3.714798 TGGGTTCAAACTAGTGACCTCTT 59.285 43.478 14.11 0.00 0.00 2.85
2558 3193 3.314693 TGGGTTCAAACTAGTGACCTCT 58.685 45.455 14.11 0.00 0.00 3.69
2559 3194 3.071167 ACTGGGTTCAAACTAGTGACCTC 59.929 47.826 14.11 7.93 0.00 3.85
2560 3195 3.046374 ACTGGGTTCAAACTAGTGACCT 58.954 45.455 14.11 0.00 0.00 3.85
2561 3196 3.487120 ACTGGGTTCAAACTAGTGACC 57.513 47.619 0.00 2.84 0.00 4.02
2562 3197 3.564225 CCAACTGGGTTCAAACTAGTGAC 59.436 47.826 0.00 0.00 0.00 3.67
2563 3198 3.815809 CCAACTGGGTTCAAACTAGTGA 58.184 45.455 0.00 0.00 0.00 3.41
2577 3212 0.469892 AAACTTCAGGGCCCAACTGG 60.470 55.000 27.56 12.31 36.62 4.00
2578 3213 0.675633 CAAACTTCAGGGCCCAACTG 59.324 55.000 27.56 14.62 37.30 3.16
2579 3214 0.261696 ACAAACTTCAGGGCCCAACT 59.738 50.000 27.56 0.00 0.00 3.16
2580 3215 1.119684 AACAAACTTCAGGGCCCAAC 58.880 50.000 27.56 0.00 0.00 3.77
2581 3216 1.872773 AAACAAACTTCAGGGCCCAA 58.127 45.000 27.56 9.85 0.00 4.12
2582 3217 1.872773 AAAACAAACTTCAGGGCCCA 58.127 45.000 27.56 0.00 0.00 5.36
2583 3218 4.283467 AGATAAAAACAAACTTCAGGGCCC 59.717 41.667 16.46 16.46 0.00 5.80
2584 3219 5.243954 AGAGATAAAAACAAACTTCAGGGCC 59.756 40.000 0.00 0.00 0.00 5.80
2585 3220 6.207614 AGAGAGATAAAAACAAACTTCAGGGC 59.792 38.462 0.00 0.00 0.00 5.19
2586 3221 7.751768 AGAGAGATAAAAACAAACTTCAGGG 57.248 36.000 0.00 0.00 0.00 4.45
2617 3252 8.637986 TGGAGCAGTAAATTAAGTTTGACAATT 58.362 29.630 0.00 0.00 0.00 2.32
2618 3253 8.177119 TGGAGCAGTAAATTAAGTTTGACAAT 57.823 30.769 0.00 0.00 0.00 2.71
2619 3254 7.575414 TGGAGCAGTAAATTAAGTTTGACAA 57.425 32.000 0.00 0.00 0.00 3.18
2620 3255 7.759489 ATGGAGCAGTAAATTAAGTTTGACA 57.241 32.000 0.00 0.00 0.00 3.58
2648 3283 9.926158 AACATGTGTGCAATGAAGAAATAAATA 57.074 25.926 0.00 0.00 0.00 1.40
2649 3284 8.836268 AACATGTGTGCAATGAAGAAATAAAT 57.164 26.923 0.00 0.00 0.00 1.40
2650 3285 8.549548 CAAACATGTGTGCAATGAAGAAATAAA 58.450 29.630 2.32 0.00 0.00 1.40
2651 3286 7.710044 ACAAACATGTGTGCAATGAAGAAATAA 59.290 29.630 16.26 0.00 0.00 1.40
2652 3287 7.208777 ACAAACATGTGTGCAATGAAGAAATA 58.791 30.769 16.26 0.00 0.00 1.40
2653 3288 6.050432 ACAAACATGTGTGCAATGAAGAAAT 58.950 32.000 16.26 0.00 0.00 2.17
2654 3289 5.417811 ACAAACATGTGTGCAATGAAGAAA 58.582 33.333 16.26 0.00 0.00 2.52
2655 3290 5.008619 ACAAACATGTGTGCAATGAAGAA 57.991 34.783 16.26 0.00 0.00 2.52
2656 3291 4.338964 AGACAAACATGTGTGCAATGAAGA 59.661 37.500 16.26 0.00 0.00 2.87
2657 3292 4.613944 AGACAAACATGTGTGCAATGAAG 58.386 39.130 16.26 0.00 0.00 3.02
2658 3293 4.652421 AGACAAACATGTGTGCAATGAA 57.348 36.364 16.26 0.00 0.00 2.57
2659 3294 4.142204 ACAAGACAAACATGTGTGCAATGA 60.142 37.500 16.26 0.00 0.00 2.57
2660 3295 4.114073 ACAAGACAAACATGTGTGCAATG 58.886 39.130 16.26 13.62 0.00 2.82
2661 3296 4.389890 ACAAGACAAACATGTGTGCAAT 57.610 36.364 16.26 0.00 0.00 3.56
2662 3297 3.865011 ACAAGACAAACATGTGTGCAA 57.135 38.095 16.26 0.00 0.00 4.08
2663 3298 5.512753 AATACAAGACAAACATGTGTGCA 57.487 34.783 16.26 0.00 32.58 4.57
2664 3299 8.023128 AGATTAATACAAGACAAACATGTGTGC 58.977 33.333 16.26 8.91 32.58 4.57
2665 3300 9.333497 CAGATTAATACAAGACAAACATGTGTG 57.667 33.333 14.75 14.75 32.58 3.82
2666 3301 9.066892 ACAGATTAATACAAGACAAACATGTGT 57.933 29.630 0.00 0.00 32.58 3.72
2667 3302 9.897744 AACAGATTAATACAAGACAAACATGTG 57.102 29.630 0.00 0.00 32.58 3.21
2668 3303 9.897744 CAACAGATTAATACAAGACAAACATGT 57.102 29.630 0.00 0.00 34.72 3.21
2669 3304 9.897744 ACAACAGATTAATACAAGACAAACATG 57.102 29.630 0.00 0.00 0.00 3.21
2670 3305 9.897744 CACAACAGATTAATACAAGACAAACAT 57.102 29.630 0.00 0.00 0.00 2.71
2671 3306 8.898761 ACACAACAGATTAATACAAGACAAACA 58.101 29.630 0.00 0.00 0.00 2.83
2675 3310 9.549078 TGTTACACAACAGATTAATACAAGACA 57.451 29.630 0.00 0.00 39.75 3.41
2690 3325 2.983907 TCGGAACCTGTTACACAACA 57.016 45.000 0.00 0.00 42.39 3.33
2691 3326 3.135994 ACATCGGAACCTGTTACACAAC 58.864 45.455 0.00 0.00 35.06 3.32
2692 3327 3.070446 AGACATCGGAACCTGTTACACAA 59.930 43.478 0.00 0.00 0.00 3.33
2693 3328 2.631062 AGACATCGGAACCTGTTACACA 59.369 45.455 0.00 0.00 0.00 3.72
2694 3329 3.251571 GAGACATCGGAACCTGTTACAC 58.748 50.000 0.00 0.00 0.00 2.90
2695 3330 2.094906 CGAGACATCGGAACCTGTTACA 60.095 50.000 0.00 0.00 45.39 2.41
2696 3331 2.527100 CGAGACATCGGAACCTGTTAC 58.473 52.381 0.00 0.00 45.39 2.50
2697 3332 2.933495 CGAGACATCGGAACCTGTTA 57.067 50.000 0.00 0.00 45.39 2.41
2698 3333 3.814577 CGAGACATCGGAACCTGTT 57.185 52.632 0.00 0.00 45.39 3.16
2708 3343 1.738099 ACAGCCGCAACGAGACATC 60.738 57.895 0.00 0.00 0.00 3.06
2709 3344 2.029288 CACAGCCGCAACGAGACAT 61.029 57.895 0.00 0.00 0.00 3.06
2710 3345 2.434658 ATCACAGCCGCAACGAGACA 62.435 55.000 0.00 0.00 0.00 3.41
2711 3346 1.738099 ATCACAGCCGCAACGAGAC 60.738 57.895 0.00 0.00 0.00 3.36
2712 3347 1.737735 CATCACAGCCGCAACGAGA 60.738 57.895 0.00 0.00 0.00 4.04
2713 3348 2.743752 CCATCACAGCCGCAACGAG 61.744 63.158 0.00 0.00 0.00 4.18
2714 3349 2.161078 TACCATCACAGCCGCAACGA 62.161 55.000 0.00 0.00 0.00 3.85
2715 3350 1.695893 CTACCATCACAGCCGCAACG 61.696 60.000 0.00 0.00 0.00 4.10
2716 3351 0.673644 ACTACCATCACAGCCGCAAC 60.674 55.000 0.00 0.00 0.00 4.17
2717 3352 0.673333 CACTACCATCACAGCCGCAA 60.673 55.000 0.00 0.00 0.00 4.85
2718 3353 1.079197 CACTACCATCACAGCCGCA 60.079 57.895 0.00 0.00 0.00 5.69
2719 3354 0.673644 AACACTACCATCACAGCCGC 60.674 55.000 0.00 0.00 0.00 6.53
2720 3355 1.078709 CAACACTACCATCACAGCCG 58.921 55.000 0.00 0.00 0.00 5.52
2721 3356 2.185004 ACAACACTACCATCACAGCC 57.815 50.000 0.00 0.00 0.00 4.85
2722 3357 3.551890 CGATACAACACTACCATCACAGC 59.448 47.826 0.00 0.00 0.00 4.40
2723 3358 4.112634 CCGATACAACACTACCATCACAG 58.887 47.826 0.00 0.00 0.00 3.66
2724 3359 3.512329 ACCGATACAACACTACCATCACA 59.488 43.478 0.00 0.00 0.00 3.58
2725 3360 4.119442 ACCGATACAACACTACCATCAC 57.881 45.455 0.00 0.00 0.00 3.06
2726 3361 4.811969 AACCGATACAACACTACCATCA 57.188 40.909 0.00 0.00 0.00 3.07
2727 3362 7.208080 AGATTAACCGATACAACACTACCATC 58.792 38.462 0.00 0.00 0.00 3.51
2728 3363 7.120923 AGATTAACCGATACAACACTACCAT 57.879 36.000 0.00 0.00 0.00 3.55
2729 3364 6.534475 AGATTAACCGATACAACACTACCA 57.466 37.500 0.00 0.00 0.00 3.25
2730 3365 9.538508 AATTAGATTAACCGATACAACACTACC 57.461 33.333 0.00 0.00 0.00 3.18
2733 3368 8.889717 CCAAATTAGATTAACCGATACAACACT 58.110 33.333 0.00 0.00 0.00 3.55
2734 3369 8.671028 ACCAAATTAGATTAACCGATACAACAC 58.329 33.333 0.00 0.00 0.00 3.32
2735 3370 8.795842 ACCAAATTAGATTAACCGATACAACA 57.204 30.769 0.00 0.00 0.00 3.33
2752 3387 9.619316 CGACAGATCAAACAAATAACCAAATTA 57.381 29.630 0.00 0.00 0.00 1.40
2753 3388 7.598493 CCGACAGATCAAACAAATAACCAAATT 59.402 33.333 0.00 0.00 0.00 1.82
2754 3389 7.090173 CCGACAGATCAAACAAATAACCAAAT 58.910 34.615 0.00 0.00 0.00 2.32
2755 3390 6.039941 ACCGACAGATCAAACAAATAACCAAA 59.960 34.615 0.00 0.00 0.00 3.28
2756 3391 5.533154 ACCGACAGATCAAACAAATAACCAA 59.467 36.000 0.00 0.00 0.00 3.67
2757 3392 5.067273 ACCGACAGATCAAACAAATAACCA 58.933 37.500 0.00 0.00 0.00 3.67
2758 3393 5.622770 ACCGACAGATCAAACAAATAACC 57.377 39.130 0.00 0.00 0.00 2.85
2759 3394 9.095065 ACTATACCGACAGATCAAACAAATAAC 57.905 33.333 0.00 0.00 0.00 1.89
2760 3395 9.661563 AACTATACCGACAGATCAAACAAATAA 57.338 29.630 0.00 0.00 0.00 1.40
2762 3397 9.832445 ATAACTATACCGACAGATCAAACAAAT 57.168 29.630 0.00 0.00 0.00 2.32
2764 3399 9.740239 GTATAACTATACCGACAGATCAAACAA 57.260 33.333 0.00 0.00 33.99 2.83
2765 3400 8.071967 CGTATAACTATACCGACAGATCAAACA 58.928 37.037 0.00 0.00 36.13 2.83
2766 3401 7.536622 CCGTATAACTATACCGACAGATCAAAC 59.463 40.741 0.00 0.00 36.13 2.93
2767 3402 7.445096 TCCGTATAACTATACCGACAGATCAAA 59.555 37.037 0.00 0.00 36.13 2.69
2768 3403 6.936335 TCCGTATAACTATACCGACAGATCAA 59.064 38.462 0.00 0.00 36.13 2.57
2769 3404 6.369890 GTCCGTATAACTATACCGACAGATCA 59.630 42.308 16.74 0.00 42.10 2.92
2770 3405 6.369890 TGTCCGTATAACTATACCGACAGATC 59.630 42.308 18.83 0.00 44.53 2.75
2771 3406 6.233434 TGTCCGTATAACTATACCGACAGAT 58.767 40.000 18.83 0.00 44.53 2.90
2772 3407 5.610398 TGTCCGTATAACTATACCGACAGA 58.390 41.667 18.83 5.99 44.53 3.41
2773 3408 5.929697 TGTCCGTATAACTATACCGACAG 57.070 43.478 18.83 1.57 44.53 3.51
2775 3410 6.486253 TGATGTCCGTATAACTATACCGAC 57.514 41.667 15.62 15.62 42.46 4.79
2776 3411 6.880529 TGATGATGTCCGTATAACTATACCGA 59.119 38.462 2.09 0.00 36.13 4.69
2777 3412 7.080353 TGATGATGTCCGTATAACTATACCG 57.920 40.000 2.09 0.00 36.13 4.02
2778 3413 6.973474 GCTGATGATGTCCGTATAACTATACC 59.027 42.308 2.09 0.00 36.13 2.73
2779 3414 7.535997 TGCTGATGATGTCCGTATAACTATAC 58.464 38.462 0.00 0.00 36.15 1.47
2780 3415 7.628580 GCTGCTGATGATGTCCGTATAACTATA 60.629 40.741 0.00 0.00 0.00 1.31
2781 3416 6.590234 TGCTGATGATGTCCGTATAACTAT 57.410 37.500 0.00 0.00 0.00 2.12
2782 3417 5.564848 GCTGCTGATGATGTCCGTATAACTA 60.565 44.000 0.00 0.00 0.00 2.24
2783 3418 4.797604 GCTGCTGATGATGTCCGTATAACT 60.798 45.833 0.00 0.00 0.00 2.24
2784 3419 3.430218 GCTGCTGATGATGTCCGTATAAC 59.570 47.826 0.00 0.00 0.00 1.89
2785 3420 3.069443 TGCTGCTGATGATGTCCGTATAA 59.931 43.478 0.00 0.00 0.00 0.98
2786 3421 2.627699 TGCTGCTGATGATGTCCGTATA 59.372 45.455 0.00 0.00 0.00 1.47
2787 3422 1.413812 TGCTGCTGATGATGTCCGTAT 59.586 47.619 0.00 0.00 0.00 3.06
2788 3423 0.823460 TGCTGCTGATGATGTCCGTA 59.177 50.000 0.00 0.00 0.00 4.02
2789 3424 0.742281 GTGCTGCTGATGATGTCCGT 60.742 55.000 0.00 0.00 0.00 4.69
2790 3425 1.434622 GGTGCTGCTGATGATGTCCG 61.435 60.000 0.00 0.00 0.00 4.79
2791 3426 0.393402 TGGTGCTGCTGATGATGTCC 60.393 55.000 0.00 0.00 0.00 4.02
2792 3427 1.602851 GATGGTGCTGCTGATGATGTC 59.397 52.381 0.00 0.00 0.00 3.06
2793 3428 1.212195 AGATGGTGCTGCTGATGATGT 59.788 47.619 0.00 0.00 0.00 3.06
2794 3429 1.968704 AGATGGTGCTGCTGATGATG 58.031 50.000 0.00 0.00 0.00 3.07
2795 3430 2.172930 AGAAGATGGTGCTGCTGATGAT 59.827 45.455 0.00 0.00 0.00 2.45
2796 3431 1.558294 AGAAGATGGTGCTGCTGATGA 59.442 47.619 0.00 0.00 0.00 2.92
2797 3432 2.039818 AGAAGATGGTGCTGCTGATG 57.960 50.000 0.00 0.00 0.00 3.07
2798 3433 2.026542 TGAAGAAGATGGTGCTGCTGAT 60.027 45.455 0.00 0.00 0.00 2.90
2799 3434 1.348696 TGAAGAAGATGGTGCTGCTGA 59.651 47.619 0.00 0.00 0.00 4.26
2800 3435 1.817357 TGAAGAAGATGGTGCTGCTG 58.183 50.000 0.00 0.00 0.00 4.41
2801 3436 2.157738 GTTGAAGAAGATGGTGCTGCT 58.842 47.619 0.00 0.00 0.00 4.24
2802 3437 1.881973 TGTTGAAGAAGATGGTGCTGC 59.118 47.619 0.00 0.00 0.00 5.25
2803 3438 3.607775 CGTTGTTGAAGAAGATGGTGCTG 60.608 47.826 0.00 0.00 0.00 4.41
2804 3439 2.549754 CGTTGTTGAAGAAGATGGTGCT 59.450 45.455 0.00 0.00 0.00 4.40
2805 3440 2.918131 GCGTTGTTGAAGAAGATGGTGC 60.918 50.000 0.00 0.00 0.00 5.01
2806 3441 2.350772 GGCGTTGTTGAAGAAGATGGTG 60.351 50.000 0.00 0.00 0.00 4.17
2807 3442 1.880027 GGCGTTGTTGAAGAAGATGGT 59.120 47.619 0.00 0.00 0.00 3.55
2808 3443 2.154462 AGGCGTTGTTGAAGAAGATGG 58.846 47.619 0.00 0.00 0.00 3.51
2809 3444 3.250762 TGAAGGCGTTGTTGAAGAAGATG 59.749 43.478 0.00 0.00 0.00 2.90
2810 3445 3.476552 TGAAGGCGTTGTTGAAGAAGAT 58.523 40.909 0.00 0.00 0.00 2.40
2811 3446 2.912771 TGAAGGCGTTGTTGAAGAAGA 58.087 42.857 0.00 0.00 0.00 2.87
2812 3447 3.904136 ATGAAGGCGTTGTTGAAGAAG 57.096 42.857 0.00 0.00 0.00 2.85
2813 3448 4.097135 TCAAATGAAGGCGTTGTTGAAGAA 59.903 37.500 0.00 0.00 0.00 2.52
2814 3449 3.629855 TCAAATGAAGGCGTTGTTGAAGA 59.370 39.130 0.00 0.00 0.00 2.87
2815 3450 3.963665 TCAAATGAAGGCGTTGTTGAAG 58.036 40.909 0.00 0.00 0.00 3.02
2816 3451 3.380004 ACTCAAATGAAGGCGTTGTTGAA 59.620 39.130 0.00 0.00 0.00 2.69
2817 3452 2.948979 ACTCAAATGAAGGCGTTGTTGA 59.051 40.909 0.00 3.18 0.00 3.18
2818 3453 3.300009 GACTCAAATGAAGGCGTTGTTG 58.700 45.455 0.00 0.00 0.00 3.33
2819 3454 2.293399 GGACTCAAATGAAGGCGTTGTT 59.707 45.455 0.00 0.00 0.00 2.83
2820 3455 1.880027 GGACTCAAATGAAGGCGTTGT 59.120 47.619 0.00 0.00 0.00 3.32
2821 3456 2.154462 AGGACTCAAATGAAGGCGTTG 58.846 47.619 0.00 0.00 0.00 4.10
2822 3457 2.224523 TGAGGACTCAAATGAAGGCGTT 60.225 45.455 0.00 0.00 36.53 4.84
2823 3458 1.347707 TGAGGACTCAAATGAAGGCGT 59.652 47.619 0.00 0.00 36.53 5.68
2824 3459 1.734465 GTGAGGACTCAAATGAAGGCG 59.266 52.381 3.18 0.00 41.85 5.52
2825 3460 2.783135 TGTGAGGACTCAAATGAAGGC 58.217 47.619 3.18 0.00 41.85 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.