Multiple sequence alignment - TraesCS6B01G447700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G447700 chr6B 100.000 2255 0 0 964 3218 708046297 708048551 0.000000e+00 4165
1 TraesCS6B01G447700 chr6B 100.000 580 0 0 1 580 708045334 708045913 0.000000e+00 1072
2 TraesCS6B01G447700 chr6B 88.472 746 61 10 1501 2243 708035121 708035844 0.000000e+00 878
3 TraesCS6B01G447700 chr6B 96.838 253 8 0 1 253 412299218 412299470 1.070000e-114 424
4 TraesCS6B01G447700 chr6A 94.554 1414 55 14 975 2378 610929154 610930555 0.000000e+00 2165
5 TraesCS6B01G447700 chr6A 84.211 228 28 5 2390 2616 610931101 610931321 6.990000e-52 215
6 TraesCS6B01G447700 chr6A 95.604 91 2 2 490 578 610928963 610929053 9.300000e-31 145
7 TraesCS6B01G447700 chr6D 92.802 1417 66 18 974 2380 464343782 464345172 0.000000e+00 2019
8 TraesCS6B01G447700 chr6D 89.769 1212 100 11 968 2167 464296262 464297461 0.000000e+00 1530
9 TraesCS6B01G447700 chr6D 87.554 233 22 6 2388 2616 464345564 464345793 2.460000e-66 263
10 TraesCS6B01G447700 chr6D 95.455 66 0 3 490 553 464343594 464343658 5.680000e-18 102
11 TraesCS6B01G447700 chr4A 88.170 1361 120 17 969 2317 216438252 216436921 0.000000e+00 1583
12 TraesCS6B01G447700 chr4B 86.836 1337 129 19 991 2313 281603451 281604754 0.000000e+00 1450
13 TraesCS6B01G447700 chr4B 85.176 398 31 12 2824 3218 525454153 525454525 1.810000e-102 383
14 TraesCS6B01G447700 chr4B 83.127 403 39 19 2819 3218 525325476 525325100 1.110000e-89 340
15 TraesCS6B01G447700 chr5A 93.421 608 31 8 2616 3218 589365833 589365230 0.000000e+00 893
16 TraesCS6B01G447700 chr5A 85.306 245 23 11 2616 2853 32976649 32976411 1.150000e-59 241
17 TraesCS6B01G447700 chr1D 93.780 418 23 3 2803 3218 78366090 78366506 2.730000e-175 625
18 TraesCS6B01G447700 chr1D 95.708 233 10 0 2970 3202 420675222 420674990 3.030000e-100 375
19 TraesCS6B01G447700 chr2B 86.020 608 28 10 2616 3218 765087622 765087067 1.650000e-167 599
20 TraesCS6B01G447700 chr2D 93.516 401 23 3 2803 3202 207539943 207540341 7.690000e-166 593
21 TraesCS6B01G447700 chr2D 92.949 312 20 2 2831 3140 414968933 414968622 1.360000e-123 453
22 TraesCS6B01G447700 chr2D 90.909 242 17 4 2616 2854 607103411 607103650 1.440000e-83 320
23 TraesCS6B01G447700 chr2D 90.795 239 16 5 2616 2850 373374760 373374996 6.700000e-82 315
24 TraesCS6B01G447700 chr2A 91.422 408 29 6 2811 3217 575891805 575891403 3.630000e-154 555
25 TraesCS6B01G447700 chr2A 88.544 419 23 4 2803 3218 293894530 293894926 4.830000e-133 484
26 TraesCS6B01G447700 chr2A 95.210 167 8 0 1 167 671345131 671345297 6.850000e-67 265
27 TraesCS6B01G447700 chr2A 93.407 91 6 0 163 253 671382841 671382931 5.600000e-28 135
28 TraesCS6B01G447700 chr7B 89.663 416 38 5 2807 3218 164687946 164688360 2.840000e-145 525
29 TraesCS6B01G447700 chr3D 90.123 243 18 5 2616 2854 387347634 387347394 8.670000e-81 311
30 TraesCS6B01G447700 chr3D 89.121 239 20 5 2616 2850 597058372 597058608 3.140000e-75 292
31 TraesCS6B01G447700 chr4D 90.948 232 17 3 2625 2854 129520081 129519852 3.120000e-80 309
32 TraesCS6B01G447700 chr3A 83.740 246 28 11 2616 2854 336046581 336046341 4.180000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G447700 chr6B 708045334 708048551 3217 False 2618.500000 4165 100.000000 1 3218 2 chr6B.!!$F3 3217
1 TraesCS6B01G447700 chr6B 708035121 708035844 723 False 878.000000 878 88.472000 1501 2243 1 chr6B.!!$F2 742
2 TraesCS6B01G447700 chr6A 610928963 610931321 2358 False 841.666667 2165 91.456333 490 2616 3 chr6A.!!$F1 2126
3 TraesCS6B01G447700 chr6D 464296262 464297461 1199 False 1530.000000 1530 89.769000 968 2167 1 chr6D.!!$F1 1199
4 TraesCS6B01G447700 chr6D 464343594 464345793 2199 False 794.666667 2019 91.937000 490 2616 3 chr6D.!!$F2 2126
5 TraesCS6B01G447700 chr4A 216436921 216438252 1331 True 1583.000000 1583 88.170000 969 2317 1 chr4A.!!$R1 1348
6 TraesCS6B01G447700 chr4B 281603451 281604754 1303 False 1450.000000 1450 86.836000 991 2313 1 chr4B.!!$F1 1322
7 TraesCS6B01G447700 chr5A 589365230 589365833 603 True 893.000000 893 93.421000 2616 3218 1 chr5A.!!$R2 602
8 TraesCS6B01G447700 chr2B 765087067 765087622 555 True 599.000000 599 86.020000 2616 3218 1 chr2B.!!$R1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.034089 AGGATGCCACCTTTAGTGCC 60.034 55.0 0.0 0.0 45.83 5.01 F
346 347 0.034477 AATAAGTGGGGACAAGGGCG 60.034 55.0 0.0 0.0 46.06 6.13 F
474 475 0.034670 AGCCAGAGGAATCACAAGCC 60.035 55.0 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1884 0.443869 CGATCGGAAGCACCTTGTTG 59.556 55.000 7.38 0.0 36.31 3.33 R
1938 1973 1.379044 CACCCTGATGAACCTGGGC 60.379 63.158 0.00 0.0 45.92 5.36 R
2459 3032 0.596577 CGTCGGTGGAGACAAAGAGA 59.403 55.000 0.00 0.0 46.06 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.316640 AGTTAGCTTGAAAGTCTTGTTATCAG 57.683 34.615 0.00 0.00 0.00 2.90
27 28 7.934120 AGTTAGCTTGAAAGTCTTGTTATCAGT 59.066 33.333 0.00 0.00 0.00 3.41
28 29 6.551385 AGCTTGAAAGTCTTGTTATCAGTG 57.449 37.500 0.00 0.00 0.00 3.66
29 30 5.471456 AGCTTGAAAGTCTTGTTATCAGTGG 59.529 40.000 0.00 0.00 0.00 4.00
30 31 5.470098 GCTTGAAAGTCTTGTTATCAGTGGA 59.530 40.000 0.00 0.00 0.00 4.02
31 32 6.348050 GCTTGAAAGTCTTGTTATCAGTGGAG 60.348 42.308 0.00 0.00 0.00 3.86
32 33 6.174720 TGAAAGTCTTGTTATCAGTGGAGT 57.825 37.500 0.00 0.00 0.00 3.85
33 34 6.591935 TGAAAGTCTTGTTATCAGTGGAGTT 58.408 36.000 0.00 0.00 0.00 3.01
34 35 6.483307 TGAAAGTCTTGTTATCAGTGGAGTTG 59.517 38.462 0.00 0.00 0.00 3.16
35 36 5.552870 AGTCTTGTTATCAGTGGAGTTGT 57.447 39.130 0.00 0.00 0.00 3.32
36 37 5.930135 AGTCTTGTTATCAGTGGAGTTGTT 58.070 37.500 0.00 0.00 0.00 2.83
37 38 5.760253 AGTCTTGTTATCAGTGGAGTTGTTG 59.240 40.000 0.00 0.00 0.00 3.33
38 39 5.758296 GTCTTGTTATCAGTGGAGTTGTTGA 59.242 40.000 0.00 0.00 0.00 3.18
39 40 5.991606 TCTTGTTATCAGTGGAGTTGTTGAG 59.008 40.000 0.00 0.00 0.00 3.02
40 41 5.545063 TGTTATCAGTGGAGTTGTTGAGA 57.455 39.130 0.00 0.00 0.00 3.27
41 42 6.114187 TGTTATCAGTGGAGTTGTTGAGAT 57.886 37.500 0.00 0.00 0.00 2.75
42 43 6.533730 TGTTATCAGTGGAGTTGTTGAGATT 58.466 36.000 0.00 0.00 0.00 2.40
43 44 6.650807 TGTTATCAGTGGAGTTGTTGAGATTC 59.349 38.462 0.00 0.00 0.00 2.52
44 45 4.687901 TCAGTGGAGTTGTTGAGATTCA 57.312 40.909 0.00 0.00 0.00 2.57
45 46 4.380531 TCAGTGGAGTTGTTGAGATTCAC 58.619 43.478 0.00 0.00 0.00 3.18
46 47 4.129380 CAGTGGAGTTGTTGAGATTCACA 58.871 43.478 0.00 0.00 0.00 3.58
47 48 4.212847 CAGTGGAGTTGTTGAGATTCACAG 59.787 45.833 0.00 0.00 0.00 3.66
48 49 4.130118 GTGGAGTTGTTGAGATTCACAGT 58.870 43.478 0.00 0.00 0.00 3.55
49 50 4.212214 GTGGAGTTGTTGAGATTCACAGTC 59.788 45.833 0.00 0.00 0.00 3.51
50 51 3.430218 GGAGTTGTTGAGATTCACAGTCG 59.570 47.826 0.00 0.00 0.00 4.18
51 52 2.802816 AGTTGTTGAGATTCACAGTCGC 59.197 45.455 0.00 0.00 0.00 5.19
52 53 1.418373 TGTTGAGATTCACAGTCGCG 58.582 50.000 0.00 0.00 0.00 5.87
53 54 0.716108 GTTGAGATTCACAGTCGCGG 59.284 55.000 6.13 0.00 0.00 6.46
54 55 0.601057 TTGAGATTCACAGTCGCGGA 59.399 50.000 6.13 0.00 0.00 5.54
55 56 0.171231 TGAGATTCACAGTCGCGGAG 59.829 55.000 6.13 0.00 0.00 4.63
56 57 0.452184 GAGATTCACAGTCGCGGAGA 59.548 55.000 6.13 0.00 0.00 3.71
57 58 0.453793 AGATTCACAGTCGCGGAGAG 59.546 55.000 6.13 0.00 0.00 3.20
58 59 0.526524 GATTCACAGTCGCGGAGAGG 60.527 60.000 6.13 0.00 0.00 3.69
59 60 0.965866 ATTCACAGTCGCGGAGAGGA 60.966 55.000 6.13 0.00 0.00 3.71
60 61 1.176619 TTCACAGTCGCGGAGAGGAA 61.177 55.000 6.13 2.63 0.00 3.36
61 62 1.153939 CACAGTCGCGGAGAGGAAG 60.154 63.158 6.13 0.00 0.00 3.46
62 63 1.604023 ACAGTCGCGGAGAGGAAGT 60.604 57.895 6.13 0.00 0.00 3.01
63 64 0.322277 ACAGTCGCGGAGAGGAAGTA 60.322 55.000 6.13 0.00 0.00 2.24
64 65 0.099082 CAGTCGCGGAGAGGAAGTAC 59.901 60.000 6.13 0.00 0.00 2.73
65 66 1.062206 GTCGCGGAGAGGAAGTACG 59.938 63.158 6.13 0.00 0.00 3.67
66 67 2.278013 CGCGGAGAGGAAGTACGC 60.278 66.667 0.00 0.00 46.04 4.42
67 68 2.104530 GCGGAGAGGAAGTACGCC 59.895 66.667 0.00 0.04 44.01 5.68
68 69 2.806237 CGGAGAGGAAGTACGCCC 59.194 66.667 4.44 1.79 0.00 6.13
69 70 2.783288 CGGAGAGGAAGTACGCCCC 61.783 68.421 4.44 0.00 0.00 5.80
70 71 1.684734 GGAGAGGAAGTACGCCCCA 60.685 63.158 4.44 0.00 0.00 4.96
71 72 1.677637 GGAGAGGAAGTACGCCCCAG 61.678 65.000 4.44 0.00 0.00 4.45
72 73 0.971447 GAGAGGAAGTACGCCCCAGT 60.971 60.000 4.44 0.00 0.00 4.00
73 74 0.544595 AGAGGAAGTACGCCCCAGTT 60.545 55.000 4.44 0.00 0.00 3.16
74 75 0.323957 GAGGAAGTACGCCCCAGTTT 59.676 55.000 4.44 0.00 0.00 2.66
75 76 0.036306 AGGAAGTACGCCCCAGTTTG 59.964 55.000 4.44 0.00 0.00 2.93
76 77 0.250597 GGAAGTACGCCCCAGTTTGT 60.251 55.000 0.00 0.00 0.00 2.83
77 78 1.002315 GGAAGTACGCCCCAGTTTGTA 59.998 52.381 0.00 0.00 0.00 2.41
78 79 2.071540 GAAGTACGCCCCAGTTTGTAC 58.928 52.381 0.00 0.00 37.93 2.90
79 80 1.050204 AGTACGCCCCAGTTTGTACA 58.950 50.000 0.00 0.00 39.63 2.90
80 81 1.626825 AGTACGCCCCAGTTTGTACAT 59.373 47.619 0.00 0.00 39.63 2.29
81 82 2.039348 AGTACGCCCCAGTTTGTACATT 59.961 45.455 0.00 0.00 39.63 2.71
82 83 1.243902 ACGCCCCAGTTTGTACATTG 58.756 50.000 0.00 0.00 0.00 2.82
83 84 1.202830 ACGCCCCAGTTTGTACATTGA 60.203 47.619 0.00 0.00 0.00 2.57
84 85 1.199097 CGCCCCAGTTTGTACATTGAC 59.801 52.381 0.00 0.00 0.00 3.18
85 86 1.199097 GCCCCAGTTTGTACATTGACG 59.801 52.381 0.00 0.00 0.00 4.35
86 87 2.773487 CCCCAGTTTGTACATTGACGA 58.227 47.619 0.00 0.00 0.00 4.20
87 88 2.482721 CCCCAGTTTGTACATTGACGAC 59.517 50.000 0.00 0.00 0.00 4.34
88 89 2.156891 CCCAGTTTGTACATTGACGACG 59.843 50.000 0.00 0.00 0.00 5.12
89 90 2.156891 CCAGTTTGTACATTGACGACGG 59.843 50.000 0.00 0.00 0.00 4.79
90 91 2.798283 CAGTTTGTACATTGACGACGGT 59.202 45.455 0.00 0.00 0.00 4.83
91 92 3.982701 CAGTTTGTACATTGACGACGGTA 59.017 43.478 0.00 0.00 0.00 4.02
92 93 4.445052 CAGTTTGTACATTGACGACGGTAA 59.555 41.667 0.00 0.00 0.00 2.85
93 94 4.445385 AGTTTGTACATTGACGACGGTAAC 59.555 41.667 0.00 0.00 0.00 2.50
94 95 3.639716 TGTACATTGACGACGGTAACA 57.360 42.857 0.00 0.00 0.00 2.41
95 96 3.567530 TGTACATTGACGACGGTAACAG 58.432 45.455 0.00 0.00 0.00 3.16
96 97 1.425412 ACATTGACGACGGTAACAGC 58.575 50.000 0.00 0.00 0.00 4.40
97 98 1.000506 ACATTGACGACGGTAACAGCT 59.999 47.619 0.00 0.00 0.00 4.24
98 99 2.066262 CATTGACGACGGTAACAGCTT 58.934 47.619 0.00 0.00 0.00 3.74
99 100 1.774639 TTGACGACGGTAACAGCTTC 58.225 50.000 0.00 0.00 0.00 3.86
100 101 0.669619 TGACGACGGTAACAGCTTCA 59.330 50.000 0.00 0.00 0.00 3.02
101 102 1.271379 TGACGACGGTAACAGCTTCAT 59.729 47.619 0.00 0.00 0.00 2.57
102 103 2.288579 TGACGACGGTAACAGCTTCATT 60.289 45.455 0.00 0.00 0.00 2.57
103 104 2.066262 ACGACGGTAACAGCTTCATTG 58.934 47.619 0.00 0.00 0.00 2.82
104 105 2.066262 CGACGGTAACAGCTTCATTGT 58.934 47.619 0.00 0.00 0.00 2.71
105 106 2.092211 CGACGGTAACAGCTTCATTGTC 59.908 50.000 0.00 0.00 0.00 3.18
106 107 2.415512 GACGGTAACAGCTTCATTGTCC 59.584 50.000 0.00 0.00 0.00 4.02
107 108 1.737793 CGGTAACAGCTTCATTGTCCC 59.262 52.381 0.00 0.00 0.00 4.46
108 109 2.790433 GGTAACAGCTTCATTGTCCCA 58.210 47.619 0.00 0.00 0.00 4.37
109 110 3.356290 GGTAACAGCTTCATTGTCCCAT 58.644 45.455 0.00 0.00 0.00 4.00
110 111 4.523083 GGTAACAGCTTCATTGTCCCATA 58.477 43.478 0.00 0.00 0.00 2.74
111 112 4.947388 GGTAACAGCTTCATTGTCCCATAA 59.053 41.667 0.00 0.00 0.00 1.90
112 113 5.594317 GGTAACAGCTTCATTGTCCCATAAT 59.406 40.000 0.00 0.00 0.00 1.28
113 114 6.770785 GGTAACAGCTTCATTGTCCCATAATA 59.229 38.462 0.00 0.00 0.00 0.98
114 115 7.284489 GGTAACAGCTTCATTGTCCCATAATAA 59.716 37.037 0.00 0.00 0.00 1.40
115 116 6.699575 ACAGCTTCATTGTCCCATAATAAC 57.300 37.500 0.00 0.00 0.00 1.89
116 117 6.186957 ACAGCTTCATTGTCCCATAATAACA 58.813 36.000 0.00 0.00 0.00 2.41
117 118 6.319658 ACAGCTTCATTGTCCCATAATAACAG 59.680 38.462 0.00 0.00 0.00 3.16
118 119 5.829924 AGCTTCATTGTCCCATAATAACAGG 59.170 40.000 0.00 0.00 0.00 4.00
119 120 5.827797 GCTTCATTGTCCCATAATAACAGGA 59.172 40.000 0.00 0.00 0.00 3.86
120 121 6.491403 GCTTCATTGTCCCATAATAACAGGAT 59.509 38.462 0.00 0.00 0.00 3.24
121 122 7.522725 GCTTCATTGTCCCATAATAACAGGATG 60.523 40.741 0.00 0.00 46.00 3.51
122 123 5.769662 TCATTGTCCCATAATAACAGGATGC 59.230 40.000 0.00 0.00 42.53 3.91
123 124 4.098914 TGTCCCATAATAACAGGATGCC 57.901 45.455 0.00 0.00 42.53 4.40
124 125 3.461458 TGTCCCATAATAACAGGATGCCA 59.539 43.478 0.00 0.00 42.53 4.92
125 126 3.821033 GTCCCATAATAACAGGATGCCAC 59.179 47.826 0.00 0.00 42.53 5.01
126 127 3.157087 CCCATAATAACAGGATGCCACC 58.843 50.000 0.00 0.00 42.53 4.61
127 128 3.181429 CCCATAATAACAGGATGCCACCT 60.181 47.826 0.00 0.00 42.53 4.00
128 129 4.473444 CCATAATAACAGGATGCCACCTT 58.527 43.478 0.00 0.00 42.53 3.50
129 130 4.895297 CCATAATAACAGGATGCCACCTTT 59.105 41.667 0.00 0.00 42.53 3.11
130 131 6.068010 CCATAATAACAGGATGCCACCTTTA 58.932 40.000 0.00 1.40 42.53 1.85
131 132 6.207417 CCATAATAACAGGATGCCACCTTTAG 59.793 42.308 0.00 0.00 42.53 1.85
132 133 4.862641 ATAACAGGATGCCACCTTTAGT 57.137 40.909 0.00 0.00 42.53 2.24
133 134 2.496899 ACAGGATGCCACCTTTAGTG 57.503 50.000 0.00 0.00 42.53 2.74
134 135 1.098050 CAGGATGCCACCTTTAGTGC 58.902 55.000 0.00 0.00 45.83 4.40
135 136 0.034089 AGGATGCCACCTTTAGTGCC 60.034 55.000 0.00 0.00 45.83 5.01
136 137 0.323360 GGATGCCACCTTTAGTGCCA 60.323 55.000 0.00 0.00 45.83 4.92
137 138 1.686115 GGATGCCACCTTTAGTGCCAT 60.686 52.381 0.00 0.00 46.75 4.40
138 139 1.767759 ATGCCACCTTTAGTGCCATC 58.232 50.000 0.00 0.00 40.41 3.51
139 140 0.403655 TGCCACCTTTAGTGCCATCA 59.596 50.000 0.00 0.00 45.83 3.07
140 141 1.202989 TGCCACCTTTAGTGCCATCAA 60.203 47.619 0.00 0.00 45.83 2.57
141 142 1.202348 GCCACCTTTAGTGCCATCAAC 59.798 52.381 0.00 0.00 45.83 3.18
142 143 1.818674 CCACCTTTAGTGCCATCAACC 59.181 52.381 0.00 0.00 45.83 3.77
143 144 1.468520 CACCTTTAGTGCCATCAACCG 59.531 52.381 0.00 0.00 40.28 4.44
144 145 1.094785 CCTTTAGTGCCATCAACCGG 58.905 55.000 0.00 0.00 0.00 5.28
145 146 1.613255 CCTTTAGTGCCATCAACCGGT 60.613 52.381 0.00 0.00 0.00 5.28
146 147 1.737793 CTTTAGTGCCATCAACCGGTC 59.262 52.381 8.04 0.00 0.00 4.79
147 148 0.981183 TTAGTGCCATCAACCGGTCT 59.019 50.000 8.04 0.00 0.00 3.85
148 149 1.855295 TAGTGCCATCAACCGGTCTA 58.145 50.000 8.04 0.00 0.00 2.59
149 150 1.204146 AGTGCCATCAACCGGTCTAT 58.796 50.000 8.04 0.70 0.00 1.98
150 151 1.134401 AGTGCCATCAACCGGTCTATG 60.134 52.381 8.04 14.72 0.00 2.23
151 152 1.134521 GTGCCATCAACCGGTCTATGA 60.135 52.381 23.83 17.86 0.00 2.15
152 153 1.138859 TGCCATCAACCGGTCTATGAG 59.861 52.381 23.83 16.65 0.00 2.90
153 154 1.871080 CCATCAACCGGTCTATGAGC 58.129 55.000 23.83 0.00 0.00 4.26
154 155 1.138859 CCATCAACCGGTCTATGAGCA 59.861 52.381 23.83 0.00 0.00 4.26
155 156 2.419990 CCATCAACCGGTCTATGAGCAA 60.420 50.000 23.83 0.00 0.00 3.91
156 157 3.270027 CATCAACCGGTCTATGAGCAAA 58.730 45.455 19.52 0.00 0.00 3.68
157 158 2.972625 TCAACCGGTCTATGAGCAAAG 58.027 47.619 8.04 0.00 0.00 2.77
158 159 1.398390 CAACCGGTCTATGAGCAAAGC 59.602 52.381 8.04 0.00 0.00 3.51
159 160 0.905357 ACCGGTCTATGAGCAAAGCT 59.095 50.000 0.00 0.00 43.88 3.74
160 161 1.279271 ACCGGTCTATGAGCAAAGCTT 59.721 47.619 0.00 0.00 39.88 3.74
161 162 2.290323 ACCGGTCTATGAGCAAAGCTTT 60.290 45.455 5.69 5.69 39.88 3.51
162 163 2.749621 CCGGTCTATGAGCAAAGCTTTT 59.250 45.455 9.53 0.00 39.88 2.27
163 164 3.426695 CCGGTCTATGAGCAAAGCTTTTG 60.427 47.826 9.53 6.62 39.88 2.44
164 165 3.436704 CGGTCTATGAGCAAAGCTTTTGA 59.563 43.478 9.53 0.00 39.88 2.69
165 166 4.436584 CGGTCTATGAGCAAAGCTTTTGAG 60.437 45.833 9.53 0.00 39.88 3.02
166 167 4.142513 GGTCTATGAGCAAAGCTTTTGAGG 60.143 45.833 9.53 0.00 39.88 3.86
167 168 2.738013 ATGAGCAAAGCTTTTGAGGC 57.262 45.000 9.53 10.06 39.88 4.70
168 169 0.311790 TGAGCAAAGCTTTTGAGGCG 59.688 50.000 9.53 0.00 39.88 5.52
169 170 0.312102 GAGCAAAGCTTTTGAGGCGT 59.688 50.000 9.53 0.41 39.88 5.68
170 171 0.746659 AGCAAAGCTTTTGAGGCGTT 59.253 45.000 9.53 0.00 33.89 4.84
171 172 0.854705 GCAAAGCTTTTGAGGCGTTG 59.145 50.000 9.53 9.27 46.31 4.10
172 173 1.535860 GCAAAGCTTTTGAGGCGTTGA 60.536 47.619 9.53 0.00 46.42 3.18
173 174 2.119457 CAAAGCTTTTGAGGCGTTGAC 58.881 47.619 9.53 0.00 46.42 3.18
174 175 0.668535 AAGCTTTTGAGGCGTTGACC 59.331 50.000 0.00 0.00 34.52 4.02
175 176 1.082104 GCTTTTGAGGCGTTGACCG 60.082 57.895 0.00 0.00 40.40 4.79
184 185 4.924019 CGTTGACCGCCCAGATAA 57.076 55.556 0.00 0.00 0.00 1.75
185 186 2.677971 CGTTGACCGCCCAGATAAG 58.322 57.895 0.00 0.00 0.00 1.73
186 187 0.174845 CGTTGACCGCCCAGATAAGA 59.825 55.000 0.00 0.00 0.00 2.10
187 188 1.404986 CGTTGACCGCCCAGATAAGAA 60.405 52.381 0.00 0.00 0.00 2.52
188 189 2.280628 GTTGACCGCCCAGATAAGAAG 58.719 52.381 0.00 0.00 0.00 2.85
189 190 0.178068 TGACCGCCCAGATAAGAAGC 59.822 55.000 0.00 0.00 0.00 3.86
190 191 0.876342 GACCGCCCAGATAAGAAGCG 60.876 60.000 0.00 0.00 46.04 4.68
194 195 1.517242 GCCCAGATAAGAAGCGATGG 58.483 55.000 0.00 0.00 0.00 3.51
195 196 1.070758 GCCCAGATAAGAAGCGATGGA 59.929 52.381 0.00 0.00 0.00 3.41
196 197 2.760374 CCCAGATAAGAAGCGATGGAC 58.240 52.381 0.00 0.00 0.00 4.02
197 198 2.398498 CCAGATAAGAAGCGATGGACG 58.602 52.381 0.00 0.00 45.66 4.79
198 199 2.398498 CAGATAAGAAGCGATGGACGG 58.602 52.381 0.00 0.00 42.83 4.79
199 200 2.034685 CAGATAAGAAGCGATGGACGGA 59.965 50.000 0.00 0.00 42.83 4.69
200 201 2.894126 AGATAAGAAGCGATGGACGGAT 59.106 45.455 0.00 0.00 42.83 4.18
201 202 2.795175 TAAGAAGCGATGGACGGATC 57.205 50.000 0.00 0.00 42.83 3.36
202 203 0.824109 AAGAAGCGATGGACGGATCA 59.176 50.000 0.00 0.00 42.83 2.92
203 204 0.824109 AGAAGCGATGGACGGATCAA 59.176 50.000 0.00 0.00 42.83 2.57
204 205 1.414181 AGAAGCGATGGACGGATCAAT 59.586 47.619 0.00 0.00 42.83 2.57
205 206 1.528586 GAAGCGATGGACGGATCAATG 59.471 52.381 0.00 0.00 42.83 2.82
206 207 0.250038 AGCGATGGACGGATCAATGG 60.250 55.000 0.00 0.00 42.83 3.16
207 208 0.532862 GCGATGGACGGATCAATGGT 60.533 55.000 0.00 0.00 42.83 3.55
208 209 1.502231 CGATGGACGGATCAATGGTC 58.498 55.000 0.00 0.00 38.46 4.02
209 210 1.069204 CGATGGACGGATCAATGGTCT 59.931 52.381 0.00 0.00 38.46 3.85
210 211 2.487934 GATGGACGGATCAATGGTCTG 58.512 52.381 0.00 0.00 0.00 3.51
211 212 0.107703 TGGACGGATCAATGGTCTGC 60.108 55.000 1.56 0.00 0.00 4.26
212 213 0.107703 GGACGGATCAATGGTCTGCA 60.108 55.000 1.56 0.00 0.00 4.41
213 214 1.678728 GGACGGATCAATGGTCTGCAA 60.679 52.381 1.56 0.00 0.00 4.08
214 215 1.398390 GACGGATCAATGGTCTGCAAC 59.602 52.381 1.56 0.00 0.00 4.17
215 216 1.003580 ACGGATCAATGGTCTGCAACT 59.996 47.619 1.56 0.00 0.00 3.16
216 217 2.086869 CGGATCAATGGTCTGCAACTT 58.913 47.619 0.00 0.00 0.00 2.66
217 218 2.096496 CGGATCAATGGTCTGCAACTTC 59.904 50.000 0.00 0.00 0.00 3.01
218 219 2.096496 GGATCAATGGTCTGCAACTTCG 59.904 50.000 0.00 0.00 0.00 3.79
219 220 2.542020 TCAATGGTCTGCAACTTCGA 57.458 45.000 0.00 0.00 0.00 3.71
220 221 3.057969 TCAATGGTCTGCAACTTCGAT 57.942 42.857 0.00 0.00 0.00 3.59
221 222 3.411446 TCAATGGTCTGCAACTTCGATT 58.589 40.909 0.00 0.00 0.00 3.34
222 223 3.436704 TCAATGGTCTGCAACTTCGATTC 59.563 43.478 0.00 0.00 0.00 2.52
223 224 2.839486 TGGTCTGCAACTTCGATTCT 57.161 45.000 0.00 0.00 0.00 2.40
224 225 3.126001 TGGTCTGCAACTTCGATTCTT 57.874 42.857 0.00 0.00 0.00 2.52
225 226 2.807967 TGGTCTGCAACTTCGATTCTTG 59.192 45.455 0.00 0.00 0.00 3.02
226 227 2.160417 GGTCTGCAACTTCGATTCTTGG 59.840 50.000 0.00 0.00 0.00 3.61
227 228 3.067106 GTCTGCAACTTCGATTCTTGGA 58.933 45.455 0.00 0.00 0.00 3.53
228 229 3.686726 GTCTGCAACTTCGATTCTTGGAT 59.313 43.478 0.00 0.00 0.00 3.41
229 230 3.686241 TCTGCAACTTCGATTCTTGGATG 59.314 43.478 0.00 0.00 0.00 3.51
230 231 2.162208 TGCAACTTCGATTCTTGGATGC 59.838 45.455 0.00 0.00 0.00 3.91
231 232 2.162208 GCAACTTCGATTCTTGGATGCA 59.838 45.455 0.00 0.00 0.00 3.96
232 233 3.366273 GCAACTTCGATTCTTGGATGCAA 60.366 43.478 0.00 0.00 0.00 4.08
233 234 4.797471 CAACTTCGATTCTTGGATGCAAA 58.203 39.130 0.00 0.00 0.00 3.68
234 235 4.425577 ACTTCGATTCTTGGATGCAAAC 57.574 40.909 0.00 0.00 0.00 2.93
235 236 3.191371 ACTTCGATTCTTGGATGCAAACC 59.809 43.478 0.00 6.38 0.00 3.27
236 237 2.789213 TCGATTCTTGGATGCAAACCA 58.211 42.857 11.19 11.19 36.78 3.67
237 238 2.749076 TCGATTCTTGGATGCAAACCAG 59.251 45.455 14.08 9.85 41.06 4.00
238 239 2.749076 CGATTCTTGGATGCAAACCAGA 59.251 45.455 14.08 11.50 41.06 3.86
239 240 3.379372 CGATTCTTGGATGCAAACCAGAT 59.621 43.478 14.08 10.58 41.06 2.90
240 241 4.142315 CGATTCTTGGATGCAAACCAGATT 60.142 41.667 14.08 10.70 41.06 2.40
241 242 5.066375 CGATTCTTGGATGCAAACCAGATTA 59.934 40.000 14.08 1.87 41.06 1.75
242 243 5.643379 TTCTTGGATGCAAACCAGATTAC 57.357 39.130 14.08 0.00 41.06 1.89
243 244 4.661222 TCTTGGATGCAAACCAGATTACA 58.339 39.130 14.08 0.97 41.06 2.41
244 245 4.701651 TCTTGGATGCAAACCAGATTACAG 59.298 41.667 14.08 9.15 41.06 2.74
245 246 3.355378 TGGATGCAAACCAGATTACAGG 58.645 45.455 11.19 0.00 31.77 4.00
246 247 3.010027 TGGATGCAAACCAGATTACAGGA 59.990 43.478 11.19 0.00 31.77 3.86
247 248 3.629398 GGATGCAAACCAGATTACAGGAG 59.371 47.826 8.18 0.00 0.00 3.69
248 249 3.071874 TGCAAACCAGATTACAGGAGG 57.928 47.619 0.00 0.00 0.00 4.30
249 250 2.642311 TGCAAACCAGATTACAGGAGGA 59.358 45.455 0.00 0.00 0.00 3.71
250 251 3.266772 TGCAAACCAGATTACAGGAGGAT 59.733 43.478 0.00 0.00 0.00 3.24
251 252 3.629398 GCAAACCAGATTACAGGAGGATG 59.371 47.826 0.00 0.00 0.00 3.51
252 253 4.848357 CAAACCAGATTACAGGAGGATGT 58.152 43.478 0.00 0.00 37.19 3.06
253 254 5.256474 CAAACCAGATTACAGGAGGATGTT 58.744 41.667 0.00 0.00 34.56 2.71
254 255 4.494091 ACCAGATTACAGGAGGATGTTG 57.506 45.455 0.00 0.00 34.56 3.33
255 256 3.209410 CCAGATTACAGGAGGATGTTGC 58.791 50.000 0.00 0.00 34.56 4.17
256 257 3.209410 CAGATTACAGGAGGATGTTGCC 58.791 50.000 0.00 0.00 34.56 4.52
257 258 2.173569 AGATTACAGGAGGATGTTGCCC 59.826 50.000 0.00 0.00 34.56 5.36
258 259 1.367346 TTACAGGAGGATGTTGCCCA 58.633 50.000 0.00 0.00 34.56 5.36
259 260 1.595311 TACAGGAGGATGTTGCCCAT 58.405 50.000 0.00 0.00 34.56 4.00
260 261 0.706433 ACAGGAGGATGTTGCCCATT 59.294 50.000 0.00 0.00 32.56 3.16
261 262 1.341383 ACAGGAGGATGTTGCCCATTC 60.341 52.381 0.00 0.00 32.56 2.67
262 263 1.064166 CAGGAGGATGTTGCCCATTCT 60.064 52.381 0.00 0.00 42.48 2.40
263 264 2.173356 CAGGAGGATGTTGCCCATTCTA 59.827 50.000 0.00 0.00 39.67 2.10
264 265 2.441001 AGGAGGATGTTGCCCATTCTAG 59.559 50.000 0.00 0.00 39.67 2.43
265 266 2.225467 GAGGATGTTGCCCATTCTAGC 58.775 52.381 0.00 0.00 39.67 3.42
266 267 1.133668 AGGATGTTGCCCATTCTAGCC 60.134 52.381 0.00 0.00 37.65 3.93
267 268 1.322442 GATGTTGCCCATTCTAGCCC 58.678 55.000 0.00 0.00 32.56 5.19
268 269 0.929244 ATGTTGCCCATTCTAGCCCT 59.071 50.000 0.00 0.00 0.00 5.19
269 270 1.590591 TGTTGCCCATTCTAGCCCTA 58.409 50.000 0.00 0.00 0.00 3.53
270 271 1.490490 TGTTGCCCATTCTAGCCCTAG 59.510 52.381 0.00 0.00 34.56 3.02
271 272 1.768870 GTTGCCCATTCTAGCCCTAGA 59.231 52.381 0.97 0.97 40.17 2.43
295 296 4.382345 AAAAATTCAGAGCATAGCCAGC 57.618 40.909 0.00 0.00 0.00 4.85
296 297 1.978454 AATTCAGAGCATAGCCAGCC 58.022 50.000 0.00 0.00 0.00 4.85
297 298 0.110104 ATTCAGAGCATAGCCAGCCC 59.890 55.000 0.00 0.00 0.00 5.19
298 299 1.273986 TTCAGAGCATAGCCAGCCCA 61.274 55.000 0.00 0.00 0.00 5.36
299 300 1.227883 CAGAGCATAGCCAGCCCAG 60.228 63.158 0.00 0.00 0.00 4.45
300 301 1.383664 AGAGCATAGCCAGCCCAGA 60.384 57.895 0.00 0.00 0.00 3.86
301 302 0.984961 AGAGCATAGCCAGCCCAGAA 60.985 55.000 0.00 0.00 0.00 3.02
302 303 0.107017 GAGCATAGCCAGCCCAGAAA 60.107 55.000 0.00 0.00 0.00 2.52
303 304 0.106819 AGCATAGCCAGCCCAGAAAG 60.107 55.000 0.00 0.00 0.00 2.62
304 305 1.732417 GCATAGCCAGCCCAGAAAGC 61.732 60.000 0.00 0.00 0.00 3.51
305 306 0.394762 CATAGCCAGCCCAGAAAGCA 60.395 55.000 0.00 0.00 0.00 3.91
306 307 0.106819 ATAGCCAGCCCAGAAAGCAG 60.107 55.000 0.00 0.00 0.00 4.24
307 308 2.826777 TAGCCAGCCCAGAAAGCAGC 62.827 60.000 0.00 0.00 33.40 5.25
308 309 2.282674 CCAGCCCAGAAAGCAGCA 60.283 61.111 0.00 0.00 0.00 4.41
309 310 1.681327 CCAGCCCAGAAAGCAGCAT 60.681 57.895 0.00 0.00 0.00 3.79
310 311 1.664321 CCAGCCCAGAAAGCAGCATC 61.664 60.000 0.00 0.00 0.00 3.91
311 312 0.963856 CAGCCCAGAAAGCAGCATCA 60.964 55.000 0.00 0.00 0.00 3.07
312 313 0.251474 AGCCCAGAAAGCAGCATCAA 60.251 50.000 0.00 0.00 0.00 2.57
313 314 0.108945 GCCCAGAAAGCAGCATCAAC 60.109 55.000 0.00 0.00 0.00 3.18
314 315 1.542492 CCCAGAAAGCAGCATCAACT 58.458 50.000 0.00 0.00 0.00 3.16
315 316 2.715046 CCCAGAAAGCAGCATCAACTA 58.285 47.619 0.00 0.00 0.00 2.24
316 317 3.084039 CCCAGAAAGCAGCATCAACTAA 58.916 45.455 0.00 0.00 0.00 2.24
317 318 3.119708 CCCAGAAAGCAGCATCAACTAAC 60.120 47.826 0.00 0.00 0.00 2.34
318 319 3.755378 CCAGAAAGCAGCATCAACTAACT 59.245 43.478 0.00 0.00 0.00 2.24
319 320 4.217118 CCAGAAAGCAGCATCAACTAACTT 59.783 41.667 0.00 0.00 0.00 2.66
320 321 5.412594 CCAGAAAGCAGCATCAACTAACTTA 59.587 40.000 0.00 0.00 0.00 2.24
321 322 6.094603 CCAGAAAGCAGCATCAACTAACTTAT 59.905 38.462 0.00 0.00 0.00 1.73
322 323 6.965500 CAGAAAGCAGCATCAACTAACTTATG 59.035 38.462 0.00 0.00 0.00 1.90
323 324 5.824904 AAGCAGCATCAACTAACTTATGG 57.175 39.130 0.00 0.00 0.00 2.74
324 325 4.848357 AGCAGCATCAACTAACTTATGGT 58.152 39.130 0.00 0.00 0.00 3.55
325 326 4.878397 AGCAGCATCAACTAACTTATGGTC 59.122 41.667 0.00 0.00 0.00 4.02
326 327 4.635765 GCAGCATCAACTAACTTATGGTCA 59.364 41.667 0.00 0.00 0.00 4.02
327 328 5.123820 GCAGCATCAACTAACTTATGGTCAA 59.876 40.000 0.00 0.00 0.00 3.18
328 329 6.349280 GCAGCATCAACTAACTTATGGTCAAA 60.349 38.462 0.00 0.00 0.00 2.69
329 330 7.629222 GCAGCATCAACTAACTTATGGTCAAAT 60.629 37.037 0.00 0.00 0.00 2.32
330 331 8.892723 CAGCATCAACTAACTTATGGTCAAATA 58.107 33.333 0.00 0.00 0.00 1.40
331 332 9.461312 AGCATCAACTAACTTATGGTCAAATAA 57.539 29.630 0.00 0.00 0.00 1.40
332 333 9.722056 GCATCAACTAACTTATGGTCAAATAAG 57.278 33.333 3.07 3.07 43.10 1.73
338 339 5.789574 ACTTATGGTCAAATAAGTGGGGA 57.210 39.130 8.42 0.00 46.64 4.81
339 340 5.506708 ACTTATGGTCAAATAAGTGGGGAC 58.493 41.667 8.42 0.00 46.64 4.46
340 341 5.014755 ACTTATGGTCAAATAAGTGGGGACA 59.985 40.000 8.42 0.00 46.64 4.02
341 342 3.885976 TGGTCAAATAAGTGGGGACAA 57.114 42.857 0.00 0.00 46.06 3.18
342 343 3.761897 TGGTCAAATAAGTGGGGACAAG 58.238 45.455 0.00 0.00 46.06 3.16
343 344 3.089284 GGTCAAATAAGTGGGGACAAGG 58.911 50.000 0.00 0.00 46.06 3.61
344 345 3.089284 GTCAAATAAGTGGGGACAAGGG 58.911 50.000 0.00 0.00 46.06 3.95
345 346 1.824852 CAAATAAGTGGGGACAAGGGC 59.175 52.381 0.00 0.00 46.06 5.19
346 347 0.034477 AATAAGTGGGGACAAGGGCG 60.034 55.000 0.00 0.00 46.06 6.13
347 348 1.921869 ATAAGTGGGGACAAGGGCGG 61.922 60.000 0.00 0.00 46.06 6.13
352 353 4.344865 GGGACAAGGGCGGCTGAA 62.345 66.667 9.56 0.00 0.00 3.02
353 354 3.056328 GGACAAGGGCGGCTGAAC 61.056 66.667 9.56 0.74 0.00 3.18
354 355 2.281484 GACAAGGGCGGCTGAACA 60.281 61.111 9.56 0.00 0.00 3.18
355 356 2.281761 ACAAGGGCGGCTGAACAG 60.282 61.111 9.56 0.00 0.00 3.16
356 357 2.032528 CAAGGGCGGCTGAACAGA 59.967 61.111 9.56 0.00 0.00 3.41
357 358 1.600636 CAAGGGCGGCTGAACAGAA 60.601 57.895 9.56 0.00 0.00 3.02
358 359 1.600916 AAGGGCGGCTGAACAGAAC 60.601 57.895 9.56 0.00 0.00 3.01
359 360 2.281484 GGGCGGCTGAACAGAACA 60.281 61.111 9.56 0.00 0.00 3.18
360 361 1.896660 GGGCGGCTGAACAGAACAA 60.897 57.895 9.56 0.00 0.00 2.83
361 362 1.452145 GGGCGGCTGAACAGAACAAA 61.452 55.000 9.56 0.00 0.00 2.83
362 363 0.383949 GGCGGCTGAACAGAACAAAA 59.616 50.000 0.00 0.00 0.00 2.44
363 364 1.000274 GGCGGCTGAACAGAACAAAAT 60.000 47.619 0.00 0.00 0.00 1.82
364 365 2.545742 GGCGGCTGAACAGAACAAAATT 60.546 45.455 0.00 0.00 0.00 1.82
365 366 2.472488 GCGGCTGAACAGAACAAAATTG 59.528 45.455 5.97 0.00 0.00 2.32
366 367 2.472488 CGGCTGAACAGAACAAAATTGC 59.528 45.455 5.97 0.00 0.00 3.56
367 368 2.802247 GGCTGAACAGAACAAAATTGCC 59.198 45.455 5.97 0.00 0.00 4.52
368 369 2.802247 GCTGAACAGAACAAAATTGCCC 59.198 45.455 5.97 0.00 0.00 5.36
369 370 3.740764 GCTGAACAGAACAAAATTGCCCA 60.741 43.478 5.97 0.00 0.00 5.36
370 371 4.440880 CTGAACAGAACAAAATTGCCCAA 58.559 39.130 0.00 0.00 0.00 4.12
371 372 4.836825 TGAACAGAACAAAATTGCCCAAA 58.163 34.783 0.00 0.00 0.00 3.28
372 373 5.248640 TGAACAGAACAAAATTGCCCAAAA 58.751 33.333 0.00 0.00 0.00 2.44
373 374 5.707298 TGAACAGAACAAAATTGCCCAAAAA 59.293 32.000 0.00 0.00 0.00 1.94
374 375 5.559427 ACAGAACAAAATTGCCCAAAAAC 57.441 34.783 0.00 0.00 0.00 2.43
375 376 5.006386 ACAGAACAAAATTGCCCAAAAACA 58.994 33.333 0.00 0.00 0.00 2.83
376 377 5.474876 ACAGAACAAAATTGCCCAAAAACAA 59.525 32.000 0.00 0.00 0.00 2.83
377 378 6.015940 ACAGAACAAAATTGCCCAAAAACAAA 60.016 30.769 0.00 0.00 0.00 2.83
378 379 6.865205 CAGAACAAAATTGCCCAAAAACAAAA 59.135 30.769 0.00 0.00 0.00 2.44
379 380 7.544915 CAGAACAAAATTGCCCAAAAACAAAAT 59.455 29.630 0.00 0.00 0.00 1.82
380 381 8.093307 AGAACAAAATTGCCCAAAAACAAAATT 58.907 25.926 0.00 0.00 0.00 1.82
381 382 7.592439 ACAAAATTGCCCAAAAACAAAATTG 57.408 28.000 0.00 0.00 34.35 2.32
382 383 6.091849 ACAAAATTGCCCAAAAACAAAATTGC 59.908 30.769 0.00 0.00 32.80 3.56
383 384 4.996788 ATTGCCCAAAAACAAAATTGCA 57.003 31.818 0.00 0.00 0.00 4.08
384 385 3.772060 TGCCCAAAAACAAAATTGCAC 57.228 38.095 0.00 0.00 0.00 4.57
385 386 3.084039 TGCCCAAAAACAAAATTGCACA 58.916 36.364 0.00 0.00 0.00 4.57
386 387 3.119708 TGCCCAAAAACAAAATTGCACAC 60.120 39.130 0.00 0.00 0.00 3.82
387 388 3.733380 GCCCAAAAACAAAATTGCACACC 60.733 43.478 0.00 0.00 0.00 4.16
388 389 3.486542 CCCAAAAACAAAATTGCACACCG 60.487 43.478 0.00 0.00 0.00 4.94
389 390 3.486542 CCAAAAACAAAATTGCACACCGG 60.487 43.478 0.00 0.00 0.00 5.28
390 391 1.294857 AAACAAAATTGCACACCGGC 58.705 45.000 0.00 0.00 0.00 6.13
391 392 0.873743 AACAAAATTGCACACCGGCG 60.874 50.000 0.00 0.00 36.28 6.46
392 393 1.007964 CAAAATTGCACACCGGCGA 60.008 52.632 9.30 0.00 36.28 5.54
393 394 1.007849 AAAATTGCACACCGGCGAC 60.008 52.632 9.30 0.00 36.28 5.19
394 395 2.414840 AAAATTGCACACCGGCGACC 62.415 55.000 9.30 0.00 36.28 4.79
434 435 3.333189 CTGATGCGCCCGTCGATG 61.333 66.667 4.18 0.00 41.67 3.84
440 441 3.202001 CGCCCGTCGATGCCAAAT 61.202 61.111 0.00 0.00 41.67 2.32
441 442 2.715624 GCCCGTCGATGCCAAATC 59.284 61.111 0.00 0.00 0.00 2.17
442 443 2.834618 GCCCGTCGATGCCAAATCC 61.835 63.158 0.00 0.00 0.00 3.01
443 444 2.186826 CCCGTCGATGCCAAATCCC 61.187 63.158 0.00 0.00 0.00 3.85
444 445 2.534019 CCGTCGATGCCAAATCCCG 61.534 63.158 0.00 0.00 0.00 5.14
445 446 1.520564 CGTCGATGCCAAATCCCGA 60.521 57.895 0.00 0.00 0.00 5.14
446 447 0.880278 CGTCGATGCCAAATCCCGAT 60.880 55.000 0.00 0.00 0.00 4.18
447 448 0.868406 GTCGATGCCAAATCCCGATC 59.132 55.000 0.00 0.00 0.00 3.69
448 449 0.599991 TCGATGCCAAATCCCGATCG 60.600 55.000 8.51 8.51 37.78 3.69
449 450 0.599991 CGATGCCAAATCCCGATCGA 60.600 55.000 18.66 0.00 38.53 3.59
450 451 1.813513 GATGCCAAATCCCGATCGAT 58.186 50.000 18.66 0.00 0.00 3.59
451 452 2.154462 GATGCCAAATCCCGATCGATT 58.846 47.619 18.66 6.44 33.84 3.34
452 453 2.051334 TGCCAAATCCCGATCGATTT 57.949 45.000 18.66 12.62 41.98 2.17
453 454 2.374184 TGCCAAATCCCGATCGATTTT 58.626 42.857 18.66 10.10 39.82 1.82
454 455 2.098934 TGCCAAATCCCGATCGATTTTG 59.901 45.455 18.66 20.05 39.82 2.44
455 456 2.357637 GCCAAATCCCGATCGATTTTGA 59.642 45.455 25.45 13.19 39.82 2.69
456 457 3.548818 GCCAAATCCCGATCGATTTTGAG 60.549 47.826 25.45 19.39 39.82 3.02
457 458 3.548818 CCAAATCCCGATCGATTTTGAGC 60.549 47.826 25.45 0.00 39.82 4.26
458 459 1.884235 ATCCCGATCGATTTTGAGCC 58.116 50.000 18.66 0.00 0.00 4.70
459 460 0.539518 TCCCGATCGATTTTGAGCCA 59.460 50.000 18.66 0.00 0.00 4.75
460 461 0.940126 CCCGATCGATTTTGAGCCAG 59.060 55.000 18.66 0.00 0.00 4.85
461 462 1.473257 CCCGATCGATTTTGAGCCAGA 60.473 52.381 18.66 0.00 0.00 3.86
462 463 1.863454 CCGATCGATTTTGAGCCAGAG 59.137 52.381 18.66 0.00 0.00 3.35
463 464 1.863454 CGATCGATTTTGAGCCAGAGG 59.137 52.381 10.26 0.00 0.00 3.69
464 465 2.481969 CGATCGATTTTGAGCCAGAGGA 60.482 50.000 10.26 0.00 0.00 3.71
465 466 3.535561 GATCGATTTTGAGCCAGAGGAA 58.464 45.455 0.00 0.00 0.00 3.36
466 467 3.634397 TCGATTTTGAGCCAGAGGAAT 57.366 42.857 0.00 0.00 0.00 3.01
467 468 3.535561 TCGATTTTGAGCCAGAGGAATC 58.464 45.455 0.00 0.00 0.00 2.52
468 469 3.055167 TCGATTTTGAGCCAGAGGAATCA 60.055 43.478 0.00 0.00 0.00 2.57
469 470 3.064545 CGATTTTGAGCCAGAGGAATCAC 59.935 47.826 0.00 0.00 0.00 3.06
470 471 3.507162 TTTTGAGCCAGAGGAATCACA 57.493 42.857 0.00 0.00 0.00 3.58
471 472 3.507162 TTTGAGCCAGAGGAATCACAA 57.493 42.857 0.00 0.00 0.00 3.33
472 473 2.775911 TGAGCCAGAGGAATCACAAG 57.224 50.000 0.00 0.00 0.00 3.16
473 474 1.339438 TGAGCCAGAGGAATCACAAGC 60.339 52.381 0.00 0.00 0.00 4.01
474 475 0.034670 AGCCAGAGGAATCACAAGCC 60.035 55.000 0.00 0.00 0.00 4.35
475 476 0.034670 GCCAGAGGAATCACAAGCCT 60.035 55.000 0.00 0.00 33.97 4.58
476 477 2.016096 GCCAGAGGAATCACAAGCCTC 61.016 57.143 0.00 0.00 46.75 4.70
479 480 2.725221 GAGGAATCACAAGCCTCCAT 57.275 50.000 0.00 0.00 41.84 3.41
480 481 2.570135 GAGGAATCACAAGCCTCCATC 58.430 52.381 0.00 0.00 41.84 3.51
481 482 1.134280 AGGAATCACAAGCCTCCATCG 60.134 52.381 0.00 0.00 0.00 3.84
482 483 0.659957 GAATCACAAGCCTCCATCGC 59.340 55.000 0.00 0.00 0.00 4.58
483 484 0.749454 AATCACAAGCCTCCATCGCC 60.749 55.000 0.00 0.00 0.00 5.54
484 485 1.913951 ATCACAAGCCTCCATCGCCA 61.914 55.000 0.00 0.00 0.00 5.69
485 486 1.452651 CACAAGCCTCCATCGCCAT 60.453 57.895 0.00 0.00 0.00 4.40
486 487 1.153086 ACAAGCCTCCATCGCCATC 60.153 57.895 0.00 0.00 0.00 3.51
487 488 2.109799 AAGCCTCCATCGCCATCG 59.890 61.111 0.00 0.00 0.00 3.84
572 574 2.596452 CGTCAGTCAGTCAGCGTTTAT 58.404 47.619 0.00 0.00 0.00 1.40
576 578 5.220043 CGTCAGTCAGTCAGCGTTTATTTAG 60.220 44.000 0.00 0.00 0.00 1.85
578 580 3.933332 AGTCAGTCAGCGTTTATTTAGGC 59.067 43.478 0.00 0.00 0.00 3.93
1113 1127 3.365265 CTCACAACCGCCAAGGCC 61.365 66.667 5.34 0.00 46.52 5.19
1149 1163 1.819903 GGATGTAGTATCCTCGCCTCC 59.180 57.143 0.00 0.00 35.36 4.30
1150 1164 2.555670 GGATGTAGTATCCTCGCCTCCT 60.556 54.545 0.00 0.00 35.36 3.69
1151 1165 2.273538 TGTAGTATCCTCGCCTCCTC 57.726 55.000 0.00 0.00 0.00 3.71
1162 1176 2.420890 CCTCCTCCTCTGCGATGC 59.579 66.667 0.00 0.00 0.00 3.91
1344 1374 2.046217 GGCAAGAACTCCCCCGAC 60.046 66.667 0.00 0.00 0.00 4.79
1634 1667 1.743252 CCAAGCTCAGGTTCGAGGC 60.743 63.158 0.00 0.00 33.36 4.70
1851 1884 3.372554 CTTCGACCGGGAGAAGGCC 62.373 68.421 24.78 0.00 39.94 5.19
1866 1899 2.644992 GCCAACAAGGTGCTTCCG 59.355 61.111 0.00 0.00 41.99 4.30
1869 1902 0.804989 CCAACAAGGTGCTTCCGATC 59.195 55.000 0.00 0.00 41.99 3.69
1962 1997 0.753111 GGTTCATCAGGGTGCCCATC 60.753 60.000 10.26 0.00 38.92 3.51
2022 2057 3.647771 AAGGTGTTCCCGGGGCTC 61.648 66.667 23.50 14.48 38.74 4.70
2061 2096 2.483188 CGGCAAGATTGGGAGGTACTAC 60.483 54.545 0.00 0.00 41.55 2.73
2079 2115 3.260483 GCGTCGGAGAGCATGCTG 61.260 66.667 28.27 11.05 36.95 4.41
2184 2220 2.587522 GTGATAAGGGAAGGAATGGCC 58.412 52.381 0.00 0.00 0.00 5.36
2243 2279 4.316025 AGGCCTTCCAGCTTGTAAATTA 57.684 40.909 0.00 0.00 33.74 1.40
2245 2281 4.889995 AGGCCTTCCAGCTTGTAAATTATC 59.110 41.667 0.00 0.00 33.74 1.75
2246 2282 4.038042 GGCCTTCCAGCTTGTAAATTATCC 59.962 45.833 0.00 0.00 0.00 2.59
2249 2286 6.127338 GCCTTCCAGCTTGTAAATTATCCTTT 60.127 38.462 0.00 0.00 0.00 3.11
2284 2321 6.540995 AGTGTAGTGAGGTAAGTGAGACTTA 58.459 40.000 0.00 0.00 39.51 2.24
2286 2323 8.327271 AGTGTAGTGAGGTAAGTGAGACTTATA 58.673 37.037 0.00 0.00 42.06 0.98
2317 2354 2.263945 CGTTTGTGTTTCCAACCCAAC 58.736 47.619 0.00 0.00 28.47 3.77
2378 2415 8.791675 AGGAACGGTCGGTTTTAAATTAATAAA 58.208 29.630 0.00 0.00 39.50 1.40
2443 3016 3.385193 AACTGGTACCAAAATTGCTGC 57.615 42.857 17.11 0.00 0.00 5.25
2453 3026 2.103537 AAATTGCTGCCATTCAAGCC 57.896 45.000 0.00 0.00 0.00 4.35
2458 3031 2.681064 TGCCATTCAAGCCAGGGC 60.681 61.111 0.97 0.97 44.82 5.19
2470 3045 0.392327 GCCAGGGCTCTCTTTGTCTC 60.392 60.000 2.30 0.00 38.26 3.36
2475 3050 0.390472 GGCTCTCTTTGTCTCCACCG 60.390 60.000 0.00 0.00 0.00 4.94
2490 3065 1.079819 ACCGACGCCTCACTTGATG 60.080 57.895 0.00 0.00 0.00 3.07
2491 3066 1.079819 CCGACGCCTCACTTGATGT 60.080 57.895 0.00 0.00 0.00 3.06
2493 3068 1.269166 CGACGCCTCACTTGATGTAC 58.731 55.000 0.00 0.00 0.00 2.90
2494 3069 1.402325 CGACGCCTCACTTGATGTACA 60.402 52.381 0.00 0.00 0.00 2.90
2496 3071 3.262420 GACGCCTCACTTGATGTACAAT 58.738 45.455 0.00 0.00 37.88 2.71
2497 3072 3.002791 ACGCCTCACTTGATGTACAATG 58.997 45.455 0.00 0.00 37.88 2.82
2498 3073 3.261580 CGCCTCACTTGATGTACAATGA 58.738 45.455 0.00 0.00 37.88 2.57
2564 3139 5.580691 CGGAAGTGATTGCTCATTAACTGTA 59.419 40.000 0.00 0.00 32.98 2.74
2641 3218 6.010850 TCTACTCAATGTCTCAGTTGGTAGT 58.989 40.000 0.00 0.00 34.43 2.73
2642 3219 5.140747 ACTCAATGTCTCAGTTGGTAGTC 57.859 43.478 0.00 0.00 0.00 2.59
2643 3220 4.835615 ACTCAATGTCTCAGTTGGTAGTCT 59.164 41.667 0.00 0.00 0.00 3.24
2653 3230 1.180456 TTGGTAGTCTGCGTTCCGGA 61.180 55.000 0.00 0.00 0.00 5.14
2673 3250 4.877251 CGGATTTTATTTTCGTCCCACCTA 59.123 41.667 0.00 0.00 0.00 3.08
2675 3252 6.038936 CGGATTTTATTTTCGTCCCACCTAAT 59.961 38.462 0.00 0.00 0.00 1.73
2676 3253 7.227116 CGGATTTTATTTTCGTCCCACCTAATA 59.773 37.037 0.00 0.00 0.00 0.98
2677 3254 9.074576 GGATTTTATTTTCGTCCCACCTAATAT 57.925 33.333 0.00 0.00 0.00 1.28
2681 3258 4.847990 TTTCGTCCCACCTAATATGGTT 57.152 40.909 0.00 0.00 38.45 3.67
2682 3259 4.847990 TTCGTCCCACCTAATATGGTTT 57.152 40.909 0.00 0.00 38.45 3.27
2683 3260 4.847990 TCGTCCCACCTAATATGGTTTT 57.152 40.909 0.00 0.00 38.45 2.43
2737 3315 1.494721 TCCCACTCAGCCTGAAAAACT 59.505 47.619 0.00 0.00 0.00 2.66
2740 3318 3.503748 CCCACTCAGCCTGAAAAACTAAG 59.496 47.826 0.00 0.00 0.00 2.18
2741 3319 4.389374 CCACTCAGCCTGAAAAACTAAGA 58.611 43.478 0.00 0.00 0.00 2.10
2750 3328 5.286438 CCTGAAAAACTAAGAAAAACCCCG 58.714 41.667 0.00 0.00 0.00 5.73
2817 3395 4.066490 ACACGATCGAAAATAAACCACCA 58.934 39.130 24.34 0.00 0.00 4.17
2845 3423 0.523966 CCGGCGAAAATTAACCAGCA 59.476 50.000 9.30 0.00 0.00 4.41
2850 3428 4.151512 CGGCGAAAATTAACCAGCAAAAAT 59.848 37.500 0.00 0.00 0.00 1.82
2865 3443 7.335422 ACCAGCAAAAATAACACAAACAAATCA 59.665 29.630 0.00 0.00 0.00 2.57
2874 3452 1.748493 ACAAACAAATCACACGCAGGT 59.252 42.857 0.00 0.00 0.00 4.00
2924 3502 2.833582 TCGATCCTCAGGACGCCC 60.834 66.667 0.00 0.00 32.98 6.13
2926 3504 2.764128 GATCCTCAGGACGCCCCA 60.764 66.667 0.00 0.00 37.41 4.96
2927 3505 2.285368 ATCCTCAGGACGCCCCAA 60.285 61.111 0.00 0.00 37.41 4.12
2928 3506 2.595009 GATCCTCAGGACGCCCCAAC 62.595 65.000 0.00 0.00 37.41 3.77
2949 3527 2.268920 GACAGCCCTTCGCCATCA 59.731 61.111 0.00 0.00 38.78 3.07
3160 3739 0.039617 CCATCGACCTCTGAGATCGC 60.040 60.000 16.59 0.00 29.38 4.58
3184 3763 3.709587 TCCCTCTCTATTTCTGGTTCGT 58.290 45.455 0.00 0.00 0.00 3.85
3209 3788 3.139211 GCCTCTCTCCCTTTTCCCAATAT 59.861 47.826 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.934120 ACTGATAACAAGACTTTCAAGCTAACT 59.066 33.333 0.00 0.00 0.00 2.24
2 3 8.012241 CACTGATAACAAGACTTTCAAGCTAAC 58.988 37.037 0.00 0.00 0.00 2.34
4 5 6.650807 CCACTGATAACAAGACTTTCAAGCTA 59.349 38.462 0.00 0.00 0.00 3.32
5 6 5.471456 CCACTGATAACAAGACTTTCAAGCT 59.529 40.000 0.00 0.00 0.00 3.74
6 7 5.470098 TCCACTGATAACAAGACTTTCAAGC 59.530 40.000 0.00 0.00 0.00 4.01
9 10 6.174720 ACTCCACTGATAACAAGACTTTCA 57.825 37.500 0.00 0.00 0.00 2.69
11 12 6.357367 ACAACTCCACTGATAACAAGACTTT 58.643 36.000 0.00 0.00 0.00 2.66
13 14 5.552870 ACAACTCCACTGATAACAAGACT 57.447 39.130 0.00 0.00 0.00 3.24
14 15 5.758296 TCAACAACTCCACTGATAACAAGAC 59.242 40.000 0.00 0.00 0.00 3.01
15 16 5.924356 TCAACAACTCCACTGATAACAAGA 58.076 37.500 0.00 0.00 0.00 3.02
16 17 5.991606 TCTCAACAACTCCACTGATAACAAG 59.008 40.000 0.00 0.00 0.00 3.16
17 18 5.924356 TCTCAACAACTCCACTGATAACAA 58.076 37.500 0.00 0.00 0.00 2.83
18 19 5.545063 TCTCAACAACTCCACTGATAACA 57.455 39.130 0.00 0.00 0.00 2.41
19 20 6.650807 TGAATCTCAACAACTCCACTGATAAC 59.349 38.462 0.00 0.00 0.00 1.89
20 21 6.650807 GTGAATCTCAACAACTCCACTGATAA 59.349 38.462 0.00 0.00 0.00 1.75
21 22 6.166279 GTGAATCTCAACAACTCCACTGATA 58.834 40.000 0.00 0.00 0.00 2.15
22 23 4.999950 GTGAATCTCAACAACTCCACTGAT 59.000 41.667 0.00 0.00 0.00 2.90
23 24 4.141733 TGTGAATCTCAACAACTCCACTGA 60.142 41.667 0.00 0.00 0.00 3.41
24 25 4.129380 TGTGAATCTCAACAACTCCACTG 58.871 43.478 0.00 0.00 0.00 3.66
25 26 4.141620 ACTGTGAATCTCAACAACTCCACT 60.142 41.667 0.00 0.00 0.00 4.00
26 27 4.130118 ACTGTGAATCTCAACAACTCCAC 58.870 43.478 0.00 0.00 0.00 4.02
27 28 4.380531 GACTGTGAATCTCAACAACTCCA 58.619 43.478 0.00 0.00 0.00 3.86
28 29 3.430218 CGACTGTGAATCTCAACAACTCC 59.570 47.826 0.00 0.00 0.00 3.85
29 30 3.120854 GCGACTGTGAATCTCAACAACTC 60.121 47.826 0.00 0.00 0.00 3.01
30 31 2.802816 GCGACTGTGAATCTCAACAACT 59.197 45.455 0.00 0.00 0.00 3.16
31 32 2.410262 CGCGACTGTGAATCTCAACAAC 60.410 50.000 0.00 0.00 0.00 3.32
32 33 1.792367 CGCGACTGTGAATCTCAACAA 59.208 47.619 0.00 0.00 0.00 2.83
33 34 1.418373 CGCGACTGTGAATCTCAACA 58.582 50.000 0.00 0.00 0.00 3.33
34 35 0.716108 CCGCGACTGTGAATCTCAAC 59.284 55.000 8.23 0.00 0.00 3.18
35 36 0.601057 TCCGCGACTGTGAATCTCAA 59.399 50.000 8.23 0.00 0.00 3.02
36 37 0.171231 CTCCGCGACTGTGAATCTCA 59.829 55.000 8.23 0.00 0.00 3.27
37 38 0.452184 TCTCCGCGACTGTGAATCTC 59.548 55.000 8.23 0.00 0.00 2.75
38 39 0.453793 CTCTCCGCGACTGTGAATCT 59.546 55.000 8.23 0.00 0.00 2.40
39 40 0.526524 CCTCTCCGCGACTGTGAATC 60.527 60.000 8.23 0.00 0.00 2.52
40 41 0.965866 TCCTCTCCGCGACTGTGAAT 60.966 55.000 8.23 0.00 0.00 2.57
41 42 1.176619 TTCCTCTCCGCGACTGTGAA 61.177 55.000 8.23 1.54 0.00 3.18
42 43 1.587043 CTTCCTCTCCGCGACTGTGA 61.587 60.000 8.23 0.00 0.00 3.58
43 44 1.153939 CTTCCTCTCCGCGACTGTG 60.154 63.158 8.23 0.00 0.00 3.66
44 45 0.322277 TACTTCCTCTCCGCGACTGT 60.322 55.000 8.23 0.00 0.00 3.55
45 46 0.099082 GTACTTCCTCTCCGCGACTG 59.901 60.000 8.23 0.00 0.00 3.51
46 47 1.367599 CGTACTTCCTCTCCGCGACT 61.368 60.000 8.23 0.00 0.00 4.18
47 48 1.062206 CGTACTTCCTCTCCGCGAC 59.938 63.158 8.23 0.00 0.00 5.19
48 49 2.758089 GCGTACTTCCTCTCCGCGA 61.758 63.158 8.23 0.00 34.66 5.87
49 50 2.278013 GCGTACTTCCTCTCCGCG 60.278 66.667 0.00 0.00 34.66 6.46
50 51 2.104530 GGCGTACTTCCTCTCCGC 59.895 66.667 0.00 0.00 43.35 5.54
51 52 2.783288 GGGGCGTACTTCCTCTCCG 61.783 68.421 0.00 0.00 0.00 4.63
52 53 1.677637 CTGGGGCGTACTTCCTCTCC 61.678 65.000 3.08 0.00 0.00 3.71
53 54 0.971447 ACTGGGGCGTACTTCCTCTC 60.971 60.000 3.08 0.00 0.00 3.20
54 55 0.544595 AACTGGGGCGTACTTCCTCT 60.545 55.000 3.08 0.00 0.00 3.69
55 56 0.323957 AAACTGGGGCGTACTTCCTC 59.676 55.000 0.00 0.00 0.00 3.71
56 57 0.036306 CAAACTGGGGCGTACTTCCT 59.964 55.000 0.00 0.00 0.00 3.36
57 58 0.250597 ACAAACTGGGGCGTACTTCC 60.251 55.000 0.00 0.00 0.00 3.46
58 59 2.071540 GTACAAACTGGGGCGTACTTC 58.928 52.381 0.00 0.00 33.13 3.01
59 60 1.417145 TGTACAAACTGGGGCGTACTT 59.583 47.619 0.00 0.00 36.14 2.24
60 61 1.050204 TGTACAAACTGGGGCGTACT 58.950 50.000 0.00 0.00 36.14 2.73
61 62 2.103537 ATGTACAAACTGGGGCGTAC 57.896 50.000 0.00 0.00 35.79 3.67
62 63 2.038689 TCAATGTACAAACTGGGGCGTA 59.961 45.455 0.00 0.00 0.00 4.42
63 64 1.202830 TCAATGTACAAACTGGGGCGT 60.203 47.619 0.00 0.00 0.00 5.68
64 65 1.199097 GTCAATGTACAAACTGGGGCG 59.801 52.381 0.00 0.00 0.00 6.13
65 66 1.199097 CGTCAATGTACAAACTGGGGC 59.801 52.381 0.00 0.00 0.00 5.80
66 67 2.482721 GTCGTCAATGTACAAACTGGGG 59.517 50.000 0.00 0.00 0.00 4.96
67 68 2.156891 CGTCGTCAATGTACAAACTGGG 59.843 50.000 0.00 0.00 0.00 4.45
68 69 2.156891 CCGTCGTCAATGTACAAACTGG 59.843 50.000 0.00 0.00 0.00 4.00
69 70 2.798283 ACCGTCGTCAATGTACAAACTG 59.202 45.455 0.00 0.00 0.00 3.16
70 71 3.102052 ACCGTCGTCAATGTACAAACT 57.898 42.857 0.00 0.00 0.00 2.66
71 72 4.208873 TGTTACCGTCGTCAATGTACAAAC 59.791 41.667 0.00 0.00 0.00 2.93
72 73 4.366586 TGTTACCGTCGTCAATGTACAAA 58.633 39.130 0.00 0.00 0.00 2.83
73 74 3.974912 TGTTACCGTCGTCAATGTACAA 58.025 40.909 0.00 0.00 0.00 2.41
74 75 3.567530 CTGTTACCGTCGTCAATGTACA 58.432 45.455 0.00 0.00 0.00 2.90
75 76 2.343544 GCTGTTACCGTCGTCAATGTAC 59.656 50.000 0.00 0.00 0.00 2.90
76 77 2.229543 AGCTGTTACCGTCGTCAATGTA 59.770 45.455 0.00 0.00 0.00 2.29
77 78 1.000506 AGCTGTTACCGTCGTCAATGT 59.999 47.619 0.00 0.00 0.00 2.71
78 79 1.710013 AGCTGTTACCGTCGTCAATG 58.290 50.000 0.00 0.00 0.00 2.82
79 80 2.288579 TGAAGCTGTTACCGTCGTCAAT 60.289 45.455 0.00 0.00 0.00 2.57
80 81 1.067364 TGAAGCTGTTACCGTCGTCAA 59.933 47.619 0.00 0.00 0.00 3.18
81 82 0.669619 TGAAGCTGTTACCGTCGTCA 59.330 50.000 0.00 0.00 0.00 4.35
82 83 1.992170 ATGAAGCTGTTACCGTCGTC 58.008 50.000 0.00 0.00 0.00 4.20
83 84 2.066262 CAATGAAGCTGTTACCGTCGT 58.934 47.619 0.00 0.00 0.00 4.34
84 85 2.066262 ACAATGAAGCTGTTACCGTCG 58.934 47.619 0.00 0.00 0.00 5.12
85 86 2.415512 GGACAATGAAGCTGTTACCGTC 59.584 50.000 0.00 0.00 0.00 4.79
86 87 2.423577 GGACAATGAAGCTGTTACCGT 58.576 47.619 0.00 0.00 0.00 4.83
87 88 1.737793 GGGACAATGAAGCTGTTACCG 59.262 52.381 0.00 0.00 0.00 4.02
88 89 2.790433 TGGGACAATGAAGCTGTTACC 58.210 47.619 0.00 0.00 31.92 2.85
103 104 3.821033 GTGGCATCCTGTTATTATGGGAC 59.179 47.826 0.00 0.00 0.00 4.46
104 105 3.181434 GGTGGCATCCTGTTATTATGGGA 60.181 47.826 0.00 0.00 0.00 4.37
105 106 3.157087 GGTGGCATCCTGTTATTATGGG 58.843 50.000 0.00 0.00 0.00 4.00
106 107 4.104383 AGGTGGCATCCTGTTATTATGG 57.896 45.455 7.67 0.00 36.35 2.74
107 108 6.772716 ACTAAAGGTGGCATCCTGTTATTATG 59.227 38.462 9.00 0.00 37.93 1.90
108 109 6.772716 CACTAAAGGTGGCATCCTGTTATTAT 59.227 38.462 9.00 0.00 41.90 1.28
109 110 6.119536 CACTAAAGGTGGCATCCTGTTATTA 58.880 40.000 9.00 4.42 41.90 0.98
110 111 4.949856 CACTAAAGGTGGCATCCTGTTATT 59.050 41.667 9.00 3.63 41.90 1.40
111 112 4.526970 CACTAAAGGTGGCATCCTGTTAT 58.473 43.478 9.00 1.21 41.90 1.89
112 113 3.872240 GCACTAAAGGTGGCATCCTGTTA 60.872 47.826 9.00 8.81 45.44 2.41
113 114 2.795329 CACTAAAGGTGGCATCCTGTT 58.205 47.619 9.00 8.29 41.90 3.16
114 115 1.614317 GCACTAAAGGTGGCATCCTGT 60.614 52.381 9.00 6.70 45.44 4.00
115 116 1.098050 GCACTAAAGGTGGCATCCTG 58.902 55.000 9.00 1.27 45.44 3.86
116 117 3.577389 GCACTAAAGGTGGCATCCT 57.423 52.632 0.00 0.00 45.44 3.24
122 123 1.818674 GGTTGATGGCACTAAAGGTGG 59.181 52.381 0.00 0.00 45.44 4.61
124 125 1.613255 CCGGTTGATGGCACTAAAGGT 60.613 52.381 0.00 0.00 0.00 3.50
125 126 1.094785 CCGGTTGATGGCACTAAAGG 58.905 55.000 0.00 0.00 0.00 3.11
126 127 1.737793 GACCGGTTGATGGCACTAAAG 59.262 52.381 9.42 0.00 0.00 1.85
127 128 1.349688 AGACCGGTTGATGGCACTAAA 59.650 47.619 9.42 0.00 0.00 1.85
128 129 0.981183 AGACCGGTTGATGGCACTAA 59.019 50.000 9.42 0.00 0.00 2.24
129 130 1.855295 TAGACCGGTTGATGGCACTA 58.145 50.000 9.42 0.00 0.00 2.74
130 131 1.134401 CATAGACCGGTTGATGGCACT 60.134 52.381 9.42 0.00 0.00 4.40
131 132 1.134521 TCATAGACCGGTTGATGGCAC 60.135 52.381 22.56 4.02 0.00 5.01
132 133 1.138859 CTCATAGACCGGTTGATGGCA 59.861 52.381 22.56 9.28 0.00 4.92
133 134 1.871080 CTCATAGACCGGTTGATGGC 58.129 55.000 22.56 5.37 0.00 4.40
134 135 1.138859 TGCTCATAGACCGGTTGATGG 59.861 52.381 22.56 16.33 0.00 3.51
135 136 2.602257 TGCTCATAGACCGGTTGATG 57.398 50.000 9.42 15.71 0.00 3.07
136 137 3.535561 CTTTGCTCATAGACCGGTTGAT 58.464 45.455 9.42 1.72 0.00 2.57
137 138 2.935238 GCTTTGCTCATAGACCGGTTGA 60.935 50.000 9.42 8.09 0.00 3.18
138 139 1.398390 GCTTTGCTCATAGACCGGTTG 59.602 52.381 9.42 2.75 0.00 3.77
139 140 1.279271 AGCTTTGCTCATAGACCGGTT 59.721 47.619 9.42 0.87 30.62 4.44
140 141 0.905357 AGCTTTGCTCATAGACCGGT 59.095 50.000 6.92 6.92 30.62 5.28
141 142 2.029838 AAGCTTTGCTCATAGACCGG 57.970 50.000 0.00 0.00 38.25 5.28
142 143 3.436704 TCAAAAGCTTTGCTCATAGACCG 59.563 43.478 13.54 0.00 38.25 4.79
143 144 4.142513 CCTCAAAAGCTTTGCTCATAGACC 60.143 45.833 13.54 0.00 38.25 3.85
144 145 4.673841 GCCTCAAAAGCTTTGCTCATAGAC 60.674 45.833 13.54 0.00 38.25 2.59
145 146 3.441572 GCCTCAAAAGCTTTGCTCATAGA 59.558 43.478 13.54 2.20 38.25 1.98
146 147 3.730061 CGCCTCAAAAGCTTTGCTCATAG 60.730 47.826 13.54 4.39 38.25 2.23
147 148 2.162208 CGCCTCAAAAGCTTTGCTCATA 59.838 45.455 13.54 0.00 38.25 2.15
148 149 1.068055 CGCCTCAAAAGCTTTGCTCAT 60.068 47.619 13.54 0.00 38.25 2.90
149 150 0.311790 CGCCTCAAAAGCTTTGCTCA 59.688 50.000 13.54 0.00 38.25 4.26
150 151 0.312102 ACGCCTCAAAAGCTTTGCTC 59.688 50.000 13.54 0.17 38.25 4.26
151 152 0.746659 AACGCCTCAAAAGCTTTGCT 59.253 45.000 13.54 0.00 42.56 3.91
152 153 0.854705 CAACGCCTCAAAAGCTTTGC 59.145 50.000 13.54 10.72 33.51 3.68
153 154 2.119457 GTCAACGCCTCAAAAGCTTTG 58.881 47.619 13.54 7.34 39.94 2.77
154 155 1.067060 GGTCAACGCCTCAAAAGCTTT 59.933 47.619 5.69 5.69 0.00 3.51
155 156 0.668535 GGTCAACGCCTCAAAAGCTT 59.331 50.000 0.00 0.00 0.00 3.74
156 157 1.507141 CGGTCAACGCCTCAAAAGCT 61.507 55.000 0.00 0.00 34.82 3.74
157 158 1.082104 CGGTCAACGCCTCAAAAGC 60.082 57.895 0.00 0.00 34.82 3.51
168 169 2.280628 CTTCTTATCTGGGCGGTCAAC 58.719 52.381 0.00 0.00 0.00 3.18
169 170 1.406887 GCTTCTTATCTGGGCGGTCAA 60.407 52.381 0.00 0.00 0.00 3.18
170 171 0.178068 GCTTCTTATCTGGGCGGTCA 59.822 55.000 0.00 0.00 0.00 4.02
171 172 0.876342 CGCTTCTTATCTGGGCGGTC 60.876 60.000 0.00 0.00 41.77 4.79
172 173 1.144057 CGCTTCTTATCTGGGCGGT 59.856 57.895 0.00 0.00 41.77 5.68
173 174 0.034059 ATCGCTTCTTATCTGGGCGG 59.966 55.000 0.00 0.00 44.88 6.13
174 175 1.143305 CATCGCTTCTTATCTGGGCG 58.857 55.000 0.00 0.00 45.93 6.13
175 176 1.070758 TCCATCGCTTCTTATCTGGGC 59.929 52.381 0.00 0.00 0.00 5.36
176 177 2.760374 GTCCATCGCTTCTTATCTGGG 58.240 52.381 0.00 0.00 0.00 4.45
177 178 2.398498 CGTCCATCGCTTCTTATCTGG 58.602 52.381 0.00 0.00 0.00 3.86
178 179 2.034685 TCCGTCCATCGCTTCTTATCTG 59.965 50.000 0.00 0.00 38.35 2.90
179 180 2.307768 TCCGTCCATCGCTTCTTATCT 58.692 47.619 0.00 0.00 38.35 1.98
180 181 2.795175 TCCGTCCATCGCTTCTTATC 57.205 50.000 0.00 0.00 38.35 1.75
181 182 2.628178 TGATCCGTCCATCGCTTCTTAT 59.372 45.455 0.00 0.00 38.35 1.73
182 183 2.028876 TGATCCGTCCATCGCTTCTTA 58.971 47.619 0.00 0.00 38.35 2.10
183 184 0.824109 TGATCCGTCCATCGCTTCTT 59.176 50.000 0.00 0.00 38.35 2.52
184 185 0.824109 TTGATCCGTCCATCGCTTCT 59.176 50.000 0.00 0.00 38.35 2.85
185 186 1.528586 CATTGATCCGTCCATCGCTTC 59.471 52.381 0.00 0.00 38.35 3.86
186 187 1.586422 CATTGATCCGTCCATCGCTT 58.414 50.000 0.00 0.00 38.35 4.68
187 188 0.250038 CCATTGATCCGTCCATCGCT 60.250 55.000 0.00 0.00 38.35 4.93
188 189 0.532862 ACCATTGATCCGTCCATCGC 60.533 55.000 0.00 0.00 38.35 4.58
189 190 1.069204 AGACCATTGATCCGTCCATCG 59.931 52.381 0.00 0.00 39.52 3.84
190 191 2.487934 CAGACCATTGATCCGTCCATC 58.512 52.381 0.00 0.00 0.00 3.51
191 192 1.475751 GCAGACCATTGATCCGTCCAT 60.476 52.381 0.00 0.00 0.00 3.41
192 193 0.107703 GCAGACCATTGATCCGTCCA 60.108 55.000 0.00 0.00 0.00 4.02
193 194 0.107703 TGCAGACCATTGATCCGTCC 60.108 55.000 0.00 0.00 0.00 4.79
194 195 1.398390 GTTGCAGACCATTGATCCGTC 59.602 52.381 0.00 0.00 0.00 4.79
195 196 1.003580 AGTTGCAGACCATTGATCCGT 59.996 47.619 0.00 0.00 0.00 4.69
196 197 1.742761 AGTTGCAGACCATTGATCCG 58.257 50.000 0.00 0.00 0.00 4.18
197 198 2.096496 CGAAGTTGCAGACCATTGATCC 59.904 50.000 0.00 0.00 0.00 3.36
198 199 3.002791 TCGAAGTTGCAGACCATTGATC 58.997 45.455 0.00 0.00 0.00 2.92
199 200 3.057969 TCGAAGTTGCAGACCATTGAT 57.942 42.857 0.00 0.00 0.00 2.57
200 201 2.542020 TCGAAGTTGCAGACCATTGA 57.458 45.000 0.00 0.00 0.00 2.57
201 202 3.438087 AGAATCGAAGTTGCAGACCATTG 59.562 43.478 0.00 0.00 0.00 2.82
202 203 3.679389 AGAATCGAAGTTGCAGACCATT 58.321 40.909 0.00 0.00 0.00 3.16
203 204 3.340814 AGAATCGAAGTTGCAGACCAT 57.659 42.857 0.00 0.00 0.00 3.55
204 205 2.807967 CAAGAATCGAAGTTGCAGACCA 59.192 45.455 0.00 0.00 0.00 4.02
205 206 2.160417 CCAAGAATCGAAGTTGCAGACC 59.840 50.000 0.00 0.00 0.00 3.85
206 207 3.067106 TCCAAGAATCGAAGTTGCAGAC 58.933 45.455 0.00 0.00 0.00 3.51
207 208 3.401033 TCCAAGAATCGAAGTTGCAGA 57.599 42.857 0.00 0.00 0.00 4.26
208 209 3.730061 GCATCCAAGAATCGAAGTTGCAG 60.730 47.826 0.00 0.00 0.00 4.41
209 210 2.162208 GCATCCAAGAATCGAAGTTGCA 59.838 45.455 0.00 0.00 0.00 4.08
210 211 2.162208 TGCATCCAAGAATCGAAGTTGC 59.838 45.455 0.00 0.00 0.00 4.17
211 212 4.424061 TTGCATCCAAGAATCGAAGTTG 57.576 40.909 0.00 0.00 0.00 3.16
212 213 4.321230 GGTTTGCATCCAAGAATCGAAGTT 60.321 41.667 0.00 0.00 31.52 2.66
213 214 3.191371 GGTTTGCATCCAAGAATCGAAGT 59.809 43.478 0.00 0.00 31.52 3.01
214 215 3.191162 TGGTTTGCATCCAAGAATCGAAG 59.809 43.478 8.42 0.00 31.52 3.79
215 216 3.153130 TGGTTTGCATCCAAGAATCGAA 58.847 40.909 8.42 0.00 31.52 3.71
216 217 2.749076 CTGGTTTGCATCCAAGAATCGA 59.251 45.455 11.40 0.00 34.35 3.59
217 218 2.749076 TCTGGTTTGCATCCAAGAATCG 59.251 45.455 11.40 1.23 34.35 3.34
218 219 4.996788 ATCTGGTTTGCATCCAAGAATC 57.003 40.909 11.40 0.00 34.35 2.52
219 220 5.716228 TGTAATCTGGTTTGCATCCAAGAAT 59.284 36.000 11.40 7.63 34.35 2.40
220 221 5.076182 TGTAATCTGGTTTGCATCCAAGAA 58.924 37.500 11.40 2.73 34.35 2.52
221 222 4.661222 TGTAATCTGGTTTGCATCCAAGA 58.339 39.130 11.40 10.85 34.35 3.02
222 223 4.142315 CCTGTAATCTGGTTTGCATCCAAG 60.142 45.833 11.40 5.86 34.35 3.61
223 224 3.763360 CCTGTAATCTGGTTTGCATCCAA 59.237 43.478 11.40 4.85 34.35 3.53
224 225 3.010027 TCCTGTAATCTGGTTTGCATCCA 59.990 43.478 10.12 10.12 34.80 3.41
225 226 3.620488 TCCTGTAATCTGGTTTGCATCC 58.380 45.455 0.00 0.00 34.80 3.51
226 227 3.629398 CCTCCTGTAATCTGGTTTGCATC 59.371 47.826 0.00 0.00 34.80 3.91
227 228 3.266772 TCCTCCTGTAATCTGGTTTGCAT 59.733 43.478 0.00 0.00 34.80 3.96
228 229 2.642311 TCCTCCTGTAATCTGGTTTGCA 59.358 45.455 0.00 0.00 34.80 4.08
229 230 3.350219 TCCTCCTGTAATCTGGTTTGC 57.650 47.619 0.00 0.00 34.80 3.68
230 231 4.848357 ACATCCTCCTGTAATCTGGTTTG 58.152 43.478 0.00 0.00 34.80 2.93
231 232 5.256474 CAACATCCTCCTGTAATCTGGTTT 58.744 41.667 0.00 0.00 34.80 3.27
232 233 4.848357 CAACATCCTCCTGTAATCTGGTT 58.152 43.478 0.00 0.00 34.80 3.67
233 234 3.370953 GCAACATCCTCCTGTAATCTGGT 60.371 47.826 0.00 0.00 34.80 4.00
234 235 3.209410 GCAACATCCTCCTGTAATCTGG 58.791 50.000 0.00 0.00 0.00 3.86
235 236 3.209410 GGCAACATCCTCCTGTAATCTG 58.791 50.000 0.00 0.00 0.00 2.90
236 237 2.173569 GGGCAACATCCTCCTGTAATCT 59.826 50.000 0.00 0.00 39.74 2.40
237 238 2.092429 TGGGCAACATCCTCCTGTAATC 60.092 50.000 0.00 0.00 39.74 1.75
238 239 1.922447 TGGGCAACATCCTCCTGTAAT 59.078 47.619 0.00 0.00 39.74 1.89
239 240 1.367346 TGGGCAACATCCTCCTGTAA 58.633 50.000 0.00 0.00 39.74 2.41
240 241 1.595311 ATGGGCAACATCCTCCTGTA 58.405 50.000 0.00 0.00 33.53 2.74
241 242 0.706433 AATGGGCAACATCCTCCTGT 59.294 50.000 0.00 0.00 39.40 4.00
242 243 1.064166 AGAATGGGCAACATCCTCCTG 60.064 52.381 0.00 0.00 39.40 3.86
243 244 1.302907 AGAATGGGCAACATCCTCCT 58.697 50.000 0.00 0.00 39.40 3.69
244 245 2.856222 CTAGAATGGGCAACATCCTCC 58.144 52.381 0.00 0.00 39.40 4.30
245 246 2.225467 GCTAGAATGGGCAACATCCTC 58.775 52.381 0.00 0.00 39.40 3.71
246 247 1.133668 GGCTAGAATGGGCAACATCCT 60.134 52.381 0.00 0.00 43.33 3.24
247 248 1.322442 GGCTAGAATGGGCAACATCC 58.678 55.000 0.00 0.00 43.33 3.51
248 249 1.133668 AGGGCTAGAATGGGCAACATC 60.134 52.381 0.00 0.00 46.57 3.06
249 250 0.929244 AGGGCTAGAATGGGCAACAT 59.071 50.000 0.00 0.00 46.57 2.71
250 251 1.490490 CTAGGGCTAGAATGGGCAACA 59.510 52.381 0.00 0.00 46.57 3.33
251 252 1.768870 TCTAGGGCTAGAATGGGCAAC 59.231 52.381 0.00 0.00 46.57 4.17
252 253 2.190398 TCTAGGGCTAGAATGGGCAA 57.810 50.000 0.00 0.00 46.57 4.52
253 254 2.190398 TTCTAGGGCTAGAATGGGCA 57.810 50.000 0.00 0.00 46.57 5.36
274 275 3.131755 GGCTGGCTATGCTCTGAATTTTT 59.868 43.478 0.00 0.00 0.00 1.94
275 276 2.692041 GGCTGGCTATGCTCTGAATTTT 59.308 45.455 0.00 0.00 0.00 1.82
276 277 2.305009 GGCTGGCTATGCTCTGAATTT 58.695 47.619 0.00 0.00 0.00 1.82
277 278 1.478288 GGGCTGGCTATGCTCTGAATT 60.478 52.381 0.00 0.00 0.00 2.17
278 279 0.110104 GGGCTGGCTATGCTCTGAAT 59.890 55.000 0.00 0.00 0.00 2.57
279 280 1.273986 TGGGCTGGCTATGCTCTGAA 61.274 55.000 0.00 0.00 0.00 3.02
280 281 1.690283 TGGGCTGGCTATGCTCTGA 60.690 57.895 0.00 0.00 0.00 3.27
281 282 1.227883 CTGGGCTGGCTATGCTCTG 60.228 63.158 0.00 0.00 0.00 3.35
282 283 0.984961 TTCTGGGCTGGCTATGCTCT 60.985 55.000 0.00 0.00 0.00 4.09
283 284 0.107017 TTTCTGGGCTGGCTATGCTC 60.107 55.000 0.00 0.00 0.00 4.26
284 285 0.106819 CTTTCTGGGCTGGCTATGCT 60.107 55.000 0.00 0.00 0.00 3.79
285 286 1.732417 GCTTTCTGGGCTGGCTATGC 61.732 60.000 0.00 0.00 0.00 3.14
286 287 0.394762 TGCTTTCTGGGCTGGCTATG 60.395 55.000 0.00 0.00 0.00 2.23
287 288 0.106819 CTGCTTTCTGGGCTGGCTAT 60.107 55.000 0.00 0.00 0.00 2.97
288 289 1.300963 CTGCTTTCTGGGCTGGCTA 59.699 57.895 0.00 0.00 0.00 3.93
289 290 2.035312 CTGCTTTCTGGGCTGGCT 59.965 61.111 0.00 0.00 0.00 4.75
290 291 3.756727 GCTGCTTTCTGGGCTGGC 61.757 66.667 0.00 0.00 0.00 4.85
291 292 1.664321 GATGCTGCTTTCTGGGCTGG 61.664 60.000 0.00 0.00 0.00 4.85
292 293 0.963856 TGATGCTGCTTTCTGGGCTG 60.964 55.000 0.00 0.00 0.00 4.85
293 294 0.251474 TTGATGCTGCTTTCTGGGCT 60.251 50.000 0.00 0.00 0.00 5.19
294 295 0.108945 GTTGATGCTGCTTTCTGGGC 60.109 55.000 0.00 0.00 0.00 5.36
295 296 1.542492 AGTTGATGCTGCTTTCTGGG 58.458 50.000 0.00 0.00 0.00 4.45
296 297 3.755378 AGTTAGTTGATGCTGCTTTCTGG 59.245 43.478 0.00 0.00 0.00 3.86
297 298 5.368256 AAGTTAGTTGATGCTGCTTTCTG 57.632 39.130 0.00 0.00 0.00 3.02
298 299 6.094603 CCATAAGTTAGTTGATGCTGCTTTCT 59.905 38.462 0.00 0.00 0.00 2.52
299 300 6.127897 ACCATAAGTTAGTTGATGCTGCTTTC 60.128 38.462 0.00 0.00 0.00 2.62
300 301 5.711976 ACCATAAGTTAGTTGATGCTGCTTT 59.288 36.000 0.00 0.00 0.00 3.51
301 302 5.256474 ACCATAAGTTAGTTGATGCTGCTT 58.744 37.500 0.00 0.00 0.00 3.91
302 303 4.848357 ACCATAAGTTAGTTGATGCTGCT 58.152 39.130 0.00 0.00 0.00 4.24
303 304 4.635765 TGACCATAAGTTAGTTGATGCTGC 59.364 41.667 0.00 0.00 0.00 5.25
304 305 6.741992 TTGACCATAAGTTAGTTGATGCTG 57.258 37.500 0.00 0.00 0.00 4.41
305 306 7.944729 ATTTGACCATAAGTTAGTTGATGCT 57.055 32.000 0.00 0.00 0.00 3.79
306 307 9.722056 CTTATTTGACCATAAGTTAGTTGATGC 57.278 33.333 0.00 0.00 33.60 3.91
309 310 9.226606 CCACTTATTTGACCATAAGTTAGTTGA 57.773 33.333 3.78 0.00 44.30 3.18
310 311 8.458843 CCCACTTATTTGACCATAAGTTAGTTG 58.541 37.037 3.78 0.00 44.30 3.16
311 312 7.614192 CCCCACTTATTTGACCATAAGTTAGTT 59.386 37.037 3.78 0.00 44.30 2.24
312 313 7.037153 TCCCCACTTATTTGACCATAAGTTAGT 60.037 37.037 3.78 0.00 44.30 2.24
313 314 7.282450 GTCCCCACTTATTTGACCATAAGTTAG 59.718 40.741 3.78 0.32 44.30 2.34
314 315 7.114095 GTCCCCACTTATTTGACCATAAGTTA 58.886 38.462 3.78 0.00 44.30 2.24
315 316 5.949952 GTCCCCACTTATTTGACCATAAGTT 59.050 40.000 3.78 0.00 44.30 2.66
316 317 5.014755 TGTCCCCACTTATTTGACCATAAGT 59.985 40.000 1.05 1.05 46.56 2.24
317 318 5.505780 TGTCCCCACTTATTTGACCATAAG 58.494 41.667 0.00 0.00 41.03 1.73
318 319 5.522315 TGTCCCCACTTATTTGACCATAA 57.478 39.130 0.00 0.00 0.00 1.90
319 320 5.505780 CTTGTCCCCACTTATTTGACCATA 58.494 41.667 0.00 0.00 0.00 2.74
320 321 4.344104 CTTGTCCCCACTTATTTGACCAT 58.656 43.478 0.00 0.00 0.00 3.55
321 322 3.499563 CCTTGTCCCCACTTATTTGACCA 60.500 47.826 0.00 0.00 0.00 4.02
322 323 3.089284 CCTTGTCCCCACTTATTTGACC 58.911 50.000 0.00 0.00 0.00 4.02
323 324 3.089284 CCCTTGTCCCCACTTATTTGAC 58.911 50.000 0.00 0.00 0.00 3.18
324 325 2.556559 GCCCTTGTCCCCACTTATTTGA 60.557 50.000 0.00 0.00 0.00 2.69
325 326 1.824852 GCCCTTGTCCCCACTTATTTG 59.175 52.381 0.00 0.00 0.00 2.32
326 327 1.615919 CGCCCTTGTCCCCACTTATTT 60.616 52.381 0.00 0.00 0.00 1.40
327 328 0.034477 CGCCCTTGTCCCCACTTATT 60.034 55.000 0.00 0.00 0.00 1.40
328 329 1.607612 CGCCCTTGTCCCCACTTAT 59.392 57.895 0.00 0.00 0.00 1.73
329 330 2.598787 CCGCCCTTGTCCCCACTTA 61.599 63.158 0.00 0.00 0.00 2.24
330 331 3.966543 CCGCCCTTGTCCCCACTT 61.967 66.667 0.00 0.00 0.00 3.16
335 336 4.344865 TTCAGCCGCCCTTGTCCC 62.345 66.667 0.00 0.00 0.00 4.46
336 337 3.056328 GTTCAGCCGCCCTTGTCC 61.056 66.667 0.00 0.00 0.00 4.02
337 338 2.281484 TGTTCAGCCGCCCTTGTC 60.281 61.111 0.00 0.00 0.00 3.18
338 339 2.281761 CTGTTCAGCCGCCCTTGT 60.282 61.111 0.00 0.00 0.00 3.16
339 340 1.600636 TTCTGTTCAGCCGCCCTTG 60.601 57.895 0.00 0.00 0.00 3.61
340 341 1.600916 GTTCTGTTCAGCCGCCCTT 60.601 57.895 0.00 0.00 0.00 3.95
341 342 2.032681 GTTCTGTTCAGCCGCCCT 59.967 61.111 0.00 0.00 0.00 5.19
342 343 1.452145 TTTGTTCTGTTCAGCCGCCC 61.452 55.000 0.00 0.00 0.00 6.13
343 344 0.383949 TTTTGTTCTGTTCAGCCGCC 59.616 50.000 0.00 0.00 0.00 6.13
344 345 2.422276 ATTTTGTTCTGTTCAGCCGC 57.578 45.000 0.00 0.00 0.00 6.53
345 346 2.472488 GCAATTTTGTTCTGTTCAGCCG 59.528 45.455 0.00 0.00 0.00 5.52
346 347 2.802247 GGCAATTTTGTTCTGTTCAGCC 59.198 45.455 0.00 0.00 0.00 4.85
347 348 2.802247 GGGCAATTTTGTTCTGTTCAGC 59.198 45.455 0.00 0.00 0.00 4.26
348 349 4.057406 TGGGCAATTTTGTTCTGTTCAG 57.943 40.909 0.00 0.00 0.00 3.02
349 350 4.478206 TTGGGCAATTTTGTTCTGTTCA 57.522 36.364 0.00 0.00 0.00 3.18
350 351 5.809719 TTTTGGGCAATTTTGTTCTGTTC 57.190 34.783 0.00 0.00 0.00 3.18
351 352 5.474876 TGTTTTTGGGCAATTTTGTTCTGTT 59.525 32.000 0.00 0.00 0.00 3.16
352 353 5.006386 TGTTTTTGGGCAATTTTGTTCTGT 58.994 33.333 0.00 0.00 0.00 3.41
353 354 5.557891 TGTTTTTGGGCAATTTTGTTCTG 57.442 34.783 0.00 0.00 0.00 3.02
354 355 6.581171 TTTGTTTTTGGGCAATTTTGTTCT 57.419 29.167 0.00 0.00 0.00 3.01
355 356 7.824704 ATTTTGTTTTTGGGCAATTTTGTTC 57.175 28.000 0.00 0.00 0.00 3.18
356 357 7.360691 GCAATTTTGTTTTTGGGCAATTTTGTT 60.361 29.630 0.00 0.00 0.00 2.83
357 358 6.091849 GCAATTTTGTTTTTGGGCAATTTTGT 59.908 30.769 0.00 0.00 0.00 2.83
358 359 6.091713 TGCAATTTTGTTTTTGGGCAATTTTG 59.908 30.769 0.00 0.00 0.00 2.44
359 360 6.091849 GTGCAATTTTGTTTTTGGGCAATTTT 59.908 30.769 0.00 0.00 0.00 1.82
360 361 5.579904 GTGCAATTTTGTTTTTGGGCAATTT 59.420 32.000 0.00 0.00 0.00 1.82
361 362 5.107824 GTGCAATTTTGTTTTTGGGCAATT 58.892 33.333 0.00 0.00 0.00 2.32
362 363 4.159135 TGTGCAATTTTGTTTTTGGGCAAT 59.841 33.333 0.00 0.00 0.00 3.56
363 364 3.507233 TGTGCAATTTTGTTTTTGGGCAA 59.493 34.783 0.00 0.00 0.00 4.52
364 365 3.084039 TGTGCAATTTTGTTTTTGGGCA 58.916 36.364 0.00 0.00 0.00 5.36
365 366 3.433709 GTGTGCAATTTTGTTTTTGGGC 58.566 40.909 0.00 0.00 0.00 5.36
366 367 3.486542 CGGTGTGCAATTTTGTTTTTGGG 60.487 43.478 0.00 0.00 0.00 4.12
367 368 3.486542 CCGGTGTGCAATTTTGTTTTTGG 60.487 43.478 0.00 0.00 0.00 3.28
368 369 3.678662 CCGGTGTGCAATTTTGTTTTTG 58.321 40.909 0.00 0.00 0.00 2.44
369 370 2.096657 GCCGGTGTGCAATTTTGTTTTT 59.903 40.909 1.90 0.00 0.00 1.94
370 371 1.668237 GCCGGTGTGCAATTTTGTTTT 59.332 42.857 1.90 0.00 0.00 2.43
371 372 1.294857 GCCGGTGTGCAATTTTGTTT 58.705 45.000 1.90 0.00 0.00 2.83
372 373 0.873743 CGCCGGTGTGCAATTTTGTT 60.874 50.000 6.91 0.00 0.00 2.83
373 374 1.299773 CGCCGGTGTGCAATTTTGT 60.300 52.632 6.91 0.00 0.00 2.83
374 375 1.007964 TCGCCGGTGTGCAATTTTG 60.008 52.632 16.01 0.00 0.00 2.44
375 376 1.007849 GTCGCCGGTGTGCAATTTT 60.008 52.632 16.01 0.00 0.00 1.82
376 377 2.642700 GTCGCCGGTGTGCAATTT 59.357 55.556 16.01 0.00 0.00 1.82
377 378 3.361977 GGTCGCCGGTGTGCAATT 61.362 61.111 16.01 0.00 0.00 2.32
417 418 3.333189 CATCGACGGGCGCATCAG 61.333 66.667 10.83 0.00 40.61 2.90
423 424 3.168237 GATTTGGCATCGACGGGCG 62.168 63.158 0.00 0.00 42.69 6.13
424 425 2.715624 GATTTGGCATCGACGGGC 59.284 61.111 5.62 5.62 0.00 6.13
425 426 2.186826 GGGATTTGGCATCGACGGG 61.187 63.158 0.00 0.00 0.00 5.28
426 427 2.534019 CGGGATTTGGCATCGACGG 61.534 63.158 0.00 0.00 0.00 4.79
427 428 0.880278 ATCGGGATTTGGCATCGACG 60.880 55.000 0.00 0.00 32.60 5.12
428 429 0.868406 GATCGGGATTTGGCATCGAC 59.132 55.000 0.00 0.00 32.60 4.20
429 430 0.599991 CGATCGGGATTTGGCATCGA 60.600 55.000 7.38 0.00 38.92 3.59
430 431 0.599991 TCGATCGGGATTTGGCATCG 60.600 55.000 16.41 0.00 38.14 3.84
431 432 1.813513 ATCGATCGGGATTTGGCATC 58.186 50.000 16.41 0.00 0.00 3.91
432 433 2.276732 AATCGATCGGGATTTGGCAT 57.723 45.000 16.41 0.00 32.89 4.40
433 434 2.051334 AAATCGATCGGGATTTGGCA 57.949 45.000 16.41 0.00 43.16 4.92
434 435 2.357637 TCAAAATCGATCGGGATTTGGC 59.642 45.455 25.98 0.00 43.81 4.52
435 436 3.548818 GCTCAAAATCGATCGGGATTTGG 60.549 47.826 25.98 18.86 43.81 3.28
436 437 3.548818 GGCTCAAAATCGATCGGGATTTG 60.549 47.826 23.23 23.23 43.81 2.32
437 438 2.618709 GGCTCAAAATCGATCGGGATTT 59.381 45.455 16.41 11.82 45.87 2.17
438 439 2.222027 GGCTCAAAATCGATCGGGATT 58.778 47.619 16.41 5.71 38.24 3.01
439 440 1.140852 TGGCTCAAAATCGATCGGGAT 59.859 47.619 16.41 0.00 0.00 3.85
440 441 0.539518 TGGCTCAAAATCGATCGGGA 59.460 50.000 16.41 0.00 0.00 5.14
441 442 0.940126 CTGGCTCAAAATCGATCGGG 59.060 55.000 16.41 0.44 0.00 5.14
442 443 1.863454 CTCTGGCTCAAAATCGATCGG 59.137 52.381 16.41 0.00 0.00 4.18
443 444 1.863454 CCTCTGGCTCAAAATCGATCG 59.137 52.381 9.36 9.36 0.00 3.69
444 445 3.185246 TCCTCTGGCTCAAAATCGATC 57.815 47.619 0.00 0.00 0.00 3.69
445 446 3.634397 TTCCTCTGGCTCAAAATCGAT 57.366 42.857 0.00 0.00 0.00 3.59
446 447 3.055167 TGATTCCTCTGGCTCAAAATCGA 60.055 43.478 0.00 0.00 0.00 3.59
447 448 3.064545 GTGATTCCTCTGGCTCAAAATCG 59.935 47.826 0.00 0.00 0.00 3.34
448 449 4.012374 TGTGATTCCTCTGGCTCAAAATC 58.988 43.478 0.00 0.00 0.00 2.17
449 450 4.038271 TGTGATTCCTCTGGCTCAAAAT 57.962 40.909 0.00 0.00 0.00 1.82
450 451 3.507162 TGTGATTCCTCTGGCTCAAAA 57.493 42.857 0.00 0.00 0.00 2.44
451 452 3.415212 CTTGTGATTCCTCTGGCTCAAA 58.585 45.455 0.00 0.00 0.00 2.69
452 453 2.877300 GCTTGTGATTCCTCTGGCTCAA 60.877 50.000 0.00 0.00 0.00 3.02
453 454 1.339438 GCTTGTGATTCCTCTGGCTCA 60.339 52.381 0.00 0.00 0.00 4.26
454 455 1.377536 GCTTGTGATTCCTCTGGCTC 58.622 55.000 0.00 0.00 0.00 4.70
455 456 0.034670 GGCTTGTGATTCCTCTGGCT 60.035 55.000 0.00 0.00 0.00 4.75
456 457 0.034670 AGGCTTGTGATTCCTCTGGC 60.035 55.000 0.00 0.00 0.00 4.85
457 458 1.407989 GGAGGCTTGTGATTCCTCTGG 60.408 57.143 7.36 0.00 44.39 3.86
458 459 1.280133 TGGAGGCTTGTGATTCCTCTG 59.720 52.381 7.36 0.00 44.39 3.35
459 460 1.661463 TGGAGGCTTGTGATTCCTCT 58.339 50.000 7.36 0.00 44.39 3.69
460 461 2.570135 GATGGAGGCTTGTGATTCCTC 58.430 52.381 0.00 0.00 44.28 3.71
461 462 1.134280 CGATGGAGGCTTGTGATTCCT 60.134 52.381 0.00 0.00 0.00 3.36
462 463 1.303309 CGATGGAGGCTTGTGATTCC 58.697 55.000 0.00 0.00 0.00 3.01
463 464 0.659957 GCGATGGAGGCTTGTGATTC 59.340 55.000 0.00 0.00 0.00 2.52
464 465 0.749454 GGCGATGGAGGCTTGTGATT 60.749 55.000 0.00 0.00 0.00 2.57
465 466 1.153086 GGCGATGGAGGCTTGTGAT 60.153 57.895 0.00 0.00 0.00 3.06
466 467 1.913951 ATGGCGATGGAGGCTTGTGA 61.914 55.000 0.00 0.00 37.59 3.58
467 468 1.442526 GATGGCGATGGAGGCTTGTG 61.443 60.000 0.00 0.00 37.59 3.33
468 469 1.153086 GATGGCGATGGAGGCTTGT 60.153 57.895 0.00 0.00 37.59 3.16
469 470 2.249535 CGATGGCGATGGAGGCTTG 61.250 63.158 0.00 0.00 40.82 4.01
470 471 2.109799 CGATGGCGATGGAGGCTT 59.890 61.111 0.00 0.00 40.82 4.35
471 472 2.839632 TCGATGGCGATGGAGGCT 60.840 61.111 0.00 0.00 42.51 4.58
480 481 1.527433 TAGGGAGAGCATCGATGGCG 61.527 60.000 26.00 1.96 42.67 5.69
481 482 0.246086 CTAGGGAGAGCATCGATGGC 59.754 60.000 26.00 17.68 42.67 4.40
482 483 1.626686 ACTAGGGAGAGCATCGATGG 58.373 55.000 26.00 9.00 42.67 3.51
483 484 3.366883 GCTAACTAGGGAGAGCATCGATG 60.367 52.174 21.27 21.27 42.67 3.84
484 485 2.823154 GCTAACTAGGGAGAGCATCGAT 59.177 50.000 0.00 0.00 42.67 3.59
485 486 2.231529 GCTAACTAGGGAGAGCATCGA 58.768 52.381 0.00 0.00 42.67 3.59
486 487 1.957177 TGCTAACTAGGGAGAGCATCG 59.043 52.381 6.16 0.00 39.93 3.84
490 491 4.320641 CGTTAGATGCTAACTAGGGAGAGC 60.321 50.000 13.54 0.00 35.43 4.09
491 492 4.216687 CCGTTAGATGCTAACTAGGGAGAG 59.783 50.000 13.54 0.00 0.00 3.20
492 493 4.142790 CCGTTAGATGCTAACTAGGGAGA 58.857 47.826 13.54 0.00 0.00 3.71
493 494 3.305471 GCCGTTAGATGCTAACTAGGGAG 60.305 52.174 13.54 0.00 0.00 4.30
494 495 2.626743 GCCGTTAGATGCTAACTAGGGA 59.373 50.000 13.54 0.00 0.00 4.20
963 965 5.833667 AGATGTGGTTATCCAGTATCGAGAA 59.166 40.000 0.00 0.00 45.24 2.87
964 966 5.386060 AGATGTGGTTATCCAGTATCGAGA 58.614 41.667 0.00 0.00 45.24 4.04
965 967 5.336055 GGAGATGTGGTTATCCAGTATCGAG 60.336 48.000 0.00 0.00 45.24 4.04
966 968 4.523173 GGAGATGTGGTTATCCAGTATCGA 59.477 45.833 0.00 0.00 45.24 3.59
967 969 4.616143 CGGAGATGTGGTTATCCAGTATCG 60.616 50.000 0.00 0.00 45.24 2.92
968 970 4.281182 ACGGAGATGTGGTTATCCAGTATC 59.719 45.833 0.00 1.47 45.24 2.24
969 971 4.223953 ACGGAGATGTGGTTATCCAGTAT 58.776 43.478 0.00 0.00 45.24 2.12
970 972 3.635373 GACGGAGATGTGGTTATCCAGTA 59.365 47.826 0.00 0.00 45.24 2.74
971 973 2.431057 GACGGAGATGTGGTTATCCAGT 59.569 50.000 0.00 0.00 45.24 4.00
972 974 2.543861 CGACGGAGATGTGGTTATCCAG 60.544 54.545 0.00 0.00 45.24 3.86
982 984 1.323271 ATGGTGCTCGACGGAGATGT 61.323 55.000 0.00 0.00 43.27 3.06
1084 1098 1.290134 GTTGTGAGGGGGAAGGAGAT 58.710 55.000 0.00 0.00 0.00 2.75
1592 1625 4.516195 GGAACTCGAGGAGCGGCC 62.516 72.222 18.41 4.67 41.33 6.13
1667 1700 1.071567 GACGACGCTGTAGGTGAAGC 61.072 60.000 0.00 0.00 36.03 3.86
1851 1884 0.443869 CGATCGGAAGCACCTTGTTG 59.556 55.000 7.38 0.00 36.31 3.33
1938 1973 1.379044 CACCCTGATGAACCTGGGC 60.379 63.158 0.00 0.00 45.92 5.36
2022 2057 4.514577 AACTCGGCGGCATCCTCG 62.515 66.667 10.53 0.00 0.00 4.63
2061 2096 4.862092 AGCATGCTCTCCGACGCG 62.862 66.667 16.30 3.53 0.00 6.01
2079 2115 2.501610 GTCTCGGGATCCAGCACC 59.498 66.667 15.23 0.00 0.00 5.01
2136 2172 2.049063 AAGTGCTCGAGCGTGTCC 60.049 61.111 30.75 16.12 45.83 4.02
2249 2286 3.882888 CCTCACTACACTCTTGGCAAAAA 59.117 43.478 0.00 0.00 0.00 1.94
2267 2304 9.706691 CAAAACTTATAAGTCTCACTTACCTCA 57.293 33.333 18.28 0.00 42.78 3.86
2284 2321 6.528774 GGAAACACAAACGTGTCAAAACTTAT 59.471 34.615 0.00 0.00 46.95 1.73
2286 2323 4.682401 GGAAACACAAACGTGTCAAAACTT 59.318 37.500 0.00 0.00 46.95 2.66
2397 2969 6.265196 TGGCATGTCAGTAAAAAGTTCAGAAT 59.735 34.615 0.00 0.00 0.00 2.40
2404 2976 5.451798 CCAGTTTGGCATGTCAGTAAAAAGT 60.452 40.000 0.00 0.00 0.00 2.66
2405 2977 4.984161 CCAGTTTGGCATGTCAGTAAAAAG 59.016 41.667 0.00 0.00 0.00 2.27
2413 2985 1.143889 TGGTACCAGTTTGGCATGTCA 59.856 47.619 11.60 0.00 42.67 3.58
2414 2986 1.904287 TGGTACCAGTTTGGCATGTC 58.096 50.000 11.60 0.00 42.67 3.06
2453 3026 0.979665 TGGAGACAAAGAGAGCCCTG 59.020 55.000 0.00 0.00 37.44 4.45
2458 3031 1.401670 CGTCGGTGGAGACAAAGAGAG 60.402 57.143 0.00 0.00 46.06 3.20
2459 3032 0.596577 CGTCGGTGGAGACAAAGAGA 59.403 55.000 0.00 0.00 46.06 3.10
2460 3033 1.009389 GCGTCGGTGGAGACAAAGAG 61.009 60.000 0.00 0.00 46.06 2.85
2462 3035 2.027625 GGCGTCGGTGGAGACAAAG 61.028 63.158 0.00 0.00 46.06 2.77
2463 3036 2.029964 GGCGTCGGTGGAGACAAA 59.970 61.111 0.00 0.00 46.06 2.83
2470 3045 2.507110 ATCAAGTGAGGCGTCGGTGG 62.507 60.000 1.39 0.00 0.00 4.61
2475 3050 2.363788 TGTACATCAAGTGAGGCGTC 57.636 50.000 0.00 0.00 0.00 5.19
2512 3087 3.403038 AGTTCACCTTGTGCAGTGATAC 58.597 45.455 7.28 8.46 42.32 2.24
2528 3103 2.360844 TCACTTCCGCAACAAAGTTCA 58.639 42.857 0.00 0.00 33.53 3.18
2564 3139 6.350445 GCTCATGTTGTTCATCTTATTTGGGT 60.350 38.462 0.00 0.00 34.09 4.51
2653 3230 8.856103 CCATATTAGGTGGGACGAAAATAAAAT 58.144 33.333 0.00 0.00 32.98 1.82
2737 3315 1.067000 TCGATCGCGGGGTTTTTCTTA 60.067 47.619 11.09 0.00 38.28 2.10
2740 3318 1.017701 ACTCGATCGCGGGGTTTTTC 61.018 55.000 11.09 0.00 43.99 2.29
2741 3319 1.004200 ACTCGATCGCGGGGTTTTT 60.004 52.632 11.09 0.00 43.99 1.94
2817 3395 5.220624 GGTTAATTTTCGCCGGTTTGTTTTT 60.221 36.000 1.90 0.00 0.00 1.94
2845 3423 7.148573 TGCGTGTGATTTGTTTGTGTTATTTTT 60.149 29.630 0.00 0.00 0.00 1.94
2850 3428 4.346970 CTGCGTGTGATTTGTTTGTGTTA 58.653 39.130 0.00 0.00 0.00 2.41
2865 3443 4.657824 CCCGTCGAACCTGCGTGT 62.658 66.667 0.00 0.00 0.00 4.49
2949 3527 2.519780 GCTCCCTCGGATCTCGGT 60.520 66.667 0.00 0.00 39.77 4.69
2975 3554 4.816984 GCTCCTCCCGGACCTCGA 62.817 72.222 0.73 0.00 42.43 4.04
3001 3580 2.647158 GCGGAGGAGGAAGACGGTT 61.647 63.158 0.00 0.00 0.00 4.44
3160 3739 4.502259 CGAACCAGAAATAGAGAGGGATGG 60.502 50.000 0.00 0.00 0.00 3.51
3184 3763 1.265454 GGAAAAGGGAGAGAGGCCGA 61.265 60.000 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.