Multiple sequence alignment - TraesCS6B01G447200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G447200 chr6B 100.000 4981 0 0 1 4981 707942869 707937889 0.000000e+00 9199.0
1 TraesCS6B01G447200 chr6B 92.212 2170 134 11 1872 4022 707391477 707389324 0.000000e+00 3038.0
2 TraesCS6B01G447200 chr6B 88.858 2145 193 17 1876 4012 707839749 707837643 0.000000e+00 2595.0
3 TraesCS6B01G447200 chr6B 86.853 2107 234 22 1876 3974 707911869 707909798 0.000000e+00 2316.0
4 TraesCS6B01G447200 chr6B 90.209 1052 78 8 196 1223 707960234 707959184 0.000000e+00 1349.0
5 TraesCS6B01G447200 chr6B 87.714 993 106 6 400 1378 707392904 707391914 0.000000e+00 1144.0
6 TraesCS6B01G447200 chr6B 83.877 1104 144 12 192 1264 707793812 707792712 0.000000e+00 1022.0
7 TraesCS6B01G447200 chr6B 82.447 997 156 14 284 1265 707917463 707916471 0.000000e+00 854.0
8 TraesCS6B01G447200 chr6B 85.240 603 87 2 623 1223 707845177 707844575 1.970000e-173 619.0
9 TraesCS6B01G447200 chr6B 85.260 597 75 5 679 1264 707729067 707728473 1.980000e-168 603.0
10 TraesCS6B01G447200 chr6B 92.901 324 20 3 1408 1730 707391924 707391603 7.550000e-128 468.0
11 TraesCS6B01G447200 chr6B 80.998 621 78 24 4063 4660 707719405 707718802 1.630000e-124 457.0
12 TraesCS6B01G447200 chr6B 86.175 434 36 14 3609 4039 707719877 707719465 9.840000e-122 448.0
13 TraesCS6B01G447200 chr6B 84.615 338 40 5 4325 4660 707837261 707836934 4.810000e-85 326.0
14 TraesCS6B01G447200 chr6B 85.714 287 27 9 4661 4945 707836879 707836605 1.750000e-74 291.0
15 TraesCS6B01G447200 chr6B 82.374 278 15 13 4118 4361 707837544 707837267 1.400000e-50 211.0
16 TraesCS6B01G447200 chr6B 90.411 73 5 2 4051 4123 707389268 707389198 1.480000e-15 95.3
17 TraesCS6B01G447200 chr6B 100.000 38 0 0 4412 4449 707718990 707718953 2.490000e-08 71.3
18 TraesCS6B01G447200 chr6B 100.000 37 0 0 4412 4448 707938398 707938362 8.950000e-08 69.4
19 TraesCS6B01G447200 chr6B 97.368 38 1 0 4412 4449 707837119 707837082 1.160000e-06 65.8
20 TraesCS6B01G447200 chr6A 92.265 2172 148 10 1872 4039 610801855 610799700 0.000000e+00 3062.0
21 TraesCS6B01G447200 chr6A 88.230 2158 227 15 1889 4037 610654613 610652474 0.000000e+00 2553.0
22 TraesCS6B01G447200 chr6A 87.963 2160 227 14 1891 4041 610669024 610666889 0.000000e+00 2518.0
23 TraesCS6B01G447200 chr6A 86.979 1344 133 22 400 1729 610803298 610801983 0.000000e+00 1474.0
24 TraesCS6B01G447200 chr6A 82.550 1106 147 16 192 1264 610597605 610596513 0.000000e+00 931.0
25 TraesCS6B01G447200 chr6A 82.531 956 152 8 323 1264 610670624 610669670 0.000000e+00 826.0
26 TraesCS6B01G447200 chr6A 79.385 781 85 41 4060 4781 610591925 610591162 9.700000e-132 481.0
27 TraesCS6B01G447200 chr6A 87.361 269 20 5 4052 4306 610799636 610799368 3.770000e-76 296.0
28 TraesCS6B01G447200 chr6A 85.542 166 14 3 4445 4603 610651880 610651718 1.110000e-36 165.0
29 TraesCS6B01G447200 chr6A 80.085 236 21 7 4445 4661 610799282 610799054 8.640000e-33 152.0
30 TraesCS6B01G447200 chr6A 89.899 99 9 1 1732 1830 610801943 610801846 5.230000e-25 126.0
31 TraesCS6B01G447200 chr6A 91.549 71 6 0 4593 4663 610650105 610650035 1.140000e-16 99.0
32 TraesCS6B01G447200 chr6A 97.368 38 1 0 4412 4449 610651849 610651812 1.160000e-06 65.8
33 TraesCS6B01G447200 chr6A 94.286 35 0 1 4422 4454 610591486 610591452 9.000000e-03 52.8
34 TraesCS6B01G447200 chr6D 91.373 2156 162 13 1887 4035 464060487 464058349 0.000000e+00 2929.0
35 TraesCS6B01G447200 chr6D 86.737 1131 124 13 284 1390 464177759 464176631 0.000000e+00 1234.0
36 TraesCS6B01G447200 chr6D 83.225 924 137 10 354 1264 464063920 464063002 0.000000e+00 832.0
37 TraesCS6B01G447200 chr6D 82.297 627 62 16 4060 4663 464058282 464057682 9.630000e-137 497.0
38 TraesCS6B01G447200 chr6D 85.714 329 25 7 1397 1718 464176652 464176339 1.340000e-85 327.0
39 TraesCS6B01G447200 chrUn 91.160 2172 153 16 1872 4022 269564620 269566773 0.000000e+00 2911.0
40 TraesCS6B01G447200 chrUn 89.124 2170 200 19 1878 4039 246505584 246507725 0.000000e+00 2667.0
41 TraesCS6B01G447200 chrUn 89.078 2170 201 19 1878 4039 241206004 241208145 0.000000e+00 2662.0
42 TraesCS6B01G447200 chrUn 85.871 1097 119 15 201 1264 241197830 241198923 0.000000e+00 1134.0
43 TraesCS6B01G447200 chrUn 86.414 1001 99 17 201 1165 413962420 413963419 0.000000e+00 1061.0
44 TraesCS6B01G447200 chrUn 80.676 621 80 24 4063 4660 246507785 246508388 3.540000e-121 446.0
45 TraesCS6B01G447200 chrUn 86.392 316 35 3 4346 4660 339582295 339582603 6.180000e-89 339.0
46 TraesCS6B01G447200 chrUn 91.949 236 17 2 1495 1730 269564261 269564494 3.720000e-86 329.0
47 TraesCS6B01G447200 chrUn 90.411 73 5 2 4051 4123 269566829 269566899 1.480000e-15 95.3
48 TraesCS6B01G447200 chrUn 100.000 38 0 0 4412 4449 246508200 246508237 2.490000e-08 71.3
49 TraesCS6B01G447200 chrUn 100.000 38 0 0 4412 4449 339582415 339582452 2.490000e-08 71.3
50 TraesCS6B01G447200 chr4B 76.293 232 34 4 4447 4660 260119470 260119242 2.450000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G447200 chr6B 707937889 707942869 4980 True 9199.000000 9199 100.000000 1 4981 1 chr6B.!!$R6 4980
1 TraesCS6B01G447200 chr6B 707909798 707911869 2071 True 2316.000000 2316 86.853000 1876 3974 1 chr6B.!!$R4 2098
2 TraesCS6B01G447200 chr6B 707959184 707960234 1050 True 1349.000000 1349 90.209000 196 1223 1 chr6B.!!$R8 1027
3 TraesCS6B01G447200 chr6B 707389198 707392904 3706 True 1186.325000 3038 90.809500 400 4123 4 chr6B.!!$R9 3723
4 TraesCS6B01G447200 chr6B 707792712 707793812 1100 True 1022.000000 1022 83.877000 192 1264 1 chr6B.!!$R2 1072
5 TraesCS6B01G447200 chr6B 707916471 707917463 992 True 854.000000 854 82.447000 284 1265 1 chr6B.!!$R5 981
6 TraesCS6B01G447200 chr6B 707836605 707839749 3144 True 697.760000 2595 87.785800 1876 4945 5 chr6B.!!$R11 3069
7 TraesCS6B01G447200 chr6B 707844575 707845177 602 True 619.000000 619 85.240000 623 1223 1 chr6B.!!$R3 600
8 TraesCS6B01G447200 chr6B 707728473 707729067 594 True 603.000000 603 85.260000 679 1264 1 chr6B.!!$R1 585
9 TraesCS6B01G447200 chr6B 707718802 707719877 1075 True 325.433333 457 89.057667 3609 4660 3 chr6B.!!$R10 1051
10 TraesCS6B01G447200 chr6A 610666889 610670624 3735 True 1672.000000 2518 85.247000 323 4041 2 chr6A.!!$R4 3718
11 TraesCS6B01G447200 chr6A 610799054 610803298 4244 True 1022.000000 3062 87.317800 400 4661 5 chr6A.!!$R5 4261
12 TraesCS6B01G447200 chr6A 610596513 610597605 1092 True 931.000000 931 82.550000 192 1264 1 chr6A.!!$R1 1072
13 TraesCS6B01G447200 chr6A 610650035 610654613 4578 True 720.700000 2553 90.672250 1889 4663 4 chr6A.!!$R3 2774
14 TraesCS6B01G447200 chr6A 610591162 610591925 763 True 266.900000 481 86.835500 4060 4781 2 chr6A.!!$R2 721
15 TraesCS6B01G447200 chr6D 464057682 464063920 6238 True 1419.333333 2929 85.631667 354 4663 3 chr6D.!!$R1 4309
16 TraesCS6B01G447200 chr6D 464176339 464177759 1420 True 780.500000 1234 86.225500 284 1718 2 chr6D.!!$R2 1434
17 TraesCS6B01G447200 chrUn 241206004 241208145 2141 False 2662.000000 2662 89.078000 1878 4039 1 chrUn.!!$F2 2161
18 TraesCS6B01G447200 chrUn 241197830 241198923 1093 False 1134.000000 1134 85.871000 201 1264 1 chrUn.!!$F1 1063
19 TraesCS6B01G447200 chrUn 269564261 269566899 2638 False 1111.766667 2911 91.173333 1495 4123 3 chrUn.!!$F5 2628
20 TraesCS6B01G447200 chrUn 246505584 246508388 2804 False 1061.433333 2667 89.933333 1878 4660 3 chrUn.!!$F4 2782
21 TraesCS6B01G447200 chrUn 413962420 413963419 999 False 1061.000000 1061 86.414000 201 1165 1 chrUn.!!$F3 964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.035056 AGCTCATGAAACGGGGGAAG 60.035 55.0 0.0 0.0 0.00 3.46 F
1165 1243 0.034059 CGACACTGAAGCTGGGAGTT 59.966 55.0 0.0 0.0 0.00 3.01 F
1848 4057 0.110192 GGAGTGCAGCGTTTTAGTGC 60.110 55.0 0.0 0.0 37.73 4.40 F
1849 4058 0.110192 GAGTGCAGCGTTTTAGTGCC 60.110 55.0 0.0 0.0 36.31 5.01 F
1851 4060 0.385974 GTGCAGCGTTTTAGTGCCTG 60.386 55.0 0.0 0.0 36.31 4.85 F
2271 4487 0.393820 AAAATGTGCTGGGTTGCCTG 59.606 50.0 0.0 0.0 0.00 4.85 F
3492 5726 0.951040 GGTGGGCTCTCTTGTCAACG 60.951 60.0 0.0 0.0 0.00 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1829 4038 0.110192 GCACTAAAACGCTGCACTCC 60.110 55.000 0.00 0.00 0.00 3.85 R
2966 5182 1.556911 ACATGAAGGCTCAGGTACCTG 59.443 52.381 32.61 32.61 44.49 4.00 R
3492 5726 0.393808 TCAGGGCGTAATTTCTGGGC 60.394 55.000 0.00 0.00 0.00 5.36 R
3493 5727 2.348411 ATCAGGGCGTAATTTCTGGG 57.652 50.000 0.00 0.00 0.00 4.45 R
3807 6041 3.131577 TCAAAATCACCGCTAGTACCGAT 59.868 43.478 0.00 0.00 0.00 4.18 R
3933 6167 1.286880 GATGTGCGTTGGCTGCTTT 59.713 52.632 0.00 0.00 40.82 3.51 R
4568 7247 0.036164 TTGGTGTCATTCTCCCACGG 59.964 55.000 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.807538 TCGACGCGTAGGGAGCAC 61.808 66.667 13.97 0.00 46.37 4.40
18 19 3.812019 CGACGCGTAGGGAGCACT 61.812 66.667 13.97 0.00 46.37 4.40
19 20 2.202623 GACGCGTAGGGAGCACTG 60.203 66.667 13.97 0.00 46.37 3.66
20 21 4.436998 ACGCGTAGGGAGCACTGC 62.437 66.667 11.67 0.00 46.37 4.40
22 23 4.436998 GCGTAGGGAGCACTGCGT 62.437 66.667 11.62 0.00 46.20 5.24
23 24 2.202623 CGTAGGGAGCACTGCGTC 60.203 66.667 1.96 0.00 40.87 5.19
24 25 2.202623 GTAGGGAGCACTGCGTCG 60.203 66.667 0.00 0.00 0.00 5.12
25 26 2.675423 TAGGGAGCACTGCGTCGT 60.675 61.111 0.00 0.00 0.00 4.34
26 27 2.273179 TAGGGAGCACTGCGTCGTT 61.273 57.895 0.00 0.00 0.00 3.85
27 28 1.812686 TAGGGAGCACTGCGTCGTTT 61.813 55.000 0.00 0.00 0.00 3.60
28 29 2.668280 GGGAGCACTGCGTCGTTTC 61.668 63.158 0.00 0.00 0.00 2.78
29 30 2.465920 GAGCACTGCGTCGTTTCG 59.534 61.111 0.00 0.00 0.00 3.46
30 31 3.000080 GAGCACTGCGTCGTTTCGG 62.000 63.158 0.00 0.00 0.00 4.30
31 32 3.335534 GCACTGCGTCGTTTCGGT 61.336 61.111 0.00 0.00 0.00 4.69
32 33 2.844146 CACTGCGTCGTTTCGGTC 59.156 61.111 0.00 0.00 0.00 4.79
33 34 1.947146 CACTGCGTCGTTTCGGTCA 60.947 57.895 0.00 0.00 0.00 4.02
34 35 1.660575 ACTGCGTCGTTTCGGTCAG 60.661 57.895 0.00 0.00 0.00 3.51
35 36 1.371267 CTGCGTCGTTTCGGTCAGA 60.371 57.895 0.00 0.00 0.00 3.27
36 37 1.337817 CTGCGTCGTTTCGGTCAGAG 61.338 60.000 0.00 0.00 0.00 3.35
37 38 1.081641 GCGTCGTTTCGGTCAGAGA 60.082 57.895 0.00 0.00 0.00 3.10
38 39 0.456312 GCGTCGTTTCGGTCAGAGAT 60.456 55.000 0.00 0.00 0.00 2.75
39 40 1.202110 GCGTCGTTTCGGTCAGAGATA 60.202 52.381 0.00 0.00 0.00 1.98
40 41 2.730090 GCGTCGTTTCGGTCAGAGATAA 60.730 50.000 0.00 0.00 0.00 1.75
41 42 3.099362 CGTCGTTTCGGTCAGAGATAAG 58.901 50.000 0.00 0.00 0.00 1.73
42 43 3.425892 CGTCGTTTCGGTCAGAGATAAGT 60.426 47.826 0.00 0.00 0.00 2.24
43 44 3.852536 GTCGTTTCGGTCAGAGATAAGTG 59.147 47.826 0.00 0.00 0.00 3.16
44 45 2.599082 CGTTTCGGTCAGAGATAAGTGC 59.401 50.000 0.00 0.00 0.00 4.40
45 46 2.561733 TTCGGTCAGAGATAAGTGCG 57.438 50.000 0.00 0.00 0.00 5.34
46 47 0.100682 TCGGTCAGAGATAAGTGCGC 59.899 55.000 0.00 0.00 0.00 6.09
47 48 0.872021 CGGTCAGAGATAAGTGCGCC 60.872 60.000 4.18 0.00 0.00 6.53
48 49 0.175760 GGTCAGAGATAAGTGCGCCA 59.824 55.000 4.18 0.00 0.00 5.69
49 50 1.405526 GGTCAGAGATAAGTGCGCCAA 60.406 52.381 4.18 0.00 0.00 4.52
50 51 1.661112 GTCAGAGATAAGTGCGCCAAC 59.339 52.381 4.18 0.00 0.00 3.77
51 52 1.275010 TCAGAGATAAGTGCGCCAACA 59.725 47.619 4.18 0.00 0.00 3.33
52 53 2.076100 CAGAGATAAGTGCGCCAACAA 58.924 47.619 4.18 0.00 0.00 2.83
53 54 2.679837 CAGAGATAAGTGCGCCAACAAT 59.320 45.455 4.18 0.00 0.00 2.71
54 55 3.871006 CAGAGATAAGTGCGCCAACAATA 59.129 43.478 4.18 0.00 0.00 1.90
55 56 4.332543 CAGAGATAAGTGCGCCAACAATAA 59.667 41.667 4.18 0.00 0.00 1.40
56 57 4.941263 AGAGATAAGTGCGCCAACAATAAA 59.059 37.500 4.18 0.00 0.00 1.40
57 58 5.414454 AGAGATAAGTGCGCCAACAATAAAA 59.586 36.000 4.18 0.00 0.00 1.52
58 59 5.640732 AGATAAGTGCGCCAACAATAAAAG 58.359 37.500 4.18 0.00 0.00 2.27
59 60 5.414454 AGATAAGTGCGCCAACAATAAAAGA 59.586 36.000 4.18 0.00 0.00 2.52
60 61 4.314740 AAGTGCGCCAACAATAAAAGAA 57.685 36.364 4.18 0.00 0.00 2.52
61 62 3.900941 AGTGCGCCAACAATAAAAGAAG 58.099 40.909 4.18 0.00 0.00 2.85
62 63 2.408368 GTGCGCCAACAATAAAAGAAGC 59.592 45.455 4.18 0.00 0.00 3.86
63 64 2.035193 TGCGCCAACAATAAAAGAAGCA 59.965 40.909 4.18 0.00 0.00 3.91
64 65 3.253230 GCGCCAACAATAAAAGAAGCAT 58.747 40.909 0.00 0.00 0.00 3.79
65 66 3.061161 GCGCCAACAATAAAAGAAGCATG 59.939 43.478 0.00 0.00 0.00 4.06
66 67 4.236935 CGCCAACAATAAAAGAAGCATGT 58.763 39.130 0.00 0.00 0.00 3.21
67 68 5.398169 CGCCAACAATAAAAGAAGCATGTA 58.602 37.500 0.00 0.00 0.00 2.29
68 69 5.286082 CGCCAACAATAAAAGAAGCATGTAC 59.714 40.000 0.00 0.00 0.00 2.90
69 70 5.286082 GCCAACAATAAAAGAAGCATGTACG 59.714 40.000 0.00 0.00 0.00 3.67
70 71 6.378582 CCAACAATAAAAGAAGCATGTACGT 58.621 36.000 0.00 0.00 0.00 3.57
71 72 7.523219 CCAACAATAAAAGAAGCATGTACGTA 58.477 34.615 0.00 0.00 0.00 3.57
72 73 7.480542 CCAACAATAAAAGAAGCATGTACGTAC 59.519 37.037 18.90 18.90 0.00 3.67
73 74 6.758149 ACAATAAAAGAAGCATGTACGTACG 58.242 36.000 20.18 15.01 0.00 3.67
74 75 6.587226 ACAATAAAAGAAGCATGTACGTACGA 59.413 34.615 24.41 10.29 0.00 3.43
75 76 7.116662 ACAATAAAAGAAGCATGTACGTACGAA 59.883 33.333 24.41 7.42 0.00 3.85
76 77 4.898328 AAAGAAGCATGTACGTACGAAC 57.102 40.909 24.41 11.65 0.00 3.95
77 78 3.564235 AGAAGCATGTACGTACGAACA 57.436 42.857 24.41 6.28 0.00 3.18
78 79 3.904571 AGAAGCATGTACGTACGAACAA 58.095 40.909 24.41 4.68 0.00 2.83
79 80 3.918591 AGAAGCATGTACGTACGAACAAG 59.081 43.478 24.41 9.66 0.00 3.16
80 81 3.564235 AGCATGTACGTACGAACAAGA 57.436 42.857 24.41 3.17 0.00 3.02
81 82 3.904571 AGCATGTACGTACGAACAAGAA 58.095 40.909 24.41 0.93 0.00 2.52
82 83 4.300803 AGCATGTACGTACGAACAAGAAA 58.699 39.130 24.41 0.19 0.00 2.52
83 84 4.746115 AGCATGTACGTACGAACAAGAAAA 59.254 37.500 24.41 0.00 0.00 2.29
84 85 4.837050 GCATGTACGTACGAACAAGAAAAC 59.163 41.667 24.41 6.00 0.00 2.43
85 86 5.556758 GCATGTACGTACGAACAAGAAAACA 60.557 40.000 24.41 11.00 0.00 2.83
86 87 6.586751 CATGTACGTACGAACAAGAAAACAT 58.413 36.000 24.41 12.58 0.00 2.71
87 88 5.965202 TGTACGTACGAACAAGAAAACATG 58.035 37.500 24.41 0.00 0.00 3.21
88 89 5.519566 TGTACGTACGAACAAGAAAACATGT 59.480 36.000 24.41 0.00 0.00 3.21
89 90 5.473796 ACGTACGAACAAGAAAACATGTT 57.526 34.783 24.41 4.92 42.18 2.71
90 91 5.871539 ACGTACGAACAAGAAAACATGTTT 58.128 33.333 24.41 18.13 39.73 2.83
91 92 5.735427 ACGTACGAACAAGAAAACATGTTTG 59.265 36.000 23.93 14.67 43.51 2.93
92 93 5.170625 CGTACGAACAAGAAAACATGTTTGG 59.829 40.000 23.93 15.56 42.62 3.28
93 94 5.066968 ACGAACAAGAAAACATGTTTGGT 57.933 34.783 23.93 11.37 42.62 3.67
94 95 5.099575 ACGAACAAGAAAACATGTTTGGTC 58.900 37.500 23.93 18.20 42.62 4.02
95 96 5.105917 ACGAACAAGAAAACATGTTTGGTCT 60.106 36.000 23.93 19.71 42.62 3.85
96 97 6.094325 ACGAACAAGAAAACATGTTTGGTCTA 59.906 34.615 23.93 0.00 42.62 2.59
97 98 6.632834 CGAACAAGAAAACATGTTTGGTCTAG 59.367 38.462 23.93 13.96 39.73 2.43
98 99 5.831997 ACAAGAAAACATGTTTGGTCTAGC 58.168 37.500 23.93 8.21 32.36 3.42
99 100 5.359576 ACAAGAAAACATGTTTGGTCTAGCA 59.640 36.000 23.93 0.00 32.36 3.49
100 101 5.695851 AGAAAACATGTTTGGTCTAGCAG 57.304 39.130 23.93 0.00 32.36 4.24
101 102 3.923017 AAACATGTTTGGTCTAGCAGC 57.077 42.857 22.71 0.00 0.00 5.25
102 103 2.566833 ACATGTTTGGTCTAGCAGCA 57.433 45.000 0.00 0.00 0.00 4.41
103 104 2.862541 ACATGTTTGGTCTAGCAGCAA 58.137 42.857 0.00 3.64 40.84 3.91
111 112 6.648879 TTTGGTCTAGCAGCAAAAATTAGT 57.351 33.333 13.53 0.00 47.00 2.24
112 113 5.627499 TGGTCTAGCAGCAAAAATTAGTG 57.373 39.130 0.00 0.00 0.00 2.74
113 114 4.082787 TGGTCTAGCAGCAAAAATTAGTGC 60.083 41.667 5.35 5.35 41.22 4.40
114 115 4.091424 GTCTAGCAGCAAAAATTAGTGCG 58.909 43.478 0.00 4.86 45.62 5.34
115 116 1.701704 AGCAGCAAAAATTAGTGCGC 58.298 45.000 0.00 0.00 45.62 6.09
116 117 0.715551 GCAGCAAAAATTAGTGCGCC 59.284 50.000 4.18 0.00 45.62 6.53
117 118 1.934399 GCAGCAAAAATTAGTGCGCCA 60.934 47.619 4.18 0.00 45.62 5.69
118 119 2.402305 CAGCAAAAATTAGTGCGCCAA 58.598 42.857 4.18 0.00 45.62 4.52
119 120 2.155539 CAGCAAAAATTAGTGCGCCAAC 59.844 45.455 4.18 0.00 45.62 3.77
120 121 2.035832 AGCAAAAATTAGTGCGCCAACT 59.964 40.909 4.18 5.06 45.62 3.16
121 122 2.799978 GCAAAAATTAGTGCGCCAACTT 59.200 40.909 4.18 0.00 0.00 2.66
122 123 3.362888 GCAAAAATTAGTGCGCCAACTTG 60.363 43.478 4.18 0.00 0.00 3.16
123 124 2.723124 AAATTAGTGCGCCAACTTGG 57.277 45.000 4.18 3.10 41.55 3.61
124 125 1.616159 AATTAGTGCGCCAACTTGGT 58.384 45.000 4.18 0.00 40.46 3.67
125 126 2.483014 ATTAGTGCGCCAACTTGGTA 57.517 45.000 4.18 0.00 40.46 3.25
126 127 1.803334 TTAGTGCGCCAACTTGGTAG 58.197 50.000 4.18 5.52 40.46 3.18
127 128 0.672401 TAGTGCGCCAACTTGGTAGC 60.672 55.000 17.98 17.98 40.46 3.58
128 129 2.112087 TGCGCCAACTTGGTAGCA 59.888 55.556 21.50 21.50 45.57 3.49
129 130 1.527148 TGCGCCAACTTGGTAGCAA 60.527 52.632 22.48 7.22 45.10 3.91
130 131 0.893270 TGCGCCAACTTGGTAGCAAT 60.893 50.000 22.48 0.00 45.10 3.56
131 132 1.091537 GCGCCAACTTGGTAGCAATA 58.908 50.000 19.19 0.00 40.90 1.90
132 133 1.202143 GCGCCAACTTGGTAGCAATAC 60.202 52.381 19.19 0.00 40.90 1.89
133 134 1.062002 CGCCAACTTGGTAGCAATACG 59.938 52.381 7.98 4.46 40.46 3.06
134 135 1.202143 GCCAACTTGGTAGCAATACGC 60.202 52.381 7.98 4.34 40.46 4.42
135 136 1.400494 CCAACTTGGTAGCAATACGCC 59.600 52.381 7.98 0.00 35.01 5.68
136 137 2.080693 CAACTTGGTAGCAATACGCCA 58.919 47.619 7.98 0.00 44.04 5.69
137 138 1.734163 ACTTGGTAGCAATACGCCAC 58.266 50.000 7.98 0.00 44.04 5.01
142 143 2.537639 GTAGCAATACGCCACCAAAC 57.462 50.000 0.00 0.00 44.04 2.93
143 144 1.080298 TAGCAATACGCCACCAAACG 58.920 50.000 0.00 0.00 44.04 3.60
144 145 1.799916 GCAATACGCCACCAAACGC 60.800 57.895 0.00 0.00 32.94 4.84
150 151 3.423154 GCCACCAAACGCGGAGAG 61.423 66.667 12.47 0.00 0.00 3.20
152 153 1.290955 CCACCAAACGCGGAGAGTA 59.709 57.895 12.47 0.00 41.76 2.59
153 154 1.012486 CCACCAAACGCGGAGAGTAC 61.012 60.000 12.47 0.00 41.76 2.73
154 155 0.319211 CACCAAACGCGGAGAGTACA 60.319 55.000 12.47 0.00 41.76 2.90
155 156 0.038526 ACCAAACGCGGAGAGTACAG 60.039 55.000 12.47 0.00 41.76 2.74
156 157 1.352156 CCAAACGCGGAGAGTACAGC 61.352 60.000 12.47 0.00 41.76 4.40
157 158 0.388649 CAAACGCGGAGAGTACAGCT 60.389 55.000 12.47 0.00 41.76 4.24
158 159 0.109226 AAACGCGGAGAGTACAGCTC 60.109 55.000 12.47 7.11 41.76 4.09
159 160 1.241990 AACGCGGAGAGTACAGCTCA 61.242 55.000 12.47 0.00 41.76 4.26
160 161 1.032657 ACGCGGAGAGTACAGCTCAT 61.033 55.000 12.47 0.00 46.47 2.90
161 162 0.593518 CGCGGAGAGTACAGCTCATG 60.594 60.000 15.05 9.31 46.47 3.07
162 163 0.741326 GCGGAGAGTACAGCTCATGA 59.259 55.000 15.05 0.00 46.47 3.07
163 164 1.135139 GCGGAGAGTACAGCTCATGAA 59.865 52.381 15.05 0.00 46.47 2.57
164 165 2.417379 GCGGAGAGTACAGCTCATGAAA 60.417 50.000 15.05 0.00 46.47 2.69
165 166 3.182967 CGGAGAGTACAGCTCATGAAAC 58.817 50.000 15.05 0.00 46.47 2.78
166 167 3.182967 GGAGAGTACAGCTCATGAAACG 58.817 50.000 15.05 0.00 46.47 3.60
167 168 3.182967 GAGAGTACAGCTCATGAAACGG 58.817 50.000 9.98 0.00 46.47 4.44
168 169 2.093973 AGAGTACAGCTCATGAAACGGG 60.094 50.000 0.00 0.00 46.47 5.28
169 170 1.066143 AGTACAGCTCATGAAACGGGG 60.066 52.381 0.00 0.00 0.00 5.73
170 171 0.251916 TACAGCTCATGAAACGGGGG 59.748 55.000 0.00 0.00 0.00 5.40
171 172 1.299648 CAGCTCATGAAACGGGGGA 59.700 57.895 0.00 0.00 0.00 4.81
172 173 0.322456 CAGCTCATGAAACGGGGGAA 60.322 55.000 0.00 0.00 0.00 3.97
173 174 0.035056 AGCTCATGAAACGGGGGAAG 60.035 55.000 0.00 0.00 0.00 3.46
174 175 1.032114 GCTCATGAAACGGGGGAAGG 61.032 60.000 0.00 0.00 0.00 3.46
175 176 0.328258 CTCATGAAACGGGGGAAGGT 59.672 55.000 0.00 0.00 0.00 3.50
176 177 0.774908 TCATGAAACGGGGGAAGGTT 59.225 50.000 0.00 0.00 0.00 3.50
177 178 1.986631 TCATGAAACGGGGGAAGGTTA 59.013 47.619 0.00 0.00 0.00 2.85
178 179 2.026636 TCATGAAACGGGGGAAGGTTAG 60.027 50.000 0.00 0.00 0.00 2.34
179 180 0.037160 TGAAACGGGGGAAGGTTAGC 59.963 55.000 0.00 0.00 0.00 3.09
180 181 0.037160 GAAACGGGGGAAGGTTAGCA 59.963 55.000 0.00 0.00 0.00 3.49
181 182 0.702316 AAACGGGGGAAGGTTAGCAT 59.298 50.000 0.00 0.00 0.00 3.79
182 183 0.255033 AACGGGGGAAGGTTAGCATC 59.745 55.000 0.00 0.00 0.00 3.91
183 184 0.620700 ACGGGGGAAGGTTAGCATCT 60.621 55.000 0.00 0.00 0.00 2.90
184 185 0.546598 CGGGGGAAGGTTAGCATCTT 59.453 55.000 0.00 0.00 0.00 2.40
185 186 1.747206 CGGGGGAAGGTTAGCATCTTG 60.747 57.143 0.00 0.00 0.00 3.02
186 187 1.410224 GGGGGAAGGTTAGCATCTTGG 60.410 57.143 0.00 0.00 0.00 3.61
187 188 1.393603 GGGAAGGTTAGCATCTTGGC 58.606 55.000 0.00 0.00 0.00 4.52
189 190 2.621668 GGGAAGGTTAGCATCTTGGCTT 60.622 50.000 0.00 0.00 42.71 4.35
190 191 3.092301 GGAAGGTTAGCATCTTGGCTTT 58.908 45.455 0.00 0.00 42.71 3.51
215 216 2.154854 TAGCTATGCAAGTGGATCGC 57.845 50.000 0.00 1.69 35.37 4.58
220 221 2.401583 ATGCAAGTGGATCGCTTACA 57.598 45.000 0.00 4.67 32.80 2.41
226 228 4.094294 GCAAGTGGATCGCTTACATGTTTA 59.906 41.667 2.30 0.00 32.60 2.01
235 237 6.598753 TCGCTTACATGTTTAATTAGAGCC 57.401 37.500 2.30 0.00 0.00 4.70
247 249 1.795768 TTAGAGCCACTTGACGCAAG 58.204 50.000 15.16 15.16 45.85 4.01
262 264 7.642586 ACTTGACGCAAGACTAATTGTTTTAAC 59.357 33.333 21.19 0.00 43.42 2.01
264 267 7.129622 TGACGCAAGACTAATTGTTTTAACTG 58.870 34.615 0.00 0.00 43.62 3.16
268 271 7.422399 GCAAGACTAATTGTTTTAACTGTGGA 58.578 34.615 0.00 0.00 32.56 4.02
270 273 8.402472 CAAGACTAATTGTTTTAACTGTGGACA 58.598 33.333 0.00 0.00 0.00 4.02
318 340 1.203523 CTAGCGCTATAAGGCTGAGGG 59.796 57.143 19.19 0.00 40.32 4.30
319 341 1.004440 GCGCTATAAGGCTGAGGGG 60.004 63.158 0.00 0.47 0.00 4.79
341 363 3.432186 GGTAGCATCATTCAGCCTACACA 60.432 47.826 0.00 0.00 0.00 3.72
348 371 2.185004 TTCAGCCTACACAGCTTTCC 57.815 50.000 0.00 0.00 38.95 3.13
366 398 5.337491 GCTTTCCCATCCATACACACAAAAT 60.337 40.000 0.00 0.00 0.00 1.82
372 404 8.110271 TCCCATCCATACACACAAAATTAACTA 58.890 33.333 0.00 0.00 0.00 2.24
393 429 3.656066 CGAGCATCTGAGCTAGCAA 57.344 52.632 18.83 3.49 46.75 3.91
509 545 2.051345 CGTTTCAAGGGTGTGCGC 60.051 61.111 0.00 0.00 0.00 6.09
510 546 2.335011 GTTTCAAGGGTGTGCGCC 59.665 61.111 4.18 0.00 0.00 6.53
524 564 1.089481 TGCGCCGTGAGATCAAATCC 61.089 55.000 4.18 0.00 0.00 3.01
561 601 1.270550 CTGCCATGGAAGCGTTTCTTT 59.729 47.619 18.40 0.00 34.56 2.52
664 707 2.433604 ACTCCATCGATGACTTCATGCT 59.566 45.455 26.86 0.00 36.57 3.79
738 791 1.651737 TCGTTGGGGAAGATGAAGGA 58.348 50.000 0.00 0.00 0.00 3.36
771 825 3.735237 GGCAACGAGATTGGAGATCTA 57.265 47.619 0.00 0.00 38.88 1.98
914 992 2.416547 AGCTTGTCGGAATTGATGAACG 59.583 45.455 0.00 0.00 0.00 3.95
915 993 2.415168 GCTTGTCGGAATTGATGAACGA 59.585 45.455 0.00 0.00 0.00 3.85
928 1006 0.245539 TGAACGAAAGGCCGAGGTAG 59.754 55.000 0.00 0.00 0.00 3.18
1072 1150 6.661805 AGAATTTAAATGTCGGGCCTTCTTAA 59.338 34.615 0.84 0.00 0.00 1.85
1158 1236 1.080705 GTACGCCGACACTGAAGCT 60.081 57.895 0.00 0.00 0.00 3.74
1165 1243 0.034059 CGACACTGAAGCTGGGAGTT 59.966 55.000 0.00 0.00 0.00 3.01
1234 1312 9.588096 AAAGGTACAATTTCTTCTCCAACTTAT 57.412 29.630 0.00 0.00 0.00 1.73
1379 1532 7.780064 TCAAAAACATATGGAGAGAGAGAGAG 58.220 38.462 7.80 0.00 0.00 3.20
1382 1535 6.514012 AACATATGGAGAGAGAGAGAGAGA 57.486 41.667 7.80 0.00 0.00 3.10
1384 1537 5.846164 ACATATGGAGAGAGAGAGAGAGAGA 59.154 44.000 7.80 0.00 0.00 3.10
1385 1538 4.970860 ATGGAGAGAGAGAGAGAGAGAG 57.029 50.000 0.00 0.00 0.00 3.20
1386 1539 3.994317 TGGAGAGAGAGAGAGAGAGAGA 58.006 50.000 0.00 0.00 0.00 3.10
1387 1540 3.963374 TGGAGAGAGAGAGAGAGAGAGAG 59.037 52.174 0.00 0.00 0.00 3.20
1388 1541 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
1389 1542 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
1390 1543 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1391 1544 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1392 1545 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1393 1546 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1394 1547 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1395 1548 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1396 1549 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1397 1550 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1398 1551 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1399 1552 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1400 1553 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1401 1554 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1402 1555 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1403 1556 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1404 1557 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1405 1558 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1406 1559 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1407 1560 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1408 1561 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1416 1569 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1445 1600 8.321353 ACCCGAAAGCATATATCTTATGAATGA 58.679 33.333 0.00 0.00 0.00 2.57
1610 3783 9.046296 CCAGTTAAGTGTGTATATTCATCCTTC 57.954 37.037 9.42 0.00 0.00 3.46
1616 3789 7.275920 AGTGTGTATATTCATCCTTCTGTTCC 58.724 38.462 0.00 0.00 0.00 3.62
1693 3866 5.071788 TCGCCCAACTCTCCATATAATCTTT 59.928 40.000 0.00 0.00 0.00 2.52
1719 3892 5.455056 ACTAATTAGCATGTACTCCCTCG 57.545 43.478 12.54 0.00 0.00 4.63
1724 3897 0.535335 GCATGTACTCCCTCGGTTCA 59.465 55.000 0.00 0.00 0.00 3.18
1776 3985 8.951787 ATACACACAAGAACTAAGTGTACAAA 57.048 30.769 0.00 0.00 45.16 2.83
1777 3986 7.859325 ACACACAAGAACTAAGTGTACAAAT 57.141 32.000 0.00 0.00 44.02 2.32
1778 3987 7.693952 ACACACAAGAACTAAGTGTACAAATG 58.306 34.615 0.00 0.00 44.02 2.32
1779 3988 7.335924 ACACACAAGAACTAAGTGTACAAATGT 59.664 33.333 0.00 0.00 44.02 2.71
1780 3989 8.822855 CACACAAGAACTAAGTGTACAAATGTA 58.177 33.333 0.00 0.00 44.02 2.29
1781 3990 9.555727 ACACAAGAACTAAGTGTACAAATGTAT 57.444 29.630 0.00 0.00 44.02 2.29
1782 3991 9.811655 CACAAGAACTAAGTGTACAAATGTATG 57.188 33.333 0.00 0.00 32.54 2.39
1826 4035 8.157476 TCAGCTTTCTTAAAGGAGTAGACATTT 58.843 33.333 1.90 0.00 38.93 2.32
1827 4036 9.436957 CAGCTTTCTTAAAGGAGTAGACATTTA 57.563 33.333 1.90 0.00 38.93 1.40
1833 4042 9.268282 TCTTAAAGGAGTAGACATTTATGGAGT 57.732 33.333 0.00 0.00 0.00 3.85
1834 4043 9.319143 CTTAAAGGAGTAGACATTTATGGAGTG 57.681 37.037 0.00 0.00 0.00 3.51
1835 4044 5.283457 AGGAGTAGACATTTATGGAGTGC 57.717 43.478 0.00 0.00 0.00 4.40
1836 4045 4.716784 AGGAGTAGACATTTATGGAGTGCA 59.283 41.667 0.00 0.00 0.00 4.57
1837 4046 5.053145 GGAGTAGACATTTATGGAGTGCAG 58.947 45.833 0.00 0.00 0.00 4.41
1838 4047 4.446371 AGTAGACATTTATGGAGTGCAGC 58.554 43.478 0.00 0.00 0.00 5.25
1839 4048 2.283298 AGACATTTATGGAGTGCAGCG 58.717 47.619 0.00 0.00 0.00 5.18
1840 4049 2.009774 GACATTTATGGAGTGCAGCGT 58.990 47.619 0.00 0.00 0.00 5.07
1841 4050 2.420022 GACATTTATGGAGTGCAGCGTT 59.580 45.455 0.00 0.00 0.00 4.84
1842 4051 2.819608 ACATTTATGGAGTGCAGCGTTT 59.180 40.909 0.00 0.00 0.00 3.60
1843 4052 3.255642 ACATTTATGGAGTGCAGCGTTTT 59.744 39.130 0.00 0.00 0.00 2.43
1844 4053 4.457603 ACATTTATGGAGTGCAGCGTTTTA 59.542 37.500 0.00 0.00 0.00 1.52
1845 4054 4.678509 TTTATGGAGTGCAGCGTTTTAG 57.321 40.909 0.00 0.00 0.00 1.85
1846 4055 2.185004 ATGGAGTGCAGCGTTTTAGT 57.815 45.000 0.00 0.00 0.00 2.24
1847 4056 1.225855 TGGAGTGCAGCGTTTTAGTG 58.774 50.000 0.00 0.00 0.00 2.74
1848 4057 0.110192 GGAGTGCAGCGTTTTAGTGC 60.110 55.000 0.00 0.00 37.73 4.40
1849 4058 0.110192 GAGTGCAGCGTTTTAGTGCC 60.110 55.000 0.00 0.00 36.31 5.01
1850 4059 0.535102 AGTGCAGCGTTTTAGTGCCT 60.535 50.000 0.00 0.00 36.31 4.75
1851 4060 0.385974 GTGCAGCGTTTTAGTGCCTG 60.386 55.000 0.00 0.00 36.31 4.85
1852 4061 1.210155 GCAGCGTTTTAGTGCCTGG 59.790 57.895 0.00 0.00 0.00 4.45
1853 4062 1.875963 CAGCGTTTTAGTGCCTGGG 59.124 57.895 0.00 0.00 0.00 4.45
1854 4063 1.971695 AGCGTTTTAGTGCCTGGGC 60.972 57.895 4.43 4.43 42.35 5.36
1855 4064 1.971695 GCGTTTTAGTGCCTGGGCT 60.972 57.895 13.05 0.00 42.51 5.19
1856 4065 1.923227 GCGTTTTAGTGCCTGGGCTC 61.923 60.000 13.05 9.25 42.51 4.70
1857 4066 0.605319 CGTTTTAGTGCCTGGGCTCA 60.605 55.000 13.05 0.00 42.51 4.26
1858 4067 1.168714 GTTTTAGTGCCTGGGCTCAG 58.831 55.000 6.61 6.61 42.51 3.35
1859 4068 1.064003 TTTTAGTGCCTGGGCTCAGA 58.936 50.000 17.43 0.00 43.49 3.27
1860 4069 1.064003 TTTAGTGCCTGGGCTCAGAA 58.936 50.000 17.43 0.00 43.49 3.02
1861 4070 0.615331 TTAGTGCCTGGGCTCAGAAG 59.385 55.000 17.43 0.00 43.49 2.85
1862 4071 0.545309 TAGTGCCTGGGCTCAGAAGT 60.545 55.000 17.43 8.50 43.49 3.01
1863 4072 1.673665 GTGCCTGGGCTCAGAAGTG 60.674 63.158 17.43 0.00 43.49 3.16
1864 4073 2.045536 GCCTGGGCTCAGAAGTGG 60.046 66.667 17.43 0.00 43.49 4.00
1865 4074 2.596851 GCCTGGGCTCAGAAGTGGA 61.597 63.158 17.43 0.00 43.49 4.02
1866 4075 1.919600 GCCTGGGCTCAGAAGTGGAT 61.920 60.000 17.43 0.00 43.49 3.41
1867 4076 0.622665 CCTGGGCTCAGAAGTGGATT 59.377 55.000 17.43 0.00 43.49 3.01
1868 4077 1.839994 CCTGGGCTCAGAAGTGGATTA 59.160 52.381 17.43 0.00 43.49 1.75
1869 4078 2.420687 CCTGGGCTCAGAAGTGGATTAC 60.421 54.545 17.43 0.00 43.49 1.89
1870 4079 1.559682 TGGGCTCAGAAGTGGATTACC 59.440 52.381 0.00 0.00 0.00 2.85
1871 4080 1.473434 GGGCTCAGAAGTGGATTACCG 60.473 57.143 0.00 0.00 39.42 4.02
1872 4081 1.480954 GGCTCAGAAGTGGATTACCGA 59.519 52.381 0.00 0.00 39.42 4.69
1873 4082 2.541556 GCTCAGAAGTGGATTACCGAC 58.458 52.381 0.00 0.00 39.42 4.79
1874 4083 2.094182 GCTCAGAAGTGGATTACCGACA 60.094 50.000 0.00 0.00 39.42 4.35
2202 4418 7.517614 TTTTACACAAGACTATTCAATGCCA 57.482 32.000 0.00 0.00 0.00 4.92
2271 4487 0.393820 AAAATGTGCTGGGTTGCCTG 59.606 50.000 0.00 0.00 0.00 4.85
2641 4857 3.684788 ACAGACATGCTTGGAATCGTAAC 59.315 43.478 4.44 0.00 0.00 2.50
2837 5053 3.182967 GTTGTCTCATGTCCGATCACTC 58.817 50.000 0.00 0.00 0.00 3.51
2898 5114 3.177997 AGTTCAGGCATTTGCGTTTTT 57.822 38.095 0.00 0.00 43.26 1.94
2924 5140 5.812127 GGACTTTGAAGATTGCAAACAACTT 59.188 36.000 1.71 7.21 38.99 2.66
2943 5159 6.016777 ACAACTTGAGAACCATCATCTTGAAC 60.017 38.462 0.00 0.00 0.00 3.18
2986 5202 1.556911 CAGGTACCTGAGCCTTCATGT 59.443 52.381 34.54 0.00 46.30 3.21
2988 5204 1.279271 GGTACCTGAGCCTTCATGTGT 59.721 52.381 4.06 0.00 34.56 3.72
3015 5231 2.777832 AGTAAGCAAGCTCCCAGAAG 57.222 50.000 0.00 0.00 0.00 2.85
3025 5241 1.744114 GCTCCCAGAAGAAATCGGACC 60.744 57.143 0.00 0.00 0.00 4.46
3231 5447 4.861102 AACTTCCTGCAAGAATTTGAGG 57.139 40.909 0.00 0.00 36.36 3.86
3336 5570 6.345920 AGAAAACTATTATTGTCGCTTCCG 57.654 37.500 0.00 0.00 0.00 4.30
3344 5578 5.866335 TTATTGTCGCTTCCGTTACAAAT 57.134 34.783 0.00 0.00 35.65 2.32
3375 5609 5.148502 ACCTTCTCTCTCTAACTGTTTGGA 58.851 41.667 0.00 0.00 0.00 3.53
3492 5726 0.951040 GGTGGGCTCTCTTGTCAACG 60.951 60.000 0.00 0.00 0.00 4.10
3493 5727 1.301716 TGGGCTCTCTTGTCAACGC 60.302 57.895 0.00 0.00 0.00 4.84
3508 5742 1.310216 AACGCCCAGAAATTACGCCC 61.310 55.000 0.00 0.00 0.00 6.13
3592 5826 6.432607 TTGTCTGATTCTGAGAATTGATGC 57.567 37.500 9.35 0.00 0.00 3.91
3612 5846 6.894654 TGATGCAAGGGAAATTAGAAATACCA 59.105 34.615 0.00 0.00 0.00 3.25
3634 5868 4.006319 ACATTAACAGAAGAGCCTGAAGC 58.994 43.478 0.00 0.00 44.25 3.86
3673 5907 3.332187 TGTGGTGAAGTTGGATTCCCATA 59.668 43.478 0.00 0.00 43.12 2.74
3727 5961 5.343058 GTGATGTGATGAATTTGACGTTTGG 59.657 40.000 0.00 0.00 0.00 3.28
3730 5964 2.560542 TGATGAATTTGACGTTTGGGGG 59.439 45.455 0.00 0.00 0.00 5.40
3772 6006 8.424918 GGTAGATGACCTCTTGATAGAATTTGA 58.575 37.037 0.00 0.00 45.89 2.69
3773 6007 9.995003 GTAGATGACCTCTTGATAGAATTTGAT 57.005 33.333 0.00 0.00 35.28 2.57
3774 6008 8.905660 AGATGACCTCTTGATAGAATTTGATG 57.094 34.615 0.00 0.00 0.00 3.07
3775 6009 8.492782 AGATGACCTCTTGATAGAATTTGATGT 58.507 33.333 0.00 0.00 0.00 3.06
3776 6010 7.854557 TGACCTCTTGATAGAATTTGATGTG 57.145 36.000 0.00 0.00 0.00 3.21
3777 6011 7.623630 TGACCTCTTGATAGAATTTGATGTGA 58.376 34.615 0.00 0.00 0.00 3.58
3778 6012 8.270030 TGACCTCTTGATAGAATTTGATGTGAT 58.730 33.333 0.00 0.00 0.00 3.06
3779 6013 9.770097 GACCTCTTGATAGAATTTGATGTGATA 57.230 33.333 0.00 0.00 0.00 2.15
3780 6014 9.775854 ACCTCTTGATAGAATTTGATGTGATAG 57.224 33.333 0.00 0.00 0.00 2.08
3781 6015 9.993454 CCTCTTGATAGAATTTGATGTGATAGA 57.007 33.333 0.00 0.00 0.00 1.98
3807 6041 8.621532 ATTTGATGTAGCAAAAACTGAGTCTA 57.378 30.769 0.00 0.00 40.72 2.59
3830 6064 3.056678 TCGGTACTAGCGGTGATTTTGAA 60.057 43.478 7.76 0.00 39.89 2.69
3873 6107 4.034510 CCAGCCTCGTTAAAATCAGATGTC 59.965 45.833 0.00 0.00 0.00 3.06
3887 6121 7.579940 AATCAGATGTCAAGTATGGGGATAT 57.420 36.000 0.00 0.00 0.00 1.63
3891 6125 4.085357 TGTCAAGTATGGGGATATGTGC 57.915 45.455 0.00 0.00 0.00 4.57
3933 6167 2.342650 GCAAAGGCTGCCATTCGGA 61.343 57.895 22.65 0.00 46.13 4.55
3975 6209 3.589951 ACCGCCCTACTCTATACTTGA 57.410 47.619 0.00 0.00 0.00 3.02
4023 6257 6.405176 CGAGGTACTAACTTTTTCTCCCGTAT 60.405 42.308 0.00 0.00 41.55 3.06
4041 6282 6.698329 TCCCGTATGACATGTACTTTAATTCG 59.302 38.462 0.00 0.00 0.00 3.34
4042 6283 6.698329 CCCGTATGACATGTACTTTAATTCGA 59.302 38.462 0.00 0.00 0.00 3.71
4045 6286 8.964150 CGTATGACATGTACTTTAATTCGATCA 58.036 33.333 0.00 0.00 0.00 2.92
4048 6289 8.940768 TGACATGTACTTTAATTCGATCATGA 57.059 30.769 0.00 0.00 36.38 3.07
4049 6290 9.034544 TGACATGTACTTTAATTCGATCATGAG 57.965 33.333 0.00 0.00 36.38 2.90
4093 6636 3.896888 TGCAACTCCAAAGGTTCATCAAT 59.103 39.130 0.00 0.00 0.00 2.57
4099 6642 3.689161 TCCAAAGGTTCATCAATACTGCG 59.311 43.478 0.00 0.00 0.00 5.18
4103 6646 5.705609 AAGGTTCATCAATACTGCGTTTT 57.294 34.783 0.00 0.00 0.00 2.43
4138 6681 5.735285 ATTCATCATTCTCTGCGAGGATA 57.265 39.130 5.87 0.00 0.00 2.59
4152 6695 2.456577 GAGGATAGATCTGCCTCCCTC 58.543 57.143 25.14 18.52 41.84 4.30
4153 6696 1.792026 AGGATAGATCTGCCTCCCTCA 59.208 52.381 5.18 0.00 0.00 3.86
4172 6723 5.126707 CCCTCAGGTACGTACTTAGTCAAAT 59.873 44.000 24.07 0.00 0.00 2.32
4215 6787 5.808366 TTTATACTCACAGCATCCCTAGG 57.192 43.478 0.06 0.06 0.00 3.02
4227 6799 2.456073 TCCCTAGGTAGAGAACTGCC 57.544 55.000 8.29 0.00 46.81 4.85
4318 6923 4.668138 TTGGGTTATATATGGGCCTTCC 57.332 45.455 4.53 0.00 0.00 3.46
4347 6995 7.096551 TCGTGATAATGTGAGAAAGATGACAA 58.903 34.615 0.00 0.00 0.00 3.18
4415 7064 5.004726 GTGAATTAATTGCATGCGTTTCCTC 59.995 40.000 14.09 4.94 0.00 3.71
4416 7065 3.502191 TTAATTGCATGCGTTTCCTCC 57.498 42.857 14.09 0.00 0.00 4.30
4417 7066 1.549203 AATTGCATGCGTTTCCTCCT 58.451 45.000 14.09 0.00 0.00 3.69
4418 7067 1.098050 ATTGCATGCGTTTCCTCCTC 58.902 50.000 14.09 0.00 0.00 3.71
4419 7068 0.036732 TTGCATGCGTTTCCTCCTCT 59.963 50.000 14.09 0.00 0.00 3.69
4420 7069 0.901827 TGCATGCGTTTCCTCCTCTA 59.098 50.000 14.09 0.00 0.00 2.43
4421 7070 1.486310 TGCATGCGTTTCCTCCTCTAT 59.514 47.619 14.09 0.00 0.00 1.98
4422 7071 1.869767 GCATGCGTTTCCTCCTCTATG 59.130 52.381 0.00 0.00 0.00 2.23
4423 7072 1.869767 CATGCGTTTCCTCCTCTATGC 59.130 52.381 0.00 0.00 0.00 3.14
4424 7073 0.901827 TGCGTTTCCTCCTCTATGCA 59.098 50.000 0.00 0.00 0.00 3.96
4425 7074 1.486310 TGCGTTTCCTCCTCTATGCAT 59.514 47.619 3.79 3.79 0.00 3.96
4426 7075 1.869767 GCGTTTCCTCCTCTATGCATG 59.130 52.381 10.16 0.00 0.00 4.06
4427 7076 2.743183 GCGTTTCCTCCTCTATGCATGT 60.743 50.000 10.16 0.00 0.00 3.21
4428 7077 2.868583 CGTTTCCTCCTCTATGCATGTG 59.131 50.000 10.16 2.07 0.00 3.21
4429 7078 3.679917 CGTTTCCTCCTCTATGCATGTGT 60.680 47.826 10.16 0.00 0.00 3.72
4431 7080 2.470990 TCCTCCTCTATGCATGTGTGT 58.529 47.619 10.16 0.00 0.00 3.72
4433 7082 3.264193 TCCTCCTCTATGCATGTGTGTTT 59.736 43.478 10.16 0.00 0.00 2.83
4435 7084 3.346315 TCCTCTATGCATGTGTGTTTGG 58.654 45.455 10.16 0.64 0.00 3.28
4439 7088 0.319083 ATGCATGTGTGTTTGGCCAG 59.681 50.000 5.11 0.00 0.00 4.85
4440 7089 1.042003 TGCATGTGTGTTTGGCCAGT 61.042 50.000 5.11 0.00 0.00 4.00
4443 7092 2.503331 CATGTGTGTTTGGCCAGTCTA 58.497 47.619 5.11 0.00 0.00 2.59
4508 7184 3.380320 GTGTGTTTGGCCAGTCTAAACTT 59.620 43.478 16.23 0.00 43.81 2.66
4536 7212 4.728772 TGGAAACATGTCATTCTTCAGGT 58.271 39.130 0.00 0.00 33.40 4.00
4537 7213 5.139727 TGGAAACATGTCATTCTTCAGGTT 58.860 37.500 0.00 0.00 39.61 3.50
4539 7215 5.241506 GGAAACATGTCATTCTTCAGGTTCA 59.758 40.000 0.00 0.00 37.54 3.18
4540 7216 5.954296 AACATGTCATTCTTCAGGTTCAG 57.046 39.130 0.00 0.00 34.29 3.02
4579 7258 2.264794 GTCGTGCCGTGGGAGAAT 59.735 61.111 0.00 0.00 0.00 2.40
4596 7275 1.956477 GAATGACACCAAGCACAAGGT 59.044 47.619 0.00 0.00 39.10 3.50
4622 8924 2.820059 TGACGTCAAGCTCAGAACAT 57.180 45.000 17.62 0.00 0.00 2.71
4706 9085 6.071391 ACAGAATCATGGTAAAACATGGAACC 60.071 38.462 8.09 0.00 46.33 3.62
4729 9108 2.097304 GTGCACACAGACATGACAACAA 59.903 45.455 13.17 0.00 0.00 2.83
4783 9165 7.897575 ACTTTGTGTACTGATCTTCTTCATC 57.102 36.000 0.00 0.00 0.00 2.92
4790 9172 7.224362 GTGTACTGATCTTCTTCATCCAGATTG 59.776 40.741 0.00 0.00 0.00 2.67
4799 9181 4.880120 TCTTCATCCAGATTGCATGAGAAC 59.120 41.667 0.00 0.00 0.00 3.01
4801 9183 2.028420 TCCAGATTGCATGAGAACCG 57.972 50.000 0.00 0.00 0.00 4.44
4803 9185 1.407299 CCAGATTGCATGAGAACCGGA 60.407 52.381 9.46 0.00 0.00 5.14
4804 9186 1.667724 CAGATTGCATGAGAACCGGAC 59.332 52.381 9.46 0.99 0.00 4.79
4805 9187 1.556911 AGATTGCATGAGAACCGGACT 59.443 47.619 9.46 7.11 0.00 3.85
4806 9188 1.667724 GATTGCATGAGAACCGGACTG 59.332 52.381 9.46 0.00 0.00 3.51
4810 9192 1.734465 GCATGAGAACCGGACTGAAAG 59.266 52.381 9.46 0.23 42.29 2.62
4811 9193 2.612972 GCATGAGAACCGGACTGAAAGA 60.613 50.000 9.46 0.00 37.43 2.52
4812 9194 2.814280 TGAGAACCGGACTGAAAGAC 57.186 50.000 9.46 0.00 37.43 3.01
4851 9234 2.573689 GAACCGAGACGCGACGAG 60.574 66.667 15.93 6.21 44.57 4.18
4852 9235 4.755614 AACCGAGACGCGACGAGC 62.756 66.667 15.93 0.59 44.57 5.03
4855 9238 4.753877 CGAGACGCGACGAGCCAA 62.754 66.667 15.93 0.00 44.57 4.52
4856 9239 3.173240 GAGACGCGACGAGCCAAC 61.173 66.667 15.93 0.00 44.76 3.77
4861 9244 3.033764 GCGACGAGCCAACGACAA 61.034 61.111 0.00 0.00 40.81 3.18
4862 9245 2.591311 GCGACGAGCCAACGACAAA 61.591 57.895 0.00 0.00 40.81 2.83
4863 9246 1.200839 CGACGAGCCAACGACAAAC 59.799 57.895 0.00 0.00 37.03 2.93
4864 9247 1.484227 CGACGAGCCAACGACAAACA 61.484 55.000 0.00 0.00 37.03 2.83
4870 9253 2.354821 GAGCCAACGACAAACAAGAAGT 59.645 45.455 0.00 0.00 0.00 3.01
4878 9261 3.430218 CGACAAACAAGAAGTAGGCAGAG 59.570 47.826 0.00 0.00 0.00 3.35
4888 9271 1.497286 AGTAGGCAGAGTAGGAGAGGG 59.503 57.143 0.00 0.00 0.00 4.30
4891 9274 1.398958 GGCAGAGTAGGAGAGGGCTG 61.399 65.000 0.00 0.00 0.00 4.85
4892 9275 0.686112 GCAGAGTAGGAGAGGGCTGT 60.686 60.000 0.00 0.00 0.00 4.40
4900 9283 0.689080 GGAGAGGGCTGTCATGGAGA 60.689 60.000 0.00 0.00 0.00 3.71
4916 9299 2.232298 GAGACAAGGACGCAGGAGGG 62.232 65.000 0.00 0.00 0.00 4.30
4917 9300 3.316573 GACAAGGACGCAGGAGGGG 62.317 68.421 0.00 0.00 0.00 4.79
4928 9311 0.763652 CAGGAGGGGATGATCAGGTG 59.236 60.000 0.09 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.812019 AGTGCTCCCTACGCGTCG 61.812 66.667 18.63 10.17 0.00 5.12
2 3 2.202623 CAGTGCTCCCTACGCGTC 60.203 66.667 18.63 0.00 0.00 5.19
3 4 4.436998 GCAGTGCTCCCTACGCGT 62.437 66.667 19.17 19.17 0.00 6.01
5 6 4.436998 ACGCAGTGCTCCCTACGC 62.437 66.667 14.33 0.00 42.51 4.42
17 18 1.337817 CTCTGACCGAAACGACGCAG 61.338 60.000 0.00 0.00 0.00 5.18
18 19 1.371267 CTCTGACCGAAACGACGCA 60.371 57.895 0.00 0.00 0.00 5.24
19 20 0.456312 ATCTCTGACCGAAACGACGC 60.456 55.000 0.00 0.00 0.00 5.19
20 21 2.819422 TATCTCTGACCGAAACGACG 57.181 50.000 0.00 0.00 0.00 5.12
21 22 3.852536 CACTTATCTCTGACCGAAACGAC 59.147 47.826 0.00 0.00 0.00 4.34
22 23 3.672511 GCACTTATCTCTGACCGAAACGA 60.673 47.826 0.00 0.00 0.00 3.85
23 24 2.599082 GCACTTATCTCTGACCGAAACG 59.401 50.000 0.00 0.00 0.00 3.60
24 25 2.599082 CGCACTTATCTCTGACCGAAAC 59.401 50.000 0.00 0.00 0.00 2.78
25 26 2.876091 CGCACTTATCTCTGACCGAAA 58.124 47.619 0.00 0.00 0.00 3.46
26 27 1.469251 GCGCACTTATCTCTGACCGAA 60.469 52.381 0.30 0.00 0.00 4.30
27 28 0.100682 GCGCACTTATCTCTGACCGA 59.899 55.000 0.30 0.00 0.00 4.69
28 29 0.872021 GGCGCACTTATCTCTGACCG 60.872 60.000 10.83 0.00 0.00 4.79
29 30 0.175760 TGGCGCACTTATCTCTGACC 59.824 55.000 10.83 0.00 0.00 4.02
30 31 1.661112 GTTGGCGCACTTATCTCTGAC 59.339 52.381 10.83 0.00 0.00 3.51
31 32 1.275010 TGTTGGCGCACTTATCTCTGA 59.725 47.619 10.83 0.00 0.00 3.27
32 33 1.725641 TGTTGGCGCACTTATCTCTG 58.274 50.000 10.83 0.00 0.00 3.35
33 34 2.472695 TTGTTGGCGCACTTATCTCT 57.527 45.000 10.83 0.00 0.00 3.10
34 35 4.875544 TTATTGTTGGCGCACTTATCTC 57.124 40.909 10.83 0.00 0.00 2.75
35 36 5.414454 TCTTTTATTGTTGGCGCACTTATCT 59.586 36.000 10.83 0.00 0.00 1.98
36 37 5.636837 TCTTTTATTGTTGGCGCACTTATC 58.363 37.500 10.83 0.00 0.00 1.75
37 38 5.637006 TCTTTTATTGTTGGCGCACTTAT 57.363 34.783 10.83 0.75 0.00 1.73
38 39 5.440234 TTCTTTTATTGTTGGCGCACTTA 57.560 34.783 10.83 0.00 0.00 2.24
39 40 4.298332 CTTCTTTTATTGTTGGCGCACTT 58.702 39.130 10.83 0.00 0.00 3.16
40 41 3.857010 GCTTCTTTTATTGTTGGCGCACT 60.857 43.478 10.83 0.00 0.00 4.40
41 42 2.408368 GCTTCTTTTATTGTTGGCGCAC 59.592 45.455 10.83 0.00 0.00 5.34
42 43 2.035193 TGCTTCTTTTATTGTTGGCGCA 59.965 40.909 10.83 0.00 0.00 6.09
43 44 2.671596 TGCTTCTTTTATTGTTGGCGC 58.328 42.857 0.00 0.00 0.00 6.53
44 45 4.236935 ACATGCTTCTTTTATTGTTGGCG 58.763 39.130 0.00 0.00 0.00 5.69
45 46 5.286082 CGTACATGCTTCTTTTATTGTTGGC 59.714 40.000 0.00 0.00 0.00 4.52
46 47 6.378582 ACGTACATGCTTCTTTTATTGTTGG 58.621 36.000 0.00 0.00 0.00 3.77
47 48 7.213706 CGTACGTACATGCTTCTTTTATTGTTG 59.786 37.037 24.50 0.00 0.00 3.33
48 49 7.116662 TCGTACGTACATGCTTCTTTTATTGTT 59.883 33.333 24.50 0.00 0.00 2.83
49 50 6.587226 TCGTACGTACATGCTTCTTTTATTGT 59.413 34.615 24.50 0.00 0.00 2.71
50 51 6.985013 TCGTACGTACATGCTTCTTTTATTG 58.015 36.000 24.50 3.48 0.00 1.90
51 52 7.116662 TGTTCGTACGTACATGCTTCTTTTATT 59.883 33.333 21.72 0.00 0.00 1.40
52 53 6.587226 TGTTCGTACGTACATGCTTCTTTTAT 59.413 34.615 21.72 0.00 0.00 1.40
53 54 5.919707 TGTTCGTACGTACATGCTTCTTTTA 59.080 36.000 21.72 0.00 0.00 1.52
54 55 4.746115 TGTTCGTACGTACATGCTTCTTTT 59.254 37.500 21.72 0.00 0.00 2.27
55 56 4.300803 TGTTCGTACGTACATGCTTCTTT 58.699 39.130 21.72 0.00 0.00 2.52
56 57 3.904571 TGTTCGTACGTACATGCTTCTT 58.095 40.909 21.72 0.00 0.00 2.52
57 58 3.564235 TGTTCGTACGTACATGCTTCT 57.436 42.857 21.72 0.00 0.00 2.85
58 59 3.916172 TCTTGTTCGTACGTACATGCTTC 59.084 43.478 25.18 9.29 0.00 3.86
59 60 3.904571 TCTTGTTCGTACGTACATGCTT 58.095 40.909 25.18 0.00 0.00 3.91
60 61 3.564235 TCTTGTTCGTACGTACATGCT 57.436 42.857 25.18 0.00 0.00 3.79
61 62 4.634349 TTTCTTGTTCGTACGTACATGC 57.366 40.909 25.18 13.55 0.00 4.06
62 63 5.965202 TGTTTTCTTGTTCGTACGTACATG 58.035 37.500 25.18 25.16 0.00 3.21
63 64 6.201425 ACATGTTTTCTTGTTCGTACGTACAT 59.799 34.615 25.18 7.92 35.14 2.29
64 65 5.519566 ACATGTTTTCTTGTTCGTACGTACA 59.480 36.000 21.72 21.72 35.14 2.90
65 66 5.966335 ACATGTTTTCTTGTTCGTACGTAC 58.034 37.500 17.00 17.00 35.14 3.67
66 67 6.586868 AACATGTTTTCTTGTTCGTACGTA 57.413 33.333 16.05 1.99 42.02 3.57
67 68 5.473796 AACATGTTTTCTTGTTCGTACGT 57.526 34.783 16.05 0.00 42.02 3.57
68 69 5.170625 CCAAACATGTTTTCTTGTTCGTACG 59.829 40.000 21.10 9.53 43.93 3.67
69 70 6.031471 ACCAAACATGTTTTCTTGTTCGTAC 58.969 36.000 21.10 0.00 43.93 3.67
70 71 6.094325 AGACCAAACATGTTTTCTTGTTCGTA 59.906 34.615 21.10 0.00 43.93 3.43
71 72 5.066968 ACCAAACATGTTTTCTTGTTCGT 57.933 34.783 21.10 2.36 43.93 3.85
72 73 5.339990 AGACCAAACATGTTTTCTTGTTCG 58.660 37.500 21.10 7.48 43.93 3.95
73 74 6.417930 GCTAGACCAAACATGTTTTCTTGTTC 59.582 38.462 23.73 12.37 43.93 3.18
74 75 6.127479 TGCTAGACCAAACATGTTTTCTTGTT 60.127 34.615 23.73 4.59 45.70 2.83
75 76 5.359576 TGCTAGACCAAACATGTTTTCTTGT 59.640 36.000 23.73 17.16 39.38 3.16
76 77 5.830912 TGCTAGACCAAACATGTTTTCTTG 58.169 37.500 23.73 22.11 0.00 3.02
77 78 5.507985 GCTGCTAGACCAAACATGTTTTCTT 60.508 40.000 23.73 11.83 0.00 2.52
78 79 4.022849 GCTGCTAGACCAAACATGTTTTCT 60.023 41.667 21.10 22.04 0.00 2.52
79 80 4.229876 GCTGCTAGACCAAACATGTTTTC 58.770 43.478 21.10 16.54 0.00 2.29
80 81 3.636300 TGCTGCTAGACCAAACATGTTTT 59.364 39.130 21.10 8.18 0.00 2.43
81 82 3.221771 TGCTGCTAGACCAAACATGTTT 58.778 40.909 18.13 18.13 0.00 2.83
82 83 2.862541 TGCTGCTAGACCAAACATGTT 58.137 42.857 4.92 4.92 0.00 2.71
83 84 2.566833 TGCTGCTAGACCAAACATGT 57.433 45.000 0.00 0.00 0.00 3.21
84 85 3.921119 TTTGCTGCTAGACCAAACATG 57.079 42.857 0.00 0.00 0.00 3.21
85 86 4.935352 TTTTTGCTGCTAGACCAAACAT 57.065 36.364 0.00 0.00 0.00 2.71
86 87 4.935352 ATTTTTGCTGCTAGACCAAACA 57.065 36.364 0.00 0.00 0.00 2.83
87 88 6.363357 CACTAATTTTTGCTGCTAGACCAAAC 59.637 38.462 0.00 0.00 0.00 2.93
88 89 6.446318 CACTAATTTTTGCTGCTAGACCAAA 58.554 36.000 0.00 0.00 0.00 3.28
89 90 5.564651 GCACTAATTTTTGCTGCTAGACCAA 60.565 40.000 0.00 0.00 35.74 3.67
90 91 4.082787 GCACTAATTTTTGCTGCTAGACCA 60.083 41.667 0.00 0.00 35.74 4.02
91 92 4.415735 GCACTAATTTTTGCTGCTAGACC 58.584 43.478 0.00 0.00 35.74 3.85
92 93 4.091424 CGCACTAATTTTTGCTGCTAGAC 58.909 43.478 0.00 0.00 36.54 2.59
93 94 3.426159 GCGCACTAATTTTTGCTGCTAGA 60.426 43.478 0.30 0.00 36.54 2.43
94 95 2.848302 GCGCACTAATTTTTGCTGCTAG 59.152 45.455 0.30 0.00 36.54 3.42
95 96 2.415357 GGCGCACTAATTTTTGCTGCTA 60.415 45.455 10.83 0.00 37.93 3.49
96 97 1.669795 GGCGCACTAATTTTTGCTGCT 60.670 47.619 10.83 0.00 37.93 4.24
97 98 0.715551 GGCGCACTAATTTTTGCTGC 59.284 50.000 10.83 13.98 36.54 5.25
98 99 2.063156 TGGCGCACTAATTTTTGCTG 57.937 45.000 10.83 4.70 36.54 4.41
99 100 2.035832 AGTTGGCGCACTAATTTTTGCT 59.964 40.909 10.83 0.00 36.54 3.91
100 101 2.403259 AGTTGGCGCACTAATTTTTGC 58.597 42.857 10.83 1.71 35.26 3.68
101 102 3.184178 CCAAGTTGGCGCACTAATTTTTG 59.816 43.478 9.46 7.68 0.00 2.44
102 103 3.181470 ACCAAGTTGGCGCACTAATTTTT 60.181 39.130 22.25 0.00 42.67 1.94
103 104 2.364002 ACCAAGTTGGCGCACTAATTTT 59.636 40.909 22.25 0.00 42.67 1.82
104 105 1.960689 ACCAAGTTGGCGCACTAATTT 59.039 42.857 22.25 1.30 42.67 1.82
105 106 1.616159 ACCAAGTTGGCGCACTAATT 58.384 45.000 22.25 0.00 42.67 1.40
106 107 2.356135 CTACCAAGTTGGCGCACTAAT 58.644 47.619 22.25 2.14 42.67 1.73
107 108 1.803334 CTACCAAGTTGGCGCACTAA 58.197 50.000 22.25 0.00 42.67 2.24
108 109 0.672401 GCTACCAAGTTGGCGCACTA 60.672 55.000 22.25 5.45 42.67 2.74
109 110 1.966451 GCTACCAAGTTGGCGCACT 60.966 57.895 22.25 1.02 42.67 4.40
110 111 1.791103 TTGCTACCAAGTTGGCGCAC 61.791 55.000 29.02 15.53 43.72 5.34
111 112 0.893270 ATTGCTACCAAGTTGGCGCA 60.893 50.000 26.73 26.73 42.67 6.09
112 113 1.091537 TATTGCTACCAAGTTGGCGC 58.908 50.000 22.25 22.76 42.67 6.53
113 114 1.062002 CGTATTGCTACCAAGTTGGCG 59.938 52.381 22.25 14.00 42.67 5.69
114 115 1.202143 GCGTATTGCTACCAAGTTGGC 60.202 52.381 22.25 8.68 40.37 4.52
115 116 1.400494 GGCGTATTGCTACCAAGTTGG 59.600 52.381 20.76 20.76 45.43 3.77
116 117 2.080693 TGGCGTATTGCTACCAAGTTG 58.919 47.619 0.00 0.00 45.43 3.16
117 118 2.483014 TGGCGTATTGCTACCAAGTT 57.517 45.000 0.00 0.00 45.43 2.66
124 125 1.080298 CGTTTGGTGGCGTATTGCTA 58.920 50.000 0.00 0.00 45.43 3.49
125 126 1.873165 CGTTTGGTGGCGTATTGCT 59.127 52.632 0.00 0.00 45.43 3.91
126 127 1.799916 GCGTTTGGTGGCGTATTGC 60.800 57.895 0.00 0.00 45.38 3.56
127 128 1.511043 CGCGTTTGGTGGCGTATTG 60.511 57.895 0.00 0.00 46.79 1.90
128 129 2.864589 CGCGTTTGGTGGCGTATT 59.135 55.556 0.00 0.00 46.79 1.89
133 134 2.775032 TACTCTCCGCGTTTGGTGGC 62.775 60.000 4.92 0.00 46.36 5.01
135 136 0.319211 TGTACTCTCCGCGTTTGGTG 60.319 55.000 4.92 0.00 0.00 4.17
136 137 0.038526 CTGTACTCTCCGCGTTTGGT 60.039 55.000 4.92 1.11 0.00 3.67
137 138 1.352156 GCTGTACTCTCCGCGTTTGG 61.352 60.000 4.92 0.00 0.00 3.28
138 139 0.388649 AGCTGTACTCTCCGCGTTTG 60.389 55.000 4.92 0.00 0.00 2.93
139 140 0.109226 GAGCTGTACTCTCCGCGTTT 60.109 55.000 4.92 0.00 42.62 3.60
140 141 1.241990 TGAGCTGTACTCTCCGCGTT 61.242 55.000 4.92 0.00 46.41 4.84
141 142 1.032657 ATGAGCTGTACTCTCCGCGT 61.033 55.000 4.92 0.00 46.41 6.01
142 143 0.593518 CATGAGCTGTACTCTCCGCG 60.594 60.000 0.00 0.00 46.41 6.46
143 144 0.741326 TCATGAGCTGTACTCTCCGC 59.259 55.000 0.00 0.14 46.41 5.54
144 145 3.182967 GTTTCATGAGCTGTACTCTCCG 58.817 50.000 0.00 5.20 46.41 4.63
145 146 3.182967 CGTTTCATGAGCTGTACTCTCC 58.817 50.000 0.00 0.00 46.41 3.71
146 147 3.182967 CCGTTTCATGAGCTGTACTCTC 58.817 50.000 0.00 8.24 46.41 3.20
147 148 2.093973 CCCGTTTCATGAGCTGTACTCT 60.094 50.000 0.00 0.00 46.41 3.24
148 149 2.271800 CCCGTTTCATGAGCTGTACTC 58.728 52.381 0.00 0.00 46.45 2.59
149 150 1.066143 CCCCGTTTCATGAGCTGTACT 60.066 52.381 0.00 0.00 0.00 2.73
150 151 1.369625 CCCCGTTTCATGAGCTGTAC 58.630 55.000 0.00 0.00 0.00 2.90
151 152 0.251916 CCCCCGTTTCATGAGCTGTA 59.748 55.000 0.00 0.00 0.00 2.74
152 153 1.002134 CCCCCGTTTCATGAGCTGT 60.002 57.895 0.00 0.00 0.00 4.40
153 154 0.322456 TTCCCCCGTTTCATGAGCTG 60.322 55.000 0.00 0.00 0.00 4.24
154 155 0.035056 CTTCCCCCGTTTCATGAGCT 60.035 55.000 0.00 0.00 0.00 4.09
155 156 1.032114 CCTTCCCCCGTTTCATGAGC 61.032 60.000 0.00 0.00 0.00 4.26
156 157 0.328258 ACCTTCCCCCGTTTCATGAG 59.672 55.000 0.00 0.00 0.00 2.90
157 158 0.774908 AACCTTCCCCCGTTTCATGA 59.225 50.000 0.00 0.00 0.00 3.07
158 159 2.365582 CTAACCTTCCCCCGTTTCATG 58.634 52.381 0.00 0.00 0.00 3.07
159 160 1.340697 GCTAACCTTCCCCCGTTTCAT 60.341 52.381 0.00 0.00 0.00 2.57
160 161 0.037160 GCTAACCTTCCCCCGTTTCA 59.963 55.000 0.00 0.00 0.00 2.69
161 162 0.037160 TGCTAACCTTCCCCCGTTTC 59.963 55.000 0.00 0.00 0.00 2.78
162 163 0.702316 ATGCTAACCTTCCCCCGTTT 59.298 50.000 0.00 0.00 0.00 3.60
163 164 0.255033 GATGCTAACCTTCCCCCGTT 59.745 55.000 0.00 0.00 0.00 4.44
164 165 0.620700 AGATGCTAACCTTCCCCCGT 60.621 55.000 0.00 0.00 0.00 5.28
165 166 0.546598 AAGATGCTAACCTTCCCCCG 59.453 55.000 0.00 0.00 0.00 5.73
166 167 1.410224 CCAAGATGCTAACCTTCCCCC 60.410 57.143 0.00 0.00 0.00 5.40
167 168 2.024306 GCCAAGATGCTAACCTTCCCC 61.024 57.143 0.00 0.00 0.00 4.81
168 169 1.064389 AGCCAAGATGCTAACCTTCCC 60.064 52.381 0.00 0.00 40.56 3.97
169 170 2.426842 AGCCAAGATGCTAACCTTCC 57.573 50.000 0.00 0.00 40.56 3.46
170 171 3.507622 ACAAAGCCAAGATGCTAACCTTC 59.492 43.478 0.00 0.00 41.80 3.46
171 172 3.500343 ACAAAGCCAAGATGCTAACCTT 58.500 40.909 0.00 0.00 41.80 3.50
172 173 3.084786 GACAAAGCCAAGATGCTAACCT 58.915 45.455 0.00 0.00 41.80 3.50
173 174 3.084786 AGACAAAGCCAAGATGCTAACC 58.915 45.455 0.00 0.00 41.80 2.85
174 175 4.773323 AAGACAAAGCCAAGATGCTAAC 57.227 40.909 0.00 0.00 41.80 2.34
175 176 5.106157 GCTAAAGACAAAGCCAAGATGCTAA 60.106 40.000 0.00 0.00 41.80 3.09
176 177 4.396166 GCTAAAGACAAAGCCAAGATGCTA 59.604 41.667 0.00 0.00 41.80 3.49
177 178 3.192212 GCTAAAGACAAAGCCAAGATGCT 59.808 43.478 0.00 0.00 45.43 3.79
178 179 3.192212 AGCTAAAGACAAAGCCAAGATGC 59.808 43.478 0.00 0.00 39.64 3.91
179 180 6.493116 CATAGCTAAAGACAAAGCCAAGATG 58.507 40.000 0.00 0.00 39.64 2.90
180 181 5.067023 GCATAGCTAAAGACAAAGCCAAGAT 59.933 40.000 0.00 0.00 39.64 2.40
181 182 4.396166 GCATAGCTAAAGACAAAGCCAAGA 59.604 41.667 0.00 0.00 39.64 3.02
182 183 4.156556 TGCATAGCTAAAGACAAAGCCAAG 59.843 41.667 0.00 0.00 39.64 3.61
183 184 4.078537 TGCATAGCTAAAGACAAAGCCAA 58.921 39.130 0.00 0.00 39.64 4.52
184 185 3.684908 TGCATAGCTAAAGACAAAGCCA 58.315 40.909 0.00 0.00 39.64 4.75
185 186 4.156739 ACTTGCATAGCTAAAGACAAAGCC 59.843 41.667 10.04 0.00 39.64 4.35
186 187 5.091431 CACTTGCATAGCTAAAGACAAAGC 58.909 41.667 10.04 0.00 39.08 3.51
187 188 5.412594 TCCACTTGCATAGCTAAAGACAAAG 59.587 40.000 10.04 5.80 0.00 2.77
188 189 5.312895 TCCACTTGCATAGCTAAAGACAAA 58.687 37.500 10.04 0.00 0.00 2.83
189 190 4.905429 TCCACTTGCATAGCTAAAGACAA 58.095 39.130 10.04 5.97 0.00 3.18
190 191 4.551702 TCCACTTGCATAGCTAAAGACA 57.448 40.909 10.04 0.00 0.00 3.41
215 216 8.946085 TCAAGTGGCTCTAATTAAACATGTAAG 58.054 33.333 0.00 0.00 0.00 2.34
220 221 5.163754 GCGTCAAGTGGCTCTAATTAAACAT 60.164 40.000 0.00 0.00 0.00 2.71
226 228 2.472695 TGCGTCAAGTGGCTCTAATT 57.527 45.000 0.00 0.00 0.00 1.40
235 237 4.732285 ACAATTAGTCTTGCGTCAAGTG 57.268 40.909 15.83 10.09 41.66 3.16
262 264 3.678289 TGATTGGATCAACTGTCCACAG 58.322 45.455 5.11 5.11 45.05 3.66
264 267 3.181493 GCATGATTGGATCAACTGTCCAC 60.181 47.826 0.00 0.00 45.05 4.02
268 271 4.084287 AGTTGCATGATTGGATCAACTGT 58.916 39.130 10.58 0.00 43.72 3.55
270 273 5.163581 GCTTAGTTGCATGATTGGATCAACT 60.164 40.000 14.35 14.35 46.09 3.16
273 276 4.529897 AGCTTAGTTGCATGATTGGATCA 58.470 39.130 0.00 0.00 44.55 2.92
277 280 3.881688 AGCTAGCTTAGTTGCATGATTGG 59.118 43.478 12.68 0.00 34.99 3.16
318 340 2.104792 TGTAGGCTGAATGATGCTACCC 59.895 50.000 0.00 0.00 0.00 3.69
319 341 3.134458 GTGTAGGCTGAATGATGCTACC 58.866 50.000 0.00 0.00 0.00 3.18
341 363 2.308570 TGTGTGTATGGATGGGAAAGCT 59.691 45.455 0.00 0.00 0.00 3.74
348 371 9.787532 CTTAGTTAATTTTGTGTGTATGGATGG 57.212 33.333 0.00 0.00 0.00 3.51
366 398 3.131223 AGCTCAGATGCTCGCTTAGTTAA 59.869 43.478 0.00 0.00 39.34 2.01
372 404 0.249405 GCTAGCTCAGATGCTCGCTT 60.249 55.000 7.70 0.00 44.82 4.68
393 429 2.749044 CTCCATGGCTGCGCTTGT 60.749 61.111 9.73 0.00 0.00 3.16
509 545 2.169352 ACTGAGGGATTTGATCTCACGG 59.831 50.000 0.00 0.00 34.33 4.94
510 546 3.533606 ACTGAGGGATTTGATCTCACG 57.466 47.619 0.00 0.00 34.33 4.35
561 601 3.708631 GGATCCTCCTCTGACATCTTCAA 59.291 47.826 3.84 0.00 30.67 2.69
588 631 5.715439 TTCATCCACACCTTATCCTGAAT 57.285 39.130 0.00 0.00 0.00 2.57
664 707 3.418047 TGTATCTTCACTCCGACACTCA 58.582 45.455 0.00 0.00 0.00 3.41
716 760 2.945668 CCTTCATCTTCCCCAACGAATC 59.054 50.000 0.00 0.00 0.00 2.52
771 825 3.529533 CACCTCGATGATCTGCTTCTTT 58.470 45.455 0.00 0.00 0.00 2.52
839 917 8.089625 TCTAGGATCAATGGTTGTATTCTTGA 57.910 34.615 0.00 0.00 0.00 3.02
914 992 4.698780 ACAATTTAACTACCTCGGCCTTTC 59.301 41.667 0.00 0.00 0.00 2.62
915 993 4.659115 ACAATTTAACTACCTCGGCCTTT 58.341 39.130 0.00 0.00 0.00 3.11
928 1006 6.560711 ACACACCTTCAGTCAACAATTTAAC 58.439 36.000 0.00 0.00 0.00 2.01
1125 1203 0.319727 CGTACCGTTGGCCACTAACA 60.320 55.000 3.88 0.00 0.00 2.41
1165 1243 4.890158 TCTTGGAGATGAGCTGTTGTAA 57.110 40.909 0.00 0.00 0.00 2.41
1310 1448 7.122055 TGAACTTCACTACAAAACATTTGACCT 59.878 33.333 9.62 0.00 0.00 3.85
1319 1457 7.043391 GCAGGAAAATGAACTTCACTACAAAAC 60.043 37.037 0.00 0.00 0.00 2.43
1361 1501 6.212187 TCTCTCTCTCTCTCTCTCTCCATATG 59.788 46.154 0.00 0.00 0.00 1.78
1379 1532 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1382 1535 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1384 1537 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1385 1538 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1386 1539 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1387 1540 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1388 1541 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1389 1542 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1390 1543 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1391 1544 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1392 1545 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1393 1546 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1394 1547 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1395 1548 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
1396 1549 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
1397 1550 5.010213 GGTACTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
1398 1551 4.896482 GGTACTCTCTCTCTCTCTCTCTCT 59.104 50.000 0.00 0.00 0.00 3.10
1399 1552 4.039366 GGGTACTCTCTCTCTCTCTCTCTC 59.961 54.167 0.00 0.00 0.00 3.20
1400 1553 3.967987 GGGTACTCTCTCTCTCTCTCTCT 59.032 52.174 0.00 0.00 0.00 3.10
1401 1554 3.243771 CGGGTACTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
1402 1555 2.698797 CGGGTACTCTCTCTCTCTCTCT 59.301 54.545 0.00 0.00 0.00 3.10
1403 1556 2.696707 TCGGGTACTCTCTCTCTCTCTC 59.303 54.545 0.00 0.00 0.00 3.20
1404 1557 2.754465 TCGGGTACTCTCTCTCTCTCT 58.246 52.381 0.00 0.00 0.00 3.10
1405 1558 3.547054 TTCGGGTACTCTCTCTCTCTC 57.453 52.381 0.00 0.00 0.00 3.20
1406 1559 3.881220 CTTTCGGGTACTCTCTCTCTCT 58.119 50.000 0.00 0.00 0.00 3.10
1407 1560 2.356695 GCTTTCGGGTACTCTCTCTCTC 59.643 54.545 0.00 0.00 0.00 3.20
1408 1561 2.291024 TGCTTTCGGGTACTCTCTCTCT 60.291 50.000 0.00 0.00 0.00 3.10
1416 1569 8.362464 TCATAAGATATATGCTTTCGGGTACT 57.638 34.615 0.00 0.00 0.00 2.73
1503 1666 8.642432 TGTGGATCTAACCATACTGAGATTTAG 58.358 37.037 0.00 0.00 42.17 1.85
1514 1677 3.901844 GCCTAGGTGTGGATCTAACCATA 59.098 47.826 11.31 0.00 42.17 2.74
1610 3783 1.971695 GGAAAGGGTGGCGGAACAG 60.972 63.158 0.00 0.00 0.00 3.16
1616 3789 0.881796 GAAAAGAGGAAAGGGTGGCG 59.118 55.000 0.00 0.00 0.00 5.69
1666 3839 6.613271 AGATTATATGGAGAGTTGGGCGATAT 59.387 38.462 0.00 0.00 0.00 1.63
1693 3866 7.195374 AGGGAGTACATGCTAATTAGTTTGA 57.805 36.000 13.91 0.00 0.00 2.69
1719 3892 2.928116 CCTACGTTCCGATTTCTGAACC 59.072 50.000 0.00 0.00 36.95 3.62
1724 3897 2.454538 ACTCCCTACGTTCCGATTTCT 58.545 47.619 0.00 0.00 0.00 2.52
1778 3987 9.490663 GCTGATACAAGTGTTAAACATTCATAC 57.509 33.333 0.00 0.00 0.00 2.39
1779 3988 9.448438 AGCTGATACAAGTGTTAAACATTCATA 57.552 29.630 0.00 0.00 0.00 2.15
1780 3989 8.340618 AGCTGATACAAGTGTTAAACATTCAT 57.659 30.769 0.00 0.00 0.00 2.57
1781 3990 7.744087 AGCTGATACAAGTGTTAAACATTCA 57.256 32.000 0.00 0.00 0.00 2.57
1782 3991 9.118236 GAAAGCTGATACAAGTGTTAAACATTC 57.882 33.333 0.00 0.00 0.00 2.67
1785 3994 7.801716 AGAAAGCTGATACAAGTGTTAAACA 57.198 32.000 0.00 0.00 0.00 2.83
1799 4008 7.246171 TGTCTACTCCTTTAAGAAAGCTGAT 57.754 36.000 0.00 0.00 37.18 2.90
1812 4021 5.189736 TGCACTCCATAAATGTCTACTCCTT 59.810 40.000 0.00 0.00 0.00 3.36
1826 4035 3.000041 CACTAAAACGCTGCACTCCATA 59.000 45.455 0.00 0.00 0.00 2.74
1827 4036 1.806542 CACTAAAACGCTGCACTCCAT 59.193 47.619 0.00 0.00 0.00 3.41
1828 4037 1.225855 CACTAAAACGCTGCACTCCA 58.774 50.000 0.00 0.00 0.00 3.86
1829 4038 0.110192 GCACTAAAACGCTGCACTCC 60.110 55.000 0.00 0.00 0.00 3.85
1830 4039 0.110192 GGCACTAAAACGCTGCACTC 60.110 55.000 0.00 0.00 32.20 3.51
1831 4040 0.535102 AGGCACTAAAACGCTGCACT 60.535 50.000 0.00 0.00 36.02 4.40
1832 4041 0.385974 CAGGCACTAAAACGCTGCAC 60.386 55.000 0.00 0.00 36.02 4.57
1833 4042 1.514678 CCAGGCACTAAAACGCTGCA 61.515 55.000 0.00 0.00 36.02 4.41
1834 4043 1.210155 CCAGGCACTAAAACGCTGC 59.790 57.895 0.00 0.00 36.02 5.25
1835 4044 1.875963 CCCAGGCACTAAAACGCTG 59.124 57.895 0.00 0.00 36.02 5.18
1836 4045 1.971695 GCCCAGGCACTAAAACGCT 60.972 57.895 3.12 0.00 41.49 5.07
1837 4046 1.923227 GAGCCCAGGCACTAAAACGC 61.923 60.000 12.03 0.00 44.88 4.84
1838 4047 0.605319 TGAGCCCAGGCACTAAAACG 60.605 55.000 12.03 0.00 44.88 3.60
1839 4048 1.168714 CTGAGCCCAGGCACTAAAAC 58.831 55.000 12.03 0.00 44.88 2.43
1840 4049 1.064003 TCTGAGCCCAGGCACTAAAA 58.936 50.000 12.03 0.00 44.88 1.52
1841 4050 1.003580 CTTCTGAGCCCAGGCACTAAA 59.996 52.381 12.03 2.93 44.88 1.85
1842 4051 0.615331 CTTCTGAGCCCAGGCACTAA 59.385 55.000 12.03 3.25 44.88 2.24
1843 4052 0.545309 ACTTCTGAGCCCAGGCACTA 60.545 55.000 12.03 0.00 44.88 2.74
1844 4053 1.845205 ACTTCTGAGCCCAGGCACT 60.845 57.895 12.03 0.00 44.88 4.40
1845 4054 1.673665 CACTTCTGAGCCCAGGCAC 60.674 63.158 12.03 5.16 44.88 5.01
1846 4055 2.752358 CACTTCTGAGCCCAGGCA 59.248 61.111 12.03 0.00 44.88 4.75
1847 4056 1.919600 ATCCACTTCTGAGCCCAGGC 61.920 60.000 0.00 0.00 40.76 4.85
1848 4057 0.622665 AATCCACTTCTGAGCCCAGG 59.377 55.000 0.00 0.00 40.76 4.45
1849 4058 2.420687 GGTAATCCACTTCTGAGCCCAG 60.421 54.545 0.00 0.00 41.74 4.45
1850 4059 1.559682 GGTAATCCACTTCTGAGCCCA 59.440 52.381 0.00 0.00 0.00 5.36
1851 4060 1.473434 CGGTAATCCACTTCTGAGCCC 60.473 57.143 0.00 0.00 0.00 5.19
1852 4061 1.480954 TCGGTAATCCACTTCTGAGCC 59.519 52.381 0.00 0.00 0.00 4.70
1853 4062 2.094182 TGTCGGTAATCCACTTCTGAGC 60.094 50.000 0.00 0.00 0.00 4.26
1854 4063 3.868757 TGTCGGTAATCCACTTCTGAG 57.131 47.619 0.00 0.00 0.00 3.35
1855 4064 4.819105 AATGTCGGTAATCCACTTCTGA 57.181 40.909 0.00 0.00 0.00 3.27
1856 4065 6.538742 ACATAAATGTCGGTAATCCACTTCTG 59.461 38.462 0.00 0.00 35.87 3.02
1857 4066 6.650120 ACATAAATGTCGGTAATCCACTTCT 58.350 36.000 0.00 0.00 35.87 2.85
1858 4067 6.920569 ACATAAATGTCGGTAATCCACTTC 57.079 37.500 0.00 0.00 35.87 3.01
1859 4068 6.404293 GCAACATAAATGTCGGTAATCCACTT 60.404 38.462 0.00 0.00 40.80 3.16
1860 4069 5.065988 GCAACATAAATGTCGGTAATCCACT 59.934 40.000 0.00 0.00 40.80 4.00
1861 4070 5.065988 AGCAACATAAATGTCGGTAATCCAC 59.934 40.000 0.00 0.00 40.80 4.02
1862 4071 5.189928 AGCAACATAAATGTCGGTAATCCA 58.810 37.500 0.00 0.00 40.80 3.41
1863 4072 5.751243 AGCAACATAAATGTCGGTAATCC 57.249 39.130 0.00 0.00 40.80 3.01
1864 4073 8.342634 ACAATAGCAACATAAATGTCGGTAATC 58.657 33.333 0.00 0.00 40.80 1.75
1865 4074 8.128582 CACAATAGCAACATAAATGTCGGTAAT 58.871 33.333 0.00 0.00 40.80 1.89
1866 4075 7.334671 TCACAATAGCAACATAAATGTCGGTAA 59.665 33.333 0.00 0.00 40.80 2.85
1867 4076 6.819146 TCACAATAGCAACATAAATGTCGGTA 59.181 34.615 0.00 0.00 40.80 4.02
1868 4077 5.645929 TCACAATAGCAACATAAATGTCGGT 59.354 36.000 0.00 0.00 40.80 4.69
1869 4078 6.117911 TCACAATAGCAACATAAATGTCGG 57.882 37.500 0.00 0.00 40.80 4.79
1870 4079 7.243487 AGTTCACAATAGCAACATAAATGTCG 58.757 34.615 0.00 0.00 40.80 4.35
1871 4080 8.853345 CAAGTTCACAATAGCAACATAAATGTC 58.147 33.333 0.00 0.00 40.80 3.06
1872 4081 8.359642 ACAAGTTCACAATAGCAACATAAATGT 58.640 29.630 0.00 0.00 44.20 2.71
1873 4082 8.746922 ACAAGTTCACAATAGCAACATAAATG 57.253 30.769 0.00 0.00 0.00 2.32
1874 4083 9.762933 AAACAAGTTCACAATAGCAACATAAAT 57.237 25.926 0.00 0.00 0.00 1.40
2140 4356 2.309755 ACCATTTCAAGAGGCCTGATGA 59.690 45.455 12.00 12.04 0.00 2.92
2202 4418 8.950007 TTAAGGTATGAGGGACAATTTTCTTT 57.050 30.769 0.00 0.00 0.00 2.52
2641 4857 2.405357 GTGTCATGAAGTCGACAACTCG 59.595 50.000 19.50 3.09 43.40 4.18
2837 5053 2.162208 CACAGATTCCCCAAACACATCG 59.838 50.000 0.00 0.00 0.00 3.84
2898 5114 5.336150 TGTTTGCAATCTTCAAAGTCCAA 57.664 34.783 0.00 0.00 34.50 3.53
2924 5140 8.927411 TCTATATGTTCAAGATGATGGTTCTCA 58.073 33.333 0.00 0.00 0.00 3.27
2966 5182 1.556911 ACATGAAGGCTCAGGTACCTG 59.443 52.381 32.61 32.61 44.49 4.00
2986 5202 3.815401 GAGCTTGCTTACTTTCTCCAACA 59.185 43.478 0.00 0.00 0.00 3.33
2988 5204 3.412386 GGAGCTTGCTTACTTTCTCCAA 58.588 45.455 0.00 0.00 39.75 3.53
3025 5241 4.221703 CCAGTATCTCTAAGCACCATAGGG 59.778 50.000 0.00 0.00 41.29 3.53
3231 5447 4.664150 ATACCTTTAGACTCTGCAGCTC 57.336 45.455 9.47 5.96 0.00 4.09
3336 5570 6.948589 AGAGAAGGTTCCCTAGATTTGTAAC 58.051 40.000 0.00 0.00 31.13 2.50
3344 5578 5.493250 AGTTAGAGAGAGAAGGTTCCCTAGA 59.507 44.000 0.00 0.00 31.13 2.43
3375 5609 2.167662 CCTTACAAATTCAGGGCCGTT 58.832 47.619 0.00 0.00 0.00 4.44
3492 5726 0.393808 TCAGGGCGTAATTTCTGGGC 60.394 55.000 0.00 0.00 0.00 5.36
3493 5727 2.348411 ATCAGGGCGTAATTTCTGGG 57.652 50.000 0.00 0.00 0.00 4.45
3612 5846 4.006319 GCTTCAGGCTCTTCTGTTAATGT 58.994 43.478 0.00 0.00 38.06 2.71
3634 5868 3.769844 ACCACAGACTATGACCCTTGTAG 59.230 47.826 0.00 0.00 0.00 2.74
3706 5940 4.321899 CCCCAAACGTCAAATTCATCACAT 60.322 41.667 0.00 0.00 0.00 3.21
3773 6007 9.624697 GTTTTTGCTACATCAAATTCTATCACA 57.375 29.630 0.00 0.00 36.04 3.58
3774 6008 9.846248 AGTTTTTGCTACATCAAATTCTATCAC 57.154 29.630 0.00 0.00 36.04 3.06
3775 6009 9.844790 CAGTTTTTGCTACATCAAATTCTATCA 57.155 29.630 0.00 0.00 36.04 2.15
3778 6012 9.066892 ACTCAGTTTTTGCTACATCAAATTCTA 57.933 29.630 0.00 0.00 36.04 2.10
3779 6013 7.945134 ACTCAGTTTTTGCTACATCAAATTCT 58.055 30.769 0.00 0.00 36.04 2.40
3780 6014 8.078596 AGACTCAGTTTTTGCTACATCAAATTC 58.921 33.333 0.00 0.00 36.04 2.17
3781 6015 7.945134 AGACTCAGTTTTTGCTACATCAAATT 58.055 30.769 0.00 0.00 36.04 1.82
3782 6016 7.516198 AGACTCAGTTTTTGCTACATCAAAT 57.484 32.000 0.00 0.00 36.04 2.32
3783 6017 6.942532 AGACTCAGTTTTTGCTACATCAAA 57.057 33.333 0.00 0.00 34.47 2.69
3784 6018 7.063426 CGATAGACTCAGTTTTTGCTACATCAA 59.937 37.037 0.00 0.00 39.76 2.57
3785 6019 6.531594 CGATAGACTCAGTTTTTGCTACATCA 59.468 38.462 0.00 0.00 39.76 3.07
3786 6020 6.019479 CCGATAGACTCAGTTTTTGCTACATC 60.019 42.308 0.00 0.00 39.76 3.06
3788 6022 5.168569 CCGATAGACTCAGTTTTTGCTACA 58.831 41.667 0.00 0.00 39.76 2.74
3790 6024 5.401531 ACCGATAGACTCAGTTTTTGCTA 57.598 39.130 0.00 0.00 39.76 3.49
3807 6041 3.131577 TCAAAATCACCGCTAGTACCGAT 59.868 43.478 0.00 0.00 0.00 4.18
3830 6064 4.037927 TGGGGAGATTTTCTATTCCGAGT 58.962 43.478 0.00 0.00 0.00 4.18
3873 6107 3.072915 TCCTGCACATATCCCCATACTTG 59.927 47.826 0.00 0.00 0.00 3.16
3887 6121 2.182827 ACTCTGCTTCTATCCTGCACA 58.817 47.619 0.00 0.00 32.91 4.57
3891 6125 3.740764 GCCTCAACTCTGCTTCTATCCTG 60.741 52.174 0.00 0.00 0.00 3.86
3933 6167 1.286880 GATGTGCGTTGGCTGCTTT 59.713 52.632 0.00 0.00 40.82 3.51
4023 6257 8.940768 TCATGATCGAATTAAAGTACATGTCA 57.059 30.769 0.00 0.00 36.38 3.58
4093 6636 4.052608 TGTTCGATCTCAAAAACGCAGTA 58.947 39.130 0.00 0.00 45.00 2.74
4099 6642 8.679288 ATGATGAATTGTTCGATCTCAAAAAC 57.321 30.769 0.00 0.00 0.00 2.43
4103 6646 7.767659 AGAGAATGATGAATTGTTCGATCTCAA 59.232 33.333 14.73 4.26 0.00 3.02
4138 6681 4.724516 CCTGAGGGAGGCAGATCT 57.275 61.111 0.00 0.00 34.01 2.75
4227 6799 3.703556 TCTCTATCTGAAGGGTGCAGAAG 59.296 47.826 0.00 0.00 44.71 2.85
4318 6923 6.389622 TCTTTCTCACATTATCACGAAACG 57.610 37.500 0.00 0.00 0.00 3.60
4384 7032 6.010675 CGCATGCAATTAATTCACAAACAAG 58.989 36.000 19.57 0.00 0.00 3.16
4390 7039 4.624882 GGAAACGCATGCAATTAATTCACA 59.375 37.500 19.57 0.31 0.00 3.58
4415 7064 2.159338 GCCAAACACACATGCATAGAGG 60.159 50.000 0.00 0.00 0.00 3.69
4416 7065 2.159338 GGCCAAACACACATGCATAGAG 60.159 50.000 0.00 0.00 0.00 2.43
4417 7066 1.818060 GGCCAAACACACATGCATAGA 59.182 47.619 0.00 0.00 0.00 1.98
4418 7067 1.545136 TGGCCAAACACACATGCATAG 59.455 47.619 0.61 0.00 0.00 2.23
4419 7068 1.545136 CTGGCCAAACACACATGCATA 59.455 47.619 7.01 0.00 0.00 3.14
4420 7069 0.319083 CTGGCCAAACACACATGCAT 59.681 50.000 7.01 0.00 0.00 3.96
4421 7070 1.042003 ACTGGCCAAACACACATGCA 61.042 50.000 7.01 0.00 0.00 3.96
4422 7071 0.318955 GACTGGCCAAACACACATGC 60.319 55.000 7.01 0.00 0.00 4.06
4423 7072 1.321474 AGACTGGCCAAACACACATG 58.679 50.000 7.01 0.00 0.00 3.21
4424 7073 2.949177 TAGACTGGCCAAACACACAT 57.051 45.000 7.01 0.00 0.00 3.21
4425 7074 2.685897 GTTTAGACTGGCCAAACACACA 59.314 45.455 7.01 0.00 33.39 3.72
4426 7075 2.949644 AGTTTAGACTGGCCAAACACAC 59.050 45.455 17.35 6.32 35.17 3.82
4427 7076 3.211045 GAGTTTAGACTGGCCAAACACA 58.789 45.455 17.35 0.00 35.88 3.72
4428 7077 3.211045 TGAGTTTAGACTGGCCAAACAC 58.789 45.455 17.35 12.39 35.88 3.32
4429 7078 3.569194 TGAGTTTAGACTGGCCAAACA 57.431 42.857 17.35 0.00 35.88 2.83
4431 7080 3.882888 CAGTTGAGTTTAGACTGGCCAAA 59.117 43.478 7.01 0.00 37.67 3.28
4433 7082 2.703536 TCAGTTGAGTTTAGACTGGCCA 59.296 45.455 4.71 4.71 40.80 5.36
4435 7084 4.381411 AGTTCAGTTGAGTTTAGACTGGC 58.619 43.478 0.00 0.00 40.80 4.85
4439 7088 6.119144 TGCAAAGTTCAGTTGAGTTTAGAC 57.881 37.500 0.00 0.00 0.00 2.59
4440 7089 6.942532 ATGCAAAGTTCAGTTGAGTTTAGA 57.057 33.333 0.00 0.00 0.00 2.10
4508 7184 8.231692 TGAAGAATGACATGTTTCCAGTTAAA 57.768 30.769 0.00 0.00 0.00 1.52
4536 7212 1.402852 CGACGACATCTTCTGCCTGAA 60.403 52.381 0.00 0.00 0.00 3.02
4537 7213 0.171231 CGACGACATCTTCTGCCTGA 59.829 55.000 0.00 0.00 0.00 3.86
4539 7215 1.107114 ATCGACGACATCTTCTGCCT 58.893 50.000 0.00 0.00 0.00 4.75
4540 7216 1.203928 CATCGACGACATCTTCTGCC 58.796 55.000 0.00 0.00 0.00 4.85
4568 7247 0.036164 TTGGTGTCATTCTCCCACGG 59.964 55.000 0.00 0.00 0.00 4.94
4579 7258 2.792500 CACCTTGTGCTTGGTGTCA 58.208 52.632 4.18 0.00 46.18 3.58
4609 8911 5.083533 AGACCTCTTATGTTCTGAGCTTG 57.916 43.478 0.00 0.00 0.00 4.01
4622 8924 4.878971 CAGATTCAGAGTCGAGACCTCTTA 59.121 45.833 1.48 0.00 0.00 2.10
4724 9103 7.208777 TGGTGCCAAATTATATATGCTTGTTG 58.791 34.615 0.00 0.00 0.00 3.33
4729 9108 5.718130 AGCATGGTGCCAAATTATATATGCT 59.282 36.000 0.00 0.00 46.52 3.79
4783 9165 1.019673 CCGGTTCTCATGCAATCTGG 58.980 55.000 0.00 0.00 0.00 3.86
4790 9172 1.734465 CTTTCAGTCCGGTTCTCATGC 59.266 52.381 0.00 0.00 0.00 4.06
4799 9181 1.132643 CTACTCCGTCTTTCAGTCCGG 59.867 57.143 0.00 0.00 41.75 5.14
4801 9183 1.135053 GCCTACTCCGTCTTTCAGTCC 60.135 57.143 0.00 0.00 0.00 3.85
4803 9185 0.526662 CGCCTACTCCGTCTTTCAGT 59.473 55.000 0.00 0.00 0.00 3.41
4804 9186 0.809385 TCGCCTACTCCGTCTTTCAG 59.191 55.000 0.00 0.00 0.00 3.02
4805 9187 1.201647 CTTCGCCTACTCCGTCTTTCA 59.798 52.381 0.00 0.00 0.00 2.69
4806 9188 1.471684 TCTTCGCCTACTCCGTCTTTC 59.528 52.381 0.00 0.00 0.00 2.62
4810 9192 1.093159 TCTTCTTCGCCTACTCCGTC 58.907 55.000 0.00 0.00 0.00 4.79
4811 9193 1.405821 CATCTTCTTCGCCTACTCCGT 59.594 52.381 0.00 0.00 0.00 4.69
4812 9194 1.866063 GCATCTTCTTCGCCTACTCCG 60.866 57.143 0.00 0.00 0.00 4.63
4846 9229 0.653636 TTGTTTGTCGTTGGCTCGTC 59.346 50.000 3.16 0.00 0.00 4.20
4851 9234 2.844122 ACTTCTTGTTTGTCGTTGGC 57.156 45.000 0.00 0.00 0.00 4.52
4852 9235 3.303791 GCCTACTTCTTGTTTGTCGTTGG 60.304 47.826 0.00 0.00 0.00 3.77
4853 9236 3.311322 TGCCTACTTCTTGTTTGTCGTTG 59.689 43.478 0.00 0.00 0.00 4.10
4855 9238 3.131396 CTGCCTACTTCTTGTTTGTCGT 58.869 45.455 0.00 0.00 0.00 4.34
4856 9239 3.390135 TCTGCCTACTTCTTGTTTGTCG 58.610 45.455 0.00 0.00 0.00 4.35
4857 9240 4.381411 ACTCTGCCTACTTCTTGTTTGTC 58.619 43.478 0.00 0.00 0.00 3.18
4858 9241 4.423625 ACTCTGCCTACTTCTTGTTTGT 57.576 40.909 0.00 0.00 0.00 2.83
4859 9242 4.932200 CCTACTCTGCCTACTTCTTGTTTG 59.068 45.833 0.00 0.00 0.00 2.93
4860 9243 4.838986 TCCTACTCTGCCTACTTCTTGTTT 59.161 41.667 0.00 0.00 0.00 2.83
4861 9244 4.417437 TCCTACTCTGCCTACTTCTTGTT 58.583 43.478 0.00 0.00 0.00 2.83
4862 9245 4.020543 CTCCTACTCTGCCTACTTCTTGT 58.979 47.826 0.00 0.00 0.00 3.16
4863 9246 4.274147 TCTCCTACTCTGCCTACTTCTTG 58.726 47.826 0.00 0.00 0.00 3.02
4864 9247 4.532834 CTCTCCTACTCTGCCTACTTCTT 58.467 47.826 0.00 0.00 0.00 2.52
4870 9253 0.186386 GCCCTCTCCTACTCTGCCTA 59.814 60.000 0.00 0.00 0.00 3.93
4878 9261 0.755686 CCATGACAGCCCTCTCCTAC 59.244 60.000 0.00 0.00 0.00 3.18
4891 9274 0.037326 TGCGTCCTTGTCTCCATGAC 60.037 55.000 0.00 0.00 45.54 3.06
4892 9275 0.247460 CTGCGTCCTTGTCTCCATGA 59.753 55.000 0.00 0.00 0.00 3.07
4900 9283 3.322466 CCCCTCCTGCGTCCTTGT 61.322 66.667 0.00 0.00 0.00 3.16
4905 9288 1.369321 GATCATCCCCTCCTGCGTC 59.631 63.158 0.00 0.00 0.00 5.19
4907 9290 1.370437 CTGATCATCCCCTCCTGCG 59.630 63.158 0.00 0.00 0.00 5.18
4916 9299 2.111878 CCCGGCACCTGATCATCC 59.888 66.667 0.00 0.00 0.00 3.51
4917 9300 1.070445 CTCCCGGCACCTGATCATC 59.930 63.158 0.00 0.00 0.00 2.92
4949 9332 2.413765 TTTTTCGTTGGGCGTGCC 59.586 55.556 1.16 1.16 42.13 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.