Multiple sequence alignment - TraesCS6B01G446500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G446500 chr6B 100.000 3599 0 0 1 3599 707588880 707592478 0.000000e+00 6647
1 TraesCS6B01G446500 chr6B 98.369 2882 37 5 718 3599 536839746 536836875 0.000000e+00 5053
2 TraesCS6B01G446500 chr6B 96.629 534 16 1 186 717 707613145 707613678 0.000000e+00 885
3 TraesCS6B01G446500 chr6B 92.710 535 36 3 186 717 707333094 707333628 0.000000e+00 769
4 TraesCS6B01G446500 chr6B 96.237 186 7 0 1 186 707332847 707333032 4.510000e-79 305
5 TraesCS6B01G446500 chr6B 96.237 186 7 0 1 186 707612898 707613083 4.510000e-79 305
6 TraesCS6B01G446500 chr6B 97.794 136 3 0 582 717 707666503 707666638 6.010000e-58 235
7 TraesCS6B01G446500 chr6B 97.619 84 2 0 1 84 707230392 707230309 1.040000e-30 145
8 TraesCS6B01G446500 chr1A 98.682 2883 37 1 717 3599 582543180 582540299 0.000000e+00 5112
9 TraesCS6B01G446500 chr6A 98.681 2882 36 2 718 3599 175630095 175632974 0.000000e+00 5110
10 TraesCS6B01G446500 chr6A 96.933 163 5 0 1 163 610525129 610525291 1.270000e-69 274
11 TraesCS6B01G446500 chr2A 98.648 2884 38 1 716 3599 72953331 72956213 0.000000e+00 5108
12 TraesCS6B01G446500 chr2A 99.038 208 2 0 2914 3121 507382765 507382558 1.220000e-99 374
13 TraesCS6B01G446500 chr4A 98.577 2882 40 1 718 3599 612039984 612042864 0.000000e+00 5094
14 TraesCS6B01G446500 chr7A 98.577 2882 38 3 718 3599 652482591 652479713 0.000000e+00 5092
15 TraesCS6B01G446500 chr7A 96.947 2915 55 5 717 3599 299415303 299418215 0.000000e+00 4859
16 TraesCS6B01G446500 chr3B 97.849 2882 39 3 718 3599 344147567 344144709 0.000000e+00 4957
17 TraesCS6B01G446500 chr2B 98.418 2213 21 4 715 2926 183540038 183542237 0.000000e+00 3880


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G446500 chr6B 707588880 707592478 3598 False 6647 6647 100.0000 1 3599 1 chr6B.!!$F1 3598
1 TraesCS6B01G446500 chr6B 536836875 536839746 2871 True 5053 5053 98.3690 718 3599 1 chr6B.!!$R1 2881
2 TraesCS6B01G446500 chr6B 707612898 707613678 780 False 595 885 96.4330 1 717 2 chr6B.!!$F4 716
3 TraesCS6B01G446500 chr6B 707332847 707333628 781 False 537 769 94.4735 1 717 2 chr6B.!!$F3 716
4 TraesCS6B01G446500 chr1A 582540299 582543180 2881 True 5112 5112 98.6820 717 3599 1 chr1A.!!$R1 2882
5 TraesCS6B01G446500 chr6A 175630095 175632974 2879 False 5110 5110 98.6810 718 3599 1 chr6A.!!$F1 2881
6 TraesCS6B01G446500 chr2A 72953331 72956213 2882 False 5108 5108 98.6480 716 3599 1 chr2A.!!$F1 2883
7 TraesCS6B01G446500 chr4A 612039984 612042864 2880 False 5094 5094 98.5770 718 3599 1 chr4A.!!$F1 2881
8 TraesCS6B01G446500 chr7A 652479713 652482591 2878 True 5092 5092 98.5770 718 3599 1 chr7A.!!$R1 2881
9 TraesCS6B01G446500 chr7A 299415303 299418215 2912 False 4859 4859 96.9470 717 3599 1 chr7A.!!$F1 2882
10 TraesCS6B01G446500 chr3B 344144709 344147567 2858 True 4957 4957 97.8490 718 3599 1 chr3B.!!$R1 2881
11 TraesCS6B01G446500 chr2B 183540038 183542237 2199 False 3880 3880 98.4180 715 2926 1 chr2B.!!$F1 2211

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 363 0.029567 GGACACCATCTCTAGCGTCG 59.970 60.0 0.00 0.0 0.00 5.12 F
626 627 0.032515 TTCGATCCTGGCTACCCTGA 60.033 55.0 0.00 0.0 32.15 3.86 F
637 638 0.108615 CTACCCTGAGCACGAGGTTG 60.109 60.0 0.41 0.0 33.70 3.77 F
642 643 0.668706 CTGAGCACGAGGTTGGTGAG 60.669 60.0 0.00 0.0 37.60 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2084 2487 2.300437 GAGTAAGTTGCTGGGTCTCTGT 59.700 50.0 0.00 0.0 0.00 3.41 R
2219 2622 2.493414 AGCTCTGCATTCTTCAGCTT 57.507 45.0 0.00 0.0 37.10 3.74 R
2361 2764 3.149981 CCCTTGAACTTCTCCTTCAACC 58.850 50.0 0.00 0.0 34.60 3.77 R
3084 3491 2.968574 GAGTGAGCTCATTGGGGATCTA 59.031 50.0 21.47 0.0 41.29 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.912771 ACCGTGTCTTTGACATCAACA 58.087 42.857 3.65 0.00 44.63 3.33
60 61 4.324267 TGACATCAACAGAGAGTAGTCGA 58.676 43.478 0.00 0.00 0.00 4.20
72 73 1.068474 GTAGTCGAACGTTGCTGCAT 58.932 50.000 5.00 0.00 0.00 3.96
73 74 1.459592 GTAGTCGAACGTTGCTGCATT 59.540 47.619 5.00 0.00 0.00 3.56
74 75 0.235665 AGTCGAACGTTGCTGCATTG 59.764 50.000 5.00 1.15 0.00 2.82
75 76 0.725784 GTCGAACGTTGCTGCATTGG 60.726 55.000 5.00 0.00 0.00 3.16
76 77 2.082366 CGAACGTTGCTGCATTGGC 61.082 57.895 5.00 0.00 41.68 4.52
77 78 2.050168 AACGTTGCTGCATTGGCG 60.050 55.556 1.84 8.85 45.35 5.69
85 86 3.602103 TGCATTGGCGGATGAACC 58.398 55.556 5.02 0.00 45.35 3.62
86 87 1.001020 TGCATTGGCGGATGAACCT 60.001 52.632 5.02 0.00 45.35 3.50
87 88 1.314534 TGCATTGGCGGATGAACCTG 61.315 55.000 5.02 0.00 45.35 4.00
88 89 2.008268 GCATTGGCGGATGAACCTGG 62.008 60.000 5.02 0.00 36.31 4.45
89 90 1.754234 ATTGGCGGATGAACCTGGC 60.754 57.895 0.00 0.00 37.87 4.85
90 91 4.776322 TGGCGGATGAACCTGGCG 62.776 66.667 0.00 0.00 39.24 5.69
91 92 4.467084 GGCGGATGAACCTGGCGA 62.467 66.667 0.00 0.00 36.31 5.54
92 93 3.195698 GCGGATGAACCTGGCGAC 61.196 66.667 0.00 0.00 36.31 5.19
93 94 2.885644 CGGATGAACCTGGCGACG 60.886 66.667 0.00 0.00 36.31 5.12
94 95 3.195698 GGATGAACCTGGCGACGC 61.196 66.667 12.43 12.43 35.41 5.19
95 96 2.125512 GATGAACCTGGCGACGCT 60.126 61.111 20.77 0.00 0.00 5.07
96 97 2.434884 ATGAACCTGGCGACGCTG 60.435 61.111 20.77 12.64 0.00 5.18
97 98 3.958147 ATGAACCTGGCGACGCTGG 62.958 63.158 20.77 22.44 0.00 4.85
117 118 2.361610 CCAAAGCGGTGGCCTGAT 60.362 61.111 3.32 0.00 41.24 2.90
118 119 2.703798 CCAAAGCGGTGGCCTGATG 61.704 63.158 3.32 0.00 41.24 3.07
119 120 1.675310 CAAAGCGGTGGCCTGATGA 60.675 57.895 3.32 0.00 41.24 2.92
120 121 1.675641 AAAGCGGTGGCCTGATGAC 60.676 57.895 3.32 0.00 41.24 3.06
121 122 2.410322 AAAGCGGTGGCCTGATGACA 62.410 55.000 3.32 0.00 41.24 3.58
122 123 2.124570 GCGGTGGCCTGATGACAT 60.125 61.111 3.32 0.00 0.00 3.06
123 124 2.475466 GCGGTGGCCTGATGACATG 61.475 63.158 3.32 0.00 0.00 3.21
124 125 1.820906 CGGTGGCCTGATGACATGG 60.821 63.158 3.32 0.00 0.00 3.66
125 126 1.609239 GGTGGCCTGATGACATGGA 59.391 57.895 3.32 0.00 0.00 3.41
126 127 0.184451 GGTGGCCTGATGACATGGAT 59.816 55.000 3.32 0.00 0.00 3.41
127 128 1.421268 GGTGGCCTGATGACATGGATA 59.579 52.381 3.32 0.00 0.00 2.59
128 129 2.040813 GGTGGCCTGATGACATGGATAT 59.959 50.000 3.32 0.00 0.00 1.63
129 130 3.499202 GGTGGCCTGATGACATGGATATT 60.499 47.826 3.32 0.00 0.00 1.28
130 131 4.147321 GTGGCCTGATGACATGGATATTT 58.853 43.478 3.32 0.00 0.00 1.40
131 132 4.217118 GTGGCCTGATGACATGGATATTTC 59.783 45.833 3.32 0.00 0.00 2.17
132 133 4.105217 TGGCCTGATGACATGGATATTTCT 59.895 41.667 3.32 0.00 0.00 2.52
133 134 5.310331 TGGCCTGATGACATGGATATTTCTA 59.690 40.000 3.32 0.00 0.00 2.10
134 135 6.012245 TGGCCTGATGACATGGATATTTCTAT 60.012 38.462 3.32 0.00 0.00 1.98
135 136 6.541641 GGCCTGATGACATGGATATTTCTATC 59.458 42.308 0.00 0.00 34.18 2.08
136 137 7.337167 GCCTGATGACATGGATATTTCTATCT 58.663 38.462 0.00 0.00 35.14 1.98
137 138 7.495279 GCCTGATGACATGGATATTTCTATCTC 59.505 40.741 0.00 0.00 35.14 2.75
138 139 7.986320 CCTGATGACATGGATATTTCTATCTCC 59.014 40.741 0.00 0.00 35.14 3.71
139 140 8.439964 TGATGACATGGATATTTCTATCTCCA 57.560 34.615 0.00 0.00 40.22 3.86
140 141 8.537858 TGATGACATGGATATTTCTATCTCCAG 58.462 37.037 0.00 0.00 39.55 3.86
141 142 7.250032 TGACATGGATATTTCTATCTCCAGG 57.750 40.000 0.00 0.94 41.77 4.45
143 144 7.251321 ACATGGATATTTCTATCTCCAGGTC 57.749 40.000 2.18 0.00 44.06 3.85
144 145 5.984695 TGGATATTTCTATCTCCAGGTCG 57.015 43.478 0.00 0.00 33.44 4.79
145 146 4.772624 TGGATATTTCTATCTCCAGGTCGG 59.227 45.833 0.00 0.00 33.44 4.79
146 147 4.773149 GGATATTTCTATCTCCAGGTCGGT 59.227 45.833 0.00 0.00 35.14 4.69
147 148 5.336849 GGATATTTCTATCTCCAGGTCGGTG 60.337 48.000 0.00 0.00 35.14 4.94
148 149 2.820728 TTCTATCTCCAGGTCGGTGA 57.179 50.000 0.00 0.00 41.44 4.02
149 150 2.054232 TCTATCTCCAGGTCGGTGAC 57.946 55.000 0.00 0.00 40.05 3.67
150 151 1.283905 TCTATCTCCAGGTCGGTGACA 59.716 52.381 0.00 0.00 40.05 3.58
151 152 2.091830 TCTATCTCCAGGTCGGTGACAT 60.092 50.000 0.00 0.00 40.05 3.06
152 153 1.573108 ATCTCCAGGTCGGTGACATT 58.427 50.000 0.00 0.00 40.05 2.71
153 154 0.608130 TCTCCAGGTCGGTGACATTG 59.392 55.000 0.00 0.00 32.22 2.82
154 155 0.391661 CTCCAGGTCGGTGACATTGG 60.392 60.000 11.36 11.36 38.95 3.16
155 156 1.377202 CCAGGTCGGTGACATTGGG 60.377 63.158 10.26 0.00 36.14 4.12
156 157 1.377202 CAGGTCGGTGACATTGGGG 60.377 63.158 0.00 0.00 33.68 4.96
157 158 1.537889 AGGTCGGTGACATTGGGGA 60.538 57.895 0.00 0.00 33.68 4.81
158 159 1.078426 GGTCGGTGACATTGGGGAG 60.078 63.158 0.00 0.00 33.68 4.30
159 160 1.745489 GTCGGTGACATTGGGGAGC 60.745 63.158 0.00 0.00 32.09 4.70
160 161 2.819595 CGGTGACATTGGGGAGCG 60.820 66.667 0.00 0.00 0.00 5.03
161 162 3.134127 GGTGACATTGGGGAGCGC 61.134 66.667 0.00 0.00 0.00 5.92
162 163 3.134127 GTGACATTGGGGAGCGCC 61.134 66.667 2.29 0.00 0.00 6.53
163 164 3.645660 TGACATTGGGGAGCGCCA 61.646 61.111 9.31 1.72 35.15 5.69
164 165 2.825836 GACATTGGGGAGCGCCAG 60.826 66.667 9.31 0.00 35.15 4.85
190 191 3.549794 AGGCTCATTACCTCTTCATTGC 58.450 45.455 0.00 0.00 28.76 3.56
191 192 3.201708 AGGCTCATTACCTCTTCATTGCT 59.798 43.478 0.00 0.00 28.76 3.91
192 193 3.563390 GGCTCATTACCTCTTCATTGCTC 59.437 47.826 0.00 0.00 0.00 4.26
193 194 4.450053 GCTCATTACCTCTTCATTGCTCT 58.550 43.478 0.00 0.00 0.00 4.09
194 195 5.453903 GGCTCATTACCTCTTCATTGCTCTA 60.454 44.000 0.00 0.00 0.00 2.43
195 196 5.695816 GCTCATTACCTCTTCATTGCTCTAG 59.304 44.000 0.00 0.00 0.00 2.43
196 197 5.605534 TCATTACCTCTTCATTGCTCTAGC 58.394 41.667 0.00 0.00 42.50 3.42
206 207 2.580867 GCTCTAGCAGCGACACGG 60.581 66.667 0.00 0.00 38.76 4.94
207 208 2.580867 CTCTAGCAGCGACACGGC 60.581 66.667 0.00 0.00 40.15 5.68
208 209 3.342370 CTCTAGCAGCGACACGGCA 62.342 63.158 0.00 0.00 42.62 5.69
209 210 3.181967 CTAGCAGCGACACGGCAC 61.182 66.667 0.00 0.00 42.62 5.01
210 211 4.735132 TAGCAGCGACACGGCACC 62.735 66.667 0.00 0.00 42.62 5.01
217 218 4.101790 GACACGGCACCGGCATTG 62.102 66.667 14.51 4.96 44.69 2.82
218 219 4.634703 ACACGGCACCGGCATTGA 62.635 61.111 14.51 0.00 44.69 2.57
219 220 3.133464 CACGGCACCGGCATTGAT 61.133 61.111 14.51 0.00 44.69 2.57
220 221 3.133464 ACGGCACCGGCATTGATG 61.133 61.111 14.51 0.00 44.69 3.07
221 222 3.133464 CGGCACCGGCATTGATGT 61.133 61.111 0.00 0.00 43.71 3.06
222 223 1.817520 CGGCACCGGCATTGATGTA 60.818 57.895 0.00 0.00 43.71 2.29
223 224 1.165907 CGGCACCGGCATTGATGTAT 61.166 55.000 0.00 0.00 43.71 2.29
224 225 0.593128 GGCACCGGCATTGATGTATC 59.407 55.000 0.00 0.00 43.71 2.24
225 226 0.593128 GCACCGGCATTGATGTATCC 59.407 55.000 0.00 0.00 40.72 2.59
226 227 1.238439 CACCGGCATTGATGTATCCC 58.762 55.000 0.00 0.00 0.00 3.85
227 228 1.140312 ACCGGCATTGATGTATCCCT 58.860 50.000 0.00 0.00 0.00 4.20
228 229 1.494721 ACCGGCATTGATGTATCCCTT 59.505 47.619 0.00 0.00 0.00 3.95
229 230 2.091885 ACCGGCATTGATGTATCCCTTT 60.092 45.455 0.00 0.00 0.00 3.11
230 231 2.294233 CCGGCATTGATGTATCCCTTTG 59.706 50.000 0.00 0.00 0.00 2.77
231 232 2.294233 CGGCATTGATGTATCCCTTTGG 59.706 50.000 0.00 0.00 0.00 3.28
232 233 2.629617 GGCATTGATGTATCCCTTTGGG 59.370 50.000 0.00 0.00 46.11 4.12
233 234 3.299503 GCATTGATGTATCCCTTTGGGT 58.700 45.455 2.25 0.00 44.74 4.51
234 235 3.068590 GCATTGATGTATCCCTTTGGGTG 59.931 47.826 2.25 0.00 44.74 4.61
235 236 2.435372 TGATGTATCCCTTTGGGTGC 57.565 50.000 2.25 0.00 44.74 5.01
236 237 1.064017 TGATGTATCCCTTTGGGTGCC 60.064 52.381 2.25 0.00 44.74 5.01
237 238 0.261696 ATGTATCCCTTTGGGTGCCC 59.738 55.000 0.00 0.00 44.74 5.36
238 239 1.076265 GTATCCCTTTGGGTGCCCC 60.076 63.158 4.59 3.42 44.74 5.80
259 260 2.755469 GGGTGGCCATGCGACAAT 60.755 61.111 9.72 0.00 38.98 2.71
260 261 1.453015 GGGTGGCCATGCGACAATA 60.453 57.895 9.72 0.00 38.98 1.90
261 262 1.447317 GGGTGGCCATGCGACAATAG 61.447 60.000 9.72 0.00 38.98 1.73
262 263 1.356624 GTGGCCATGCGACAATAGC 59.643 57.895 9.72 0.00 37.24 2.97
263 264 1.823470 TGGCCATGCGACAATAGCC 60.823 57.895 0.00 0.00 40.87 3.93
264 265 2.555547 GGCCATGCGACAATAGCCC 61.556 63.158 0.00 0.00 34.23 5.19
265 266 2.896801 GCCATGCGACAATAGCCCG 61.897 63.158 0.00 0.00 0.00 6.13
266 267 1.227527 CCATGCGACAATAGCCCGA 60.228 57.895 0.00 0.00 0.00 5.14
267 268 1.224069 CCATGCGACAATAGCCCGAG 61.224 60.000 0.00 0.00 0.00 4.63
268 269 1.069765 ATGCGACAATAGCCCGAGG 59.930 57.895 0.00 0.00 0.00 4.63
278 279 3.435186 GCCCGAGGCTTTGCAGAC 61.435 66.667 7.58 0.00 46.69 3.51
279 280 3.121030 CCCGAGGCTTTGCAGACG 61.121 66.667 0.00 0.00 30.31 4.18
280 281 3.793144 CCGAGGCTTTGCAGACGC 61.793 66.667 0.00 0.00 39.24 5.19
281 282 3.793144 CGAGGCTTTGCAGACGCC 61.793 66.667 13.28 13.28 44.09 5.68
285 286 4.090057 GCTTTGCAGACGCCGGAC 62.090 66.667 5.05 0.00 37.32 4.79
295 296 2.104331 CGCCGGACGTTAGCTGAT 59.896 61.111 5.05 0.00 36.87 2.90
296 297 2.230940 CGCCGGACGTTAGCTGATG 61.231 63.158 5.05 0.00 36.87 3.07
297 298 2.526120 GCCGGACGTTAGCTGATGC 61.526 63.158 5.05 0.00 40.05 3.91
298 299 1.883084 CCGGACGTTAGCTGATGCC 60.883 63.158 0.00 0.00 40.80 4.40
299 300 1.883084 CGGACGTTAGCTGATGCCC 60.883 63.158 0.00 0.00 40.80 5.36
300 301 1.523938 GGACGTTAGCTGATGCCCC 60.524 63.158 0.00 0.00 40.80 5.80
301 302 1.883084 GACGTTAGCTGATGCCCCG 60.883 63.158 0.00 0.00 40.80 5.73
302 303 3.272334 CGTTAGCTGATGCCCCGC 61.272 66.667 0.00 0.00 40.80 6.13
303 304 2.902343 GTTAGCTGATGCCCCGCC 60.902 66.667 0.00 0.00 40.80 6.13
304 305 4.545706 TTAGCTGATGCCCCGCCG 62.546 66.667 0.00 0.00 40.80 6.46
330 331 3.694746 CAGCGGTAGGTGGTCTGA 58.305 61.111 0.00 0.00 41.81 3.27
331 332 1.513158 CAGCGGTAGGTGGTCTGAG 59.487 63.158 0.00 0.00 41.81 3.35
332 333 1.682684 AGCGGTAGGTGGTCTGAGG 60.683 63.158 0.00 0.00 0.00 3.86
333 334 1.982938 GCGGTAGGTGGTCTGAGGT 60.983 63.158 0.00 0.00 0.00 3.85
334 335 1.890894 CGGTAGGTGGTCTGAGGTG 59.109 63.158 0.00 0.00 0.00 4.00
335 336 1.597461 GGTAGGTGGTCTGAGGTGC 59.403 63.158 0.00 0.00 0.00 5.01
336 337 1.597461 GTAGGTGGTCTGAGGTGCC 59.403 63.158 0.00 0.00 0.00 5.01
337 338 1.982395 TAGGTGGTCTGAGGTGCCG 60.982 63.158 0.00 0.00 0.00 5.69
338 339 4.394712 GGTGGTCTGAGGTGCCGG 62.395 72.222 0.00 0.00 0.00 6.13
339 340 3.311110 GTGGTCTGAGGTGCCGGA 61.311 66.667 5.05 0.00 0.00 5.14
340 341 2.997315 TGGTCTGAGGTGCCGGAG 60.997 66.667 5.05 0.00 0.00 4.63
341 342 4.459089 GGTCTGAGGTGCCGGAGC 62.459 72.222 5.05 0.00 40.48 4.70
351 352 4.101448 GCCGGAGCAGGACACCAT 62.101 66.667 5.05 0.00 39.53 3.55
352 353 2.187946 CCGGAGCAGGACACCATC 59.812 66.667 0.00 0.00 0.00 3.51
353 354 2.362369 CCGGAGCAGGACACCATCT 61.362 63.158 0.00 0.00 0.00 2.90
354 355 1.142748 CGGAGCAGGACACCATCTC 59.857 63.158 0.00 0.00 0.00 2.75
355 356 1.326213 CGGAGCAGGACACCATCTCT 61.326 60.000 0.00 0.00 0.00 3.10
356 357 1.781786 GGAGCAGGACACCATCTCTA 58.218 55.000 0.00 0.00 0.00 2.43
357 358 1.686052 GGAGCAGGACACCATCTCTAG 59.314 57.143 0.00 0.00 0.00 2.43
358 359 1.068434 GAGCAGGACACCATCTCTAGC 59.932 57.143 0.00 0.00 0.00 3.42
359 360 0.249238 GCAGGACACCATCTCTAGCG 60.249 60.000 0.00 0.00 0.00 4.26
360 361 1.107114 CAGGACACCATCTCTAGCGT 58.893 55.000 0.00 0.00 0.00 5.07
361 362 1.066303 CAGGACACCATCTCTAGCGTC 59.934 57.143 0.00 0.00 0.00 5.19
362 363 0.029567 GGACACCATCTCTAGCGTCG 59.970 60.000 0.00 0.00 0.00 5.12
363 364 0.029567 GACACCATCTCTAGCGTCGG 59.970 60.000 0.00 0.00 0.00 4.79
364 365 1.360551 CACCATCTCTAGCGTCGGG 59.639 63.158 0.00 0.00 0.00 5.14
365 366 1.828660 ACCATCTCTAGCGTCGGGG 60.829 63.158 0.00 0.00 0.00 5.73
366 367 2.336809 CATCTCTAGCGTCGGGGC 59.663 66.667 0.00 0.00 0.00 5.80
367 368 2.196229 ATCTCTAGCGTCGGGGCT 59.804 61.111 6.39 6.39 46.88 5.19
368 369 2.196925 ATCTCTAGCGTCGGGGCTG 61.197 63.158 10.76 2.66 44.50 4.85
369 370 2.626255 ATCTCTAGCGTCGGGGCTGA 62.626 60.000 10.76 6.15 44.50 4.26
370 371 2.829003 TCTAGCGTCGGGGCTGAG 60.829 66.667 10.76 5.49 44.50 3.35
371 372 2.829003 CTAGCGTCGGGGCTGAGA 60.829 66.667 10.76 0.00 44.50 3.27
372 373 3.127352 CTAGCGTCGGGGCTGAGAC 62.127 68.421 10.76 0.00 44.50 3.36
381 382 4.459089 GGCTGAGACCCTCGTGGC 62.459 72.222 0.00 0.00 37.83 5.01
382 383 4.459089 GCTGAGACCCTCGTGGCC 62.459 72.222 0.00 0.00 37.83 5.36
383 384 4.135153 CTGAGACCCTCGTGGCCG 62.135 72.222 0.00 0.00 37.83 6.13
409 410 1.338020 CCGGGAAGGAAAATATGCAGC 59.662 52.381 0.00 0.00 45.00 5.25
410 411 2.301346 CGGGAAGGAAAATATGCAGCT 58.699 47.619 0.00 0.00 0.00 4.24
411 412 2.291741 CGGGAAGGAAAATATGCAGCTC 59.708 50.000 0.00 0.00 0.00 4.09
412 413 2.291741 GGGAAGGAAAATATGCAGCTCG 59.708 50.000 0.00 0.00 0.00 5.03
413 414 2.287248 GGAAGGAAAATATGCAGCTCGC 60.287 50.000 0.00 1.70 42.89 5.03
414 415 0.940126 AGGAAAATATGCAGCTCGCG 59.060 50.000 0.00 0.00 46.97 5.87
415 416 0.040958 GGAAAATATGCAGCTCGCGG 60.041 55.000 6.13 0.00 46.97 6.46
416 417 0.937304 GAAAATATGCAGCTCGCGGA 59.063 50.000 6.13 0.00 46.97 5.54
417 418 0.940126 AAAATATGCAGCTCGCGGAG 59.060 50.000 6.13 3.47 46.97 4.63
418 419 0.882042 AAATATGCAGCTCGCGGAGG 60.882 55.000 6.13 0.00 46.97 4.30
419 420 3.873026 ATATGCAGCTCGCGGAGGC 62.873 63.158 6.13 8.97 46.97 4.70
441 442 4.986587 CGCGTTCACGTCCACCGA 62.987 66.667 0.00 0.00 42.22 4.69
442 443 3.400590 GCGTTCACGTCCACCGAC 61.401 66.667 0.62 0.00 42.22 4.79
443 444 2.026445 CGTTCACGTCCACCGACA 59.974 61.111 0.00 0.00 39.11 4.35
444 445 1.589461 CGTTCACGTCCACCGACAA 60.589 57.895 0.00 0.00 39.11 3.18
445 446 1.814211 CGTTCACGTCCACCGACAAC 61.814 60.000 0.00 0.00 39.11 3.32
446 447 0.806884 GTTCACGTCCACCGACAACA 60.807 55.000 0.00 0.00 39.11 3.33
447 448 0.105224 TTCACGTCCACCGACAACAT 59.895 50.000 0.00 0.00 39.11 2.71
448 449 0.598942 TCACGTCCACCGACAACATG 60.599 55.000 0.00 0.00 39.11 3.21
449 450 0.878523 CACGTCCACCGACAACATGT 60.879 55.000 0.00 0.00 39.11 3.21
450 451 0.179067 ACGTCCACCGACAACATGTT 60.179 50.000 4.92 4.92 39.11 2.71
451 452 0.511221 CGTCCACCGACAACATGTTC 59.489 55.000 8.48 0.00 39.11 3.18
452 453 0.511221 GTCCACCGACAACATGTTCG 59.489 55.000 8.48 10.60 38.99 3.95
453 454 0.601576 TCCACCGACAACATGTTCGG 60.602 55.000 28.99 28.99 42.50 4.30
454 455 1.573829 CCACCGACAACATGTTCGGG 61.574 60.000 31.96 23.48 41.74 5.14
455 456 0.601576 CACCGACAACATGTTCGGGA 60.602 55.000 31.96 0.00 41.74 5.14
456 457 0.320421 ACCGACAACATGTTCGGGAG 60.320 55.000 31.96 15.39 41.74 4.30
457 458 1.019278 CCGACAACATGTTCGGGAGG 61.019 60.000 25.05 13.61 37.39 4.30
458 459 1.635663 CGACAACATGTTCGGGAGGC 61.636 60.000 8.48 0.00 0.00 4.70
459 460 0.321653 GACAACATGTTCGGGAGGCT 60.322 55.000 8.48 0.00 0.00 4.58
460 461 0.606401 ACAACATGTTCGGGAGGCTG 60.606 55.000 8.48 0.00 0.00 4.85
461 462 0.606401 CAACATGTTCGGGAGGCTGT 60.606 55.000 8.48 0.00 0.00 4.40
462 463 0.321653 AACATGTTCGGGAGGCTGTC 60.322 55.000 4.92 0.00 0.00 3.51
463 464 1.450312 CATGTTCGGGAGGCTGTCC 60.450 63.158 0.00 0.00 46.10 4.02
484 485 3.503749 CGGAGGTCCTCGAGAGTG 58.496 66.667 15.71 0.00 0.00 3.51
485 486 2.766400 CGGAGGTCCTCGAGAGTGC 61.766 68.421 15.71 0.39 0.00 4.40
486 487 2.419739 GGAGGTCCTCGAGAGTGCC 61.420 68.421 15.71 9.98 0.00 5.01
487 488 2.752238 AGGTCCTCGAGAGTGCCG 60.752 66.667 15.71 0.00 0.00 5.69
488 489 3.827898 GGTCCTCGAGAGTGCCGG 61.828 72.222 15.71 0.00 0.00 6.13
489 490 4.500116 GTCCTCGAGAGTGCCGGC 62.500 72.222 22.73 22.73 0.00 6.13
523 524 3.585990 GTGGCAATCCCCGCGATG 61.586 66.667 8.23 0.00 0.00 3.84
524 525 4.108299 TGGCAATCCCCGCGATGT 62.108 61.111 8.23 0.00 0.00 3.06
525 526 2.110213 GGCAATCCCCGCGATGTA 59.890 61.111 8.23 0.00 0.00 2.29
526 527 2.251642 GGCAATCCCCGCGATGTAC 61.252 63.158 8.23 0.00 0.00 2.90
527 528 1.227556 GCAATCCCCGCGATGTACT 60.228 57.895 8.23 0.00 0.00 2.73
528 529 1.222115 GCAATCCCCGCGATGTACTC 61.222 60.000 8.23 0.00 0.00 2.59
529 530 0.600255 CAATCCCCGCGATGTACTCC 60.600 60.000 8.23 0.00 0.00 3.85
530 531 1.046472 AATCCCCGCGATGTACTCCA 61.046 55.000 8.23 0.00 0.00 3.86
531 532 1.464376 ATCCCCGCGATGTACTCCAG 61.464 60.000 8.23 0.00 0.00 3.86
532 533 2.279517 CCCGCGATGTACTCCAGC 60.280 66.667 8.23 0.00 0.00 4.85
533 534 2.786495 CCCGCGATGTACTCCAGCT 61.786 63.158 8.23 0.00 0.00 4.24
534 535 1.589993 CCGCGATGTACTCCAGCTG 60.590 63.158 8.23 6.78 0.00 4.24
535 536 1.589993 CGCGATGTACTCCAGCTGG 60.590 63.158 27.87 27.87 0.00 4.85
536 537 1.816537 GCGATGTACTCCAGCTGGA 59.183 57.895 33.04 33.04 43.08 3.86
568 569 4.106925 GGGCAGCAGGTGGAGGAG 62.107 72.222 0.86 0.00 0.00 3.69
569 570 3.005539 GGCAGCAGGTGGAGGAGA 61.006 66.667 0.86 0.00 0.00 3.71
570 571 2.583520 GCAGCAGGTGGAGGAGAG 59.416 66.667 0.86 0.00 0.00 3.20
571 572 2.583520 CAGCAGGTGGAGGAGAGC 59.416 66.667 0.00 0.00 0.00 4.09
572 573 2.121385 AGCAGGTGGAGGAGAGCA 59.879 61.111 0.00 0.00 0.00 4.26
573 574 1.306825 AGCAGGTGGAGGAGAGCAT 60.307 57.895 0.00 0.00 0.00 3.79
574 575 1.153208 GCAGGTGGAGGAGAGCATG 60.153 63.158 0.00 0.00 0.00 4.06
575 576 1.153208 CAGGTGGAGGAGAGCATGC 60.153 63.158 10.51 10.51 0.00 4.06
576 577 2.202987 GGTGGAGGAGAGCATGCG 60.203 66.667 13.01 0.00 0.00 4.73
577 578 2.202987 GTGGAGGAGAGCATGCGG 60.203 66.667 13.01 0.00 0.00 5.69
578 579 4.166888 TGGAGGAGAGCATGCGGC 62.167 66.667 13.01 8.84 45.30 6.53
579 580 4.925861 GGAGGAGAGCATGCGGCC 62.926 72.222 13.01 14.69 46.50 6.13
588 589 3.803082 CATGCGGCCGAGGTTGTG 61.803 66.667 33.48 13.13 0.00 3.33
593 594 4.681978 GGCCGAGGTTGTGCTCGT 62.682 66.667 0.00 0.00 41.01 4.18
594 595 3.112709 GCCGAGGTTGTGCTCGTC 61.113 66.667 0.00 0.00 41.01 4.20
595 596 2.432628 CCGAGGTTGTGCTCGTCC 60.433 66.667 0.00 0.00 41.01 4.79
596 597 2.805353 CGAGGTTGTGCTCGTCCG 60.805 66.667 0.00 0.00 38.18 4.79
597 598 3.112709 GAGGTTGTGCTCGTCCGC 61.113 66.667 0.00 0.00 0.00 5.54
616 617 4.891727 CCGCCGGGTTCGATCCTG 62.892 72.222 13.60 13.60 39.00 3.86
619 620 3.470888 CCGGGTTCGATCCTGGCT 61.471 66.667 24.28 0.00 45.60 4.75
620 621 2.131709 CCGGGTTCGATCCTGGCTA 61.132 63.158 24.28 0.00 45.60 3.93
621 622 1.067582 CGGGTTCGATCCTGGCTAC 59.932 63.158 12.84 0.00 39.00 3.58
622 623 1.446366 GGGTTCGATCCTGGCTACC 59.554 63.158 12.19 1.28 0.00 3.18
623 624 1.446366 GGTTCGATCCTGGCTACCC 59.554 63.158 5.21 0.00 0.00 3.69
624 625 1.049289 GGTTCGATCCTGGCTACCCT 61.049 60.000 5.21 0.00 0.00 4.34
625 626 0.105039 GTTCGATCCTGGCTACCCTG 59.895 60.000 0.00 0.00 0.00 4.45
626 627 0.032515 TTCGATCCTGGCTACCCTGA 60.033 55.000 0.00 0.00 32.15 3.86
627 628 0.468214 TCGATCCTGGCTACCCTGAG 60.468 60.000 0.00 0.00 32.15 3.35
628 629 1.751563 GATCCTGGCTACCCTGAGC 59.248 63.158 0.00 0.00 42.05 4.26
629 630 1.003442 ATCCTGGCTACCCTGAGCA 59.997 57.895 0.00 0.00 44.76 4.26
630 631 1.341156 ATCCTGGCTACCCTGAGCAC 61.341 60.000 0.00 0.00 44.76 4.40
631 632 2.185350 CTGGCTACCCTGAGCACG 59.815 66.667 0.00 0.00 44.76 5.34
632 633 2.283604 TGGCTACCCTGAGCACGA 60.284 61.111 0.00 0.00 44.76 4.35
633 634 2.290122 CTGGCTACCCTGAGCACGAG 62.290 65.000 0.00 0.00 44.76 4.18
634 635 2.496817 GCTACCCTGAGCACGAGG 59.503 66.667 0.00 0.00 42.36 4.63
635 636 2.352032 GCTACCCTGAGCACGAGGT 61.352 63.158 0.00 0.83 42.36 3.85
636 637 1.889530 GCTACCCTGAGCACGAGGTT 61.890 60.000 0.41 0.00 42.36 3.50
637 638 0.108615 CTACCCTGAGCACGAGGTTG 60.109 60.000 0.41 0.00 33.70 3.77
638 639 1.541310 TACCCTGAGCACGAGGTTGG 61.541 60.000 0.41 0.00 33.70 3.77
639 640 2.743718 CCTGAGCACGAGGTTGGT 59.256 61.111 0.00 0.00 0.00 3.67
640 641 1.669115 CCTGAGCACGAGGTTGGTG 60.669 63.158 0.00 0.00 38.42 4.17
641 642 1.367471 CTGAGCACGAGGTTGGTGA 59.633 57.895 0.00 0.00 37.60 4.02
642 643 0.668706 CTGAGCACGAGGTTGGTGAG 60.669 60.000 0.00 0.00 37.60 3.51
643 644 2.029844 GAGCACGAGGTTGGTGAGC 61.030 63.158 0.00 0.00 37.60 4.26
644 645 3.414700 GCACGAGGTTGGTGAGCG 61.415 66.667 0.00 0.00 37.60 5.03
645 646 3.414700 CACGAGGTTGGTGAGCGC 61.415 66.667 0.00 0.00 37.60 5.92
648 649 3.414700 GAGGTTGGTGAGCGCGTG 61.415 66.667 8.43 0.00 0.00 5.34
649 650 4.988598 AGGTTGGTGAGCGCGTGG 62.989 66.667 8.43 0.00 0.00 4.94
650 651 4.980805 GGTTGGTGAGCGCGTGGA 62.981 66.667 8.43 0.00 0.00 4.02
651 652 2.970324 GTTGGTGAGCGCGTGGAA 60.970 61.111 8.43 0.00 0.00 3.53
652 653 2.664851 TTGGTGAGCGCGTGGAAG 60.665 61.111 8.43 0.00 0.00 3.46
653 654 4.680237 TGGTGAGCGCGTGGAAGG 62.680 66.667 8.43 0.00 0.00 3.46
687 688 4.717313 GGGGACGTTGAGGGTGGC 62.717 72.222 0.00 0.00 0.00 5.01
689 690 4.309950 GGACGTTGAGGGTGGCGT 62.310 66.667 0.00 0.00 40.44 5.68
690 691 2.280592 GACGTTGAGGGTGGCGTT 60.281 61.111 0.00 0.00 37.71 4.84
691 692 2.590575 ACGTTGAGGGTGGCGTTG 60.591 61.111 0.00 0.00 33.54 4.10
692 693 4.025401 CGTTGAGGGTGGCGTTGC 62.025 66.667 0.00 0.00 0.00 4.17
709 710 4.201122 CCCAGGGCCAGGCTCATC 62.201 72.222 15.81 0.00 0.00 2.92
710 711 4.559063 CCAGGGCCAGGCTCATCG 62.559 72.222 15.81 0.55 0.00 3.84
711 712 3.790437 CAGGGCCAGGCTCATCGT 61.790 66.667 15.81 0.00 0.00 3.73
712 713 3.474570 AGGGCCAGGCTCATCGTC 61.475 66.667 15.81 0.00 0.00 4.20
713 714 4.899239 GGGCCAGGCTCATCGTCG 62.899 72.222 12.43 0.00 0.00 5.12
714 715 4.148825 GGCCAGGCTCATCGTCGT 62.149 66.667 12.43 0.00 0.00 4.34
1265 1371 2.812358 TGTCTTTGTGCGAGCTTCTA 57.188 45.000 0.00 0.00 0.00 2.10
1365 1588 1.908619 TGGCATCTGAGAGGCTTGTTA 59.091 47.619 19.01 0.00 39.44 2.41
1642 2044 7.822822 GCTCCTCTTGTTAAATTTAGTGGTCTA 59.177 37.037 0.00 0.00 0.00 2.59
2084 2487 5.124457 GCAACTGAGATGGCAAAGAAAGATA 59.876 40.000 0.00 0.00 0.00 1.98
2379 2782 5.505780 TGAAAGGTTGAAGGAGAAGTTCAA 58.494 37.500 5.50 0.00 40.73 2.69
3084 3491 2.111384 AGCCTCCATACTTCATCACGT 58.889 47.619 0.00 0.00 0.00 4.49
3155 3562 0.467844 TGCACAAATCCACAGCCACT 60.468 50.000 0.00 0.00 0.00 4.00
3351 3759 2.358615 GCAGTGGCACATCACCGA 60.359 61.111 21.41 0.00 44.52 4.69
3375 3783 2.643551 CTCGTATGCCATTGGGTTCTT 58.356 47.619 4.53 0.00 36.17 2.52
3435 3843 0.459237 CCTGCAGCTCGACGAAATCT 60.459 55.000 8.66 0.00 0.00 2.40
3475 3883 2.885861 GACCACGACATCTCCGCT 59.114 61.111 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.095668 CAGCAACGTTCGACTACTCTCT 60.096 50.000 0.00 0.00 0.00 3.10
60 61 2.050168 CGCCAATGCAGCAACGTT 60.050 55.556 0.00 0.00 37.32 3.99
72 73 2.361104 GCCAGGTTCATCCGCCAA 60.361 61.111 0.00 0.00 41.99 4.52
73 74 4.776322 CGCCAGGTTCATCCGCCA 62.776 66.667 0.00 0.00 41.99 5.69
74 75 4.467084 TCGCCAGGTTCATCCGCC 62.467 66.667 0.00 0.00 41.99 6.13
75 76 3.195698 GTCGCCAGGTTCATCCGC 61.196 66.667 0.00 0.00 41.99 5.54
76 77 2.885644 CGTCGCCAGGTTCATCCG 60.886 66.667 0.00 0.00 41.99 4.18
77 78 3.195698 GCGTCGCCAGGTTCATCC 61.196 66.667 5.75 0.00 0.00 3.51
78 79 2.125512 AGCGTCGCCAGGTTCATC 60.126 61.111 14.86 0.00 0.00 2.92
79 80 2.434884 CAGCGTCGCCAGGTTCAT 60.435 61.111 14.86 0.00 0.00 2.57
80 81 4.680237 CCAGCGTCGCCAGGTTCA 62.680 66.667 14.86 0.00 0.00 3.18
100 101 2.361610 ATCAGGCCACCGCTTTGG 60.362 61.111 5.01 0.00 46.41 3.28
101 102 1.675310 TCATCAGGCCACCGCTTTG 60.675 57.895 5.01 0.00 34.44 2.77
102 103 1.675641 GTCATCAGGCCACCGCTTT 60.676 57.895 5.01 0.00 34.44 3.51
103 104 2.045926 GTCATCAGGCCACCGCTT 60.046 61.111 5.01 0.00 34.44 4.68
104 105 2.673200 ATGTCATCAGGCCACCGCT 61.673 57.895 5.01 0.00 34.44 5.52
105 106 2.124570 ATGTCATCAGGCCACCGC 60.125 61.111 5.01 0.00 0.00 5.68
106 107 1.820906 CCATGTCATCAGGCCACCG 60.821 63.158 5.01 0.00 0.00 4.94
107 108 0.184451 ATCCATGTCATCAGGCCACC 59.816 55.000 5.01 0.00 0.00 4.61
108 109 2.936919 TATCCATGTCATCAGGCCAC 57.063 50.000 5.01 0.00 0.00 5.01
109 110 4.105217 AGAAATATCCATGTCATCAGGCCA 59.895 41.667 5.01 0.00 0.00 5.36
110 111 4.660168 AGAAATATCCATGTCATCAGGCC 58.340 43.478 0.00 0.00 0.00 5.19
111 112 7.337167 AGATAGAAATATCCATGTCATCAGGC 58.663 38.462 0.00 0.00 0.00 4.85
112 113 7.986320 GGAGATAGAAATATCCATGTCATCAGG 59.014 40.741 0.00 0.00 42.19 3.86
113 114 8.537858 TGGAGATAGAAATATCCATGTCATCAG 58.462 37.037 0.00 0.00 46.27 2.90
114 115 8.439964 TGGAGATAGAAATATCCATGTCATCA 57.560 34.615 0.00 0.00 46.27 3.07
123 124 4.773149 ACCGACCTGGAGATAGAAATATCC 59.227 45.833 0.00 0.00 42.82 2.59
124 125 5.477291 TCACCGACCTGGAGATAGAAATATC 59.523 44.000 0.00 0.00 42.00 1.63
125 126 5.244178 GTCACCGACCTGGAGATAGAAATAT 59.756 44.000 0.00 0.00 39.67 1.28
126 127 4.583489 GTCACCGACCTGGAGATAGAAATA 59.417 45.833 0.00 0.00 39.67 1.40
127 128 3.385111 GTCACCGACCTGGAGATAGAAAT 59.615 47.826 0.00 0.00 39.67 2.17
128 129 2.758979 GTCACCGACCTGGAGATAGAAA 59.241 50.000 0.00 0.00 39.67 2.52
129 130 2.291346 TGTCACCGACCTGGAGATAGAA 60.291 50.000 0.00 0.00 39.67 2.10
130 131 1.283905 TGTCACCGACCTGGAGATAGA 59.716 52.381 0.00 0.00 39.67 1.98
131 132 1.763968 TGTCACCGACCTGGAGATAG 58.236 55.000 0.00 0.00 39.67 2.08
132 133 2.430694 CAATGTCACCGACCTGGAGATA 59.569 50.000 0.00 0.00 39.67 1.98
133 134 1.208052 CAATGTCACCGACCTGGAGAT 59.792 52.381 0.00 0.00 39.67 2.75
134 135 0.608130 CAATGTCACCGACCTGGAGA 59.392 55.000 0.00 0.00 42.00 3.71
135 136 0.391661 CCAATGTCACCGACCTGGAG 60.392 60.000 0.00 0.00 42.00 3.86
136 137 1.676968 CCAATGTCACCGACCTGGA 59.323 57.895 0.00 0.00 42.00 3.86
137 138 1.377202 CCCAATGTCACCGACCTGG 60.377 63.158 0.00 0.00 46.41 4.45
138 139 1.377202 CCCCAATGTCACCGACCTG 60.377 63.158 0.00 0.00 0.00 4.00
139 140 1.537889 TCCCCAATGTCACCGACCT 60.538 57.895 0.00 0.00 0.00 3.85
140 141 1.078426 CTCCCCAATGTCACCGACC 60.078 63.158 0.00 0.00 0.00 4.79
141 142 1.745489 GCTCCCCAATGTCACCGAC 60.745 63.158 0.00 0.00 0.00 4.79
142 143 2.668632 GCTCCCCAATGTCACCGA 59.331 61.111 0.00 0.00 0.00 4.69
143 144 2.819595 CGCTCCCCAATGTCACCG 60.820 66.667 0.00 0.00 0.00 4.94
144 145 3.134127 GCGCTCCCCAATGTCACC 61.134 66.667 0.00 0.00 0.00 4.02
145 146 3.134127 GGCGCTCCCCAATGTCAC 61.134 66.667 7.64 0.00 0.00 3.67
146 147 3.626996 CTGGCGCTCCCCAATGTCA 62.627 63.158 7.64 0.00 33.73 3.58
147 148 2.825836 CTGGCGCTCCCCAATGTC 60.826 66.667 7.64 0.00 33.73 3.06
164 165 2.979130 GAGGTAATGAGCCTCGTGC 58.021 57.895 0.00 0.00 42.46 5.34
169 170 3.201708 AGCAATGAAGAGGTAATGAGCCT 59.798 43.478 0.00 0.00 39.42 4.58
170 171 3.549794 AGCAATGAAGAGGTAATGAGCC 58.450 45.455 0.00 0.00 0.00 4.70
171 172 4.450053 AGAGCAATGAAGAGGTAATGAGC 58.550 43.478 0.00 0.00 0.00 4.26
172 173 5.695816 GCTAGAGCAATGAAGAGGTAATGAG 59.304 44.000 0.00 0.00 41.59 2.90
173 174 5.605534 GCTAGAGCAATGAAGAGGTAATGA 58.394 41.667 0.00 0.00 41.59 2.57
174 175 5.921004 GCTAGAGCAATGAAGAGGTAATG 57.079 43.478 0.00 0.00 41.59 1.90
189 190 2.580867 CCGTGTCGCTGCTAGAGC 60.581 66.667 0.00 0.00 45.20 4.09
190 191 2.580867 GCCGTGTCGCTGCTAGAG 60.581 66.667 0.00 0.00 0.00 2.43
191 192 3.370231 TGCCGTGTCGCTGCTAGA 61.370 61.111 0.00 0.00 0.00 2.43
192 193 3.181967 GTGCCGTGTCGCTGCTAG 61.182 66.667 0.00 0.00 0.00 3.42
193 194 4.735132 GGTGCCGTGTCGCTGCTA 62.735 66.667 0.00 0.00 0.00 3.49
200 201 4.101790 CAATGCCGGTGCCGTGTC 62.102 66.667 1.90 0.00 37.81 3.67
201 202 3.918253 ATCAATGCCGGTGCCGTGT 62.918 57.895 1.90 0.00 37.81 4.49
202 203 3.133464 ATCAATGCCGGTGCCGTG 61.133 61.111 1.90 1.49 37.81 4.94
203 204 2.529454 TACATCAATGCCGGTGCCGT 62.529 55.000 1.90 0.00 37.81 5.68
204 205 1.165907 ATACATCAATGCCGGTGCCG 61.166 55.000 1.90 3.25 36.33 5.69
205 206 0.593128 GATACATCAATGCCGGTGCC 59.407 55.000 1.90 0.00 36.33 5.01
206 207 0.593128 GGATACATCAATGCCGGTGC 59.407 55.000 1.90 0.00 38.26 5.01
207 208 1.202806 AGGGATACATCAATGCCGGTG 60.203 52.381 1.90 0.00 41.92 4.94
208 209 1.140312 AGGGATACATCAATGCCGGT 58.860 50.000 1.90 0.00 41.92 5.28
209 210 2.276732 AAGGGATACATCAATGCCGG 57.723 50.000 0.00 0.00 41.92 6.13
210 211 2.294233 CCAAAGGGATACATCAATGCCG 59.706 50.000 0.00 0.00 41.92 5.69
242 243 1.447317 CTATTGTCGCATGGCCACCC 61.447 60.000 8.16 0.00 0.00 4.61
243 244 2.024918 CTATTGTCGCATGGCCACC 58.975 57.895 8.16 0.10 0.00 4.61
244 245 1.356624 GCTATTGTCGCATGGCCAC 59.643 57.895 8.16 0.00 0.00 5.01
245 246 1.823470 GGCTATTGTCGCATGGCCA 60.823 57.895 8.56 8.56 39.38 5.36
246 247 2.555547 GGGCTATTGTCGCATGGCC 61.556 63.158 0.00 0.00 38.92 5.36
247 248 2.896801 CGGGCTATTGTCGCATGGC 61.897 63.158 0.00 0.00 0.00 4.40
248 249 1.224069 CTCGGGCTATTGTCGCATGG 61.224 60.000 0.00 0.00 0.00 3.66
249 250 1.224069 CCTCGGGCTATTGTCGCATG 61.224 60.000 0.00 0.00 0.00 4.06
250 251 1.069765 CCTCGGGCTATTGTCGCAT 59.930 57.895 0.00 0.00 0.00 4.73
251 252 2.499205 CCTCGGGCTATTGTCGCA 59.501 61.111 0.00 0.00 0.00 5.10
252 253 2.967615 GCCTCGGGCTATTGTCGC 60.968 66.667 7.58 0.00 46.69 5.19
262 263 3.121030 CGTCTGCAAAGCCTCGGG 61.121 66.667 0.00 0.00 0.00 5.14
263 264 3.793144 GCGTCTGCAAAGCCTCGG 61.793 66.667 0.00 0.00 42.15 4.63
268 269 4.090057 GTCCGGCGTCTGCAAAGC 62.090 66.667 6.01 0.00 45.35 3.51
269 270 3.777925 CGTCCGGCGTCTGCAAAG 61.778 66.667 6.01 0.00 45.35 2.77
279 280 2.526120 GCATCAGCTAACGTCCGGC 61.526 63.158 0.00 0.00 37.91 6.13
280 281 1.883084 GGCATCAGCTAACGTCCGG 60.883 63.158 0.00 0.00 41.70 5.14
281 282 1.883084 GGGCATCAGCTAACGTCCG 60.883 63.158 0.00 0.00 41.70 4.79
282 283 1.523938 GGGGCATCAGCTAACGTCC 60.524 63.158 0.00 0.00 41.70 4.79
283 284 1.883084 CGGGGCATCAGCTAACGTC 60.883 63.158 0.00 0.00 41.70 4.34
284 285 2.186903 CGGGGCATCAGCTAACGT 59.813 61.111 0.00 0.00 41.70 3.99
285 286 3.272334 GCGGGGCATCAGCTAACG 61.272 66.667 0.00 0.00 41.70 3.18
286 287 2.902343 GGCGGGGCATCAGCTAAC 60.902 66.667 0.00 0.00 41.70 2.34
287 288 4.545706 CGGCGGGGCATCAGCTAA 62.546 66.667 0.00 0.00 41.70 3.09
304 305 4.577246 CTACCGCTGGAGCTCGCC 62.577 72.222 7.83 0.00 39.32 5.54
305 306 4.577246 CCTACCGCTGGAGCTCGC 62.577 72.222 7.83 5.53 39.32 5.03
306 307 3.141488 ACCTACCGCTGGAGCTCG 61.141 66.667 7.83 0.00 39.32 5.03
307 308 2.496817 CACCTACCGCTGGAGCTC 59.503 66.667 4.71 4.71 39.32 4.09
308 309 3.077556 CCACCTACCGCTGGAGCT 61.078 66.667 1.50 0.00 39.32 4.09
309 310 3.372554 GACCACCTACCGCTGGAGC 62.373 68.421 1.50 0.00 37.78 4.70
310 311 1.682684 AGACCACCTACCGCTGGAG 60.683 63.158 1.50 0.00 0.00 3.86
311 312 1.982395 CAGACCACCTACCGCTGGA 60.982 63.158 1.50 0.00 0.00 3.86
312 313 1.949847 CTCAGACCACCTACCGCTGG 61.950 65.000 0.00 0.00 0.00 4.85
313 314 1.513158 CTCAGACCACCTACCGCTG 59.487 63.158 0.00 0.00 0.00 5.18
314 315 1.682684 CCTCAGACCACCTACCGCT 60.683 63.158 0.00 0.00 0.00 5.52
315 316 1.982938 ACCTCAGACCACCTACCGC 60.983 63.158 0.00 0.00 0.00 5.68
316 317 1.890894 CACCTCAGACCACCTACCG 59.109 63.158 0.00 0.00 0.00 4.02
317 318 1.597461 GCACCTCAGACCACCTACC 59.403 63.158 0.00 0.00 0.00 3.18
318 319 1.597461 GGCACCTCAGACCACCTAC 59.403 63.158 0.00 0.00 0.00 3.18
319 320 1.982395 CGGCACCTCAGACCACCTA 60.982 63.158 0.00 0.00 0.00 3.08
320 321 3.314331 CGGCACCTCAGACCACCT 61.314 66.667 0.00 0.00 0.00 4.00
321 322 4.394712 CCGGCACCTCAGACCACC 62.395 72.222 0.00 0.00 0.00 4.61
322 323 3.302347 CTCCGGCACCTCAGACCAC 62.302 68.421 0.00 0.00 0.00 4.16
323 324 2.997315 CTCCGGCACCTCAGACCA 60.997 66.667 0.00 0.00 0.00 4.02
324 325 4.459089 GCTCCGGCACCTCAGACC 62.459 72.222 0.00 0.00 38.54 3.85
325 326 3.655810 CTGCTCCGGCACCTCAGAC 62.656 68.421 0.00 0.00 44.28 3.51
326 327 3.385384 CTGCTCCGGCACCTCAGA 61.385 66.667 0.00 0.00 44.28 3.27
327 328 4.463879 CCTGCTCCGGCACCTCAG 62.464 72.222 0.00 0.00 44.28 3.35
329 330 4.459089 GTCCTGCTCCGGCACCTC 62.459 72.222 0.00 0.00 44.28 3.85
334 335 4.101448 ATGGTGTCCTGCTCCGGC 62.101 66.667 0.00 0.00 39.26 6.13
335 336 2.187946 GATGGTGTCCTGCTCCGG 59.812 66.667 0.00 0.00 33.61 5.14
336 337 1.142748 GAGATGGTGTCCTGCTCCG 59.857 63.158 0.00 0.00 33.61 4.63
337 338 1.686052 CTAGAGATGGTGTCCTGCTCC 59.314 57.143 0.00 0.00 0.00 4.70
338 339 1.068434 GCTAGAGATGGTGTCCTGCTC 59.932 57.143 0.00 0.00 0.00 4.26
339 340 1.118838 GCTAGAGATGGTGTCCTGCT 58.881 55.000 0.00 0.00 0.00 4.24
340 341 0.249238 CGCTAGAGATGGTGTCCTGC 60.249 60.000 0.00 0.00 0.00 4.85
341 342 1.066303 GACGCTAGAGATGGTGTCCTG 59.934 57.143 0.00 0.00 37.10 3.86
342 343 1.394618 GACGCTAGAGATGGTGTCCT 58.605 55.000 0.00 0.00 37.10 3.85
343 344 0.029567 CGACGCTAGAGATGGTGTCC 59.970 60.000 0.00 0.00 39.07 4.02
344 345 0.029567 CCGACGCTAGAGATGGTGTC 59.970 60.000 0.00 0.00 38.94 3.67
345 346 1.384989 CCCGACGCTAGAGATGGTGT 61.385 60.000 0.00 0.00 0.00 4.16
346 347 1.360551 CCCGACGCTAGAGATGGTG 59.639 63.158 0.00 0.00 0.00 4.17
347 348 1.828660 CCCCGACGCTAGAGATGGT 60.829 63.158 0.00 0.00 0.00 3.55
348 349 3.043419 CCCCGACGCTAGAGATGG 58.957 66.667 0.00 1.10 0.00 3.51
349 350 2.196925 AGCCCCGACGCTAGAGATG 61.197 63.158 0.00 0.00 37.32 2.90
350 351 2.196229 AGCCCCGACGCTAGAGAT 59.804 61.111 0.00 0.00 37.32 2.75
351 352 2.829003 CAGCCCCGACGCTAGAGA 60.829 66.667 0.00 0.00 36.82 3.10
352 353 2.829003 TCAGCCCCGACGCTAGAG 60.829 66.667 0.00 0.00 36.82 2.43
353 354 2.829003 CTCAGCCCCGACGCTAGA 60.829 66.667 0.00 0.00 36.82 2.43
354 355 2.829003 TCTCAGCCCCGACGCTAG 60.829 66.667 0.00 0.00 36.82 3.42
355 356 3.138798 GTCTCAGCCCCGACGCTA 61.139 66.667 0.00 0.00 36.82 4.26
364 365 4.459089 GCCACGAGGGTCTCAGCC 62.459 72.222 0.00 0.00 39.65 4.85
365 366 4.459089 GGCCACGAGGGTCTCAGC 62.459 72.222 0.00 0.00 38.65 4.26
366 367 4.135153 CGGCCACGAGGGTCTCAG 62.135 72.222 2.24 0.00 44.60 3.35
383 384 3.787795 TATTTTCCTTCCCGGAGCCGC 62.788 57.143 0.73 0.00 44.28 6.53
384 385 0.179468 TATTTTCCTTCCCGGAGCCG 59.821 55.000 0.73 1.06 44.28 5.52
385 386 2.230660 CATATTTTCCTTCCCGGAGCC 58.769 52.381 0.73 0.00 44.28 4.70
386 387 1.609072 GCATATTTTCCTTCCCGGAGC 59.391 52.381 0.73 0.00 44.28 4.70
387 388 2.880890 CTGCATATTTTCCTTCCCGGAG 59.119 50.000 0.73 0.00 44.28 4.63
388 389 2.930950 CTGCATATTTTCCTTCCCGGA 58.069 47.619 0.73 0.00 41.06 5.14
389 390 1.338020 GCTGCATATTTTCCTTCCCGG 59.662 52.381 0.00 0.00 0.00 5.73
390 391 2.291741 GAGCTGCATATTTTCCTTCCCG 59.708 50.000 1.02 0.00 0.00 5.14
391 392 2.291741 CGAGCTGCATATTTTCCTTCCC 59.708 50.000 1.02 0.00 0.00 3.97
392 393 2.287248 GCGAGCTGCATATTTTCCTTCC 60.287 50.000 1.02 0.00 45.45 3.46
393 394 2.600792 CGCGAGCTGCATATTTTCCTTC 60.601 50.000 0.00 0.00 46.97 3.46
394 395 1.331756 CGCGAGCTGCATATTTTCCTT 59.668 47.619 0.00 0.00 46.97 3.36
395 396 0.940126 CGCGAGCTGCATATTTTCCT 59.060 50.000 0.00 0.00 46.97 3.36
396 397 0.040958 CCGCGAGCTGCATATTTTCC 60.041 55.000 8.23 0.00 46.97 3.13
397 398 0.937304 TCCGCGAGCTGCATATTTTC 59.063 50.000 8.23 0.00 46.97 2.29
398 399 0.940126 CTCCGCGAGCTGCATATTTT 59.060 50.000 8.23 0.00 46.97 1.82
399 400 0.882042 CCTCCGCGAGCTGCATATTT 60.882 55.000 8.23 0.00 46.97 1.40
400 401 1.301244 CCTCCGCGAGCTGCATATT 60.301 57.895 8.23 0.00 46.97 1.28
401 402 2.341543 CCTCCGCGAGCTGCATAT 59.658 61.111 8.23 0.00 46.97 1.78
402 403 4.592192 GCCTCCGCGAGCTGCATA 62.592 66.667 8.23 0.00 46.97 3.14
424 425 4.986587 TCGGTGGACGTGAACGCG 62.987 66.667 3.53 3.53 44.43 6.01
425 426 3.400590 GTCGGTGGACGTGAACGC 61.401 66.667 2.11 0.00 44.43 4.84
426 427 1.589461 TTGTCGGTGGACGTGAACG 60.589 57.895 0.00 0.40 46.49 3.95
427 428 0.806884 TGTTGTCGGTGGACGTGAAC 60.807 55.000 0.00 0.00 46.49 3.18
428 429 0.105224 ATGTTGTCGGTGGACGTGAA 59.895 50.000 0.00 0.00 46.49 3.18
429 430 0.598942 CATGTTGTCGGTGGACGTGA 60.599 55.000 0.00 0.00 46.49 4.35
430 431 0.878523 ACATGTTGTCGGTGGACGTG 60.879 55.000 0.00 0.00 46.49 4.49
431 432 0.179067 AACATGTTGTCGGTGGACGT 60.179 50.000 11.07 0.00 46.49 4.34
432 433 0.511221 GAACATGTTGTCGGTGGACG 59.489 55.000 17.58 0.00 46.49 4.79
433 434 0.511221 CGAACATGTTGTCGGTGGAC 59.489 55.000 17.58 0.00 43.71 4.02
434 435 0.601576 CCGAACATGTTGTCGGTGGA 60.602 55.000 24.63 0.00 36.78 4.02
435 436 1.573829 CCCGAACATGTTGTCGGTGG 61.574 60.000 28.41 15.95 38.48 4.61
436 437 0.601576 TCCCGAACATGTTGTCGGTG 60.602 55.000 28.41 21.69 38.48 4.94
437 438 0.320421 CTCCCGAACATGTTGTCGGT 60.320 55.000 28.41 1.82 38.48 4.69
438 439 1.019278 CCTCCCGAACATGTTGTCGG 61.019 60.000 25.57 25.57 39.24 4.79
439 440 1.635663 GCCTCCCGAACATGTTGTCG 61.636 60.000 17.58 14.37 0.00 4.35
440 441 0.321653 AGCCTCCCGAACATGTTGTC 60.322 55.000 17.58 0.97 0.00 3.18
441 442 0.606401 CAGCCTCCCGAACATGTTGT 60.606 55.000 17.58 0.00 0.00 3.32
442 443 0.606401 ACAGCCTCCCGAACATGTTG 60.606 55.000 17.58 8.34 0.00 3.33
443 444 0.321653 GACAGCCTCCCGAACATGTT 60.322 55.000 11.78 11.78 0.00 2.71
444 445 1.296715 GACAGCCTCCCGAACATGT 59.703 57.895 0.00 0.00 0.00 3.21
445 446 1.450312 GGACAGCCTCCCGAACATG 60.450 63.158 0.00 0.00 31.83 3.21
446 447 1.903877 CTGGACAGCCTCCCGAACAT 61.904 60.000 0.00 0.00 38.49 2.71
447 448 2.525629 TGGACAGCCTCCCGAACA 60.526 61.111 0.00 0.00 38.49 3.18
448 449 2.266055 CTGGACAGCCTCCCGAAC 59.734 66.667 0.00 0.00 38.49 3.95
458 459 3.775654 GGACCTCCGGCTGGACAG 61.776 72.222 11.27 7.81 40.17 3.51
459 460 4.316823 AGGACCTCCGGCTGGACA 62.317 66.667 11.27 0.00 40.17 4.02
460 461 3.462678 GAGGACCTCCGGCTGGAC 61.463 72.222 11.27 12.47 40.17 4.02
463 464 3.522731 CTCGAGGACCTCCGGCTG 61.523 72.222 16.13 1.41 42.08 4.85
464 465 3.707640 CTCTCGAGGACCTCCGGCT 62.708 68.421 16.13 0.00 42.08 5.52
465 466 3.213402 CTCTCGAGGACCTCCGGC 61.213 72.222 16.13 0.00 42.08 6.13
466 467 2.115911 CACTCTCGAGGACCTCCGG 61.116 68.421 16.13 8.77 42.08 5.14
467 468 2.766400 GCACTCTCGAGGACCTCCG 61.766 68.421 16.13 10.96 42.08 4.63
468 469 2.419739 GGCACTCTCGAGGACCTCC 61.420 68.421 16.13 4.36 0.00 4.30
469 470 2.766400 CGGCACTCTCGAGGACCTC 61.766 68.421 13.56 11.87 0.00 3.85
470 471 2.752238 CGGCACTCTCGAGGACCT 60.752 66.667 13.56 0.00 0.00 3.85
471 472 3.827898 CCGGCACTCTCGAGGACC 61.828 72.222 13.56 8.12 0.00 4.46
472 473 4.500116 GCCGGCACTCTCGAGGAC 62.500 72.222 24.80 0.00 0.00 3.85
492 493 4.554363 CCACGCTCCGCCTAGACG 62.554 72.222 0.00 0.00 0.00 4.18
493 494 4.874977 GCCACGCTCCGCCTAGAC 62.875 72.222 0.00 0.00 0.00 2.59
495 496 3.740128 ATTGCCACGCTCCGCCTAG 62.740 63.158 0.00 0.00 0.00 3.02
496 497 3.733344 GATTGCCACGCTCCGCCTA 62.733 63.158 0.00 0.00 0.00 3.93
506 507 2.933878 TACATCGCGGGGATTGCCAC 62.934 60.000 6.13 0.00 35.15 5.01
507 508 2.736826 TACATCGCGGGGATTGCCA 61.737 57.895 6.13 0.00 35.15 4.92
508 509 2.110213 TACATCGCGGGGATTGCC 59.890 61.111 6.13 0.00 31.28 4.52
509 510 1.222115 GAGTACATCGCGGGGATTGC 61.222 60.000 6.13 1.88 31.28 3.56
510 511 0.600255 GGAGTACATCGCGGGGATTG 60.600 60.000 6.13 4.24 31.28 2.67
511 512 1.046472 TGGAGTACATCGCGGGGATT 61.046 55.000 6.13 0.00 31.28 3.01
512 513 1.456892 TGGAGTACATCGCGGGGAT 60.457 57.895 6.13 1.15 35.09 3.85
513 514 2.043752 TGGAGTACATCGCGGGGA 60.044 61.111 6.13 0.00 0.00 4.81
514 515 2.417516 CTGGAGTACATCGCGGGG 59.582 66.667 6.13 0.36 0.00 5.73
515 516 2.279517 GCTGGAGTACATCGCGGG 60.280 66.667 6.13 0.81 0.00 6.13
516 517 1.589993 CAGCTGGAGTACATCGCGG 60.590 63.158 6.13 0.00 0.00 6.46
517 518 1.589993 CCAGCTGGAGTACATCGCG 60.590 63.158 29.88 0.00 37.39 5.87
518 519 1.816537 TCCAGCTGGAGTACATCGC 59.183 57.895 32.00 0.00 39.78 4.58
551 552 4.106925 CTCCTCCACCTGCTGCCC 62.107 72.222 0.00 0.00 0.00 5.36
552 553 3.005539 TCTCCTCCACCTGCTGCC 61.006 66.667 0.00 0.00 0.00 4.85
553 554 2.583520 CTCTCCTCCACCTGCTGC 59.416 66.667 0.00 0.00 0.00 5.25
554 555 1.624479 ATGCTCTCCTCCACCTGCTG 61.624 60.000 0.00 0.00 0.00 4.41
555 556 1.306825 ATGCTCTCCTCCACCTGCT 60.307 57.895 0.00 0.00 0.00 4.24
556 557 1.153208 CATGCTCTCCTCCACCTGC 60.153 63.158 0.00 0.00 0.00 4.85
557 558 1.153208 GCATGCTCTCCTCCACCTG 60.153 63.158 11.37 0.00 0.00 4.00
558 559 2.729479 CGCATGCTCTCCTCCACCT 61.729 63.158 17.13 0.00 0.00 4.00
559 560 2.202987 CGCATGCTCTCCTCCACC 60.203 66.667 17.13 0.00 0.00 4.61
560 561 2.202987 CCGCATGCTCTCCTCCAC 60.203 66.667 17.13 0.00 0.00 4.02
561 562 4.166888 GCCGCATGCTCTCCTCCA 62.167 66.667 17.13 0.00 36.87 3.86
562 563 4.925861 GGCCGCATGCTCTCCTCC 62.926 72.222 17.13 3.74 40.92 4.30
571 572 3.803082 CACAACCTCGGCCGCATG 61.803 66.667 23.51 18.05 0.00 4.06
580 581 3.112709 GCGGACGAGCACAACCTC 61.113 66.667 0.00 0.00 37.05 3.85
599 600 4.891727 CAGGATCGAACCCGGCGG 62.892 72.222 21.46 21.46 36.24 6.13
600 601 4.891727 CCAGGATCGAACCCGGCG 62.892 72.222 8.30 0.00 36.24 6.46
602 603 2.131709 TAGCCAGGATCGAACCCGG 61.132 63.158 9.59 9.59 36.24 5.73
603 604 1.067582 GTAGCCAGGATCGAACCCG 59.932 63.158 8.30 0.00 37.07 5.28
604 605 1.446366 GGTAGCCAGGATCGAACCC 59.554 63.158 8.30 3.48 0.00 4.11
605 606 1.049289 AGGGTAGCCAGGATCGAACC 61.049 60.000 14.62 2.97 0.00 3.62
606 607 0.105039 CAGGGTAGCCAGGATCGAAC 59.895 60.000 14.62 0.00 0.00 3.95
607 608 0.032515 TCAGGGTAGCCAGGATCGAA 60.033 55.000 14.62 0.00 0.00 3.71
608 609 0.468214 CTCAGGGTAGCCAGGATCGA 60.468 60.000 14.62 0.00 0.00 3.59
609 610 2.045280 CTCAGGGTAGCCAGGATCG 58.955 63.158 14.62 0.00 0.00 3.69
610 611 1.050988 TGCTCAGGGTAGCCAGGATC 61.051 60.000 14.62 6.64 42.05 3.36
611 612 1.003442 TGCTCAGGGTAGCCAGGAT 59.997 57.895 14.62 0.00 42.05 3.24
612 613 1.990060 GTGCTCAGGGTAGCCAGGA 60.990 63.158 14.62 9.35 42.05 3.86
613 614 2.586792 GTGCTCAGGGTAGCCAGG 59.413 66.667 14.62 4.95 42.05 4.45
614 615 2.185350 CGTGCTCAGGGTAGCCAG 59.815 66.667 14.62 5.18 42.05 4.85
615 616 2.283604 TCGTGCTCAGGGTAGCCA 60.284 61.111 14.62 0.00 42.05 4.75
616 617 2.496817 CTCGTGCTCAGGGTAGCC 59.503 66.667 1.60 1.60 42.05 3.93
617 618 1.889530 AACCTCGTGCTCAGGGTAGC 61.890 60.000 8.47 0.00 43.08 3.58
618 619 0.108615 CAACCTCGTGCTCAGGGTAG 60.109 60.000 8.47 0.00 35.01 3.18
619 620 1.541310 CCAACCTCGTGCTCAGGGTA 61.541 60.000 8.47 0.00 35.01 3.69
620 621 2.743718 CAACCTCGTGCTCAGGGT 59.256 61.111 8.47 2.57 35.01 4.34
621 622 2.046892 CCAACCTCGTGCTCAGGG 60.047 66.667 8.47 2.04 35.01 4.45
622 623 1.669115 CACCAACCTCGTGCTCAGG 60.669 63.158 3.62 3.62 37.03 3.86
623 624 0.668706 CTCACCAACCTCGTGCTCAG 60.669 60.000 0.00 0.00 0.00 3.35
624 625 1.367471 CTCACCAACCTCGTGCTCA 59.633 57.895 0.00 0.00 0.00 4.26
625 626 2.029844 GCTCACCAACCTCGTGCTC 61.030 63.158 0.00 0.00 0.00 4.26
626 627 2.031163 GCTCACCAACCTCGTGCT 59.969 61.111 0.00 0.00 0.00 4.40
627 628 3.414700 CGCTCACCAACCTCGTGC 61.415 66.667 0.00 0.00 0.00 5.34
628 629 3.414700 GCGCTCACCAACCTCGTG 61.415 66.667 0.00 0.00 0.00 4.35
631 632 3.414700 CACGCGCTCACCAACCTC 61.415 66.667 5.73 0.00 0.00 3.85
632 633 4.988598 CCACGCGCTCACCAACCT 62.989 66.667 5.73 0.00 0.00 3.50
633 634 4.980805 TCCACGCGCTCACCAACC 62.981 66.667 5.73 0.00 0.00 3.77
634 635 2.954753 CTTCCACGCGCTCACCAAC 61.955 63.158 5.73 0.00 0.00 3.77
635 636 2.664851 CTTCCACGCGCTCACCAA 60.665 61.111 5.73 0.00 0.00 3.67
636 637 4.680237 CCTTCCACGCGCTCACCA 62.680 66.667 5.73 0.00 0.00 4.17
669 670 4.388499 CCACCCTCAACGTCCCCG 62.388 72.222 0.00 0.00 40.83 5.73
670 671 4.717313 GCCACCCTCAACGTCCCC 62.717 72.222 0.00 0.00 0.00 4.81
672 673 3.819877 AACGCCACCCTCAACGTCC 62.820 63.158 0.00 0.00 37.87 4.79
673 674 2.280592 AACGCCACCCTCAACGTC 60.281 61.111 0.00 0.00 37.87 4.34
674 675 2.590575 CAACGCCACCCTCAACGT 60.591 61.111 0.00 0.00 41.16 3.99
675 676 4.025401 GCAACGCCACCCTCAACG 62.025 66.667 0.00 0.00 0.00 4.10
692 693 4.201122 GATGAGCCTGGCCCTGGG 62.201 72.222 16.57 8.86 0.00 4.45
693 694 4.559063 CGATGAGCCTGGCCCTGG 62.559 72.222 16.57 1.51 0.00 4.45
694 695 3.746949 GACGATGAGCCTGGCCCTG 62.747 68.421 16.57 3.72 0.00 4.45
695 696 3.474570 GACGATGAGCCTGGCCCT 61.475 66.667 16.57 0.00 0.00 5.19
696 697 4.899239 CGACGATGAGCCTGGCCC 62.899 72.222 16.57 3.45 0.00 5.80
697 698 3.665675 AACGACGATGAGCCTGGCC 62.666 63.158 16.57 7.66 0.00 5.36
698 699 2.125512 AACGACGATGAGCCTGGC 60.126 61.111 11.65 11.65 0.00 4.85
699 700 1.811266 CCAACGACGATGAGCCTGG 60.811 63.158 6.69 0.00 0.00 4.45
700 701 0.803768 CTCCAACGACGATGAGCCTG 60.804 60.000 6.69 0.00 0.00 4.85
701 702 1.251527 ACTCCAACGACGATGAGCCT 61.252 55.000 6.69 0.00 0.00 4.58
702 703 0.389948 AACTCCAACGACGATGAGCC 60.390 55.000 6.69 0.00 0.00 4.70
703 704 2.273370 TAACTCCAACGACGATGAGC 57.727 50.000 6.69 0.00 0.00 4.26
704 705 4.492570 GCAATTAACTCCAACGACGATGAG 60.493 45.833 6.69 8.75 0.00 2.90
705 706 3.369756 GCAATTAACTCCAACGACGATGA 59.630 43.478 6.69 0.00 0.00 2.92
706 707 3.124466 TGCAATTAACTCCAACGACGATG 59.876 43.478 0.00 0.00 0.00 3.84
707 708 3.124636 GTGCAATTAACTCCAACGACGAT 59.875 43.478 0.00 0.00 0.00 3.73
708 709 2.477375 GTGCAATTAACTCCAACGACGA 59.523 45.455 0.00 0.00 0.00 4.20
709 710 2.222213 TGTGCAATTAACTCCAACGACG 59.778 45.455 0.00 0.00 0.00 5.12
710 711 3.496884 TCTGTGCAATTAACTCCAACGAC 59.503 43.478 0.00 0.00 0.00 4.34
711 712 3.734463 TCTGTGCAATTAACTCCAACGA 58.266 40.909 0.00 0.00 0.00 3.85
712 713 4.024048 ACTTCTGTGCAATTAACTCCAACG 60.024 41.667 0.00 0.00 0.00 4.10
713 714 5.438761 ACTTCTGTGCAATTAACTCCAAC 57.561 39.130 0.00 0.00 0.00 3.77
714 715 5.472137 GGTACTTCTGTGCAATTAACTCCAA 59.528 40.000 0.00 0.00 0.00 3.53
1265 1371 3.593442 TCAATGGTGAAAGGAACCTGT 57.407 42.857 0.00 0.00 38.60 4.00
1365 1588 4.398319 CCTGTGTATGTTCCTTCAAAGGT 58.602 43.478 8.60 0.00 46.54 3.50
1380 1757 3.809324 GCTAAAAACCTCCTGCCTGTGTA 60.809 47.826 0.00 0.00 0.00 2.90
1546 1948 7.053498 TGCAAAATATACTCATGCTTGACCTA 58.947 34.615 0.00 0.00 37.86 3.08
2084 2487 2.300437 GAGTAAGTTGCTGGGTCTCTGT 59.700 50.000 0.00 0.00 0.00 3.41
2219 2622 2.493414 AGCTCTGCATTCTTCAGCTT 57.507 45.000 0.00 0.00 37.10 3.74
2361 2764 3.149981 CCCTTGAACTTCTCCTTCAACC 58.850 50.000 0.00 0.00 34.60 3.77
3084 3491 2.968574 GAGTGAGCTCATTGGGGATCTA 59.031 50.000 21.47 0.00 41.29 1.98
3155 3562 7.680442 TTTGCTTGTGTATCTTAATAGCACA 57.320 32.000 0.00 0.00 36.94 4.57
3408 3816 2.354401 CGAGCTGCAGGAAGGAGGA 61.354 63.158 17.12 0.00 35.99 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.