Multiple sequence alignment - TraesCS6B01G445000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G445000 chr6B 100.000 5102 0 0 1 5102 707180156 707175055 0.000000e+00 9422.0
1 TraesCS6B01G445000 chr6B 96.782 1678 51 3 2158 3833 11701799 11700123 0.000000e+00 2796.0
2 TraesCS6B01G445000 chr6B 100.000 43 0 0 2071 2113 11701972 11701930 4.230000e-11 80.5
3 TraesCS6B01G445000 chr2A 99.044 4918 32 1 1 4903 736454924 736450007 0.000000e+00 8807.0
4 TraesCS6B01G445000 chr2A 99.043 4389 24 2 530 4903 620706794 620711179 0.000000e+00 7856.0
5 TraesCS6B01G445000 chr2A 95.238 1344 55 6 733 2074 21215527 21216863 0.000000e+00 2119.0
6 TraesCS6B01G445000 chr2A 96.181 995 30 3 2158 3152 21218121 21219107 0.000000e+00 1620.0
7 TraesCS6B01G445000 chr2A 96.076 790 27 3 1 789 21214858 21215644 0.000000e+00 1284.0
8 TraesCS6B01G445000 chr2A 91.440 257 5 3 3922 4162 744844904 744844649 2.280000e-88 337.0
9 TraesCS6B01G445000 chr2A 89.883 257 9 6 3922 4162 21219681 21219936 1.070000e-81 315.0
10 TraesCS6B01G445000 chr2A 100.000 30 0 0 3852 3881 744844937 744844908 7.140000e-04 56.5
11 TraesCS6B01G445000 chr2A 100.000 29 0 0 3852 3880 21219648 21219676 3.000000e-03 54.7
12 TraesCS6B01G445000 chr4A 97.632 2027 31 3 2895 4905 622189808 622191833 0.000000e+00 3461.0
13 TraesCS6B01G445000 chr4A 98.319 119 1 1 138 255 622189690 622189808 1.860000e-49 207.0
14 TraesCS6B01G445000 chr4A 90.385 52 3 2 5032 5082 182478727 182478677 3.300000e-07 67.6
15 TraesCS6B01G445000 chr2B 97.630 2025 31 3 2895 4903 721700662 721702685 0.000000e+00 3458.0
16 TraesCS6B01G445000 chr2B 95.063 1357 61 4 647 2001 576685616 576684264 0.000000e+00 2130.0
17 TraesCS6B01G445000 chr2B 80.569 422 42 16 3373 3761 782163418 782163004 6.460000e-74 289.0
18 TraesCS6B01G445000 chr2B 98.305 118 2 0 138 255 721700545 721700662 1.860000e-49 207.0
19 TraesCS6B01G445000 chr2B 100.000 37 0 0 5031 5067 674040301 674040337 9.170000e-08 69.4
20 TraesCS6B01G445000 chr2B 97.436 39 1 0 2071 2109 109404492 109404530 3.300000e-07 67.6
21 TraesCS6B01G445000 chr3B 98.099 1578 15 1 3341 4903 785318798 785320375 0.000000e+00 2734.0
22 TraesCS6B01G445000 chr3B 93.750 272 13 1 425 696 42497130 42497397 6.150000e-109 405.0
23 TraesCS6B01G445000 chr3B 97.938 97 2 0 476 572 769481619 769481715 8.790000e-38 169.0
24 TraesCS6B01G445000 chr7B 95.759 1344 51 4 733 2074 585480075 585478736 0.000000e+00 2161.0
25 TraesCS6B01G445000 chr7B 96.281 995 30 4 2158 3152 585477479 585476492 0.000000e+00 1626.0
26 TraesCS6B01G445000 chr7B 96.582 790 25 2 1 789 585480744 585479956 0.000000e+00 1308.0
27 TraesCS6B01G445000 chr7B 94.309 738 28 6 4168 4905 537733965 537733242 0.000000e+00 1118.0
28 TraesCS6B01G445000 chr7B 93.750 752 29 8 4155 4905 585475635 585474901 0.000000e+00 1112.0
29 TraesCS6B01G445000 chr7B 82.979 423 41 8 3373 3766 743627803 743628223 2.260000e-93 353.0
30 TraesCS6B01G445000 chr7B 90.272 257 8 4 3922 4162 585475918 585475663 2.290000e-83 320.0
31 TraesCS6B01G445000 chr7B 82.890 263 26 12 3504 3761 744062766 744063014 8.600000e-53 219.0
32 TraesCS6B01G445000 chr7B 97.087 103 2 1 4060 4162 537734114 537734013 6.790000e-39 172.0
33 TraesCS6B01G445000 chr7B 89.474 114 6 4 3652 3759 745255295 745255408 6.890000e-29 139.0
34 TraesCS6B01G445000 chr7B 95.000 80 3 1 3373 3451 743625607 743625686 1.930000e-24 124.0
35 TraesCS6B01G445000 chr7B 89.247 93 10 0 3373 3465 645580088 645579996 3.230000e-22 117.0
36 TraesCS6B01G445000 chr7B 100.000 29 0 0 3852 3880 585475951 585475923 3.000000e-03 54.7
37 TraesCS6B01G445000 chrUn 95.063 1357 60 5 647 2001 38658884 38660235 0.000000e+00 2128.0
38 TraesCS6B01G445000 chrUn 97.397 999 21 3 1077 2074 316936553 316937547 0.000000e+00 1696.0
39 TraesCS6B01G445000 chrUn 96.482 995 32 2 2158 3152 316938806 316939797 0.000000e+00 1640.0
40 TraesCS6B01G445000 chrUn 96.281 995 34 2 2158 3152 379280354 379279363 0.000000e+00 1629.0
41 TraesCS6B01G445000 chrUn 94.933 375 15 3 416 789 431333004 431333375 7.360000e-163 584.0
42 TraesCS6B01G445000 chrUn 97.321 336 9 0 1 336 345821661 345821996 5.730000e-159 571.0
43 TraesCS6B01G445000 chr1B 94.764 1356 66 3 647 2001 32422892 32424243 0.000000e+00 2106.0
44 TraesCS6B01G445000 chr5B 92.920 1356 73 15 647 2001 591688175 591686842 0.000000e+00 1951.0
45 TraesCS6B01G445000 chr5B 90.909 55 5 0 5013 5067 511715541 511715595 1.970000e-09 75.0
46 TraesCS6B01G445000 chr5A 95.909 880 32 2 2238 3117 78916001 78915126 0.000000e+00 1423.0
47 TraesCS6B01G445000 chr5A 95.909 880 32 2 2238 3117 395306238 395307113 0.000000e+00 1423.0
48 TraesCS6B01G445000 chr5A 94.701 736 25 6 4168 4903 395308207 395308928 0.000000e+00 1131.0
49 TraesCS6B01G445000 chr5A 94.317 739 28 6 4168 4906 78914026 78913302 0.000000e+00 1120.0
50 TraesCS6B01G445000 chr5A 96.522 115 2 2 4048 4162 78914186 78914074 6.740000e-44 189.0
51 TraesCS6B01G445000 chr5A 96.522 115 2 2 4048 4162 549366711 549366599 6.740000e-44 189.0
52 TraesCS6B01G445000 chr5A 97.938 97 2 0 476 572 458334559 458334655 8.790000e-38 169.0
53 TraesCS6B01G445000 chr7A 94.437 737 26 7 4168 4904 85816123 85816844 0.000000e+00 1120.0
54 TraesCS6B01G445000 chr7A 98.969 97 1 0 476 572 66646200 66646104 1.890000e-39 174.0
55 TraesCS6B01G445000 chr7A 85.714 70 9 1 3942 4010 1701665 1701596 7.090000e-09 73.1
56 TraesCS6B01G445000 chr7A 93.878 49 2 1 5021 5068 530506410 530506458 7.090000e-09 73.1
57 TraesCS6B01G445000 chr7A 97.500 40 0 1 5029 5067 107639761 107639800 3.300000e-07 67.6
58 TraesCS6B01G445000 chr7A 79.310 87 9 5 3150 3236 736336649 736336572 9.000000e-03 52.8
59 TraesCS6B01G445000 chr6A 97.938 97 2 0 476 572 15465692 15465788 8.790000e-38 169.0
60 TraesCS6B01G445000 chr5D 90.566 53 3 2 5031 5081 457021661 457021609 9.170000e-08 69.4
61 TraesCS6B01G445000 chr3D 90.566 53 3 2 5032 5082 105144913 105144965 9.170000e-08 69.4
62 TraesCS6B01G445000 chr3D 90.385 52 3 2 5032 5082 303523605 303523555 3.300000e-07 67.6
63 TraesCS6B01G445000 chr3D 89.091 55 5 1 5029 5082 591972726 591972672 3.300000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G445000 chr6B 707175055 707180156 5101 True 9422.000000 9422 100.000000 1 5102 1 chr6B.!!$R1 5101
1 TraesCS6B01G445000 chr6B 11700123 11701972 1849 True 1438.250000 2796 98.391000 2071 3833 2 chr6B.!!$R2 1762
2 TraesCS6B01G445000 chr2A 736450007 736454924 4917 True 8807.000000 8807 99.044000 1 4903 1 chr2A.!!$R1 4902
3 TraesCS6B01G445000 chr2A 620706794 620711179 4385 False 7856.000000 7856 99.043000 530 4903 1 chr2A.!!$F1 4373
4 TraesCS6B01G445000 chr2A 21214858 21219936 5078 False 1078.540000 2119 95.475600 1 4162 5 chr2A.!!$F2 4161
5 TraesCS6B01G445000 chr4A 622189690 622191833 2143 False 1834.000000 3461 97.975500 138 4905 2 chr4A.!!$F1 4767
6 TraesCS6B01G445000 chr2B 576684264 576685616 1352 True 2130.000000 2130 95.063000 647 2001 1 chr2B.!!$R1 1354
7 TraesCS6B01G445000 chr2B 721700545 721702685 2140 False 1832.500000 3458 97.967500 138 4903 2 chr2B.!!$F3 4765
8 TraesCS6B01G445000 chr3B 785318798 785320375 1577 False 2734.000000 2734 98.099000 3341 4903 1 chr3B.!!$F3 1562
9 TraesCS6B01G445000 chr7B 585474901 585480744 5843 True 1096.950000 2161 95.440667 1 4905 6 chr7B.!!$R3 4904
10 TraesCS6B01G445000 chr7B 537733242 537734114 872 True 645.000000 1118 95.698000 4060 4905 2 chr7B.!!$R2 845
11 TraesCS6B01G445000 chr7B 743625607 743628223 2616 False 238.500000 353 88.989500 3373 3766 2 chr7B.!!$F3 393
12 TraesCS6B01G445000 chrUn 38658884 38660235 1351 False 2128.000000 2128 95.063000 647 2001 1 chrUn.!!$F1 1354
13 TraesCS6B01G445000 chrUn 316936553 316939797 3244 False 1668.000000 1696 96.939500 1077 3152 2 chrUn.!!$F4 2075
14 TraesCS6B01G445000 chrUn 379279363 379280354 991 True 1629.000000 1629 96.281000 2158 3152 1 chrUn.!!$R1 994
15 TraesCS6B01G445000 chr1B 32422892 32424243 1351 False 2106.000000 2106 94.764000 647 2001 1 chr1B.!!$F1 1354
16 TraesCS6B01G445000 chr5B 591686842 591688175 1333 True 1951.000000 1951 92.920000 647 2001 1 chr5B.!!$R1 1354
17 TraesCS6B01G445000 chr5A 395306238 395308928 2690 False 1277.000000 1423 95.305000 2238 4903 2 chr5A.!!$F2 2665
18 TraesCS6B01G445000 chr5A 78913302 78916001 2699 True 910.666667 1423 95.582667 2238 4906 3 chr5A.!!$R2 2668
19 TraesCS6B01G445000 chr7A 85816123 85816844 721 False 1120.000000 1120 94.437000 4168 4904 1 chr7A.!!$F1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 430 5.477984 CCATCTTTTTGATCCAGAGGTTTGA 59.522 40.000 0.00 0.0 32.05 2.69 F
1036 1038 0.988832 AGTCCGGCCACCAAGAAATA 59.011 50.000 2.24 0.0 0.00 1.40 F
1437 1439 2.158623 TGTCAAAGGCTGTGTGGATCTT 60.159 45.455 4.24 0.0 0.00 2.40 F
1851 1854 9.066892 TGAAAGCAGAATATCAAAACTTGTAGT 57.933 29.630 0.00 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1417 1419 2.191128 AGATCCACACAGCCTTTGAC 57.809 50.000 0.00 0.00 0.00 3.18 R
3310 4698 2.075426 AAAGACAAGCTTGTGCCGGC 62.075 55.000 35.67 22.73 42.43 6.13 R
3792 7480 2.291800 CCAACTCCCATGGGTCAGAAAT 60.292 50.000 30.28 10.35 34.15 2.17 R
4539 8523 7.824779 GGTGACTAAAAGAATGTAGAGACCAAT 59.175 37.037 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
429 430 5.477984 CCATCTTTTTGATCCAGAGGTTTGA 59.522 40.000 0.00 0.00 32.05 2.69
1036 1038 0.988832 AGTCCGGCCACCAAGAAATA 59.011 50.000 2.24 0.00 0.00 1.40
1066 1068 2.711009 TCTCAAGGTCAACATTCTGGGT 59.289 45.455 0.00 0.00 0.00 4.51
1437 1439 2.158623 TGTCAAAGGCTGTGTGGATCTT 60.159 45.455 4.24 0.00 0.00 2.40
1851 1854 9.066892 TGAAAGCAGAATATCAAAACTTGTAGT 57.933 29.630 0.00 0.00 0.00 2.73
3792 7480 6.726379 TGGTGGACAATTGGATAGTTATTGA 58.274 36.000 10.83 0.00 34.28 2.57
3897 7824 4.332828 GTGGCAAAGTAGGTAGGTGATTT 58.667 43.478 0.00 0.00 0.00 2.17
4322 8306 6.030379 TGCAAAACAAAATTCAGTTTAGCG 57.970 33.333 8.18 3.45 36.98 4.26
4479 8463 7.605309 CCTATGATATAGTTGCTTTCTCATGCA 59.395 37.037 0.00 0.00 37.42 3.96
4539 8523 7.482169 AAGATGTCTAGTCTCCAACATGTAA 57.518 36.000 0.00 0.00 32.70 2.41
4754 8738 4.104102 TGACATTTAGTGACCAGGGTTCTT 59.896 41.667 0.00 0.00 0.00 2.52
4843 8827 2.834113 ACCAATAGACCACTAGCCACT 58.166 47.619 0.00 0.00 31.78 4.00
4906 8890 6.707440 AACTCATGTCTCTAGTAGTGATGG 57.293 41.667 5.28 0.00 0.00 3.51
4907 8891 5.761205 ACTCATGTCTCTAGTAGTGATGGT 58.239 41.667 5.28 0.31 0.00 3.55
4908 8892 5.592282 ACTCATGTCTCTAGTAGTGATGGTG 59.408 44.000 5.28 5.53 0.00 4.17
4909 8893 5.755849 TCATGTCTCTAGTAGTGATGGTGA 58.244 41.667 5.28 7.37 0.00 4.02
4910 8894 6.187682 TCATGTCTCTAGTAGTGATGGTGAA 58.812 40.000 5.28 0.00 0.00 3.18
4911 8895 6.319911 TCATGTCTCTAGTAGTGATGGTGAAG 59.680 42.308 5.28 0.00 0.00 3.02
4912 8896 5.571285 TGTCTCTAGTAGTGATGGTGAAGT 58.429 41.667 5.28 0.00 0.00 3.01
4913 8897 5.416013 TGTCTCTAGTAGTGATGGTGAAGTG 59.584 44.000 5.28 0.00 0.00 3.16
4914 8898 4.950475 TCTCTAGTAGTGATGGTGAAGTGG 59.050 45.833 0.00 0.00 0.00 4.00
4915 8899 4.673968 TCTAGTAGTGATGGTGAAGTGGT 58.326 43.478 0.00 0.00 0.00 4.16
4916 8900 5.823312 TCTAGTAGTGATGGTGAAGTGGTA 58.177 41.667 0.00 0.00 0.00 3.25
4917 8901 5.886474 TCTAGTAGTGATGGTGAAGTGGTAG 59.114 44.000 0.00 0.00 0.00 3.18
4918 8902 4.417437 AGTAGTGATGGTGAAGTGGTAGT 58.583 43.478 0.00 0.00 0.00 2.73
4919 8903 5.577100 AGTAGTGATGGTGAAGTGGTAGTA 58.423 41.667 0.00 0.00 0.00 1.82
4920 8904 6.014647 AGTAGTGATGGTGAAGTGGTAGTAA 58.985 40.000 0.00 0.00 0.00 2.24
4921 8905 5.818678 AGTGATGGTGAAGTGGTAGTAAA 57.181 39.130 0.00 0.00 0.00 2.01
4922 8906 6.374417 AGTGATGGTGAAGTGGTAGTAAAT 57.626 37.500 0.00 0.00 0.00 1.40
4923 8907 6.173339 AGTGATGGTGAAGTGGTAGTAAATG 58.827 40.000 0.00 0.00 0.00 2.32
4924 8908 5.354234 GTGATGGTGAAGTGGTAGTAAATGG 59.646 44.000 0.00 0.00 0.00 3.16
4925 8909 4.986054 TGGTGAAGTGGTAGTAAATGGT 57.014 40.909 0.00 0.00 0.00 3.55
4926 8910 6.213802 TGATGGTGAAGTGGTAGTAAATGGTA 59.786 38.462 0.00 0.00 0.00 3.25
4927 8911 6.436738 TGGTGAAGTGGTAGTAAATGGTAA 57.563 37.500 0.00 0.00 0.00 2.85
4928 8912 6.232692 TGGTGAAGTGGTAGTAAATGGTAAC 58.767 40.000 0.00 0.00 0.00 2.50
4929 8913 5.645067 GGTGAAGTGGTAGTAAATGGTAACC 59.355 44.000 0.00 0.00 0.00 2.85
4930 8914 5.349543 GTGAAGTGGTAGTAAATGGTAACCG 59.650 44.000 0.00 0.00 32.69 4.44
4931 8915 5.011943 TGAAGTGGTAGTAAATGGTAACCGT 59.988 40.000 0.00 0.00 32.69 4.83
4932 8916 4.824289 AGTGGTAGTAAATGGTAACCGTG 58.176 43.478 0.00 0.00 32.69 4.94
4933 8917 3.934579 GTGGTAGTAAATGGTAACCGTGG 59.065 47.826 0.00 0.00 32.69 4.94
4934 8918 3.582208 TGGTAGTAAATGGTAACCGTGGT 59.418 43.478 0.00 0.00 32.69 4.16
4935 8919 4.041444 TGGTAGTAAATGGTAACCGTGGTT 59.959 41.667 9.57 9.57 41.65 3.67
4936 8920 5.247110 TGGTAGTAAATGGTAACCGTGGTTA 59.753 40.000 7.40 7.40 39.31 2.85
4937 8921 6.070309 TGGTAGTAAATGGTAACCGTGGTTAT 60.070 38.462 14.19 1.49 41.77 1.89
4938 8922 6.823182 GGTAGTAAATGGTAACCGTGGTTATT 59.177 38.462 14.19 7.50 41.77 1.40
4939 8923 6.746745 AGTAAATGGTAACCGTGGTTATTG 57.253 37.500 14.19 0.00 41.77 1.90
4940 8924 6.474630 AGTAAATGGTAACCGTGGTTATTGA 58.525 36.000 14.19 2.96 41.77 2.57
4941 8925 5.890424 AAATGGTAACCGTGGTTATTGAG 57.110 39.130 14.19 0.00 41.77 3.02
4942 8926 3.337694 TGGTAACCGTGGTTATTGAGG 57.662 47.619 14.19 0.00 41.77 3.86
4943 8927 2.638855 TGGTAACCGTGGTTATTGAGGT 59.361 45.455 14.19 0.00 41.77 3.85
4944 8928 3.837146 TGGTAACCGTGGTTATTGAGGTA 59.163 43.478 14.19 0.00 41.77 3.08
4945 8929 4.285517 TGGTAACCGTGGTTATTGAGGTAA 59.714 41.667 14.19 0.00 41.77 2.85
4946 8930 4.631377 GGTAACCGTGGTTATTGAGGTAAC 59.369 45.833 14.19 1.48 41.77 2.50
4947 8931 4.628963 AACCGTGGTTATTGAGGTAACT 57.371 40.909 1.57 0.00 43.87 2.24
4948 8932 4.320870 AACCGTGGTTATTGAGGTAACTG 58.679 43.478 1.57 0.00 41.95 3.16
4949 8933 4.202388 AACCGTGGTTATTGAGGTAACTGT 60.202 41.667 1.57 0.00 41.95 3.55
4950 8934 6.257552 AACCGTGGTTATTGAGGTAACTGTG 61.258 44.000 1.57 0.00 41.95 3.66
4951 8935 9.829975 TAACCGTGGTTATTGAGGTAACTGTGG 62.830 44.444 7.40 0.00 43.11 4.17
4971 8955 4.989279 GGTAACAATGGCAGAACATGAT 57.011 40.909 0.00 0.00 0.00 2.45
4972 8956 4.925068 GGTAACAATGGCAGAACATGATC 58.075 43.478 0.00 0.00 0.00 2.92
4973 8957 4.202050 GGTAACAATGGCAGAACATGATCC 60.202 45.833 0.00 0.00 0.00 3.36
4974 8958 3.377253 ACAATGGCAGAACATGATCCT 57.623 42.857 0.00 0.00 0.00 3.24
4975 8959 4.508551 ACAATGGCAGAACATGATCCTA 57.491 40.909 0.00 0.00 0.00 2.94
4976 8960 5.057843 ACAATGGCAGAACATGATCCTAT 57.942 39.130 0.00 0.00 0.00 2.57
4977 8961 4.825634 ACAATGGCAGAACATGATCCTATG 59.174 41.667 0.00 0.00 0.00 2.23
4978 8962 3.497103 TGGCAGAACATGATCCTATGG 57.503 47.619 0.00 0.00 32.32 2.74
4979 8963 2.779430 TGGCAGAACATGATCCTATGGT 59.221 45.455 0.00 0.00 32.32 3.55
4980 8964 3.973305 TGGCAGAACATGATCCTATGGTA 59.027 43.478 0.00 0.00 32.32 3.25
4981 8965 4.202357 TGGCAGAACATGATCCTATGGTAC 60.202 45.833 0.00 0.00 32.32 3.34
4997 8981 3.666274 TGGTACAACGATAAAGGTGGTG 58.334 45.455 0.00 0.00 31.92 4.17
4998 8982 3.324268 TGGTACAACGATAAAGGTGGTGA 59.676 43.478 0.00 0.00 31.92 4.02
4999 8983 3.930848 GGTACAACGATAAAGGTGGTGAG 59.069 47.826 0.00 0.00 31.99 3.51
5000 8984 2.423577 ACAACGATAAAGGTGGTGAGC 58.576 47.619 0.00 0.00 31.99 4.26
5001 8985 2.038557 ACAACGATAAAGGTGGTGAGCT 59.961 45.455 0.00 0.00 31.99 4.09
5002 8986 3.074412 CAACGATAAAGGTGGTGAGCTT 58.926 45.455 0.00 0.00 41.82 3.74
5004 8988 3.074412 ACGATAAAGGTGGTGAGCTTTG 58.926 45.455 9.01 0.00 46.84 2.77
5005 8989 3.244422 ACGATAAAGGTGGTGAGCTTTGA 60.244 43.478 9.01 0.00 46.84 2.69
5006 8990 3.751175 CGATAAAGGTGGTGAGCTTTGAA 59.249 43.478 9.01 0.00 46.84 2.69
5007 8991 4.215399 CGATAAAGGTGGTGAGCTTTGAAA 59.785 41.667 9.01 0.00 46.84 2.69
5008 8992 5.106157 CGATAAAGGTGGTGAGCTTTGAAAT 60.106 40.000 9.01 0.00 46.84 2.17
5009 8993 6.570378 CGATAAAGGTGGTGAGCTTTGAAATT 60.570 38.462 9.01 0.00 46.84 1.82
5010 8994 7.361713 CGATAAAGGTGGTGAGCTTTGAAATTA 60.362 37.037 9.01 0.00 46.84 1.40
5011 8995 6.478512 AAAGGTGGTGAGCTTTGAAATTAA 57.521 33.333 0.00 0.00 45.95 1.40
5012 8996 6.478512 AAGGTGGTGAGCTTTGAAATTAAA 57.521 33.333 0.00 0.00 36.48 1.52
5013 8997 5.842907 AGGTGGTGAGCTTTGAAATTAAAC 58.157 37.500 0.00 0.00 0.00 2.01
5014 8998 5.362430 AGGTGGTGAGCTTTGAAATTAAACA 59.638 36.000 0.00 0.00 0.00 2.83
5015 8999 6.045955 GGTGGTGAGCTTTGAAATTAAACAA 58.954 36.000 0.00 0.00 0.00 2.83
5016 9000 6.536941 GGTGGTGAGCTTTGAAATTAAACAAA 59.463 34.615 0.00 0.00 35.26 2.83
5017 9001 7.398746 GTGGTGAGCTTTGAAATTAAACAAAC 58.601 34.615 0.00 0.00 33.42 2.93
5018 9002 7.277760 GTGGTGAGCTTTGAAATTAAACAAACT 59.722 33.333 0.00 0.00 33.42 2.66
5019 9003 8.470805 TGGTGAGCTTTGAAATTAAACAAACTA 58.529 29.630 0.00 0.00 33.42 2.24
5020 9004 8.752254 GGTGAGCTTTGAAATTAAACAAACTAC 58.248 33.333 0.00 0.00 33.42 2.73
5021 9005 8.469125 GTGAGCTTTGAAATTAAACAAACTACG 58.531 33.333 0.00 0.00 33.42 3.51
5022 9006 7.166804 TGAGCTTTGAAATTAAACAAACTACGC 59.833 33.333 0.00 0.00 33.42 4.42
5023 9007 7.200455 AGCTTTGAAATTAAACAAACTACGCT 58.800 30.769 0.00 0.00 32.84 5.07
5024 9008 7.378728 AGCTTTGAAATTAAACAAACTACGCTC 59.621 33.333 0.00 0.00 32.51 5.03
5025 9009 7.166804 GCTTTGAAATTAAACAAACTACGCTCA 59.833 33.333 0.00 0.00 33.42 4.26
5026 9010 9.180678 CTTTGAAATTAAACAAACTACGCTCAT 57.819 29.630 0.00 0.00 33.42 2.90
5027 9011 8.500837 TTGAAATTAAACAAACTACGCTCATG 57.499 30.769 0.00 0.00 0.00 3.07
5028 9012 7.866729 TGAAATTAAACAAACTACGCTCATGA 58.133 30.769 0.00 0.00 0.00 3.07
5029 9013 7.801315 TGAAATTAAACAAACTACGCTCATGAC 59.199 33.333 0.00 0.00 0.00 3.06
5030 9014 7.435068 AATTAAACAAACTACGCTCATGACT 57.565 32.000 0.00 0.00 0.00 3.41
5031 9015 6.854496 TTAAACAAACTACGCTCATGACTT 57.146 33.333 0.00 0.00 0.00 3.01
5032 9016 5.751243 AAACAAACTACGCTCATGACTTT 57.249 34.783 0.00 0.00 0.00 2.66
5033 9017 5.751243 AACAAACTACGCTCATGACTTTT 57.249 34.783 0.00 0.00 0.00 2.27
5034 9018 5.751243 ACAAACTACGCTCATGACTTTTT 57.249 34.783 0.00 0.00 0.00 1.94
5057 9041 3.307829 CTCGAATACGCACGAGTGT 57.692 52.632 4.12 4.12 46.90 3.55
5058 9042 0.907837 CTCGAATACGCACGAGTGTG 59.092 55.000 14.40 14.40 46.90 3.82
5069 9053 2.792749 CACGAGTGTGCGTATCATACA 58.207 47.619 0.00 0.00 43.59 2.29
5070 9054 3.175929 CACGAGTGTGCGTATCATACAA 58.824 45.455 0.00 0.00 43.59 2.41
5071 9055 3.610677 CACGAGTGTGCGTATCATACAAA 59.389 43.478 0.00 0.00 43.59 2.83
5072 9056 4.090786 CACGAGTGTGCGTATCATACAAAA 59.909 41.667 0.00 0.00 43.59 2.44
5073 9057 4.687018 ACGAGTGTGCGTATCATACAAAAA 59.313 37.500 0.00 0.00 43.61 1.94
5074 9058 5.163992 ACGAGTGTGCGTATCATACAAAAAG 60.164 40.000 0.00 0.00 43.61 2.27
5075 9059 4.969816 AGTGTGCGTATCATACAAAAAGC 58.030 39.130 0.00 0.00 39.02 3.51
5076 9060 4.454161 AGTGTGCGTATCATACAAAAAGCA 59.546 37.500 0.00 0.00 39.02 3.91
5077 9061 5.049060 AGTGTGCGTATCATACAAAAAGCAA 60.049 36.000 0.00 0.00 39.02 3.91
5078 9062 5.627367 GTGTGCGTATCATACAAAAAGCAAA 59.373 36.000 0.00 0.00 36.87 3.68
5079 9063 6.143118 GTGTGCGTATCATACAAAAAGCAAAA 59.857 34.615 0.00 0.00 36.87 2.44
5080 9064 6.362016 TGTGCGTATCATACAAAAAGCAAAAG 59.638 34.615 0.00 0.00 35.05 2.27
5081 9065 6.580791 GTGCGTATCATACAAAAAGCAAAAGA 59.419 34.615 0.00 0.00 35.05 2.52
5082 9066 7.114247 GTGCGTATCATACAAAAAGCAAAAGAA 59.886 33.333 0.00 0.00 35.05 2.52
5083 9067 7.812191 TGCGTATCATACAAAAAGCAAAAGAAT 59.188 29.630 0.00 0.00 0.00 2.40
5084 9068 8.647226 GCGTATCATACAAAAAGCAAAAGAATT 58.353 29.630 0.00 0.00 0.00 2.17
5088 9072 8.592105 TCATACAAAAAGCAAAAGAATTCCTG 57.408 30.769 0.65 0.00 0.00 3.86
5089 9073 7.656948 TCATACAAAAAGCAAAAGAATTCCTGG 59.343 33.333 0.65 0.00 0.00 4.45
5090 9074 5.744171 ACAAAAAGCAAAAGAATTCCTGGT 58.256 33.333 0.65 0.31 0.00 4.00
5091 9075 5.585844 ACAAAAAGCAAAAGAATTCCTGGTG 59.414 36.000 0.65 0.00 0.00 4.17
5092 9076 5.612725 AAAAGCAAAAGAATTCCTGGTGA 57.387 34.783 0.65 0.00 0.00 4.02
5093 9077 5.612725 AAAGCAAAAGAATTCCTGGTGAA 57.387 34.783 0.65 0.00 37.38 3.18
5094 9078 5.612725 AAGCAAAAGAATTCCTGGTGAAA 57.387 34.783 0.65 0.00 36.33 2.69
5095 9079 5.813513 AGCAAAAGAATTCCTGGTGAAAT 57.186 34.783 0.65 0.00 36.33 2.17
5096 9080 6.178607 AGCAAAAGAATTCCTGGTGAAATT 57.821 33.333 0.65 0.00 36.33 1.82
5097 9081 7.301868 AGCAAAAGAATTCCTGGTGAAATTA 57.698 32.000 0.65 0.00 36.33 1.40
5098 9082 7.734942 AGCAAAAGAATTCCTGGTGAAATTAA 58.265 30.769 0.65 0.00 36.33 1.40
5099 9083 8.377799 AGCAAAAGAATTCCTGGTGAAATTAAT 58.622 29.630 0.65 0.00 36.33 1.40
5100 9084 8.659491 GCAAAAGAATTCCTGGTGAAATTAATC 58.341 33.333 0.65 0.00 36.33 1.75
5101 9085 9.933723 CAAAAGAATTCCTGGTGAAATTAATCT 57.066 29.630 0.65 0.00 36.33 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
429 430 7.406031 AGCATCATCTTCATTGACTTGATTT 57.594 32.000 3.58 0.00 0.00 2.17
1036 1038 1.299976 GACCTTGAGATTGCGGGGT 59.700 57.895 0.00 0.00 0.00 4.95
1066 1068 4.264253 CTGGATTTTGATGCTGAGGTACA 58.736 43.478 0.00 0.00 0.00 2.90
1363 1365 6.920569 AAGCTACGAAGAAAGAACTCAAAA 57.079 33.333 0.00 0.00 0.00 2.44
1417 1419 2.191128 AGATCCACACAGCCTTTGAC 57.809 50.000 0.00 0.00 0.00 3.18
1437 1439 9.561069 AAACTTTTGTAGCTTGAAGAGAATAGA 57.439 29.630 0.00 0.00 0.00 1.98
3310 4698 2.075426 AAAGACAAGCTTGTGCCGGC 62.075 55.000 35.67 22.73 42.43 6.13
3792 7480 2.291800 CCAACTCCCATGGGTCAGAAAT 60.292 50.000 30.28 10.35 34.15 2.17
4539 8523 7.824779 GGTGACTAAAAGAATGTAGAGACCAAT 59.175 37.037 0.00 0.00 0.00 3.16
4754 8738 7.759886 GCTATAGATATTGAGCGACCAACATTA 59.240 37.037 3.21 0.00 0.00 1.90
4843 8827 7.390996 TGATCGGTTGCTAAAGGTACAAAATTA 59.609 33.333 0.00 0.00 0.00 1.40
4906 8890 5.349543 CGGTTACCATTTACTACCACTTCAC 59.650 44.000 1.13 0.00 0.00 3.18
4907 8891 5.011943 ACGGTTACCATTTACTACCACTTCA 59.988 40.000 1.13 0.00 0.00 3.02
4908 8892 5.349543 CACGGTTACCATTTACTACCACTTC 59.650 44.000 1.13 0.00 0.00 3.01
4909 8893 5.240121 CACGGTTACCATTTACTACCACTT 58.760 41.667 1.13 0.00 0.00 3.16
4910 8894 4.322953 CCACGGTTACCATTTACTACCACT 60.323 45.833 1.13 0.00 0.00 4.00
4911 8895 3.934579 CCACGGTTACCATTTACTACCAC 59.065 47.826 1.13 0.00 0.00 4.16
4912 8896 3.582208 ACCACGGTTACCATTTACTACCA 59.418 43.478 1.13 0.00 0.00 3.25
4913 8897 4.206477 ACCACGGTTACCATTTACTACC 57.794 45.455 1.13 0.00 0.00 3.18
4914 8898 7.548780 TCAATAACCACGGTTACCATTTACTAC 59.451 37.037 10.81 0.00 42.44 2.73
4915 8899 7.619050 TCAATAACCACGGTTACCATTTACTA 58.381 34.615 10.81 0.00 42.44 1.82
4916 8900 6.474630 TCAATAACCACGGTTACCATTTACT 58.525 36.000 10.81 0.00 42.44 2.24
4917 8901 6.183360 CCTCAATAACCACGGTTACCATTTAC 60.183 42.308 10.81 0.00 42.44 2.01
4918 8902 5.881443 CCTCAATAACCACGGTTACCATTTA 59.119 40.000 10.81 0.00 42.44 1.40
4919 8903 4.703093 CCTCAATAACCACGGTTACCATTT 59.297 41.667 10.81 0.00 42.44 2.32
4920 8904 4.263594 ACCTCAATAACCACGGTTACCATT 60.264 41.667 10.81 0.62 42.44 3.16
4921 8905 3.264964 ACCTCAATAACCACGGTTACCAT 59.735 43.478 10.81 0.00 42.44 3.55
4922 8906 2.638855 ACCTCAATAACCACGGTTACCA 59.361 45.455 10.81 0.00 42.44 3.25
4923 8907 3.339253 ACCTCAATAACCACGGTTACC 57.661 47.619 10.81 0.00 42.44 2.85
4924 8908 5.349543 CAGTTACCTCAATAACCACGGTTAC 59.650 44.000 10.81 0.00 42.44 2.50
4925 8909 5.011943 ACAGTTACCTCAATAACCACGGTTA 59.988 40.000 10.98 10.98 43.56 2.85
4926 8910 4.202388 ACAGTTACCTCAATAACCACGGTT 60.202 41.667 6.70 6.70 41.65 4.44
4927 8911 3.325716 ACAGTTACCTCAATAACCACGGT 59.674 43.478 0.00 0.00 35.95 4.83
4928 8912 3.682858 CACAGTTACCTCAATAACCACGG 59.317 47.826 0.00 0.00 35.95 4.94
4929 8913 3.682858 CCACAGTTACCTCAATAACCACG 59.317 47.826 0.00 0.00 35.95 4.94
4930 8914 4.648651 ACCACAGTTACCTCAATAACCAC 58.351 43.478 0.00 0.00 35.95 4.16
4931 8915 4.986054 ACCACAGTTACCTCAATAACCA 57.014 40.909 0.00 0.00 35.95 3.67
4932 8916 6.232692 TGTTACCACAGTTACCTCAATAACC 58.767 40.000 0.00 0.00 35.95 2.85
4933 8917 7.733402 TTGTTACCACAGTTACCTCAATAAC 57.267 36.000 0.00 0.00 33.22 1.89
4934 8918 7.392113 CCATTGTTACCACAGTTACCTCAATAA 59.608 37.037 0.00 0.00 33.22 1.40
4935 8919 6.882140 CCATTGTTACCACAGTTACCTCAATA 59.118 38.462 0.00 0.00 33.22 1.90
4936 8920 5.710099 CCATTGTTACCACAGTTACCTCAAT 59.290 40.000 0.00 0.00 33.22 2.57
4937 8921 5.067273 CCATTGTTACCACAGTTACCTCAA 58.933 41.667 0.00 0.00 33.22 3.02
4938 8922 4.647611 CCATTGTTACCACAGTTACCTCA 58.352 43.478 0.00 0.00 33.22 3.86
4939 8923 3.439129 GCCATTGTTACCACAGTTACCTC 59.561 47.826 0.00 0.00 33.22 3.85
4940 8924 3.181438 TGCCATTGTTACCACAGTTACCT 60.181 43.478 0.00 0.00 33.22 3.08
4941 8925 3.150767 TGCCATTGTTACCACAGTTACC 58.849 45.455 0.00 0.00 33.22 2.85
4942 8926 4.069304 TCTGCCATTGTTACCACAGTTAC 58.931 43.478 0.00 0.00 33.22 2.50
4943 8927 4.359434 TCTGCCATTGTTACCACAGTTA 57.641 40.909 0.00 0.00 33.22 2.24
4944 8928 3.222173 TCTGCCATTGTTACCACAGTT 57.778 42.857 0.00 0.00 33.22 3.16
4945 8929 2.884639 GTTCTGCCATTGTTACCACAGT 59.115 45.455 0.00 0.00 33.22 3.55
4946 8930 2.884012 TGTTCTGCCATTGTTACCACAG 59.116 45.455 0.00 0.00 33.22 3.66
4947 8931 2.937519 TGTTCTGCCATTGTTACCACA 58.062 42.857 0.00 0.00 0.00 4.17
4948 8932 3.505680 TCATGTTCTGCCATTGTTACCAC 59.494 43.478 0.00 0.00 0.00 4.16
4949 8933 3.760738 TCATGTTCTGCCATTGTTACCA 58.239 40.909 0.00 0.00 0.00 3.25
4950 8934 4.202050 GGATCATGTTCTGCCATTGTTACC 60.202 45.833 3.86 0.00 0.00 2.85
4951 8935 4.641989 AGGATCATGTTCTGCCATTGTTAC 59.358 41.667 3.86 0.00 0.00 2.50
4952 8936 4.858850 AGGATCATGTTCTGCCATTGTTA 58.141 39.130 3.86 0.00 0.00 2.41
4953 8937 3.705051 AGGATCATGTTCTGCCATTGTT 58.295 40.909 3.86 0.00 0.00 2.83
4954 8938 3.377253 AGGATCATGTTCTGCCATTGT 57.623 42.857 3.86 0.00 0.00 2.71
4955 8939 4.217767 CCATAGGATCATGTTCTGCCATTG 59.782 45.833 3.86 0.00 0.00 2.82
4956 8940 4.141088 ACCATAGGATCATGTTCTGCCATT 60.141 41.667 3.86 0.00 0.00 3.16
4957 8941 3.396946 ACCATAGGATCATGTTCTGCCAT 59.603 43.478 3.86 0.00 0.00 4.40
4958 8942 2.779430 ACCATAGGATCATGTTCTGCCA 59.221 45.455 3.86 0.00 0.00 4.92
4959 8943 3.498774 ACCATAGGATCATGTTCTGCC 57.501 47.619 3.86 0.00 0.00 4.85
4960 8944 4.960938 TGTACCATAGGATCATGTTCTGC 58.039 43.478 3.86 0.00 0.00 4.26
4961 8945 5.463392 CGTTGTACCATAGGATCATGTTCTG 59.537 44.000 3.86 0.00 0.00 3.02
4962 8946 5.362717 TCGTTGTACCATAGGATCATGTTCT 59.637 40.000 3.86 0.00 0.00 3.01
4963 8947 5.597806 TCGTTGTACCATAGGATCATGTTC 58.402 41.667 0.00 0.00 0.00 3.18
4964 8948 5.607939 TCGTTGTACCATAGGATCATGTT 57.392 39.130 0.00 0.00 0.00 2.71
4965 8949 5.808366 ATCGTTGTACCATAGGATCATGT 57.192 39.130 0.00 0.00 0.00 3.21
4966 8950 7.331934 CCTTTATCGTTGTACCATAGGATCATG 59.668 40.741 0.00 0.00 0.00 3.07
4967 8951 7.016268 ACCTTTATCGTTGTACCATAGGATCAT 59.984 37.037 0.00 0.00 0.00 2.45
4968 8952 6.325545 ACCTTTATCGTTGTACCATAGGATCA 59.674 38.462 0.00 0.00 0.00 2.92
4969 8953 6.645415 CACCTTTATCGTTGTACCATAGGATC 59.355 42.308 0.00 0.00 0.00 3.36
4970 8954 6.463897 CCACCTTTATCGTTGTACCATAGGAT 60.464 42.308 0.00 0.00 0.00 3.24
4971 8955 5.163385 CCACCTTTATCGTTGTACCATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
4972 8956 5.054477 CCACCTTTATCGTTGTACCATAGG 58.946 45.833 0.00 0.00 0.00 2.57
4973 8957 5.522460 CACCACCTTTATCGTTGTACCATAG 59.478 44.000 0.00 0.00 0.00 2.23
4974 8958 5.187381 TCACCACCTTTATCGTTGTACCATA 59.813 40.000 0.00 0.00 0.00 2.74
4975 8959 4.020039 TCACCACCTTTATCGTTGTACCAT 60.020 41.667 0.00 0.00 0.00 3.55
4976 8960 3.324268 TCACCACCTTTATCGTTGTACCA 59.676 43.478 0.00 0.00 0.00 3.25
4977 8961 3.929094 TCACCACCTTTATCGTTGTACC 58.071 45.455 0.00 0.00 0.00 3.34
4978 8962 3.370061 GCTCACCACCTTTATCGTTGTAC 59.630 47.826 0.00 0.00 0.00 2.90
4979 8963 3.259876 AGCTCACCACCTTTATCGTTGTA 59.740 43.478 0.00 0.00 0.00 2.41
4980 8964 2.038557 AGCTCACCACCTTTATCGTTGT 59.961 45.455 0.00 0.00 0.00 3.32
4981 8965 2.699954 AGCTCACCACCTTTATCGTTG 58.300 47.619 0.00 0.00 0.00 4.10
4982 8966 3.418684 AAGCTCACCACCTTTATCGTT 57.581 42.857 0.00 0.00 0.00 3.85
4983 8967 3.074412 CAAAGCTCACCACCTTTATCGT 58.926 45.455 0.00 0.00 30.62 3.73
4984 8968 3.334691 TCAAAGCTCACCACCTTTATCG 58.665 45.455 0.00 0.00 30.62 2.92
4985 8969 5.705609 TTTCAAAGCTCACCACCTTTATC 57.294 39.130 0.00 0.00 30.62 1.75
4986 8970 6.670695 AATTTCAAAGCTCACCACCTTTAT 57.329 33.333 0.00 0.00 30.62 1.40
4987 8971 7.589958 TTAATTTCAAAGCTCACCACCTTTA 57.410 32.000 0.00 0.00 30.62 1.85
4988 8972 6.478512 TTAATTTCAAAGCTCACCACCTTT 57.521 33.333 0.00 0.00 0.00 3.11
4989 8973 6.127196 TGTTTAATTTCAAAGCTCACCACCTT 60.127 34.615 0.00 0.00 0.00 3.50
4990 8974 5.362430 TGTTTAATTTCAAAGCTCACCACCT 59.638 36.000 0.00 0.00 0.00 4.00
4991 8975 5.596845 TGTTTAATTTCAAAGCTCACCACC 58.403 37.500 0.00 0.00 0.00 4.61
4992 8976 7.277760 AGTTTGTTTAATTTCAAAGCTCACCAC 59.722 33.333 0.00 0.00 34.83 4.16
4993 8977 7.327214 AGTTTGTTTAATTTCAAAGCTCACCA 58.673 30.769 0.00 0.00 34.83 4.17
4994 8978 7.770801 AGTTTGTTTAATTTCAAAGCTCACC 57.229 32.000 0.00 0.00 34.83 4.02
4995 8979 8.469125 CGTAGTTTGTTTAATTTCAAAGCTCAC 58.531 33.333 0.00 0.00 34.83 3.51
4996 8980 7.166804 GCGTAGTTTGTTTAATTTCAAAGCTCA 59.833 33.333 0.00 0.00 34.83 4.26
4997 8981 7.378728 AGCGTAGTTTGTTTAATTTCAAAGCTC 59.621 33.333 0.00 0.00 34.83 4.09
4998 8982 7.200455 AGCGTAGTTTGTTTAATTTCAAAGCT 58.800 30.769 0.00 0.00 34.83 3.74
4999 8983 7.166804 TGAGCGTAGTTTGTTTAATTTCAAAGC 59.833 33.333 0.00 0.00 34.83 3.51
5000 8984 8.555166 TGAGCGTAGTTTGTTTAATTTCAAAG 57.445 30.769 0.00 0.00 34.83 2.77
5001 8985 8.963130 CATGAGCGTAGTTTGTTTAATTTCAAA 58.037 29.630 0.00 0.00 0.00 2.69
5002 8986 8.346300 TCATGAGCGTAGTTTGTTTAATTTCAA 58.654 29.630 0.00 0.00 0.00 2.69
5003 8987 7.801315 GTCATGAGCGTAGTTTGTTTAATTTCA 59.199 33.333 0.00 0.00 0.00 2.69
5004 8988 8.015658 AGTCATGAGCGTAGTTTGTTTAATTTC 58.984 33.333 0.00 0.00 0.00 2.17
5005 8989 7.871853 AGTCATGAGCGTAGTTTGTTTAATTT 58.128 30.769 0.00 0.00 0.00 1.82
5006 8990 7.435068 AGTCATGAGCGTAGTTTGTTTAATT 57.565 32.000 0.00 0.00 0.00 1.40
5007 8991 7.435068 AAGTCATGAGCGTAGTTTGTTTAAT 57.565 32.000 0.00 0.00 0.00 1.40
5008 8992 6.854496 AAGTCATGAGCGTAGTTTGTTTAA 57.146 33.333 0.00 0.00 0.00 1.52
5009 8993 6.854496 AAAGTCATGAGCGTAGTTTGTTTA 57.146 33.333 0.00 0.00 0.00 2.01
5010 8994 5.751243 AAAGTCATGAGCGTAGTTTGTTT 57.249 34.783 0.00 0.00 0.00 2.83
5011 8995 5.751243 AAAAGTCATGAGCGTAGTTTGTT 57.249 34.783 0.00 0.00 0.00 2.83
5012 8996 5.751243 AAAAAGTCATGAGCGTAGTTTGT 57.249 34.783 0.00 0.00 0.00 2.83
5040 9024 3.010088 CACACTCGTGCGTATTCGA 57.990 52.632 0.00 0.00 36.06 3.71
5049 9033 2.792749 TGTATGATACGCACACTCGTG 58.207 47.619 0.00 0.00 46.56 4.35
5050 9034 3.497297 TTGTATGATACGCACACTCGT 57.503 42.857 0.00 0.00 45.49 4.18
5051 9035 4.833469 TTTTGTATGATACGCACACTCG 57.167 40.909 0.00 0.00 0.00 4.18
5052 9036 5.022021 GCTTTTTGTATGATACGCACACTC 58.978 41.667 0.00 0.00 0.00 3.51
5053 9037 4.454161 TGCTTTTTGTATGATACGCACACT 59.546 37.500 0.00 0.00 0.00 3.55
5054 9038 4.717991 TGCTTTTTGTATGATACGCACAC 58.282 39.130 0.00 0.00 0.00 3.82
5055 9039 5.363979 TTGCTTTTTGTATGATACGCACA 57.636 34.783 2.34 0.00 0.00 4.57
5056 9040 6.580791 TCTTTTGCTTTTTGTATGATACGCAC 59.419 34.615 2.34 0.00 0.00 5.34
5057 9041 6.673106 TCTTTTGCTTTTTGTATGATACGCA 58.327 32.000 0.00 0.00 0.00 5.24
5058 9042 7.561237 TTCTTTTGCTTTTTGTATGATACGC 57.439 32.000 0.00 0.00 0.00 4.42
5062 9046 9.211485 CAGGAATTCTTTTGCTTTTTGTATGAT 57.789 29.630 5.23 0.00 0.00 2.45
5063 9047 7.656948 CCAGGAATTCTTTTGCTTTTTGTATGA 59.343 33.333 5.23 0.00 0.00 2.15
5064 9048 7.442062 ACCAGGAATTCTTTTGCTTTTTGTATG 59.558 33.333 5.23 0.00 0.00 2.39
5065 9049 7.442062 CACCAGGAATTCTTTTGCTTTTTGTAT 59.558 33.333 5.23 0.00 0.00 2.29
5066 9050 6.760770 CACCAGGAATTCTTTTGCTTTTTGTA 59.239 34.615 5.23 0.00 0.00 2.41
5067 9051 5.585844 CACCAGGAATTCTTTTGCTTTTTGT 59.414 36.000 5.23 0.00 0.00 2.83
5068 9052 5.816777 TCACCAGGAATTCTTTTGCTTTTTG 59.183 36.000 5.23 0.00 0.00 2.44
5069 9053 5.988287 TCACCAGGAATTCTTTTGCTTTTT 58.012 33.333 5.23 0.00 0.00 1.94
5070 9054 5.612725 TCACCAGGAATTCTTTTGCTTTT 57.387 34.783 5.23 0.00 0.00 2.27
5071 9055 5.612725 TTCACCAGGAATTCTTTTGCTTT 57.387 34.783 5.23 0.00 0.00 3.51
5072 9056 5.612725 TTTCACCAGGAATTCTTTTGCTT 57.387 34.783 5.23 0.00 34.91 3.91
5073 9057 5.813513 ATTTCACCAGGAATTCTTTTGCT 57.186 34.783 5.23 0.00 34.91 3.91
5074 9058 7.961325 TTAATTTCACCAGGAATTCTTTTGC 57.039 32.000 5.23 0.00 34.91 3.68
5075 9059 9.933723 AGATTAATTTCACCAGGAATTCTTTTG 57.066 29.630 5.23 2.20 34.91 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.