AutoCloner

Multiple sequence alignment - TraesCS6B01G443400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G443400	chr6B	100.000	3366	0	0	1	3366	706530671	706527306	0.000000e+00	6216.0
1	TraesCS6B01G443400	chr6B	97.013	1674	35	7	1	1673	706445580	706443921	0.000000e+00	2800.0
2	TraesCS6B01G443400	chr6B	96.007	1678	52	5	1690	3366	706443937	706442274	0.000000e+00	2713.0
3	TraesCS6B01G443400	chr6B	88.705	1691	155	22	1690	3360	705758264	705756590	0.000000e+00	2032.0
4	TraesCS6B01G443400	chr6B	88.896	1675	152	18	1692	3346	706352358	706350698	0.000000e+00	2032.0
5	TraesCS6B01G443400	chr6B	88.776	1675	155	17	1692	3346	706409344	706407683	0.000000e+00	2021.0
6	TraesCS6B01G443400	chr6B	88.277	1689	157	23	1692	3360	705784316	705782649	0.000000e+00	1984.0
7	TraesCS6B01G443400	chr6B	88.444	450	38	7	39	485	705643500	705643062	7.370000e-147	531.0
8	TraesCS6B01G443400	chr6B	91.358	324	28	0	38	361	705801750	705801427	9.880000e-121	444.0
9	TraesCS6B01G443400	chr6B	88.378	370	36	3	29	392	705503053	705502685	4.600000e-119	438.0
10	TraesCS6B01G443400	chr6B	89.053	338	36	1	29	366	705919236	705918900	5.990000e-113	418.0
11	TraesCS6B01G443400	chr6B	87.989	358	35	4	54	406	705939936	705939582	2.150000e-112	416.0
12	TraesCS6B01G443400	chr6B	87.675	357	40	2	39	392	705949626	705949271	2.790000e-111	412.0
13	TraesCS6B01G443400	chr6B	90.083	242	16	5	876	1112	706112428	706112190	1.350000e-79	307.0
14	TraesCS6B01G443400	chr6B	89.069	247	22	3	876	1118	705758712	705758467	6.290000e-78	302.0
15	TraesCS6B01G443400	chr6B	88.688	221	18	3	876	1090	706352835	706352616	2.970000e-66	263.0
16	TraesCS6B01G443400	chr6B	88.688	221	18	3	876	1090	706409821	706409602	2.970000e-66	263.0
17	TraesCS6B01G443400	chr6B	90.449	178	17	0	1251	1428	706409566	706409389	6.470000e-58	235.0
18	TraesCS6B01G443400	chr6B	89.888	178	18	0	1251	1428	706352580	706352403	3.010000e-56	230.0
19	TraesCS6B01G443400	chr6B	100.000	98	0	0	3778	3875	706526894	706526797	8.550000e-42	182.0
20	TraesCS6B01G443400	chr6B	92.683	123	9	0	1306	1428	705784484	705784362	1.110000e-40	178.0
21	TraesCS6B01G443400	chr6B	96.552	87	2	1	3778	3863	706442239	706442153	4.040000e-30	143.0
22	TraesCS6B01G443400	chr6B	95.238	42	1	1	673	714	705760041	705760001	8.990000e-07	65.8
23	TraesCS6B01G443400	chr6D	96.002	1676	65	2	1692	3366	463079949	463078275	0.000000e+00	2723.0
24	TraesCS6B01G443400	chr6D	89.499	1676	145	18	1692	3349	463073694	463072032	0.000000e+00	2091.0
25	TraesCS6B01G443400	chr6D	94.017	351	15	2	765	1115	463091881	463091537	9.540000e-146	527.0
26	TraesCS6B01G443400	chr6D	95.486	288	13	0	450	737	463092164	463091877	9.810000e-126	460.0
27	TraesCS6B01G443400	chr6D	93.103	290	17	2	1137	1425	463091196	463090909	4.630000e-114	422.0
28	TraesCS6B01G443400	chr6D	89.412	255	12	4	1423	1673	463080178	463079935	1.350000e-79	307.0
29	TraesCS6B01G443400	chr6D	89.091	220	18	2	876	1090	463074170	463073952	6.380000e-68	268.0
30	TraesCS6B01G443400	chr6D	88.764	178	20	0	1251	1428	463073916	463073739	6.520000e-53	219.0
31	TraesCS6B01G443400	chr6D	84.559	136	14	6	1119	1251	224773026	224772895	1.130000e-25	128.0
32	TraesCS6B01G443400	chr6A	93.862	1678	100	1	1692	3366	609821430	609819753	0.000000e+00	2525.0
33	TraesCS6B01G443400	chr6A	90.903	1429	111	9	1690	3103	609815176	609813752	0.000000e+00	1901.0
34	TraesCS6B01G443400	chr6A	87.736	1166	58	31	1	1134	609822679	609821567	0.000000e+00	1282.0
35	TraesCS6B01G443400	chr6A	88.889	360	36	2	36	392	609669036	609668678	1.280000e-119	440.0
36	TraesCS6B01G443400	chr6A	88.108	370	37	3	29	392	609573598	609573230	2.140000e-117	433.0
37	TraesCS6B01G443400	chr6A	91.064	235	19	2	878	1112	609816247	609816015	2.250000e-82	316.0
38	TraesCS6B01G443400	chr6A	94.186	86	5	0	3778	3863	609819718	609819633	8.740000e-27	132.0
39	TraesCS6B01G443400	chr4B	89.617	183	18	1	1430	1611	58065507	58065325	8.370000e-57	231.0
40	TraesCS6B01G443400	chr4B	86.179	123	15	2	1130	1251	10396512	10396633	8.740000e-27	132.0
41	TraesCS6B01G443400	chr1D	88.333	180	20	1	1430	1608	460436463	460436642	8.430000e-52	215.0
42	TraesCS6B01G443400	chr1D	86.264	182	23	2	1430	1610	69525125	69524945	3.050000e-46	196.0
43	TraesCS6B01G443400	chr2D	91.304	115	10	0	1137	1251	15520398	15520512	1.440000e-34	158.0
44	TraesCS6B01G443400	chr2D	100.000	28	0	0	763	790	458736093	458736120	7.000000e-03	52.8
45	TraesCS6B01G443400	chr1B	88.148	135	12	4	1119	1251	458013792	458013924	1.440000e-34	158.0
46	TraesCS6B01G443400	chr5A	91.743	109	9	0	1142	1250	616354941	616354833	6.710000e-33	152.0
47	TraesCS6B01G443400	chr7D	89.565	115	12	0	1137	1251	115138376	115138490	3.120000e-31	147.0
48	TraesCS6B01G443400	chr3D	86.885	122	12	4	1138	1259	514684164	514684047	2.430000e-27	134.0
49	TraesCS6B01G443400	chr2B	95.385	65	2	1	1545	1609	470524113	470524176	6.850000e-18	102.0
50	TraesCS6B01G443400	chr2B	100.000	34	0	0	1564	1597	17596634	17596667	3.230000e-06	63.9
51	TraesCS6B01G443400	chr2B	90.000	40	4	0	1571	1610	177600452	177600413	7.000000e-03	52.8
52	TraesCS6B01G443400	chr2B	100.000	28	0	0	763	790	539706583	539706610	7.000000e-03	52.8
53	TraesCS6B01G443400	chr2A	97.561	41	1	0	1568	1608	777622221	777622261	1.930000e-08	71.3
54	TraesCS6B01G443400	chr2A	90.244	41	4	0	1570	1610	130799658	130799618	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G443400	chr6B	706526797	706530671	3874	True	3199.000000	6216	100.000000	1	3875	2	chr6B.!!$R13	3874
1	TraesCS6B01G443400	chr6B	706442153	706445580	3427	True	1885.333333	2800	96.524000	1	3863	3	chr6B.!!$R12	3862
2	TraesCS6B01G443400	chr6B	705782649	705784484	1835	True	1081.000000	1984	90.480000	1306	3360	2	chr6B.!!$R9	2054
3	TraesCS6B01G443400	chr6B	706350698	706352835	2137	True	841.666667	2032	89.157333	876	3346	3	chr6B.!!$R10	2470
4	TraesCS6B01G443400	chr6B	706407683	706409821	2138	True	839.666667	2021	89.304333	876	3346	3	chr6B.!!$R11	2470
5	TraesCS6B01G443400	chr6B	705756590	705760041	3451	True	799.933333	2032	91.004000	673	3360	3	chr6B.!!$R8	2687
6	TraesCS6B01G443400	chr6D	463078275	463080178	1903	True	1515.000000	2723	92.707000	1423	3366	2	chr6D.!!$R3	1943
7	TraesCS6B01G443400	chr6D	463072032	463074170	2138	True	859.333333	2091	89.118000	876	3349	3	chr6D.!!$R2	2473
8	TraesCS6B01G443400	chr6D	463090909	463092164	1255	True	469.666667	527	94.202000	450	1425	3	chr6D.!!$R4	975
9	TraesCS6B01G443400	chr6A	609813752	609822679	8927	True	1231.200000	2525	91.550200	1	3863	5	chr6A.!!$R3	3862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
57	58	0.740868	CATGTCGATGTTGCCGAGGT	60.741	55.0	0.0	0.0	36.66	3.85	F
1824	9561	0.178990	GGCTCGCCCCCATCTTTATT	60.179	55.0	0.0	0.0	0.00	1.40	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1867	9604	1.008194	CGGTCGTCGAGGAACAACA	60.008	57.895	21.87	0.0	42.43	3.33	R
3255	11022	0.540365	ACAATGGGAGTGGTTGGCAG	60.540	55.000	0.00	0.0	0.00	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	3.187700	GCTCATGTTCGGGTAGTTGTAG	58.812	50.000	0.00	0.00	0.00	2.74
34	35	4.142315	GCTCATGTTCGGGTAGTTGTAGTA	60.142	45.833	0.00	0.00	0.00	1.82
52	53	1.933853	GTAGTCCATGTCGATGTTGCC	59.066	52.381	0.00	0.00	0.00	4.52
57	58	0.740868	CATGTCGATGTTGCCGAGGT	60.741	55.000	0.00	0.00	36.66	3.85
251	252	1.761174	GGAAGTGGACCCTGCTTGA	59.239	57.895	0.00	0.00	0.00	3.02
298	299	3.491652	GCTTCGGACAAGGAGCGC	61.492	66.667	0.00	0.00	0.00	5.92
300	301	1.667830	CTTCGGACAAGGAGCGCAA	60.668	57.895	11.47	0.00	0.00	4.85
527	563	7.339466	AGTGCCTTCTTAAAAGTCTTCTTTGAA	59.661	33.333	0.00	0.00	42.26	2.69
581	617	6.402550	CCATTCCTCAAGTTTGTTGATCGTAG	60.403	42.308	0.00	0.00	0.00	3.51
811	2091	5.812642	ACAGCTACACTTTACTGATATGCAC	59.187	40.000	0.00	0.00	34.25	4.57
820	2100	0.934901	CTGATATGCACGGACGGACG	60.935	60.000	0.00	0.00	40.31	4.79
861	2141	2.125202	ATCGTCCGCGCATCATCGTA	62.125	55.000	8.75	0.00	38.14	3.43
960	2246	1.486310	ACTCAACTCACAGGCTTCACA	59.514	47.619	0.00	0.00	0.00	3.58
977	2263	1.037493	ACAGCTGACACACCTCGTAA	58.963	50.000	23.35	0.00	0.00	3.18
1058	2345	3.419154	AAGGTGCCCTAGCTACCTT	57.581	52.632	11.40	11.40	46.58	3.50
1135	2425	3.880490	TCCATGTGTGTTTTCCTGTGTAC	59.120	43.478	0.00	0.00	0.00	2.90
1166	2775	2.993899	GCTGTGTGCATCTTAGTTACGT	59.006	45.455	0.00	0.00	42.31	3.57
1428	9151	5.870706	TGGTATTGTTCATGACCTACACAA	58.129	37.500	11.29	11.29	32.87	3.33
1652	9384	4.909696	TTCGCTTTGAAAACAAGATGGA	57.090	36.364	0.00	0.00	32.37	3.41
1673	9405	5.830900	GATACAGGCTTGTGTATCGATTC	57.169	43.478	12.40	0.00	45.74	2.52
1674	9406	2.906354	ACAGGCTTGTGTATCGATTCC	58.094	47.619	1.71	0.00	35.83	3.01
1675	9407	2.501723	ACAGGCTTGTGTATCGATTCCT	59.498	45.455	1.71	0.00	35.83	3.36
1676	9408	3.055094	ACAGGCTTGTGTATCGATTCCTT	60.055	43.478	1.71	0.00	35.83	3.36
1677	9409	3.941483	CAGGCTTGTGTATCGATTCCTTT	59.059	43.478	1.71	0.00	0.00	3.11
1678	9410	4.396166	CAGGCTTGTGTATCGATTCCTTTT	59.604	41.667	1.71	0.00	0.00	2.27
1679	9411	4.636206	AGGCTTGTGTATCGATTCCTTTTC	59.364	41.667	1.71	0.00	0.00	2.29
1680	9412	4.636206	GGCTTGTGTATCGATTCCTTTTCT	59.364	41.667	1.71	0.00	0.00	2.52
1681	9413	5.815740	GGCTTGTGTATCGATTCCTTTTCTA	59.184	40.000	1.71	0.00	0.00	2.10
1682	9414	6.315393	GGCTTGTGTATCGATTCCTTTTCTAA	59.685	38.462	1.71	0.00	0.00	2.10
1683	9415	7.148306	GGCTTGTGTATCGATTCCTTTTCTAAA	60.148	37.037	1.71	0.00	0.00	1.85
1684	9416	8.234546	GCTTGTGTATCGATTCCTTTTCTAAAA	58.765	33.333	1.71	0.00	0.00	1.52
1686	9418	9.887406	TTGTGTATCGATTCCTTTTCTAAAAAC	57.113	29.630	1.71	0.00	0.00	2.43
1687	9419	9.058174	TGTGTATCGATTCCTTTTCTAAAAACA	57.942	29.630	1.71	0.00	0.00	2.83
1688	9420	9.887406	GTGTATCGATTCCTTTTCTAAAAACAA	57.113	29.630	1.71	0.00	0.00	2.83
1692	9424	6.921307	TCGATTCCTTTTCTAAAAACAAAGGC	59.079	34.615	5.22	0.00	44.36	4.35
1693	9425	6.923508	CGATTCCTTTTCTAAAAACAAAGGCT	59.076	34.615	5.22	0.00	44.36	4.58
1694	9426	7.438160	CGATTCCTTTTCTAAAAACAAAGGCTT	59.562	33.333	0.00	0.00	44.36	4.35
1695	9427	7.841915	TTCCTTTTCTAAAAACAAAGGCTTG	57.158	32.000	0.00	0.00	44.36	4.01
1697	9429	6.816140	TCCTTTTCTAAAAACAAAGGCTTGTG	59.184	34.615	0.00	4.22	45.25	3.33
1698	9430	6.593770	CCTTTTCTAAAAACAAAGGCTTGTGT	59.406	34.615	0.00	4.89	45.25	3.72
1699	9431	7.762159	CCTTTTCTAAAAACAAAGGCTTGTGTA	59.238	33.333	0.00	0.00	45.25	2.90
1700	9432	9.313118	CTTTTCTAAAAACAAAGGCTTGTGTAT	57.687	29.630	0.00	0.00	45.25	2.29
1701	9433	8.865590	TTTCTAAAAACAAAGGCTTGTGTATC	57.134	30.769	0.00	0.00	45.25	2.24
1702	9434	6.664515	TCTAAAAACAAAGGCTTGTGTATCG	58.335	36.000	0.00	0.00	45.25	2.92
1709	9441	6.112734	ACAAAGGCTTGTGTATCGATTGATA	58.887	36.000	1.71	0.00	44.28	2.15
1824	9561	0.178990	GGCTCGCCCCCATCTTTATT	60.179	55.000	0.00	0.00	0.00	1.40
1839	9576	7.924412	CCCATCTTTATTTTACTGTCGCTACTA	59.076	37.037	0.00	0.00	0.00	1.82
1867	9604	1.069823	CTTATGGAGTCGGCAGCATCT	59.930	52.381	0.00	0.00	0.00	2.90
1957	9697	5.597806	ACATCACTAACGACTCAAGACAAA	58.402	37.500	0.00	0.00	0.00	2.83
1958	9698	6.223852	ACATCACTAACGACTCAAGACAAAT	58.776	36.000	0.00	0.00	0.00	2.32
2299	10040	5.201243	GTGAAATTCCCCTTGCTATAGGTT	58.799	41.667	1.04	0.00	33.17	3.50
2346	10087	5.819991	TGGCTTTCCTCAAATAATCTCACT	58.180	37.500	0.00	0.00	0.00	3.41
2448	10189	4.402616	TCCTGGTGAGATGGGAATTTTT	57.597	40.909	0.00	0.00	0.00	1.94
2520	10261	7.342026	GGAATCCCAGAAACCTTGTACAAATAT	59.658	37.037	10.03	0.00	0.00	1.28
2656	10397	5.397360	ACAATTTTGAAGGTCATCTCCCTT	58.603	37.500	0.00	0.00	44.98	3.95
2739	10485	2.693074	TCAAGTTCCAGGTTCTTTTGGC	59.307	45.455	0.00	0.00	34.38	4.52
3255	11022	1.102978	AATAAACCATGCTGGCGGAC	58.897	50.000	0.00	0.00	42.67	4.79
3836	11606	7.961326	AAGCTCAATACCCAAAAGTCATTAT	57.039	32.000	0.00	0.00	0.00	1.28
3837	11607	7.961326	AGCTCAATACCCAAAAGTCATTATT	57.039	32.000	0.00	0.00	0.00	1.40
3838	11608	7.775120	AGCTCAATACCCAAAAGTCATTATTG	58.225	34.615	0.00	0.00	0.00	1.90
3863	11634	2.598394	GCAAAGGCTGCCCAGACA	60.598	61.111	16.57	0.00	46.13	3.41
3864	11635	2.633509	GCAAAGGCTGCCCAGACAG	61.634	63.158	16.57	0.85	46.13	3.51
3865	11636	1.975407	CAAAGGCTGCCCAGACAGG	60.975	63.158	16.57	0.00	39.50	4.00

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	3.758554	TGGACTACTACAACTACCCGAAC	59.241	47.826	0.00	0.00	0.00	3.95
32	33	1.933853	GGCAACATCGACATGGACTAC	59.066	52.381	0.00	0.00	33.82	2.73
34	35	0.740868	CGGCAACATCGACATGGACT	60.741	55.000	0.00	0.00	33.82	3.85
52	53	2.662006	TCTCATCAAGCTCAACCTCG	57.338	50.000	0.00	0.00	0.00	4.63
57	58	1.409241	GGGCCATCTCATCAAGCTCAA	60.409	52.381	4.39	0.00	0.00	3.02
251	252	4.603131	TGCTCCTTTGCCTATTGATCTTT	58.397	39.130	0.00	0.00	0.00	2.52
298	299	3.809832	CCCGACCAATATGACTAAGCTTG	59.190	47.826	9.86	1.57	0.00	4.01
300	301	3.305720	TCCCGACCAATATGACTAAGCT	58.694	45.455	0.00	0.00	0.00	3.74
527	563	2.105006	AATGCGAGCATGACTTGTCT	57.895	45.000	11.64	0.00	36.68	3.41
594	630	7.166473	CGGCAGCATGTAGAAAAAGAATTTATC	59.834	37.037	0.00	0.00	35.90	1.75
811	2091	1.154338	GCGTATATCCGTCCGTCCG	60.154	63.158	0.00	0.00	0.00	4.79
861	2141	3.278668	AGAAAGAGTGCTGCTATGCAT	57.721	42.857	3.79	3.79	45.23	3.96
960	2246	0.317479	GGTTACGAGGTGTGTCAGCT	59.683	55.000	1.03	1.03	45.28	4.24
1058	2345	2.732289	GCACCTTTGCCCAAGAGAA	58.268	52.632	0.00	0.00	43.66	2.87
1135	2425	2.631428	CACACAGCCAACCGAACG	59.369	61.111	0.00	0.00	0.00	3.95
1166	2775	4.082523	GCACACAGCCGGCCTCTA	62.083	66.667	26.15	0.00	37.23	2.43
1634	9358	6.095377	CCTGTATCCATCTTGTTTTCAAAGC	58.905	40.000	0.00	0.00	39.47	3.51
1652	9384	4.345257	AGGAATCGATACACAAGCCTGTAT	59.655	41.667	0.00	0.00	39.59	2.29
1673	9405	6.593770	ACACAAGCCTTTGTTTTTAGAAAAGG	59.406	34.615	8.69	8.69	45.01	3.11
1674	9406	7.595311	ACACAAGCCTTTGTTTTTAGAAAAG	57.405	32.000	0.00	0.00	45.01	2.27
1675	9407	9.308318	GATACACAAGCCTTTGTTTTTAGAAAA	57.692	29.630	0.00	0.00	45.01	2.29
1676	9408	7.646130	CGATACACAAGCCTTTGTTTTTAGAAA	59.354	33.333	0.00	0.00	45.01	2.52
1677	9409	7.012515	TCGATACACAAGCCTTTGTTTTTAGAA	59.987	33.333	0.00	0.00	45.01	2.10
1678	9410	6.483974	TCGATACACAAGCCTTTGTTTTTAGA	59.516	34.615	0.00	0.00	45.01	2.10
1679	9411	6.664515	TCGATACACAAGCCTTTGTTTTTAG	58.335	36.000	0.00	0.00	45.01	1.85
1680	9412	6.621316	TCGATACACAAGCCTTTGTTTTTA	57.379	33.333	0.00	0.00	45.01	1.52
1681	9413	5.508200	TCGATACACAAGCCTTTGTTTTT	57.492	34.783	0.00	0.00	45.01	1.94
1682	9414	5.705609	ATCGATACACAAGCCTTTGTTTT	57.294	34.783	0.00	0.00	45.01	2.43
1683	9415	5.240623	TCAATCGATACACAAGCCTTTGTTT	59.759	36.000	0.00	0.00	45.01	2.83
1684	9416	4.759693	TCAATCGATACACAAGCCTTTGTT	59.240	37.500	0.00	0.00	45.01	2.83
1685	9417	6.112734	TATCAATCGATACACAAGCCTTTGT	58.887	36.000	0.00	0.00	39.33	2.83
1686	9418	4.944962	TCAATCGATACACAAGCCTTTG	57.055	40.909	0.00	0.00	40.24	2.77
1698	9430	6.578023	TGGTCATTGTGTGTATCAATCGATA	58.422	36.000	0.00	0.00	33.92	2.92
1699	9431	5.427378	TGGTCATTGTGTGTATCAATCGAT	58.573	37.500	0.00	0.00	33.92	3.59
1700	9432	4.826556	TGGTCATTGTGTGTATCAATCGA	58.173	39.130	0.00	0.00	33.92	3.59
1701	9433	5.544136	TTGGTCATTGTGTGTATCAATCG	57.456	39.130	0.00	0.00	33.92	3.34
1702	9434	7.325660	AGATTGGTCATTGTGTGTATCAATC	57.674	36.000	0.00	0.00	38.38	2.67
1709	9441	2.957680	TGCAAGATTGGTCATTGTGTGT	59.042	40.909	0.00	0.00	0.00	3.72
1824	9561	7.154435	AGAAATCAGTAGTAGCGACAGTAAA	57.846	36.000	0.00	0.00	0.00	2.01
1839	9576	3.197766	TGCCGACTCCATAAGAAATCAGT	59.802	43.478	0.00	0.00	0.00	3.41
1867	9604	1.008194	CGGTCGTCGAGGAACAACA	60.008	57.895	21.87	0.00	42.43	3.33
1957	9697	2.092968	TGGCGTGCCAAGATCTTAAGAT	60.093	45.455	17.96	17.96	44.12	2.40
1958	9698	1.277842	TGGCGTGCCAAGATCTTAAGA	59.722	47.619	11.96	7.82	44.12	2.10
2299	10040	4.307259	ACTTCCCTTAGATTGGATAGGCA	58.693	43.478	0.00	0.00	0.00	4.75
2346	10087	0.541764	GGCTTGGTGGGATTGTTCCA	60.542	55.000	0.00	0.00	44.60	3.53
2375	10116	1.392853	CGATGTCTTCAAGCTGACTGC	59.607	52.381	3.85	0.00	43.29	4.40
2448	10189	5.826643	AGGCCTAAATAAACAACAGATGGA	58.173	37.500	1.29	0.00	0.00	3.41
2455	10196	4.525100	TCCACCAAGGCCTAAATAAACAAC	59.475	41.667	5.16	0.00	37.29	3.32
2656	10397	5.590259	GCCTTGAAATATTGCCTAGTGAAGA	59.410	40.000	0.00	0.00	0.00	2.87
2739	10485	6.992063	AGGTATTCTAACAGTGCAAGATTG	57.008	37.500	0.00	0.00	0.00	2.67
3255	11022	0.540365	ACAATGGGAGTGGTTGGCAG	60.540	55.000	0.00	0.00	0.00	4.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.