Multiple sequence alignment - TraesCS6B01G440100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G440100 chr6B 100.000 3473 0 0 1 3473 705317502 705314030 0.000000e+00 6414.0
1 TraesCS6B01G440100 chr6B 87.509 1361 162 4 1187 2543 705182947 705181591 0.000000e+00 1565.0
2 TraesCS6B01G440100 chr6B 87.941 340 31 8 866 1201 705183960 705183627 3.250000e-105 392.0
3 TraesCS6B01G440100 chr6B 96.045 177 6 1 3224 3399 114057035 114057211 1.580000e-73 287.0
4 TraesCS6B01G440100 chr6B 97.297 148 4 0 2637 2784 699125351 699125498 5.750000e-63 252.0
5 TraesCS6B01G440100 chr6B 90.099 101 8 2 272 372 705184770 705184672 2.810000e-26 130.0
6 TraesCS6B01G440100 chr6A 97.703 1654 38 0 981 2634 609427775 609426122 0.000000e+00 2844.0
7 TraesCS6B01G440100 chr6A 87.542 1766 192 25 870 2619 609403419 609401666 0.000000e+00 2017.0
8 TraesCS6B01G440100 chr6A 92.345 614 41 4 1 610 609429250 609428639 0.000000e+00 869.0
9 TraesCS6B01G440100 chr6A 96.687 332 7 1 2785 3116 609426137 609425810 1.820000e-152 549.0
10 TraesCS6B01G440100 chr6A 98.171 164 3 0 603 766 609428492 609428329 1.580000e-73 287.0
11 TraesCS6B01G440100 chr6A 96.491 171 6 0 3226 3396 430340398 430340568 2.040000e-72 283.0
12 TraesCS6B01G440100 chr6A 98.230 113 2 0 3115 3227 609425576 609425464 7.600000e-47 198.0
13 TraesCS6B01G440100 chr6A 76.432 454 51 31 306 740 609404080 609403664 9.840000e-46 195.0
14 TraesCS6B01G440100 chr6A 100.000 89 0 0 3385 3473 609425471 609425383 7.710000e-37 165.0
15 TraesCS6B01G440100 chr6A 85.816 141 2 4 801 923 609428213 609428073 2.170000e-27 134.0
16 TraesCS6B01G440100 chr6A 96.154 52 2 0 1 52 563741807 563741858 6.180000e-13 86.1
17 TraesCS6B01G440100 chr6D 97.589 1659 40 0 976 2634 462614925 462613267 0.000000e+00 2843.0
18 TraesCS6B01G440100 chr6D 88.652 1639 176 7 956 2593 462555589 462553960 0.000000e+00 1988.0
19 TraesCS6B01G440100 chr6D 95.593 953 16 6 1 928 462616275 462615324 0.000000e+00 1504.0
20 TraesCS6B01G440100 chr6D 91.944 360 22 4 2785 3143 462613282 462612929 6.690000e-137 497.0
21 TraesCS6B01G440100 chrUn 100.000 428 0 0 1317 1744 476451866 476451439 0.000000e+00 791.0
22 TraesCS6B01G440100 chrUn 97.605 167 4 0 3223 3389 81565820 81565654 1.580000e-73 287.0
23 TraesCS6B01G440100 chrUn 96.491 171 6 0 3219 3389 75274358 75274528 2.040000e-72 283.0
24 TraesCS6B01G440100 chr3D 84.681 705 80 22 870 1556 144479174 144478480 0.000000e+00 678.0
25 TraesCS6B01G440100 chr5B 97.076 171 5 0 3222 3392 656461943 656461773 4.390000e-74 289.0
26 TraesCS6B01G440100 chr5B 93.478 184 11 1 3206 3389 320378862 320379044 4.420000e-69 272.0
27 TraesCS6B01G440100 chr5B 97.333 150 4 0 2637 2786 48316128 48316277 4.450000e-64 255.0
28 TraesCS6B01G440100 chr1A 96.532 173 4 2 3226 3398 32093427 32093597 5.670000e-73 285.0
29 TraesCS6B01G440100 chr1A 98.667 150 2 0 2637 2786 516162879 516163028 2.060000e-67 267.0
30 TraesCS6B01G440100 chr1A 96.203 158 4 1 2637 2792 341230874 341230717 1.240000e-64 257.0
31 TraesCS6B01G440100 chr7A 95.930 172 7 0 3222 3393 143080637 143080808 2.640000e-71 279.0
32 TraesCS6B01G440100 chr7A 80.172 116 23 0 1128 1243 495536861 495536976 1.720000e-13 87.9
33 TraesCS6B01G440100 chr7A 86.154 65 2 2 3416 3473 519793 519729 2.890000e-06 63.9
34 TraesCS6B01G440100 chr4A 93.514 185 9 3 3226 3409 570473211 570473029 4.420000e-69 272.0
35 TraesCS6B01G440100 chr1B 96.774 155 5 0 2637 2791 49198849 49199003 3.440000e-65 259.0
36 TraesCS6B01G440100 chr1B 97.333 150 4 0 2637 2786 60234826 60234677 4.450000e-64 255.0
37 TraesCS6B01G440100 chr1B 96.364 55 2 0 1 55 497472900 497472954 1.330000e-14 91.6
38 TraesCS6B01G440100 chr2A 95.625 160 7 0 2637 2796 333765996 333765837 1.240000e-64 257.0
39 TraesCS6B01G440100 chr2A 88.235 68 7 1 1 68 205010783 205010849 2.870000e-11 80.5
40 TraesCS6B01G440100 chr2A 96.875 32 1 0 1837 1868 8631787 8631818 2.000000e-03 54.7
41 TraesCS6B01G440100 chr2B 94.578 166 7 2 2637 2800 46597114 46596949 4.450000e-64 255.0
42 TraesCS6B01G440100 chr2B 96.364 55 2 0 1 55 620274914 620274860 1.330000e-14 91.6
43 TraesCS6B01G440100 chr2B 94.545 55 3 0 1 55 5060755 5060701 6.180000e-13 86.1
44 TraesCS6B01G440100 chr7B 93.491 169 8 3 2637 2805 35248021 35248186 7.440000e-62 248.0
45 TraesCS6B01G440100 chr3A 96.364 55 2 0 1 55 555409505 555409451 1.330000e-14 91.6
46 TraesCS6B01G440100 chr3A 93.750 48 1 2 3172 3217 739762013 739762060 1.730000e-08 71.3
47 TraesCS6B01G440100 chr3B 92.857 56 4 0 1 56 150952023 150952078 7.990000e-12 82.4
48 TraesCS6B01G440100 chr3B 97.368 38 1 0 3428 3465 817040766 817040803 8.050000e-07 65.8
49 TraesCS6B01G440100 chr2D 97.059 34 1 0 1835 1868 9310623 9310656 1.350000e-04 58.4
50 TraesCS6B01G440100 chr2D 100.000 28 0 0 1841 1868 9664413 9664386 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G440100 chr6B 705314030 705317502 3472 True 6414.000000 6414 100.000000 1 3473 1 chr6B.!!$R1 3472
1 TraesCS6B01G440100 chr6B 705181591 705184770 3179 True 695.666667 1565 88.516333 272 2543 3 chr6B.!!$R2 2271
2 TraesCS6B01G440100 chr6A 609401666 609404080 2414 True 1106.000000 2017 81.987000 306 2619 2 chr6A.!!$R1 2313
3 TraesCS6B01G440100 chr6A 609425383 609429250 3867 True 720.857143 2844 95.564571 1 3473 7 chr6A.!!$R2 3472
4 TraesCS6B01G440100 chr6D 462553960 462555589 1629 True 1988.000000 1988 88.652000 956 2593 1 chr6D.!!$R1 1637
5 TraesCS6B01G440100 chr6D 462612929 462616275 3346 True 1614.666667 2843 95.042000 1 3143 3 chr6D.!!$R2 3142
6 TraesCS6B01G440100 chr3D 144478480 144479174 694 True 678.000000 678 84.681000 870 1556 1 chr3D.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 275 0.604073 TTCTCGATTGGTGCGTGGTA 59.396 50.0 0.0 0.0 0.0 3.25 F
974 1406 1.290203 CTCTCCACACACACACACAC 58.710 55.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2131 3605 0.976641 ACCGAGAGATTGTCTGCCAA 59.023 50.0 0.0 0.0 34.71 4.52 R
2670 4146 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.0 0.0 0.0 38.20 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 160 1.067495 CCGCTTCTTTCGTCTCTCCTT 60.067 52.381 0.00 0.00 0.00 3.36
271 275 0.604073 TTCTCGATTGGTGCGTGGTA 59.396 50.000 0.00 0.00 0.00 3.25
338 342 4.201724 GCTTCTCTGCTACGTTTAACATGG 60.202 45.833 0.00 0.00 0.00 3.66
526 532 9.887629 AGCTCAGATGTTATAATATCTCCAATG 57.112 33.333 18.77 10.56 35.08 2.82
766 1052 6.618287 TGTCAATTTCTTACACCAGTCAAG 57.382 37.500 0.00 0.00 0.00 3.02
767 1053 6.119536 TGTCAATTTCTTACACCAGTCAAGT 58.880 36.000 0.00 0.00 0.00 3.16
938 1359 2.988010 TGCGGAGTTGCAAGATCTAT 57.012 45.000 0.00 0.00 43.02 1.98
941 1362 4.765273 TGCGGAGTTGCAAGATCTATTTA 58.235 39.130 0.00 0.00 43.02 1.40
942 1363 4.811024 TGCGGAGTTGCAAGATCTATTTAG 59.189 41.667 0.00 0.00 43.02 1.85
943 1364 4.811557 GCGGAGTTGCAAGATCTATTTAGT 59.188 41.667 0.00 0.00 34.15 2.24
944 1365 5.050702 GCGGAGTTGCAAGATCTATTTAGTC 60.051 44.000 0.00 0.00 34.15 2.59
945 1366 5.463724 CGGAGTTGCAAGATCTATTTAGTCC 59.536 44.000 0.00 3.89 0.00 3.85
947 1368 5.685728 AGTTGCAAGATCTATTTAGTCCCC 58.314 41.667 0.00 0.00 0.00 4.81
974 1406 1.290203 CTCTCCACACACACACACAC 58.710 55.000 0.00 0.00 0.00 3.82
2073 3547 1.953559 ATGTGTGCGCCGATATCTTT 58.046 45.000 4.18 0.00 0.00 2.52
2131 3605 7.881775 ATCCTCAACAAGTACAGAAACTTTT 57.118 32.000 0.00 0.00 37.61 2.27
2478 3952 7.591165 AGCGCATACGATTTAGTTAGAGAATA 58.409 34.615 11.47 0.00 43.93 1.75
2514 3988 9.234827 TCATTAGATGAAGTTGACATGACAATT 57.765 29.630 13.54 6.97 36.11 2.32
2622 4098 3.679502 GTCCAAATTTGTTAGCCATGCAC 59.320 43.478 16.73 0.00 0.00 4.57
2623 4099 2.667481 CCAAATTTGTTAGCCATGCACG 59.333 45.455 16.73 0.00 0.00 5.34
2624 4100 2.652941 AATTTGTTAGCCATGCACGG 57.347 45.000 0.00 0.00 0.00 4.94
2625 4101 1.832883 ATTTGTTAGCCATGCACGGA 58.167 45.000 1.12 0.00 0.00 4.69
2626 4102 1.610363 TTTGTTAGCCATGCACGGAA 58.390 45.000 1.12 0.00 0.00 4.30
2627 4103 1.164411 TTGTTAGCCATGCACGGAAG 58.836 50.000 1.12 0.00 0.00 3.46
2628 4104 0.323302 TGTTAGCCATGCACGGAAGA 59.677 50.000 1.12 0.00 0.00 2.87
2629 4105 1.065491 TGTTAGCCATGCACGGAAGAT 60.065 47.619 1.12 0.00 0.00 2.40
2630 4106 2.017049 GTTAGCCATGCACGGAAGATT 58.983 47.619 1.12 0.00 0.00 2.40
2631 4107 3.202906 GTTAGCCATGCACGGAAGATTA 58.797 45.455 1.12 0.00 0.00 1.75
2632 4108 2.418368 AGCCATGCACGGAAGATTAA 57.582 45.000 1.12 0.00 0.00 1.40
2633 4109 2.936202 AGCCATGCACGGAAGATTAAT 58.064 42.857 1.12 0.00 0.00 1.40
2634 4110 2.880890 AGCCATGCACGGAAGATTAATC 59.119 45.455 1.12 7.41 0.00 1.75
2635 4111 2.030805 GCCATGCACGGAAGATTAATCC 60.031 50.000 1.12 0.00 0.00 3.01
2636 4112 3.213506 CCATGCACGGAAGATTAATCCA 58.786 45.455 11.92 1.63 36.74 3.41
2637 4113 3.631686 CCATGCACGGAAGATTAATCCAA 59.368 43.478 11.92 0.00 36.74 3.53
2638 4114 4.261322 CCATGCACGGAAGATTAATCCAAG 60.261 45.833 11.92 4.38 36.74 3.61
2639 4115 4.214986 TGCACGGAAGATTAATCCAAGA 57.785 40.909 11.92 0.00 36.74 3.02
2640 4116 4.191544 TGCACGGAAGATTAATCCAAGAG 58.808 43.478 11.92 3.39 36.74 2.85
2641 4117 3.002759 GCACGGAAGATTAATCCAAGAGC 59.997 47.826 11.92 7.86 36.74 4.09
2642 4118 4.446371 CACGGAAGATTAATCCAAGAGCT 58.554 43.478 11.92 0.00 36.74 4.09
2643 4119 5.601662 CACGGAAGATTAATCCAAGAGCTA 58.398 41.667 11.92 0.00 36.74 3.32
2644 4120 5.694006 CACGGAAGATTAATCCAAGAGCTAG 59.306 44.000 11.92 0.00 36.74 3.42
2645 4121 4.688413 CGGAAGATTAATCCAAGAGCTAGC 59.312 45.833 6.62 6.62 36.74 3.42
2646 4122 5.510520 CGGAAGATTAATCCAAGAGCTAGCT 60.511 44.000 19.45 19.45 36.74 3.32
2647 4123 6.294787 CGGAAGATTAATCCAAGAGCTAGCTA 60.295 42.308 19.38 0.97 36.74 3.32
2648 4124 7.578571 CGGAAGATTAATCCAAGAGCTAGCTAT 60.579 40.741 19.38 12.73 36.74 2.97
2649 4125 7.548780 GGAAGATTAATCCAAGAGCTAGCTATG 59.451 40.741 19.38 18.93 36.92 2.23
2650 4126 6.945218 AGATTAATCCAAGAGCTAGCTATGG 58.055 40.000 30.33 30.33 35.59 2.74
2651 4127 6.728164 AGATTAATCCAAGAGCTAGCTATGGA 59.272 38.462 35.82 35.82 42.49 3.41
2652 4128 4.615588 AATCCAAGAGCTAGCTATGGAC 57.384 45.455 36.21 19.43 41.70 4.02
2653 4129 3.032265 TCCAAGAGCTAGCTATGGACA 57.968 47.619 32.83 20.37 37.28 4.02
2654 4130 2.961741 TCCAAGAGCTAGCTATGGACAG 59.038 50.000 32.83 17.28 37.28 3.51
2655 4131 2.036992 CCAAGAGCTAGCTATGGACAGG 59.963 54.545 31.63 17.54 36.04 4.00
2656 4132 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
2657 4133 0.972883 GAGCTAGCTATGGACAGGGG 59.027 60.000 19.38 0.00 0.00 4.79
2658 4134 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
2659 4135 0.394565 GCTAGCTATGGACAGGGGTG 59.605 60.000 7.70 0.00 0.00 4.61
2660 4136 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
2661 4137 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
2662 4138 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
2663 4139 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
2664 4140 1.610967 TATGGACAGGGGTGCGTGA 60.611 57.895 0.00 0.00 38.35 4.35
2665 4141 1.195442 TATGGACAGGGGTGCGTGAA 61.195 55.000 0.00 0.00 38.35 3.18
2666 4142 2.063015 ATGGACAGGGGTGCGTGAAA 62.063 55.000 0.00 0.00 38.35 2.69
2667 4143 1.966451 GGACAGGGGTGCGTGAAAG 60.966 63.158 0.00 0.00 0.00 2.62
2668 4144 2.594592 ACAGGGGTGCGTGAAAGC 60.595 61.111 0.00 0.00 37.71 3.51
2669 4145 2.281761 CAGGGGTGCGTGAAAGCT 60.282 61.111 0.00 0.00 38.13 3.74
2670 4146 1.898574 CAGGGGTGCGTGAAAGCTT 60.899 57.895 0.00 0.00 38.13 3.74
2671 4147 1.898574 AGGGGTGCGTGAAAGCTTG 60.899 57.895 0.00 0.00 38.13 4.01
2672 4148 2.050077 GGGTGCGTGAAAGCTTGC 60.050 61.111 0.00 0.00 38.13 4.01
2673 4149 2.555547 GGGTGCGTGAAAGCTTGCT 61.556 57.895 5.89 0.00 38.13 3.91
2674 4150 1.234615 GGGTGCGTGAAAGCTTGCTA 61.235 55.000 5.89 0.00 38.13 3.49
2675 4151 0.804989 GGTGCGTGAAAGCTTGCTAT 59.195 50.000 5.89 0.00 38.13 2.97
2676 4152 1.202076 GGTGCGTGAAAGCTTGCTATC 60.202 52.381 5.89 0.00 38.13 2.08
2677 4153 1.086696 TGCGTGAAAGCTTGCTATCC 58.913 50.000 5.89 0.00 38.13 2.59
2678 4154 1.086696 GCGTGAAAGCTTGCTATCCA 58.913 50.000 5.89 0.00 0.00 3.41
2679 4155 1.672881 GCGTGAAAGCTTGCTATCCAT 59.327 47.619 5.89 0.00 0.00 3.41
2680 4156 2.540361 GCGTGAAAGCTTGCTATCCATG 60.540 50.000 5.89 2.28 0.00 3.66
2681 4157 2.679837 CGTGAAAGCTTGCTATCCATGT 59.320 45.455 5.89 0.00 0.00 3.21
2682 4158 3.486375 CGTGAAAGCTTGCTATCCATGTG 60.486 47.826 5.89 0.00 0.00 3.21
2683 4159 2.424601 TGAAAGCTTGCTATCCATGTGC 59.575 45.455 5.89 0.00 0.00 4.57
2684 4160 1.396653 AAGCTTGCTATCCATGTGCC 58.603 50.000 0.00 0.00 0.00 5.01
2685 4161 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
2686 4162 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
2687 4163 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
2688 4164 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
2689 4165 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
2690 4166 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
2691 4167 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
2692 4168 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
2693 4169 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
2694 4170 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
2695 4171 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
2696 4172 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
2697 4173 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
2698 4174 0.983467 TGTGCCAGAGCCATGAGTTA 59.017 50.000 0.00 0.00 38.69 2.24
2699 4175 1.065926 TGTGCCAGAGCCATGAGTTAG 60.066 52.381 0.00 0.00 38.69 2.34
2700 4176 1.065854 GTGCCAGAGCCATGAGTTAGT 60.066 52.381 0.00 0.00 38.69 2.24
2701 4177 1.630369 TGCCAGAGCCATGAGTTAGTT 59.370 47.619 0.00 0.00 38.69 2.24
2702 4178 2.837591 TGCCAGAGCCATGAGTTAGTTA 59.162 45.455 0.00 0.00 38.69 2.24
2703 4179 3.198872 GCCAGAGCCATGAGTTAGTTAC 58.801 50.000 0.00 0.00 0.00 2.50
2704 4180 3.448686 CCAGAGCCATGAGTTAGTTACG 58.551 50.000 0.00 0.00 0.00 3.18
2705 4181 3.130516 CCAGAGCCATGAGTTAGTTACGA 59.869 47.826 0.00 0.00 0.00 3.43
2706 4182 4.355437 CAGAGCCATGAGTTAGTTACGAG 58.645 47.826 0.00 0.00 0.00 4.18
2707 4183 4.096532 CAGAGCCATGAGTTAGTTACGAGA 59.903 45.833 0.00 0.00 0.00 4.04
2708 4184 4.890581 AGAGCCATGAGTTAGTTACGAGAT 59.109 41.667 0.00 0.00 0.00 2.75
2709 4185 5.361285 AGAGCCATGAGTTAGTTACGAGATT 59.639 40.000 0.00 0.00 0.00 2.40
2710 4186 5.978814 AGCCATGAGTTAGTTACGAGATTT 58.021 37.500 0.00 0.00 0.00 2.17
2711 4187 6.407202 AGCCATGAGTTAGTTACGAGATTTT 58.593 36.000 0.00 0.00 0.00 1.82
2712 4188 7.553334 AGCCATGAGTTAGTTACGAGATTTTA 58.447 34.615 0.00 0.00 0.00 1.52
2713 4189 8.204836 AGCCATGAGTTAGTTACGAGATTTTAT 58.795 33.333 0.00 0.00 0.00 1.40
2714 4190 8.276325 GCCATGAGTTAGTTACGAGATTTTATG 58.724 37.037 0.00 0.00 0.00 1.90
2715 4191 8.765219 CCATGAGTTAGTTACGAGATTTTATGG 58.235 37.037 0.00 0.00 0.00 2.74
2716 4192 8.765219 CATGAGTTAGTTACGAGATTTTATGGG 58.235 37.037 0.00 0.00 0.00 4.00
2717 4193 7.844009 TGAGTTAGTTACGAGATTTTATGGGT 58.156 34.615 0.00 0.00 0.00 4.51
2718 4194 8.316214 TGAGTTAGTTACGAGATTTTATGGGTT 58.684 33.333 0.00 0.00 0.00 4.11
2719 4195 9.159364 GAGTTAGTTACGAGATTTTATGGGTTT 57.841 33.333 0.00 0.00 0.00 3.27
2720 4196 9.159364 AGTTAGTTACGAGATTTTATGGGTTTC 57.841 33.333 0.00 0.00 0.00 2.78
2721 4197 8.938906 GTTAGTTACGAGATTTTATGGGTTTCA 58.061 33.333 0.00 0.00 0.00 2.69
2722 4198 7.373778 AGTTACGAGATTTTATGGGTTTCAC 57.626 36.000 0.00 0.00 0.00 3.18
2723 4199 6.373495 AGTTACGAGATTTTATGGGTTTCACC 59.627 38.462 0.00 0.00 37.60 4.02
2724 4200 4.918588 ACGAGATTTTATGGGTTTCACCT 58.081 39.130 0.00 0.00 38.64 4.00
2725 4201 4.941873 ACGAGATTTTATGGGTTTCACCTC 59.058 41.667 0.00 0.00 38.64 3.85
2726 4202 5.186198 CGAGATTTTATGGGTTTCACCTCT 58.814 41.667 0.00 0.00 38.64 3.69
2727 4203 6.070424 ACGAGATTTTATGGGTTTCACCTCTA 60.070 38.462 0.00 0.00 38.64 2.43
2728 4204 6.480320 CGAGATTTTATGGGTTTCACCTCTAG 59.520 42.308 0.00 0.00 38.64 2.43
2729 4205 6.122964 AGATTTTATGGGTTTCACCTCTAGC 58.877 40.000 0.00 0.00 38.64 3.42
2730 4206 3.926058 TTATGGGTTTCACCTCTAGCC 57.074 47.619 0.00 0.00 38.64 3.93
2731 4207 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
2732 4208 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
2733 4209 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
2734 4210 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
2735 4211 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
2736 4212 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
2737 4213 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
2738 4214 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
2739 4215 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
2740 4216 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
2741 4217 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
2742 4218 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
2743 4219 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
2744 4220 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
2745 4221 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
2746 4222 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
2757 4233 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
2758 4234 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
2759 4235 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
2760 4236 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
2761 4237 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
2762 4238 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
2763 4239 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
2764 4240 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
2765 4241 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
2766 4242 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
2767 4243 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
2768 4244 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
2769 4245 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
2770 4246 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
2771 4247 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
2772 4248 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
2773 4249 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
2774 4250 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
2775 4251 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
2776 4252 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
2777 4253 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
2778 4254 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
2779 4255 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
2780 4256 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
2781 4257 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
2782 4258 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2783 4259 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2784 4260 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2785 4261 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2786 4262 4.207599 GTTGTTGTTGTTGTTGTTGTTGC 58.792 39.130 0.00 0.00 0.00 4.17
2787 4263 3.457234 TGTTGTTGTTGTTGTTGTTGCA 58.543 36.364 0.00 0.00 0.00 4.08
2788 4264 4.060900 TGTTGTTGTTGTTGTTGTTGCAT 58.939 34.783 0.00 0.00 0.00 3.96
2819 4295 9.869844 GATTAATTTCTTCAACCTGTATGATCG 57.130 33.333 0.00 0.00 0.00 3.69
2820 4296 9.613428 ATTAATTTCTTCAACCTGTATGATCGA 57.387 29.630 0.00 0.00 0.00 3.59
2837 4313 1.277842 TCGAGCACACCATGTACCATT 59.722 47.619 0.00 0.00 0.00 3.16
2979 4455 3.714798 TGTCACTCTAGGGGAAAACAGTT 59.285 43.478 0.00 0.00 0.00 3.16
3073 4549 4.192317 AGAGGGTTTTATCTTGCGCTAAG 58.808 43.478 9.73 11.02 37.76 2.18
3177 4889 2.224606 CTTTCTTCACTGGAGCAAGCA 58.775 47.619 0.00 0.00 0.00 3.91
3227 4939 5.865552 TCATTAAACGCCAAGTGAGTACTAC 59.134 40.000 0.00 0.00 35.69 2.73
3228 4940 5.458041 TTAAACGCCAAGTGAGTACTACT 57.542 39.130 0.00 0.00 35.69 2.57
3229 4941 3.572604 AACGCCAAGTGAGTACTACTC 57.427 47.619 9.04 9.04 45.26 2.59
3230 4942 1.817447 ACGCCAAGTGAGTACTACTCC 59.183 52.381 12.79 5.46 44.44 3.85
3231 4943 1.134560 CGCCAAGTGAGTACTACTCCC 59.865 57.143 12.79 2.47 44.44 4.30
3232 4944 2.458620 GCCAAGTGAGTACTACTCCCT 58.541 52.381 12.79 4.74 44.44 4.20
3233 4945 2.832733 GCCAAGTGAGTACTACTCCCTT 59.167 50.000 12.79 10.25 42.34 3.95
3234 4946 3.119065 GCCAAGTGAGTACTACTCCCTTC 60.119 52.174 10.14 0.00 40.20 3.46
3235 4947 3.128938 CCAAGTGAGTACTACTCCCTTCG 59.871 52.174 10.14 2.28 40.20 3.79
3236 4948 3.717452 AGTGAGTACTACTCCCTTCGT 57.283 47.619 12.79 0.00 44.44 3.85
3237 4949 4.031636 AGTGAGTACTACTCCCTTCGTT 57.968 45.455 12.79 0.00 44.44 3.85
3238 4950 4.009002 AGTGAGTACTACTCCCTTCGTTC 58.991 47.826 12.79 0.00 44.44 3.95
3239 4951 3.128415 GTGAGTACTACTCCCTTCGTTCC 59.872 52.174 12.79 0.00 44.44 3.62
3240 4952 3.009916 TGAGTACTACTCCCTTCGTTCCT 59.990 47.826 12.79 0.00 44.44 3.36
3241 4953 4.225942 TGAGTACTACTCCCTTCGTTCCTA 59.774 45.833 12.79 0.00 44.44 2.94
3242 4954 5.184892 AGTACTACTCCCTTCGTTCCTAA 57.815 43.478 0.00 0.00 0.00 2.69
3243 4955 5.574188 AGTACTACTCCCTTCGTTCCTAAA 58.426 41.667 0.00 0.00 0.00 1.85
3244 4956 6.193504 AGTACTACTCCCTTCGTTCCTAAAT 58.806 40.000 0.00 0.00 0.00 1.40
3245 4957 7.349598 AGTACTACTCCCTTCGTTCCTAAATA 58.650 38.462 0.00 0.00 0.00 1.40
3246 4958 6.462552 ACTACTCCCTTCGTTCCTAAATAC 57.537 41.667 0.00 0.00 0.00 1.89
3247 4959 6.193504 ACTACTCCCTTCGTTCCTAAATACT 58.806 40.000 0.00 0.00 0.00 2.12
3248 4960 6.666980 ACTACTCCCTTCGTTCCTAAATACTT 59.333 38.462 0.00 0.00 0.00 2.24
3249 4961 5.731591 ACTCCCTTCGTTCCTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
3250 4962 5.247792 ACTCCCTTCGTTCCTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
3251 4963 5.727434 TCCCTTCGTTCCTAAATACTTGTC 58.273 41.667 0.00 0.00 0.00 3.18
3252 4964 5.482878 TCCCTTCGTTCCTAAATACTTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
3253 4965 6.013984 TCCCTTCGTTCCTAAATACTTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
3254 4966 6.653740 CCCTTCGTTCCTAAATACTTGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
3255 4967 7.148457 CCCTTCGTTCCTAAATACTTGTCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
3256 4968 7.603024 CCTTCGTTCCTAAATACTTGTCTTTCT 59.397 37.037 0.00 0.00 0.00 2.52
3257 4969 9.635520 CTTCGTTCCTAAATACTTGTCTTTCTA 57.364 33.333 0.00 0.00 0.00 2.10
3258 4970 9.635520 TTCGTTCCTAAATACTTGTCTTTCTAG 57.364 33.333 0.00 0.00 0.00 2.43
3259 4971 8.248945 TCGTTCCTAAATACTTGTCTTTCTAGG 58.751 37.037 0.00 0.00 0.00 3.02
3260 4972 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
3261 4973 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
3262 4974 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
3263 4975 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
3264 4976 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
3269 4981 7.817418 ACTTGTCTTTCTAGGCATTTTAACA 57.183 32.000 0.00 0.00 35.56 2.41
3270 4982 8.232913 ACTTGTCTTTCTAGGCATTTTAACAA 57.767 30.769 0.00 0.00 35.56 2.83
3271 4983 8.352942 ACTTGTCTTTCTAGGCATTTTAACAAG 58.647 33.333 0.00 0.00 43.26 3.16
3272 4984 7.817418 TGTCTTTCTAGGCATTTTAACAAGT 57.183 32.000 0.00 0.00 29.10 3.16
3273 4985 7.648142 TGTCTTTCTAGGCATTTTAACAAGTG 58.352 34.615 0.00 0.00 29.10 3.16
3274 4986 7.500892 TGTCTTTCTAGGCATTTTAACAAGTGA 59.499 33.333 0.00 0.00 29.10 3.41
3275 4987 7.803659 GTCTTTCTAGGCATTTTAACAAGTGAC 59.196 37.037 0.00 0.00 0.00 3.67
3276 4988 7.719633 TCTTTCTAGGCATTTTAACAAGTGACT 59.280 33.333 0.00 0.00 40.91 3.41
3277 4989 8.911918 TTTCTAGGCATTTTAACAAGTGACTA 57.088 30.769 0.00 0.00 38.82 2.59
3278 4990 7.900782 TCTAGGCATTTTAACAAGTGACTAC 57.099 36.000 0.00 0.00 38.82 2.73
3279 4991 7.446769 TCTAGGCATTTTAACAAGTGACTACA 58.553 34.615 0.00 0.00 38.82 2.74
3280 4992 8.100791 TCTAGGCATTTTAACAAGTGACTACAT 58.899 33.333 0.00 0.00 38.82 2.29
3281 4993 9.378551 CTAGGCATTTTAACAAGTGACTACATA 57.621 33.333 0.00 0.00 38.82 2.29
3282 4994 8.040716 AGGCATTTTAACAAGTGACTACATAC 57.959 34.615 0.00 0.00 36.22 2.39
3283 4995 6.959311 GGCATTTTAACAAGTGACTACATACG 59.041 38.462 0.00 0.00 0.00 3.06
3284 4996 6.959311 GCATTTTAACAAGTGACTACATACGG 59.041 38.462 0.00 0.00 0.00 4.02
3285 4997 7.148540 GCATTTTAACAAGTGACTACATACGGA 60.149 37.037 0.00 0.00 0.00 4.69
3286 4998 7.878477 TTTTAACAAGTGACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
3287 4999 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3288 5000 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3289 5001 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3290 5002 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3291 5003 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3292 5004 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3293 5005 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3294 5006 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3295 5007 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3296 5008 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3297 5009 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3298 5010 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3299 5011 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3300 5012 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3301 5013 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3302 5014 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3303 5015 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3304 5016 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3305 5017 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3306 5018 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3380 5092 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3381 5093 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3382 5094 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3383 5095 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3384 5096 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3385 5097 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3386 5098 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3387 5099 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3388 5100 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3389 5101 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
3390 5102 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
3391 5103 4.591321 TTTAGGAACGGAGGGAGTACTA 57.409 45.455 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
302 306 3.636381 CAGAGAAGCAAGGAAGCAAAAC 58.364 45.455 0.00 0.00 36.85 2.43
338 342 9.736023 CCATAAATTTATTCTTTGTGTAGCTCC 57.264 33.333 8.01 0.00 0.00 4.70
766 1052 4.811555 TGAACTGCAGTCATGTGTTTAC 57.188 40.909 21.95 2.80 0.00 2.01
767 1053 4.881273 ACTTGAACTGCAGTCATGTGTTTA 59.119 37.500 21.95 0.00 0.00 2.01
951 1372 2.146724 TGTGTGTGTGGAGAGGGGG 61.147 63.158 0.00 0.00 0.00 5.40
974 1406 3.966218 GGATTGTTTCTTCGTGTTTCGTG 59.034 43.478 0.00 0.00 40.80 4.35
1069 1841 2.119801 AGATTTGCATGGCTCTCGTT 57.880 45.000 0.00 0.00 0.00 3.85
1744 3218 2.424234 CCAAAGTCCTCCCAGTTGGAAA 60.424 50.000 0.00 0.00 44.57 3.13
2073 3547 7.875041 CAGAACTGAAGATTCTGGTTCTTTCTA 59.125 37.037 20.69 0.00 46.21 2.10
2131 3605 0.976641 ACCGAGAGATTGTCTGCCAA 59.023 50.000 0.00 0.00 34.71 4.52
2505 3979 9.195411 ACAAAATTACAACAGCTAATTGTCATG 57.805 29.630 16.59 12.29 40.68 3.07
2535 4009 8.753133 CATATAGGCTACACTCTTGGATTGATA 58.247 37.037 0.00 0.00 0.00 2.15
2604 4080 2.560542 TCCGTGCATGGCTAACAAATTT 59.439 40.909 20.86 0.00 0.00 1.82
2622 4098 4.688413 GCTAGCTCTTGGATTAATCTTCCG 59.312 45.833 14.95 2.58 35.94 4.30
2623 4099 5.863965 AGCTAGCTCTTGGATTAATCTTCC 58.136 41.667 12.68 0.97 0.00 3.46
2624 4100 7.548780 CCATAGCTAGCTCTTGGATTAATCTTC 59.451 40.741 29.94 0.38 33.69 2.87
2625 4101 7.236432 TCCATAGCTAGCTCTTGGATTAATCTT 59.764 37.037 31.26 6.29 35.14 2.40
2626 4102 6.728164 TCCATAGCTAGCTCTTGGATTAATCT 59.272 38.462 31.26 6.86 35.14 2.40
2627 4103 6.816140 GTCCATAGCTAGCTCTTGGATTAATC 59.184 42.308 34.54 24.08 39.25 1.75
2628 4104 6.270927 TGTCCATAGCTAGCTCTTGGATTAAT 59.729 38.462 34.54 15.94 39.25 1.40
2629 4105 5.602561 TGTCCATAGCTAGCTCTTGGATTAA 59.397 40.000 34.54 25.36 39.25 1.40
2630 4106 5.147767 TGTCCATAGCTAGCTCTTGGATTA 58.852 41.667 34.54 27.23 39.25 1.75
2631 4107 3.969976 TGTCCATAGCTAGCTCTTGGATT 59.030 43.478 34.54 12.04 39.25 3.01
2632 4108 3.577848 CTGTCCATAGCTAGCTCTTGGAT 59.422 47.826 34.54 18.36 39.25 3.41
2633 4109 2.961741 CTGTCCATAGCTAGCTCTTGGA 59.038 50.000 31.26 31.26 36.64 3.53
2634 4110 2.036992 CCTGTCCATAGCTAGCTCTTGG 59.963 54.545 28.71 28.71 33.36 3.61
2635 4111 2.036992 CCCTGTCCATAGCTAGCTCTTG 59.963 54.545 23.26 19.30 0.00 3.02
2636 4112 2.324541 CCCTGTCCATAGCTAGCTCTT 58.675 52.381 23.26 7.47 0.00 2.85
2637 4113 1.482177 CCCCTGTCCATAGCTAGCTCT 60.482 57.143 23.26 9.05 0.00 4.09
2638 4114 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09
2639 4115 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
2640 4116 0.394565 CACCCCTGTCCATAGCTAGC 59.605 60.000 6.62 6.62 0.00 3.42
2641 4117 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
2642 4118 1.399744 CGCACCCCTGTCCATAGCTA 61.400 60.000 0.00 0.00 0.00 3.32
2643 4119 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
2644 4120 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
2645 4121 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
2646 4122 1.195442 TTCACGCACCCCTGTCCATA 61.195 55.000 0.00 0.00 0.00 2.74
2647 4123 2.063015 TTTCACGCACCCCTGTCCAT 62.063 55.000 0.00 0.00 0.00 3.41
2648 4124 2.674563 CTTTCACGCACCCCTGTCCA 62.675 60.000 0.00 0.00 0.00 4.02
2649 4125 1.966451 CTTTCACGCACCCCTGTCC 60.966 63.158 0.00 0.00 0.00 4.02
2650 4126 2.617274 GCTTTCACGCACCCCTGTC 61.617 63.158 0.00 0.00 0.00 3.51
2651 4127 2.594592 GCTTTCACGCACCCCTGT 60.595 61.111 0.00 0.00 0.00 4.00
2652 4128 1.898574 AAGCTTTCACGCACCCCTG 60.899 57.895 0.00 0.00 0.00 4.45
2653 4129 1.898574 CAAGCTTTCACGCACCCCT 60.899 57.895 0.00 0.00 0.00 4.79
2654 4130 2.644992 CAAGCTTTCACGCACCCC 59.355 61.111 0.00 0.00 0.00 4.95
2655 4131 1.234615 TAGCAAGCTTTCACGCACCC 61.235 55.000 8.96 0.00 0.00 4.61
2656 4132 0.804989 ATAGCAAGCTTTCACGCACC 59.195 50.000 8.96 0.00 0.00 5.01
2657 4133 1.202076 GGATAGCAAGCTTTCACGCAC 60.202 52.381 13.19 1.03 0.00 5.34
2658 4134 1.086696 GGATAGCAAGCTTTCACGCA 58.913 50.000 13.19 0.00 0.00 5.24
2659 4135 1.086696 TGGATAGCAAGCTTTCACGC 58.913 50.000 13.19 0.00 0.00 5.34
2660 4136 2.679837 ACATGGATAGCAAGCTTTCACG 59.320 45.455 13.19 4.79 0.00 4.35
2661 4137 3.733077 GCACATGGATAGCAAGCTTTCAC 60.733 47.826 13.19 4.99 0.00 3.18
2662 4138 2.424601 GCACATGGATAGCAAGCTTTCA 59.575 45.455 13.19 4.92 0.00 2.69
2663 4139 2.223665 GGCACATGGATAGCAAGCTTTC 60.224 50.000 0.00 1.55 0.00 2.62
2664 4140 1.753073 GGCACATGGATAGCAAGCTTT 59.247 47.619 0.00 0.00 0.00 3.51
2665 4141 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
2666 4142 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
2667 4143 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
2668 4144 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
2669 4145 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
2670 4146 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
2671 4147 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
2672 4148 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
2673 4149 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
2674 4150 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
2675 4151 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
2676 4152 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
2677 4153 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
2678 4154 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
2679 4155 0.983467 TAACTCATGGCTCTGGCACA 59.017 50.000 0.00 0.00 41.84 4.57
2680 4156 1.065854 ACTAACTCATGGCTCTGGCAC 60.066 52.381 0.00 0.00 41.84 5.01
2681 4157 1.279496 ACTAACTCATGGCTCTGGCA 58.721 50.000 0.00 0.00 43.52 4.92
2682 4158 2.409948 AACTAACTCATGGCTCTGGC 57.590 50.000 0.00 0.00 37.82 4.85
2683 4159 3.130516 TCGTAACTAACTCATGGCTCTGG 59.869 47.826 0.00 0.00 0.00 3.86
2684 4160 4.096532 TCTCGTAACTAACTCATGGCTCTG 59.903 45.833 0.00 0.00 0.00 3.35
2685 4161 4.270834 TCTCGTAACTAACTCATGGCTCT 58.729 43.478 0.00 0.00 0.00 4.09
2686 4162 4.634184 TCTCGTAACTAACTCATGGCTC 57.366 45.455 0.00 0.00 0.00 4.70
2687 4163 5.599999 AATCTCGTAACTAACTCATGGCT 57.400 39.130 0.00 0.00 0.00 4.75
2688 4164 6.663944 AAAATCTCGTAACTAACTCATGGC 57.336 37.500 0.00 0.00 0.00 4.40
2689 4165 8.765219 CCATAAAATCTCGTAACTAACTCATGG 58.235 37.037 0.00 0.00 0.00 3.66
2690 4166 8.765219 CCCATAAAATCTCGTAACTAACTCATG 58.235 37.037 0.00 0.00 0.00 3.07
2691 4167 8.483758 ACCCATAAAATCTCGTAACTAACTCAT 58.516 33.333 0.00 0.00 0.00 2.90
2692 4168 7.844009 ACCCATAAAATCTCGTAACTAACTCA 58.156 34.615 0.00 0.00 0.00 3.41
2693 4169 8.713737 AACCCATAAAATCTCGTAACTAACTC 57.286 34.615 0.00 0.00 0.00 3.01
2694 4170 9.159364 GAAACCCATAAAATCTCGTAACTAACT 57.841 33.333 0.00 0.00 0.00 2.24
2695 4171 8.938906 TGAAACCCATAAAATCTCGTAACTAAC 58.061 33.333 0.00 0.00 0.00 2.34
2696 4172 8.938906 GTGAAACCCATAAAATCTCGTAACTAA 58.061 33.333 0.00 0.00 0.00 2.24
2697 4173 8.483307 GTGAAACCCATAAAATCTCGTAACTA 57.517 34.615 0.00 0.00 0.00 2.24
2698 4174 7.373778 GTGAAACCCATAAAATCTCGTAACT 57.626 36.000 0.00 0.00 0.00 2.24
2716 4192 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
2717 4193 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
2718 4194 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
2719 4195 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
2720 4196 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
2721 4197 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
2722 4198 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
2723 4199 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
2724 4200 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
2725 4201 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
2726 4202 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
2727 4203 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
2736 4212 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
2737 4213 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
2738 4214 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
2739 4215 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
2740 4216 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
2741 4217 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
2742 4218 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
2743 4219 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
2744 4220 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
2745 4221 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
2746 4222 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
2747 4223 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
2748 4224 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
2749 4225 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
2750 4226 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
2751 4227 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
2752 4228 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
2753 4229 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
2754 4230 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
2755 4231 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
2756 4232 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
2757 4233 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
2758 4234 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
2759 4235 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2760 4236 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2761 4237 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2762 4238 5.727791 GCAACAACAACAACAACAACAACAA 60.728 36.000 0.00 0.00 0.00 2.83
2763 4239 4.260375 GCAACAACAACAACAACAACAACA 60.260 37.500 0.00 0.00 0.00 3.33
2764 4240 4.207599 GCAACAACAACAACAACAACAAC 58.792 39.130 0.00 0.00 0.00 3.32
2765 4241 3.871006 TGCAACAACAACAACAACAACAA 59.129 34.783 0.00 0.00 0.00 2.83
2766 4242 3.457234 TGCAACAACAACAACAACAACA 58.543 36.364 0.00 0.00 0.00 3.33
2767 4243 4.660352 ATGCAACAACAACAACAACAAC 57.340 36.364 0.00 0.00 0.00 3.32
2768 4244 5.714047 TCTATGCAACAACAACAACAACAA 58.286 33.333 0.00 0.00 0.00 2.83
2769 4245 5.316327 TCTATGCAACAACAACAACAACA 57.684 34.783 0.00 0.00 0.00 3.33
2770 4246 6.033341 TCTTCTATGCAACAACAACAACAAC 58.967 36.000 0.00 0.00 0.00 3.32
2771 4247 6.201226 TCTTCTATGCAACAACAACAACAA 57.799 33.333 0.00 0.00 0.00 2.83
2772 4248 5.826601 TCTTCTATGCAACAACAACAACA 57.173 34.783 0.00 0.00 0.00 3.33
2773 4249 8.795786 TTAATCTTCTATGCAACAACAACAAC 57.204 30.769 0.00 0.00 0.00 3.32
2774 4250 9.979578 AATTAATCTTCTATGCAACAACAACAA 57.020 25.926 0.00 0.00 0.00 2.83
2775 4251 9.979578 AAATTAATCTTCTATGCAACAACAACA 57.020 25.926 0.00 0.00 0.00 3.33
2817 4293 2.356992 TGGTACATGGTGTGCTCGA 58.643 52.632 0.00 0.00 33.35 4.04
2837 4313 4.706476 AGTGCCAATAAGAGCTTGCAAATA 59.294 37.500 0.00 0.00 0.00 1.40
3073 4549 7.170828 TGTTGTCATTACCATGATATCGTTAGC 59.829 37.037 0.00 0.00 41.64 3.09
3177 4889 0.994247 TCCATCTCCATGCCTGTGTT 59.006 50.000 0.00 0.00 0.00 3.32
3227 4939 5.731591 ACAAGTATTTAGGAACGAAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
3228 4940 5.482878 AGACAAGTATTTAGGAACGAAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
3229 4941 5.731591 AGACAAGTATTTAGGAACGAAGGG 58.268 41.667 0.00 0.00 0.00 3.95
3230 4942 7.603024 AGAAAGACAAGTATTTAGGAACGAAGG 59.397 37.037 0.00 0.00 0.00 3.46
3231 4943 8.535690 AGAAAGACAAGTATTTAGGAACGAAG 57.464 34.615 0.00 0.00 0.00 3.79
3232 4944 9.635520 CTAGAAAGACAAGTATTTAGGAACGAA 57.364 33.333 0.00 0.00 0.00 3.85
3233 4945 8.248945 CCTAGAAAGACAAGTATTTAGGAACGA 58.751 37.037 4.01 0.00 26.70 3.85
3234 4946 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
3235 4947 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
3236 4948 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
3237 4949 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
3238 4950 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
3243 4955 9.515226 TGTTAAAATGCCTAGAAAGACAAGTAT 57.485 29.630 0.00 0.00 0.00 2.12
3244 4956 8.911918 TGTTAAAATGCCTAGAAAGACAAGTA 57.088 30.769 0.00 0.00 0.00 2.24
3245 4957 7.817418 TGTTAAAATGCCTAGAAAGACAAGT 57.183 32.000 0.00 0.00 0.00 3.16
3246 4958 8.352942 ACTTGTTAAAATGCCTAGAAAGACAAG 58.647 33.333 0.00 0.00 43.36 3.16
3247 4959 8.134895 CACTTGTTAAAATGCCTAGAAAGACAA 58.865 33.333 0.00 0.00 0.00 3.18
3248 4960 7.500892 TCACTTGTTAAAATGCCTAGAAAGACA 59.499 33.333 0.00 0.00 0.00 3.41
3249 4961 7.803659 GTCACTTGTTAAAATGCCTAGAAAGAC 59.196 37.037 0.00 0.00 0.00 3.01
3250 4962 7.719633 AGTCACTTGTTAAAATGCCTAGAAAGA 59.280 33.333 0.00 0.00 0.00 2.52
3251 4963 7.875971 AGTCACTTGTTAAAATGCCTAGAAAG 58.124 34.615 0.00 0.00 0.00 2.62
3252 4964 7.817418 AGTCACTTGTTAAAATGCCTAGAAA 57.183 32.000 0.00 0.00 0.00 2.52
3253 4965 7.934665 TGTAGTCACTTGTTAAAATGCCTAGAA 59.065 33.333 0.00 0.00 0.00 2.10
3254 4966 7.446769 TGTAGTCACTTGTTAAAATGCCTAGA 58.553 34.615 0.00 0.00 0.00 2.43
3255 4967 7.667043 TGTAGTCACTTGTTAAAATGCCTAG 57.333 36.000 0.00 0.00 0.00 3.02
3256 4968 9.158233 GTATGTAGTCACTTGTTAAAATGCCTA 57.842 33.333 0.00 0.00 0.00 3.93
3257 4969 7.148474 CGTATGTAGTCACTTGTTAAAATGCCT 60.148 37.037 0.00 0.00 0.00 4.75
3258 4970 6.959311 CGTATGTAGTCACTTGTTAAAATGCC 59.041 38.462 0.00 0.00 0.00 4.40
3259 4971 6.959311 CCGTATGTAGTCACTTGTTAAAATGC 59.041 38.462 0.00 0.00 0.00 3.56
3260 4972 8.246908 TCCGTATGTAGTCACTTGTTAAAATG 57.753 34.615 0.00 0.00 0.00 2.32
3261 4973 7.064253 GCTCCGTATGTAGTCACTTGTTAAAAT 59.936 37.037 0.00 0.00 0.00 1.82
3262 4974 6.366877 GCTCCGTATGTAGTCACTTGTTAAAA 59.633 38.462 0.00 0.00 0.00 1.52
3263 4975 5.865552 GCTCCGTATGTAGTCACTTGTTAAA 59.134 40.000 0.00 0.00 0.00 1.52
3264 4976 5.047872 TGCTCCGTATGTAGTCACTTGTTAA 60.048 40.000 0.00 0.00 0.00 2.01
3265 4977 4.460034 TGCTCCGTATGTAGTCACTTGTTA 59.540 41.667 0.00 0.00 0.00 2.41
3266 4978 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3267 4979 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3268 4980 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3269 4981 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3270 4982 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3271 4983 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3272 4984 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3273 4985 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3274 4986 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3275 4987 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3276 4988 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3277 4989 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3278 4990 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3279 4991 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3280 4992 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3281 4993 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3282 4994 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3283 4995 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3284 4996 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3285 4997 7.229306 TCAAAGTGTAGATTCACTCATTTTGCT 59.771 33.333 13.32 0.00 46.25 3.91
3286 4998 7.362662 TCAAAGTGTAGATTCACTCATTTTGC 58.637 34.615 13.32 0.00 46.25 3.68
3287 4999 9.734620 TTTCAAAGTGTAGATTCACTCATTTTG 57.265 29.630 12.59 12.59 46.25 2.44
3292 5004 9.725019 ACATATTTCAAAGTGTAGATTCACTCA 57.275 29.630 0.00 0.00 46.25 3.41
3354 5066 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3355 5067 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3356 5068 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3357 5069 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3358 5070 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3359 5071 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3360 5072 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3361 5073 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3362 5074 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3363 5075 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3364 5076 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3365 5077 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3366 5078 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
3367 5079 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3368 5080 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3369 5081 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3370 5082 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3371 5083 3.525199 ACTAGTACTCCCTCCGTTCCTAA 59.475 47.826 0.00 0.00 0.00 2.69
3372 5084 3.118531 ACTAGTACTCCCTCCGTTCCTA 58.881 50.000 0.00 0.00 0.00 2.94
3373 5085 1.921748 ACTAGTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.00 0.00 3.36
3374 5086 2.433662 ACTAGTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
3375 5087 4.335037 CACTAACTAGTACTCCCTCCGTTC 59.665 50.000 0.00 0.00 34.13 3.95
3376 5088 4.268359 CACTAACTAGTACTCCCTCCGTT 58.732 47.826 0.00 0.00 34.13 4.44
3377 5089 3.371380 CCACTAACTAGTACTCCCTCCGT 60.371 52.174 0.00 0.00 34.13 4.69
3378 5090 3.212685 CCACTAACTAGTACTCCCTCCG 58.787 54.545 0.00 0.00 34.13 4.63
3379 5091 2.957680 GCCACTAACTAGTACTCCCTCC 59.042 54.545 0.00 0.00 34.13 4.30
3380 5092 3.629087 TGCCACTAACTAGTACTCCCTC 58.371 50.000 0.00 0.00 34.13 4.30
3381 5093 3.268856 TCTGCCACTAACTAGTACTCCCT 59.731 47.826 0.00 0.00 34.13 4.20
3382 5094 3.629087 TCTGCCACTAACTAGTACTCCC 58.371 50.000 0.00 0.00 34.13 4.30
3383 5095 4.271661 ACTCTGCCACTAACTAGTACTCC 58.728 47.826 0.00 0.00 34.13 3.85
3384 5096 6.016943 CCATACTCTGCCACTAACTAGTACTC 60.017 46.154 0.00 0.00 34.13 2.59
3385 5097 5.828859 CCATACTCTGCCACTAACTAGTACT 59.171 44.000 0.00 0.00 34.13 2.73
3386 5098 5.593502 ACCATACTCTGCCACTAACTAGTAC 59.406 44.000 0.00 0.00 34.13 2.73
3387 5099 5.763355 ACCATACTCTGCCACTAACTAGTA 58.237 41.667 0.00 0.00 34.13 1.82
3388 5100 4.611367 ACCATACTCTGCCACTAACTAGT 58.389 43.478 0.00 0.00 36.90 2.57
3389 5101 4.038162 GGACCATACTCTGCCACTAACTAG 59.962 50.000 0.00 0.00 0.00 2.57
3390 5102 3.958798 GGACCATACTCTGCCACTAACTA 59.041 47.826 0.00 0.00 0.00 2.24
3391 5103 2.766828 GGACCATACTCTGCCACTAACT 59.233 50.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.