Multiple sequence alignment - TraesCS6B01G439900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G439900 chr6B 100.000 4177 0 0 1 4177 705184828 705180652 0.000000e+00 7714.0
1 TraesCS6B01G439900 chr6B 87.509 1361 162 4 1882 3238 705316316 705314960 0.000000e+00 1565.0
2 TraesCS6B01G439900 chr6B 87.941 340 31 8 869 1202 705316637 705316302 3.910000e-105 392.0
3 TraesCS6B01G439900 chr6B 90.099 101 8 2 59 157 705317231 705317131 3.390000e-26 130.0
4 TraesCS6B01G439900 chr6B 87.719 57 6 1 3809 3865 574660373 574660318 9.690000e-07 65.8
5 TraesCS6B01G439900 chr6D 94.540 1392 73 1 1882 3273 462555359 462553971 0.000000e+00 2146.0
6 TraesCS6B01G439900 chr6D 87.830 1364 156 6 1882 3240 462614714 462613356 0.000000e+00 1591.0
7 TraesCS6B01G439900 chr6D 91.429 910 45 13 3270 4177 462553928 462553050 0.000000e+00 1218.0
8 TraesCS6B01G439900 chr6D 88.423 501 35 16 1 482 462556506 462556010 2.160000e-162 582.0
9 TraesCS6B01G439900 chr6D 92.818 362 21 3 600 961 462555991 462555635 1.720000e-143 520.0
10 TraesCS6B01G439900 chr6D 96.078 255 10 0 944 1198 462555602 462555348 2.320000e-112 416.0
11 TraesCS6B01G439900 chr6D 92.308 221 16 1 979 1198 462614923 462614703 3.140000e-81 313.0
12 TraesCS6B01G439900 chr6D 91.753 97 7 1 62 157 462616001 462615905 2.620000e-27 134.0
13 TraesCS6B01G439900 chr6D 87.931 58 5 1 3995 4050 79644322 79644265 2.700000e-07 67.6
14 TraesCS6B01G439900 chr6A 93.696 1396 81 2 1882 3273 609403097 609401705 0.000000e+00 2084.0
15 TraesCS6B01G439900 chr6A 87.500 1360 164 3 1882 3238 609427569 609426213 0.000000e+00 1565.0
16 TraesCS6B01G439900 chr6A 87.895 727 60 14 3471 4177 609399011 609398293 0.000000e+00 830.0
17 TraesCS6B01G439900 chr6A 92.669 532 32 4 673 1198 609403616 609403086 0.000000e+00 760.0
18 TraesCS6B01G439900 chr6A 91.971 411 27 5 91 496 609404080 609403671 4.680000e-159 571.0
19 TraesCS6B01G439900 chr6A 93.151 219 13 2 985 1202 609427772 609427555 1.870000e-83 320.0
20 TraesCS6B01G439900 chr6A 97.959 49 1 0 593 641 609403672 609403624 7.440000e-13 86.1
21 TraesCS6B01G439900 chr6A 89.474 57 6 0 3995 4051 614294706 614294650 5.790000e-09 73.1
22 TraesCS6B01G439900 chr2B 95.356 689 30 2 1199 1886 655138839 655138152 0.000000e+00 1094.0
23 TraesCS6B01G439900 chr2B 94.326 705 36 3 1190 1892 256355586 256354884 0.000000e+00 1077.0
24 TraesCS6B01G439900 chr2B 88.525 122 9 4 475 595 584118706 584118589 4.350000e-30 143.0
25 TraesCS6B01G439900 chr4B 95.058 688 34 0 1198 1885 66424919 66424232 0.000000e+00 1083.0
26 TraesCS6B01G439900 chr4B 95.051 687 32 2 1200 1885 77386575 77385890 0.000000e+00 1079.0
27 TraesCS6B01G439900 chr4B 94.783 690 33 2 1199 1886 400405384 400406072 0.000000e+00 1072.0
28 TraesCS6B01G439900 chr4B 94.175 103 3 3 492 594 612262004 612262103 2.010000e-33 154.0
29 TraesCS6B01G439900 chr5B 95.058 688 31 2 1199 1885 273993375 273994060 0.000000e+00 1079.0
30 TraesCS6B01G439900 chr5B 91.667 108 6 2 493 600 81177019 81177123 3.370000e-31 147.0
31 TraesCS6B01G439900 chr5B 91.429 105 9 0 493 597 70445017 70445121 1.210000e-30 145.0
32 TraesCS6B01G439900 chr1B 94.920 689 30 3 1197 1885 242629650 242630333 0.000000e+00 1074.0
33 TraesCS6B01G439900 chr1B 88.710 62 4 1 3992 4053 302758541 302758599 5.790000e-09 73.1
34 TraesCS6B01G439900 chr1B 89.091 55 3 1 3995 4049 302758593 302758542 9.690000e-07 65.8
35 TraesCS6B01G439900 chr3B 94.905 687 29 2 1199 1885 599061181 599060501 0.000000e+00 1070.0
36 TraesCS6B01G439900 chr7A 94.645 691 33 2 1195 1885 6088685 6089371 0.000000e+00 1068.0
37 TraesCS6B01G439900 chr7A 93.333 105 7 0 493 597 619629673 619629569 5.590000e-34 156.0
38 TraesCS6B01G439900 chr7A 92.381 105 8 0 493 597 80575128 80575232 2.600000e-32 150.0
39 TraesCS6B01G439900 chr7A 91.429 105 9 0 493 597 85133115 85133011 1.210000e-30 145.0
40 TraesCS6B01G439900 chr7A 88.136 59 7 0 1140 1198 495536873 495536931 2.080000e-08 71.3
41 TraesCS6B01G439900 chr3D 89.871 622 42 11 593 1198 144479455 144478839 0.000000e+00 780.0
42 TraesCS6B01G439900 chr3D 88.076 369 40 2 1882 2246 144478850 144478482 6.410000e-118 435.0
43 TraesCS6B01G439900 chrUn 87.952 415 45 3 2013 2423 476451865 476451452 6.280000e-133 484.0
44 TraesCS6B01G439900 chr3A 93.269 104 7 0 494 597 681052982 681053085 2.010000e-33 154.0
45 TraesCS6B01G439900 chr3A 92.593 54 1 1 3995 4048 170234685 170234635 1.610000e-09 75.0
46 TraesCS6B01G439900 chr2D 93.204 103 4 1 495 597 30406648 30406747 9.360000e-32 148.0
47 TraesCS6B01G439900 chr4A 85.333 75 8 3 3977 4049 740378482 740378555 1.610000e-09 75.0
48 TraesCS6B01G439900 chr5D 87.302 63 5 3 3722 3781 311371327 311371265 7.490000e-08 69.4
49 TraesCS6B01G439900 chr5D 100.000 32 0 0 3743 3774 480854572 480854541 4.510000e-05 60.2
50 TraesCS6B01G439900 chr1D 85.484 62 7 2 3995 4055 206307984 206307924 3.490000e-06 63.9
51 TraesCS6B01G439900 chr1A 97.059 34 1 0 3740 3773 28367290 28367323 1.620000e-04 58.4
52 TraesCS6B01G439900 chr1A 94.444 36 2 0 3738 3773 28373047 28373082 5.830000e-04 56.5
53 TraesCS6B01G439900 chr1A 94.444 36 2 0 3738 3773 28382681 28382716 5.830000e-04 56.5
54 TraesCS6B01G439900 chr7B 100.000 30 0 0 3743 3772 556497526 556497497 5.830000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G439900 chr6B 705180652 705184828 4176 True 7714.000000 7714 100.000000 1 4177 1 chr6B.!!$R2 4176
1 TraesCS6B01G439900 chr6B 705314960 705317231 2271 True 695.666667 1565 88.516333 59 3238 3 chr6B.!!$R3 3179
2 TraesCS6B01G439900 chr6D 462553050 462556506 3456 True 976.400000 2146 92.657600 1 4177 5 chr6D.!!$R2 4176
3 TraesCS6B01G439900 chr6D 462613356 462616001 2645 True 679.333333 1591 90.630333 62 3240 3 chr6D.!!$R3 3178
4 TraesCS6B01G439900 chr6A 609426213 609427772 1559 True 942.500000 1565 90.325500 985 3238 2 chr6A.!!$R3 2253
5 TraesCS6B01G439900 chr6A 609398293 609404080 5787 True 866.220000 2084 92.838000 91 4177 5 chr6A.!!$R2 4086
6 TraesCS6B01G439900 chr2B 655138152 655138839 687 True 1094.000000 1094 95.356000 1199 1886 1 chr2B.!!$R3 687
7 TraesCS6B01G439900 chr2B 256354884 256355586 702 True 1077.000000 1077 94.326000 1190 1892 1 chr2B.!!$R1 702
8 TraesCS6B01G439900 chr4B 66424232 66424919 687 True 1083.000000 1083 95.058000 1198 1885 1 chr4B.!!$R1 687
9 TraesCS6B01G439900 chr4B 77385890 77386575 685 True 1079.000000 1079 95.051000 1200 1885 1 chr4B.!!$R2 685
10 TraesCS6B01G439900 chr4B 400405384 400406072 688 False 1072.000000 1072 94.783000 1199 1886 1 chr4B.!!$F1 687
11 TraesCS6B01G439900 chr5B 273993375 273994060 685 False 1079.000000 1079 95.058000 1199 1885 1 chr5B.!!$F3 686
12 TraesCS6B01G439900 chr1B 242629650 242630333 683 False 1074.000000 1074 94.920000 1197 1885 1 chr1B.!!$F1 688
13 TraesCS6B01G439900 chr3B 599060501 599061181 680 True 1070.000000 1070 94.905000 1199 1885 1 chr3B.!!$R1 686
14 TraesCS6B01G439900 chr7A 6088685 6089371 686 False 1068.000000 1068 94.645000 1195 1885 1 chr7A.!!$F1 690
15 TraesCS6B01G439900 chr3D 144478482 144479455 973 True 607.500000 780 88.973500 593 2246 2 chr3D.!!$R1 1653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 920 0.320946 GCAAAAGCATGCCATGTGGT 60.321 50.0 15.66 0.0 40.49 4.16 F
1374 1803 0.179092 CCAAACCCGACCCGATAGTC 60.179 60.0 0.00 0.0 0.00 2.59 F
2678 3120 0.108804 TCGGAAGCACGAATCCAGAC 60.109 55.0 0.00 0.0 40.34 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2294 2736 0.256752 TGGTGCTGATGATGGGAAGG 59.743 55.0 0.0 0.0 0.0 3.46 R
2711 3153 0.829333 CTCCCATCAGCACAGCTAGT 59.171 55.0 0.0 0.0 36.4 2.57 R
3645 6605 6.239217 TGGTGAGCAGAAACTATATGTCAT 57.761 37.5 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.510038 AATCAAATCCACTTGACTGCAC 57.490 40.909 0.00 0.00 38.12 4.57
125 136 1.996898 TCTGCTACGTTTAACATGCGG 59.003 47.619 0.00 1.67 0.00 5.69
152 163 7.913297 GCTACGCAAAGAACAAATTTATGGATA 59.087 33.333 0.00 0.00 0.00 2.59
180 211 6.677913 AGAAATCCACGAATTTGTTAACCTG 58.322 36.000 2.48 0.00 0.00 4.00
182 213 2.224549 TCCACGAATTTGTTAACCTGCG 59.775 45.455 2.48 1.15 0.00 5.18
183 214 2.031508 CCACGAATTTGTTAACCTGCGT 60.032 45.455 2.48 1.79 0.00 5.24
328 381 9.806203 TTCATATGTTCATGTGGATCATTTTTC 57.194 29.630 1.90 0.00 37.22 2.29
330 383 9.244799 CATATGTTCATGTGGATCATTTTTCAG 57.755 33.333 0.00 0.00 37.22 3.02
331 384 6.897706 TGTTCATGTGGATCATTTTTCAGA 57.102 33.333 0.00 0.00 34.09 3.27
332 385 7.470935 TGTTCATGTGGATCATTTTTCAGAT 57.529 32.000 0.00 0.00 34.09 2.90
333 386 7.898918 TGTTCATGTGGATCATTTTTCAGATT 58.101 30.769 0.00 0.00 34.09 2.40
358 411 5.579384 TTTTGAAGCTTGCGATTTTGATG 57.421 34.783 2.10 0.00 0.00 3.07
363 416 4.510038 AGCTTGCGATTTTGATGTTCTT 57.490 36.364 0.00 0.00 0.00 2.52
413 467 4.042684 AGGAGCCCCATCTCTAAAATGATC 59.957 45.833 0.00 0.00 33.70 2.92
479 534 9.884465 CGGTAAGAATTTCAAAGATATTGATCC 57.116 33.333 0.00 0.00 31.81 3.36
508 563 3.305720 TGGTACATACTCCATCTGTCCC 58.694 50.000 0.00 0.00 0.00 4.46
509 564 3.305720 GGTACATACTCCATCTGTCCCA 58.694 50.000 0.00 0.00 0.00 4.37
510 565 3.709653 GGTACATACTCCATCTGTCCCAA 59.290 47.826 0.00 0.00 0.00 4.12
511 566 4.163458 GGTACATACTCCATCTGTCCCAAA 59.837 45.833 0.00 0.00 0.00 3.28
512 567 4.927267 ACATACTCCATCTGTCCCAAAA 57.073 40.909 0.00 0.00 0.00 2.44
513 568 5.456921 ACATACTCCATCTGTCCCAAAAT 57.543 39.130 0.00 0.00 0.00 1.82
514 569 6.575244 ACATACTCCATCTGTCCCAAAATA 57.425 37.500 0.00 0.00 0.00 1.40
515 570 6.969043 ACATACTCCATCTGTCCCAAAATAA 58.031 36.000 0.00 0.00 0.00 1.40
516 571 6.828785 ACATACTCCATCTGTCCCAAAATAAC 59.171 38.462 0.00 0.00 0.00 1.89
517 572 5.520748 ACTCCATCTGTCCCAAAATAACT 57.479 39.130 0.00 0.00 0.00 2.24
518 573 5.256474 ACTCCATCTGTCCCAAAATAACTG 58.744 41.667 0.00 0.00 0.00 3.16
519 574 5.222130 ACTCCATCTGTCCCAAAATAACTGT 60.222 40.000 0.00 0.00 0.00 3.55
520 575 5.253330 TCCATCTGTCCCAAAATAACTGTC 58.747 41.667 0.00 0.00 0.00 3.51
521 576 5.014123 TCCATCTGTCCCAAAATAACTGTCT 59.986 40.000 0.00 0.00 0.00 3.41
522 577 5.355350 CCATCTGTCCCAAAATAACTGTCTC 59.645 44.000 0.00 0.00 0.00 3.36
523 578 5.560722 TCTGTCCCAAAATAACTGTCTCA 57.439 39.130 0.00 0.00 0.00 3.27
524 579 5.935945 TCTGTCCCAAAATAACTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
525 580 5.997746 TCTGTCCCAAAATAACTGTCTCAAG 59.002 40.000 0.00 0.00 0.00 3.02
526 581 4.518970 TGTCCCAAAATAACTGTCTCAAGC 59.481 41.667 0.00 0.00 0.00 4.01
527 582 4.762251 GTCCCAAAATAACTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
528 583 5.241728 GTCCCAAAATAACTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
529 584 6.430000 GTCCCAAAATAACTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
530 585 6.655003 TCCCAAAATAACTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
531 586 6.431234 CCCAAAATAACTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
532 587 7.606456 CCCAAAATAACTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
533 588 8.660373 CCAAAATAACTGTCTCAAGCTTAGTAG 58.340 37.037 0.00 0.00 0.00 2.57
534 589 9.209175 CAAAATAACTGTCTCAAGCTTAGTAGT 57.791 33.333 0.00 4.68 0.00 2.73
536 591 9.857957 AAATAACTGTCTCAAGCTTAGTAGTAC 57.142 33.333 0.00 0.00 0.00 2.73
537 592 6.896021 AACTGTCTCAAGCTTAGTAGTACA 57.104 37.500 0.00 3.84 0.00 2.90
538 593 6.896021 ACTGTCTCAAGCTTAGTAGTACAA 57.104 37.500 0.00 0.00 0.00 2.41
539 594 6.679843 ACTGTCTCAAGCTTAGTAGTACAAC 58.320 40.000 0.00 0.00 0.00 3.32
540 595 6.490721 ACTGTCTCAAGCTTAGTAGTACAACT 59.509 38.462 0.00 0.00 0.00 3.16
541 596 7.014422 ACTGTCTCAAGCTTAGTAGTACAACTT 59.986 37.037 0.00 0.00 0.00 2.66
542 597 7.723324 TGTCTCAAGCTTAGTAGTACAACTTT 58.277 34.615 0.00 0.00 0.00 2.66
543 598 7.652105 TGTCTCAAGCTTAGTAGTACAACTTTG 59.348 37.037 0.00 1.44 0.00 2.77
544 599 7.652507 GTCTCAAGCTTAGTAGTACAACTTTGT 59.347 37.037 0.00 0.00 44.86 2.83
545 600 8.853126 TCTCAAGCTTAGTAGTACAACTTTGTA 58.147 33.333 0.00 0.00 42.35 2.41
569 624 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
570 625 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
571 626 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
572 627 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
573 628 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
574 629 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
575 630 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
576 631 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
577 632 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
584 639 9.370126 CAAAGTTGAGACACTTATTTTAAGACG 57.630 33.333 1.47 0.00 35.87 4.18
585 640 7.653767 AGTTGAGACACTTATTTTAAGACGG 57.346 36.000 1.47 0.00 0.00 4.79
586 641 7.439381 AGTTGAGACACTTATTTTAAGACGGA 58.561 34.615 1.47 0.00 0.00 4.69
587 642 7.599245 AGTTGAGACACTTATTTTAAGACGGAG 59.401 37.037 1.47 0.00 0.00 4.63
588 643 6.395629 TGAGACACTTATTTTAAGACGGAGG 58.604 40.000 1.47 0.00 0.00 4.30
589 644 5.731591 AGACACTTATTTTAAGACGGAGGG 58.268 41.667 1.47 0.00 0.00 4.30
590 645 5.482878 AGACACTTATTTTAAGACGGAGGGA 59.517 40.000 1.47 0.00 0.00 4.20
591 646 5.731591 ACACTTATTTTAAGACGGAGGGAG 58.268 41.667 1.47 0.00 0.00 4.30
647 702 4.814234 TCTCGTGTGTTAATTTCTTGCACT 59.186 37.500 0.00 0.00 0.00 4.40
714 769 3.551846 TCAACTTTCAACCAGTCCCTTC 58.448 45.455 0.00 0.00 0.00 3.46
718 773 1.518367 TTCAACCAGTCCCTTCCACT 58.482 50.000 0.00 0.00 0.00 4.00
730 794 1.561542 CCTTCCACTGGGAGCAATACT 59.438 52.381 0.00 0.00 46.01 2.12
830 902 4.278170 CCAATCACTTTCACCAGTAGCAAA 59.722 41.667 0.00 0.00 0.00 3.68
844 919 2.462503 GCAAAAGCATGCCATGTGG 58.537 52.632 15.66 0.41 40.49 4.17
845 920 0.320946 GCAAAAGCATGCCATGTGGT 60.321 50.000 15.66 0.00 40.49 4.16
868 943 6.921307 GGTTCACACGGAATTGTAAGATTTTT 59.079 34.615 0.00 0.00 37.93 1.94
1014 1443 6.065976 ACATTGAAGATGGAGATGGTTGTA 57.934 37.500 0.00 0.00 0.00 2.41
1100 1529 4.275443 CCATGCAAATCTAGAGAAGAAGGC 59.725 45.833 0.00 0.00 37.89 4.35
1182 1611 5.118990 CGATACATCACCAACTCCAGAATT 58.881 41.667 0.00 0.00 0.00 2.17
1374 1803 0.179092 CCAAACCCGACCCGATAGTC 60.179 60.000 0.00 0.00 0.00 2.59
1412 1844 0.913934 TCTGCTATCCTTGCCCCACA 60.914 55.000 0.00 0.00 0.00 4.17
1418 1850 0.680921 ATCCTTGCCCCACATTCACG 60.681 55.000 0.00 0.00 0.00 4.35
1532 1964 2.502538 CCCCTCCGTAACATACTCCAAA 59.497 50.000 0.00 0.00 0.00 3.28
1537 1969 3.583966 TCCGTAACATACTCCAAAACCCT 59.416 43.478 0.00 0.00 0.00 4.34
1542 1974 4.463050 ACATACTCCAAAACCCTTTCCA 57.537 40.909 0.00 0.00 0.00 3.53
1595 2027 8.659491 TCGTCATTCTCATCTGTTAGAAAAATG 58.341 33.333 0.00 0.00 35.47 2.32
1683 2115 6.656693 AGGTGAAGAATGGAAGAGTTTATGTG 59.343 38.462 0.00 0.00 0.00 3.21
1784 2216 4.648762 TGGACATGGACACAATTTTTCACT 59.351 37.500 0.00 0.00 0.00 3.41
1824 2259 2.783135 GGGCAAAGACTGTCTTCATGA 58.217 47.619 22.24 0.00 35.27 3.07
1836 2271 9.097946 AGACTGTCTTCATGAATATGGATATGA 57.902 33.333 8.96 0.00 34.97 2.15
1868 2303 2.043980 CAACCCGATCCAAACCCGG 61.044 63.158 0.00 0.00 42.64 5.73
1870 2305 4.109675 CCCGATCCAAACCCGGCT 62.110 66.667 0.00 0.00 41.74 5.52
1888 2323 2.305009 GCTCATTGCCATCCTTAAGCT 58.695 47.619 0.00 0.00 35.15 3.74
1898 2333 3.465871 CATCCTTAAGCTCAAGAGGCTC 58.534 50.000 6.34 6.34 39.30 4.70
1951 2390 2.916269 TGGACACCATCAAATACAGGGA 59.084 45.455 0.00 0.00 0.00 4.20
2006 2445 1.246056 GCAGCTCCAATGCCTTGTCA 61.246 55.000 0.91 0.00 37.73 3.58
2034 2473 6.685828 CGTGAATTCTATCAACTGCTTTCATG 59.314 38.462 7.05 0.00 0.00 3.07
2038 2477 3.943381 TCTATCAACTGCTTTCATGCCAG 59.057 43.478 0.00 0.00 0.00 4.85
2058 2497 5.675575 GCCAGTTCTATCAACTGCTTTCATG 60.676 44.000 8.68 0.00 44.62 3.07
2115 2557 4.264460 AGTGCACTGGAGAACTTAGAAG 57.736 45.455 20.97 0.00 0.00 2.85
2198 2640 2.185387 AGCCCTTATGACACGTACCTT 58.815 47.619 0.00 0.00 0.00 3.50
2225 2667 4.154195 ACTGATAACTTCATGTTTGGACGC 59.846 41.667 0.00 0.00 39.89 5.19
2234 2676 2.163818 TGTTTGGACGCCAAGTAGAG 57.836 50.000 10.48 0.00 44.84 2.43
2235 2677 0.796927 GTTTGGACGCCAAGTAGAGC 59.203 55.000 10.48 0.00 44.84 4.09
2246 2688 3.305608 GCCAAGTAGAGCAACAGCAAATT 60.306 43.478 0.00 0.00 0.00 1.82
2282 2724 6.014327 TGCTGCAAGAAAATATTCCTCCTTTT 60.014 34.615 0.00 0.00 36.12 2.27
2294 2736 1.882623 CCTCCTTTTGCTCCAACTGTC 59.117 52.381 0.00 0.00 0.00 3.51
2342 2784 2.413837 GGCAAGAAAACTCTAGTCGCA 58.586 47.619 0.00 0.00 0.00 5.10
2381 2823 5.646606 GATAGAGTTCAGTCACACTTCTCC 58.353 45.833 0.00 0.00 0.00 3.71
2384 2826 3.300388 AGTTCAGTCACACTTCTCCTCA 58.700 45.455 0.00 0.00 0.00 3.86
2393 2835 1.396301 CACTTCTCCTCAATCTTGCGC 59.604 52.381 0.00 0.00 0.00 6.09
2423 2865 3.141398 AGAAAGCATTCGCAGAACTGAA 58.859 40.909 5.97 0.00 45.90 3.02
2425 2867 2.175878 AGCATTCGCAGAACTGAACT 57.824 45.000 5.97 0.00 45.90 3.01
2427 2869 2.481952 AGCATTCGCAGAACTGAACTTC 59.518 45.455 5.97 0.00 45.90 3.01
2428 2870 2.224079 GCATTCGCAGAACTGAACTTCA 59.776 45.455 5.97 0.00 45.90 3.02
2429 2871 3.303990 GCATTCGCAGAACTGAACTTCAA 60.304 43.478 5.97 0.00 45.90 2.69
2430 2872 3.944422 TTCGCAGAACTGAACTTCAAC 57.056 42.857 5.97 0.00 45.90 3.18
2431 2873 2.899976 TCGCAGAACTGAACTTCAACA 58.100 42.857 5.97 0.00 0.00 3.33
2434 2876 3.309682 CGCAGAACTGAACTTCAACAAGA 59.690 43.478 5.97 0.00 33.34 3.02
2441 2883 9.342308 AGAACTGAACTTCAACAAGATTTCATA 57.658 29.630 0.00 0.00 31.72 2.15
2517 2959 4.455877 AGAGTTGGCAAAAGTTCTATTCCG 59.544 41.667 0.00 0.00 0.00 4.30
2573 3015 8.116651 TCATAGTCATAAGTAGGATTGAGAGC 57.883 38.462 0.00 0.00 0.00 4.09
2595 3037 0.674534 GTCGAGGCTCGGAACCATAT 59.325 55.000 33.93 0.00 40.88 1.78
2600 3042 1.148273 GCTCGGAACCATATGGCCA 59.852 57.895 22.18 8.56 39.32 5.36
2669 3111 1.135315 CCTTGCATTCGGAAGCACG 59.865 57.895 12.33 11.01 41.05 5.34
2678 3120 0.108804 TCGGAAGCACGAATCCAGAC 60.109 55.000 0.00 0.00 40.34 3.51
2682 3124 2.223735 GGAAGCACGAATCCAGACGATA 60.224 50.000 0.00 0.00 35.71 2.92
2700 3142 1.809133 TAACCCCCGGCTATCATTGA 58.191 50.000 0.00 0.00 0.00 2.57
2721 3163 2.074124 GCGAGTGAACTAGCTGTGC 58.926 57.895 8.14 0.00 40.70 4.57
2807 3249 2.002586 CAGTTCTGGCAACGTATCCTG 58.997 52.381 7.42 6.97 42.51 3.86
2818 3260 4.449743 GCAACGTATCCTGAACAAGTACAA 59.550 41.667 0.00 0.00 0.00 2.41
2922 3364 1.030457 ACTTGTGTCGTCGACCTCTT 58.970 50.000 22.05 0.66 0.00 2.85
3273 3719 5.826601 TGACATAATTAAATCGCCAAGCA 57.173 34.783 0.00 0.00 0.00 3.91
3275 3721 7.503521 TGACATAATTAAATCGCCAAGCATA 57.496 32.000 0.00 0.00 0.00 3.14
3344 4213 0.250945 TATTGTTGGCAGTTGGCGGA 60.251 50.000 1.08 0.00 46.16 5.54
3354 4223 0.603569 AGTTGGCGGACAGTCTACAG 59.396 55.000 0.00 0.00 32.68 2.74
3430 4299 8.345565 GTCAAAACAAATAACTCATGTCACTCT 58.654 33.333 0.00 0.00 0.00 3.24
3440 4310 2.093500 TCATGTCACTCTGGGGAAATCG 60.093 50.000 0.00 0.00 0.00 3.34
3459 4329 2.224549 TCGGTCAATTTTTACACCTGCG 59.775 45.455 0.00 0.00 0.00 5.18
3464 4334 3.189702 TCAATTTTTACACCTGCGGCTAC 59.810 43.478 0.00 0.00 0.00 3.58
3583 6542 9.371136 TCATAAAAATGTAAAAAGTTGTGCACA 57.629 25.926 17.42 17.42 0.00 4.57
3590 6549 7.938563 TGTAAAAAGTTGTGCACATAATTCC 57.061 32.000 22.39 5.73 0.00 3.01
3592 6551 8.851145 TGTAAAAAGTTGTGCACATAATTCCTA 58.149 29.630 22.39 0.00 0.00 2.94
3732 6715 7.329717 GGCCATCGTGTATTTAAAAATTGTTCA 59.670 33.333 0.00 0.00 0.00 3.18
3733 6716 8.704234 GCCATCGTGTATTTAAAAATTGTTCAA 58.296 29.630 0.00 0.00 0.00 2.69
3737 6720 8.747666 TCGTGTATTTAAAAATTGTTCAAGTGC 58.252 29.630 0.00 0.00 0.00 4.40
3738 6721 8.535592 CGTGTATTTAAAAATTGTTCAAGTGCA 58.464 29.630 0.00 0.00 0.00 4.57
3872 6855 7.775120 ACTCAACAAAATGTTCAATGTCTTCT 58.225 30.769 0.00 0.00 38.77 2.85
4054 7053 3.090037 TGAGACGGAGGGAGTAGAAAAG 58.910 50.000 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 56 1.603455 CCTCCCTCGCCAAGCAAAA 60.603 57.895 0.00 0.00 0.00 2.44
47 57 2.034066 CCTCCCTCGCCAAGCAAA 59.966 61.111 0.00 0.00 0.00 3.68
84 94 4.343239 AGAGAAGCAAGGAAGCAAAAATGT 59.657 37.500 0.00 0.00 36.85 2.71
152 163 9.634163 GGTTAACAAATTCGTGGATTTCTTAAT 57.366 29.630 8.10 0.00 28.91 1.40
308 361 6.897706 TCTGAAAAATGATCCACATGAACA 57.102 33.333 0.00 0.00 39.39 3.18
382 436 1.856873 ATGGGGCTCCTTTGGGTCA 60.857 57.895 3.07 0.00 0.00 4.02
426 480 9.653287 TCTCCTGTTTTATTGACAATAGTAGTG 57.347 33.333 7.89 0.00 0.00 2.74
479 534 6.537660 CAGATGGAGTATGTACCATGCATATG 59.462 42.308 0.00 0.00 45.41 1.78
494 549 6.012858 ACAGTTATTTTGGGACAGATGGAGTA 60.013 38.462 0.00 0.00 42.39 2.59
495 550 5.222130 ACAGTTATTTTGGGACAGATGGAGT 60.222 40.000 0.00 0.00 42.39 3.85
496 551 5.256474 ACAGTTATTTTGGGACAGATGGAG 58.744 41.667 0.00 0.00 42.39 3.86
497 552 5.014123 AGACAGTTATTTTGGGACAGATGGA 59.986 40.000 0.00 0.00 42.39 3.41
498 553 5.256474 AGACAGTTATTTTGGGACAGATGG 58.744 41.667 0.00 0.00 42.39 3.51
499 554 5.939883 TGAGACAGTTATTTTGGGACAGATG 59.060 40.000 0.00 0.00 42.39 2.90
500 555 6.126863 TGAGACAGTTATTTTGGGACAGAT 57.873 37.500 0.00 0.00 42.39 2.90
501 556 5.560722 TGAGACAGTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
502 557 5.335191 GCTTGAGACAGTTATTTTGGGACAG 60.335 44.000 0.00 0.00 42.39 3.51
503 558 4.518970 GCTTGAGACAGTTATTTTGGGACA 59.481 41.667 0.00 0.00 0.00 4.02
504 559 4.762251 AGCTTGAGACAGTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
505 560 4.985538 AGCTTGAGACAGTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
506 561 5.712152 AAGCTTGAGACAGTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
507 562 7.440523 ACTAAGCTTGAGACAGTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
508 563 9.209175 ACTACTAAGCTTGAGACAGTTATTTTG 57.791 33.333 9.86 0.00 0.00 2.44
510 565 9.857957 GTACTACTAAGCTTGAGACAGTTATTT 57.142 33.333 9.86 0.00 0.00 1.40
511 566 9.021807 TGTACTACTAAGCTTGAGACAGTTATT 57.978 33.333 9.86 0.00 0.00 1.40
512 567 8.577048 TGTACTACTAAGCTTGAGACAGTTAT 57.423 34.615 9.86 0.00 0.00 1.89
513 568 7.991084 TGTACTACTAAGCTTGAGACAGTTA 57.009 36.000 9.86 0.00 0.00 2.24
514 569 6.896021 TGTACTACTAAGCTTGAGACAGTT 57.104 37.500 9.86 0.00 0.00 3.16
515 570 6.490721 AGTTGTACTACTAAGCTTGAGACAGT 59.509 38.462 9.86 6.64 0.00 3.55
516 571 6.915349 AGTTGTACTACTAAGCTTGAGACAG 58.085 40.000 9.86 0.00 0.00 3.51
517 572 6.896021 AGTTGTACTACTAAGCTTGAGACA 57.104 37.500 9.86 7.41 0.00 3.41
518 573 7.652507 ACAAAGTTGTACTACTAAGCTTGAGAC 59.347 37.037 19.57 5.21 40.16 3.36
519 574 7.723324 ACAAAGTTGTACTACTAAGCTTGAGA 58.277 34.615 19.57 0.00 40.16 3.27
520 575 7.948278 ACAAAGTTGTACTACTAAGCTTGAG 57.052 36.000 19.57 6.27 40.16 3.02
544 599 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
546 601 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
547 602 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
548 603 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
549 604 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
550 605 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
551 606 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
558 613 9.370126 CGTCTTAAAATAAGTGTCTCAACTTTG 57.630 33.333 0.00 0.00 40.77 2.77
559 614 8.557029 CCGTCTTAAAATAAGTGTCTCAACTTT 58.443 33.333 0.00 0.00 40.77 2.66
560 615 7.929785 TCCGTCTTAAAATAAGTGTCTCAACTT 59.070 33.333 0.00 0.00 42.89 2.66
561 616 7.439381 TCCGTCTTAAAATAAGTGTCTCAACT 58.561 34.615 0.00 0.00 0.00 3.16
562 617 7.148623 CCTCCGTCTTAAAATAAGTGTCTCAAC 60.149 40.741 0.00 0.00 0.00 3.18
563 618 6.872020 CCTCCGTCTTAAAATAAGTGTCTCAA 59.128 38.462 0.00 0.00 0.00 3.02
564 619 6.395629 CCTCCGTCTTAAAATAAGTGTCTCA 58.604 40.000 0.00 0.00 0.00 3.27
565 620 5.811100 CCCTCCGTCTTAAAATAAGTGTCTC 59.189 44.000 0.00 0.00 0.00 3.36
566 621 5.482878 TCCCTCCGTCTTAAAATAAGTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
567 622 5.727434 TCCCTCCGTCTTAAAATAAGTGTC 58.273 41.667 0.00 0.00 0.00 3.67
568 623 5.247792 ACTCCCTCCGTCTTAAAATAAGTGT 59.752 40.000 0.00 0.00 0.00 3.55
569 624 5.731591 ACTCCCTCCGTCTTAAAATAAGTG 58.268 41.667 0.00 0.00 0.00 3.16
570 625 7.672122 ATACTCCCTCCGTCTTAAAATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
571 626 8.827677 CAAATACTCCCTCCGTCTTAAAATAAG 58.172 37.037 0.00 0.00 0.00 1.73
572 627 8.323567 ACAAATACTCCCTCCGTCTTAAAATAA 58.676 33.333 0.00 0.00 0.00 1.40
573 628 7.767198 CACAAATACTCCCTCCGTCTTAAAATA 59.233 37.037 0.00 0.00 0.00 1.40
574 629 6.598064 CACAAATACTCCCTCCGTCTTAAAAT 59.402 38.462 0.00 0.00 0.00 1.82
575 630 5.935789 CACAAATACTCCCTCCGTCTTAAAA 59.064 40.000 0.00 0.00 0.00 1.52
576 631 5.012354 ACACAAATACTCCCTCCGTCTTAAA 59.988 40.000 0.00 0.00 0.00 1.52
577 632 4.529377 ACACAAATACTCCCTCCGTCTTAA 59.471 41.667 0.00 0.00 0.00 1.85
578 633 4.091549 ACACAAATACTCCCTCCGTCTTA 58.908 43.478 0.00 0.00 0.00 2.10
579 634 2.904434 ACACAAATACTCCCTCCGTCTT 59.096 45.455 0.00 0.00 0.00 3.01
580 635 2.537143 ACACAAATACTCCCTCCGTCT 58.463 47.619 0.00 0.00 0.00 4.18
581 636 4.667519 ATACACAAATACTCCCTCCGTC 57.332 45.455 0.00 0.00 0.00 4.79
582 637 5.189145 AGAAATACACAAATACTCCCTCCGT 59.811 40.000 0.00 0.00 0.00 4.69
583 638 5.671493 AGAAATACACAAATACTCCCTCCG 58.329 41.667 0.00 0.00 0.00 4.63
584 639 9.057089 CATAAGAAATACACAAATACTCCCTCC 57.943 37.037 0.00 0.00 0.00 4.30
585 640 9.614792 ACATAAGAAATACACAAATACTCCCTC 57.385 33.333 0.00 0.00 0.00 4.30
586 641 9.396022 CACATAAGAAATACACAAATACTCCCT 57.604 33.333 0.00 0.00 0.00 4.20
587 642 8.621286 CCACATAAGAAATACACAAATACTCCC 58.379 37.037 0.00 0.00 0.00 4.30
588 643 9.391006 TCCACATAAGAAATACACAAATACTCC 57.609 33.333 0.00 0.00 0.00 3.85
647 702 0.975135 CCATGGTGATTTGTTGGGCA 59.025 50.000 2.57 0.00 0.00 5.36
720 775 6.649449 CTGAACTACAGCCAAGTATTGCTCC 61.649 48.000 0.00 0.00 40.31 4.70
730 794 1.429930 TCCACCTGAACTACAGCCAA 58.570 50.000 0.00 0.00 44.52 4.52
830 902 0.604578 GTGAACCACATGGCATGCTT 59.395 50.000 26.70 15.26 39.32 3.91
843 918 5.622770 AATCTTACAATTCCGTGTGAACC 57.377 39.130 0.00 0.00 35.31 3.62
844 919 7.434013 ACAAAAATCTTACAATTCCGTGTGAAC 59.566 33.333 0.00 0.00 35.31 3.18
845 920 7.484975 ACAAAAATCTTACAATTCCGTGTGAA 58.515 30.769 0.00 0.00 37.38 3.18
868 943 3.181454 GGGTTGGTTGAGAGAGAAAGACA 60.181 47.826 0.00 0.00 0.00 3.41
1100 1529 1.069227 GCAGTTGTTGTAGCCTTTCCG 60.069 52.381 0.00 0.00 0.00 4.30
1532 1964 9.560860 AAGGAGATAAAAATAATGGAAAGGGTT 57.439 29.630 0.00 0.00 0.00 4.11
1595 2027 7.769044 TCCAGTAACAACCTAAGATCATTTAGC 59.231 37.037 0.00 0.00 30.84 3.09
1701 2133 5.839063 TGGGTCCTCTCGAGACATATAAATT 59.161 40.000 12.08 0.00 0.00 1.82
1836 2271 6.379703 TGGATCGGGTTGAACAATATCAAATT 59.620 34.615 0.00 0.00 40.76 1.82
1868 2303 2.292845 GAGCTTAAGGATGGCAATGAGC 59.707 50.000 4.29 0.00 44.65 4.26
1870 2305 3.650281 TGAGCTTAAGGATGGCAATGA 57.350 42.857 4.29 0.00 0.00 2.57
1888 2323 3.452786 CCTCCGCGAGCCTCTTGA 61.453 66.667 8.23 0.00 0.00 3.02
1898 2333 3.673956 TTGGTACATGGCCTCCGCG 62.674 63.158 3.32 0.00 39.30 6.46
1951 2390 1.905354 GCCCTTGAGCTGCAAAGGT 60.905 57.895 24.03 0.00 39.77 3.50
2006 2445 5.078411 AGCAGTTGATAGAATTCACGAGT 57.922 39.130 8.44 0.00 0.00 4.18
2034 2473 3.753272 TGAAAGCAGTTGATAGAACTGGC 59.247 43.478 14.65 8.22 45.72 4.85
2038 2477 4.156556 TGGCATGAAAGCAGTTGATAGAAC 59.843 41.667 0.00 0.00 35.83 3.01
2058 2497 2.990066 ATTGTAGTGCTCCTAGTGGC 57.010 50.000 0.00 0.00 0.00 5.01
2115 2557 4.009675 TCTGTCATGTTAGAAACCATGGC 58.990 43.478 13.04 0.00 0.00 4.40
2198 2640 7.095397 CGTCCAAACATGAAGTTATCAGTGTAA 60.095 37.037 0.00 0.00 42.53 2.41
2225 2667 4.510038 AATTTGCTGTTGCTCTACTTGG 57.490 40.909 0.00 0.00 40.48 3.61
2234 2676 6.357198 CAAAACACTCATAATTTGCTGTTGC 58.643 36.000 0.00 0.00 40.20 4.17
2246 2688 5.512753 TTTCTTGCAGCAAAACACTCATA 57.487 34.783 9.65 0.00 0.00 2.15
2282 2724 1.059584 TGGGAAGGACAGTTGGAGCA 61.060 55.000 0.00 0.00 0.00 4.26
2294 2736 0.256752 TGGTGCTGATGATGGGAAGG 59.743 55.000 0.00 0.00 0.00 3.46
2342 2784 7.439955 TGAACTCTATCGTTGTTACAAACATGT 59.560 33.333 0.00 0.00 41.79 3.21
2381 2823 1.065102 CCATTCAGGCGCAAGATTGAG 59.935 52.381 10.83 4.02 43.02 3.02
2384 2826 1.065199 TCTCCATTCAGGCGCAAGATT 60.065 47.619 10.83 0.00 37.29 2.40
2393 2835 2.223433 GCGAATGCTTTCTCCATTCAGG 60.223 50.000 10.29 1.48 45.48 3.86
2423 2865 6.006449 AGCTGGTATGAAATCTTGTTGAAGT 58.994 36.000 0.00 0.00 0.00 3.01
2425 2867 5.183713 CCAGCTGGTATGAAATCTTGTTGAA 59.816 40.000 25.53 0.00 0.00 2.69
2427 2869 4.142315 CCCAGCTGGTATGAAATCTTGTTG 60.142 45.833 30.63 6.07 0.00 3.33
2428 2870 4.019174 CCCAGCTGGTATGAAATCTTGTT 58.981 43.478 30.63 0.00 0.00 2.83
2429 2871 3.266772 TCCCAGCTGGTATGAAATCTTGT 59.733 43.478 30.63 0.00 34.77 3.16
2430 2872 3.881688 CTCCCAGCTGGTATGAAATCTTG 59.118 47.826 30.63 11.18 34.77 3.02
2431 2873 3.117738 CCTCCCAGCTGGTATGAAATCTT 60.118 47.826 30.63 0.00 34.77 2.40
2434 2876 2.173569 GTCCTCCCAGCTGGTATGAAAT 59.826 50.000 30.63 0.00 34.77 2.17
2441 2883 1.763770 CAAAGTCCTCCCAGCTGGT 59.236 57.895 30.63 8.87 34.77 4.00
2535 2977 7.930865 ACTTATGACTATGATCTTGCTTCCTTC 59.069 37.037 0.00 0.00 0.00 3.46
2573 3015 2.504244 GTTCCGAGCCTCGACACG 60.504 66.667 17.19 0.00 43.74 4.49
2595 3037 3.298619 AGCTATTTATGTGCATTGGCCA 58.701 40.909 0.00 0.00 40.13 5.36
2600 3042 4.601019 GCGACAAGCTATTTATGTGCATT 58.399 39.130 0.00 0.00 44.04 3.56
2669 3111 1.270147 CGGGGGTTATCGTCTGGATTC 60.270 57.143 0.00 0.00 36.55 2.52
2678 3120 0.902531 ATGATAGCCGGGGGTTATCG 59.097 55.000 2.18 0.00 45.01 2.92
2682 3124 1.149101 ATCAATGATAGCCGGGGGTT 58.851 50.000 2.18 0.00 0.00 4.11
2700 3142 2.480416 GCACAGCTAGTTCACTCGCTAT 60.480 50.000 5.71 0.00 42.21 2.97
2711 3153 0.829333 CTCCCATCAGCACAGCTAGT 59.171 55.000 0.00 0.00 36.40 2.57
2721 3163 1.227089 CGAGCGAACCTCCCATCAG 60.227 63.158 0.00 0.00 37.27 2.90
2807 3249 4.099824 CCACCACGTTTTTGTACTTGTTC 58.900 43.478 0.00 0.00 0.00 3.18
2818 3260 1.673329 GGTTGTTTGCCACCACGTTTT 60.673 47.619 0.00 0.00 0.00 2.43
3273 3719 7.272978 AGCTTGAAAATCACGGTACATAGTAT 58.727 34.615 0.00 0.00 0.00 2.12
3275 3721 5.488341 AGCTTGAAAATCACGGTACATAGT 58.512 37.500 0.00 0.00 0.00 2.12
3344 4213 2.303311 GGCTTTCCCTTCTGTAGACTGT 59.697 50.000 0.00 0.00 0.00 3.55
3354 4223 1.688735 ACTTTGCTTGGCTTTCCCTTC 59.311 47.619 0.00 0.00 0.00 3.46
3430 4299 4.833380 TGTAAAAATTGACCGATTTCCCCA 59.167 37.500 0.00 0.00 0.00 4.96
3645 6605 6.239217 TGGTGAGCAGAAACTATATGTCAT 57.761 37.500 0.00 0.00 0.00 3.06
3689 6649 7.918033 CACGATGGCCATTTAATAAATACAACA 59.082 33.333 21.84 0.00 0.00 3.33
3712 6672 8.535592 TGCACTTGAACAATTTTTAAATACACG 58.464 29.630 0.00 0.00 0.00 4.49
3743 6726 8.918961 TTTTCAGATACACGTTGAACATTTTT 57.081 26.923 0.00 0.00 31.11 1.94
3744 6727 8.967218 CATTTTCAGATACACGTTGAACATTTT 58.033 29.630 0.00 0.00 31.11 1.82
3745 6728 8.134895 ACATTTTCAGATACACGTTGAACATTT 58.865 29.630 0.00 0.00 31.11 2.32
3746 6729 7.648142 ACATTTTCAGATACACGTTGAACATT 58.352 30.769 0.00 0.00 31.11 2.71
3747 6730 7.202016 ACATTTTCAGATACACGTTGAACAT 57.798 32.000 0.00 0.00 31.11 2.71
3748 6731 6.612247 ACATTTTCAGATACACGTTGAACA 57.388 33.333 0.00 0.00 31.11 3.18
3749 6732 7.908193 AAACATTTTCAGATACACGTTGAAC 57.092 32.000 0.00 0.00 31.11 3.18
3751 6734 9.605955 CATTAAACATTTTCAGATACACGTTGA 57.394 29.630 0.00 0.00 0.00 3.18
3752 6735 9.393249 ACATTAAACATTTTCAGATACACGTTG 57.607 29.630 0.00 0.00 0.00 4.10
3819 6802 7.860373 TGCGTTGGATATTTTTCTAATACATGC 59.140 33.333 0.00 0.00 0.00 4.06
4054 7053 7.643764 GCAAACCCAAAAGCTAAAAGAAAATTC 59.356 33.333 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.