Multiple sequence alignment - TraesCS6B01G439400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G439400 chr6B 100.000 5448 0 0 1 5448 704881414 704886861 0.000000e+00 10061
1 TraesCS6B01G439400 chr6B 86.527 334 40 2 3328 3661 644064764 644065092 4.010000e-96 363
2 TraesCS6B01G439400 chr6B 81.493 335 28 15 3327 3661 339803152 339803452 1.520000e-60 244
3 TraesCS6B01G439400 chr6A 90.941 3124 197 50 2346 5433 609170397 609173470 0.000000e+00 4122
4 TraesCS6B01G439400 chr6A 83.138 1281 111 67 89 1327 609168235 609169452 0.000000e+00 1072
5 TraesCS6B01G439400 chr6A 82.087 642 48 35 3052 3661 257353454 257354060 2.280000e-133 486
6 TraesCS6B01G439400 chr6D 86.998 2538 202 62 2288 4757 462416318 462418795 0.000000e+00 2741
7 TraesCS6B01G439400 chr6D 85.258 1316 102 38 48 1327 452100309 452101568 0.000000e+00 1271
8 TraesCS6B01G439400 chr6D 83.464 1403 118 50 155 1513 462413649 462414981 0.000000e+00 1201
9 TraesCS6B01G439400 chr6D 88.618 738 57 16 1558 2294 462415112 462415823 0.000000e+00 872
10 TraesCS6B01G439400 chr6D 82.456 684 54 28 4794 5433 462419376 462420037 6.210000e-149 538
11 TraesCS6B01G439400 chr6D 78.983 295 42 13 1987 2264 462415110 462415401 3.350000e-42 183
12 TraesCS6B01G439400 chr6D 91.892 74 6 0 48 121 462413570 462413643 2.680000e-18 104
13 TraesCS6B01G439400 chr1B 90.204 490 44 3 1558 2043 491633818 491633329 2.140000e-178 636
14 TraesCS6B01G439400 chr1B 83.066 561 64 22 3922 4464 656155816 656156363 1.060000e-131 481
15 TraesCS6B01G439400 chr1B 88.922 334 32 3 3328 3661 319249877 319250205 1.830000e-109 407
16 TraesCS6B01G439400 chr1B 87.764 237 23 5 2926 3157 23675222 23675457 6.950000e-69 272
17 TraesCS6B01G439400 chr1B 88.690 168 14 3 3494 3661 663286129 663285967 3.330000e-47 200
18 TraesCS6B01G439400 chr1B 91.156 147 10 3 2522 2666 23675079 23675224 4.310000e-46 196
19 TraesCS6B01G439400 chr1B 81.333 150 17 7 1374 1513 491634100 491633952 1.600000e-20 111
20 TraesCS6B01G439400 chr5A 82.399 642 46 35 3052 3661 70135359 70135965 1.050000e-136 497
21 TraesCS6B01G439400 chr5A 81.159 345 45 14 1966 2293 702267872 702268213 5.410000e-65 259
22 TraesCS6B01G439400 chr5A 80.814 344 47 14 1966 2293 41274815 41275155 9.060000e-63 252
23 TraesCS6B01G439400 chr5A 91.096 146 11 2 2522 2666 439769200 439769056 4.310000e-46 196
24 TraesCS6B01G439400 chr2B 83.213 554 69 17 3925 4464 749141293 749140750 2.280000e-133 486
25 TraesCS6B01G439400 chr2B 83.985 537 52 22 3925 4442 31443665 31443144 8.200000e-133 484
26 TraesCS6B01G439400 chr2B 92.727 275 19 1 3052 3325 763435344 763435618 3.950000e-106 396
27 TraesCS6B01G439400 chr2B 87.692 325 35 3 3337 3661 44564870 44564551 1.850000e-99 374
28 TraesCS6B01G439400 chr2B 84.470 264 35 5 2035 2293 684835044 684835306 7.000000e-64 255
29 TraesCS6B01G439400 chr2B 88.095 168 15 3 3494 3661 411889621 411889783 1.550000e-45 195
30 TraesCS6B01G439400 chr7B 83.066 561 63 22 3922 4464 662924275 662924821 1.060000e-131 481
31 TraesCS6B01G439400 chr7B 89.385 179 10 4 3483 3661 17501239 17501070 3.300000e-52 217
32 TraesCS6B01G439400 chr3A 81.776 642 49 24 3052 3661 221516617 221517222 4.940000e-130 475
33 TraesCS6B01G439400 chr3A 84.149 429 38 15 3925 4335 746126874 746126458 6.620000e-104 388
34 TraesCS6B01G439400 chr3A 83.090 343 43 9 4130 4464 69317458 69317123 1.150000e-76 298
35 TraesCS6B01G439400 chr3A 84.848 264 34 5 2035 2293 701653729 701653467 1.510000e-65 261
36 TraesCS6B01G439400 chr1A 81.493 643 52 37 3052 3661 175541747 175541139 2.970000e-127 466
37 TraesCS6B01G439400 chr1A 87.126 334 38 2 3328 3661 346748801 346749129 1.850000e-99 374
38 TraesCS6B01G439400 chr1A 85.227 264 33 5 2035 2293 23087024 23087286 3.240000e-67 267
39 TraesCS6B01G439400 chr1A 81.449 345 44 14 1966 2293 566576125 566576466 1.160000e-66 265
40 TraesCS6B01G439400 chr2A 91.694 301 23 2 3052 3350 71082014 71081714 3.040000e-112 416
41 TraesCS6B01G439400 chr3B 85.577 416 37 14 3931 4335 828936926 828936523 1.090000e-111 414
42 TraesCS6B01G439400 chr3B 91.273 275 22 2 3052 3325 150099377 150099650 1.850000e-99 374
43 TraesCS6B01G439400 chr3D 88.650 326 31 4 3337 3662 1936788 1936469 5.120000e-105 392
44 TraesCS6B01G439400 chr4A 89.803 304 26 3 3358 3661 715281980 715281682 8.560000e-103 385
45 TraesCS6B01G439400 chr4A 84.840 343 38 13 3922 4255 716039895 716040232 3.140000e-87 333
46 TraesCS6B01G439400 chr4A 80.994 342 45 14 1969 2293 158724515 158724177 2.520000e-63 254
47 TraesCS6B01G439400 chr4A 82.667 225 31 7 4242 4464 716041978 716042196 5.570000e-45 193
48 TraesCS6B01G439400 chr5D 87.126 334 38 3 3328 3661 159887665 159887993 1.850000e-99 374
49 TraesCS6B01G439400 chr7A 84.091 264 36 5 2035 2293 151894565 151894303 3.260000e-62 250
50 TraesCS6B01G439400 chr5B 84.091 264 36 5 2035 2293 638720988 638720726 3.260000e-62 250


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G439400 chr6B 704881414 704886861 5447 False 10061.000000 10061 100.000000 1 5448 1 chr6B.!!$F3 5447
1 TraesCS6B01G439400 chr6A 609168235 609173470 5235 False 2597.000000 4122 87.039500 89 5433 2 chr6A.!!$F2 5344
2 TraesCS6B01G439400 chr6A 257353454 257354060 606 False 486.000000 486 82.087000 3052 3661 1 chr6A.!!$F1 609
3 TraesCS6B01G439400 chr6D 452100309 452101568 1259 False 1271.000000 1271 85.258000 48 1327 1 chr6D.!!$F1 1279
4 TraesCS6B01G439400 chr6D 462413570 462420037 6467 False 939.833333 2741 85.401833 48 5433 6 chr6D.!!$F2 5385
5 TraesCS6B01G439400 chr1B 656155816 656156363 547 False 481.000000 481 83.066000 3922 4464 1 chr1B.!!$F2 542
6 TraesCS6B01G439400 chr1B 491633329 491634100 771 True 373.500000 636 85.768500 1374 2043 2 chr1B.!!$R2 669
7 TraesCS6B01G439400 chr5A 70135359 70135965 606 False 497.000000 497 82.399000 3052 3661 1 chr5A.!!$F2 609
8 TraesCS6B01G439400 chr2B 749140750 749141293 543 True 486.000000 486 83.213000 3925 4464 1 chr2B.!!$R3 539
9 TraesCS6B01G439400 chr2B 31443144 31443665 521 True 484.000000 484 83.985000 3925 4442 1 chr2B.!!$R1 517
10 TraesCS6B01G439400 chr7B 662924275 662924821 546 False 481.000000 481 83.066000 3922 4464 1 chr7B.!!$F1 542
11 TraesCS6B01G439400 chr3A 221516617 221517222 605 False 475.000000 475 81.776000 3052 3661 1 chr3A.!!$F1 609
12 TraesCS6B01G439400 chr1A 175541139 175541747 608 True 466.000000 466 81.493000 3052 3661 1 chr1A.!!$R1 609
13 TraesCS6B01G439400 chr4A 716039895 716042196 2301 False 263.000000 333 83.753500 3922 4464 2 chr4A.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.535102 AGGAAAACCAGTGGAGCACG 60.535 55.0 18.40 0.00 39.64 5.34 F
1334 1401 0.242017 GTTAGGTTGCTGCTGCCTTG 59.758 55.0 17.67 0.00 38.71 3.61 F
1685 2177 0.391661 ACTTAGCAGGCATGGTGACG 60.392 55.0 14.17 3.79 37.78 4.35 F
2593 3613 0.033601 AAACACAACACCCTGCCTGA 60.034 50.0 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 1405 0.034896 ATACCGCCGATGACCATTCC 59.965 55.0 0.00 0.0 0.0 3.01 R
2532 3550 0.319555 CCAAGTTCAGTCTTCGCCGA 60.320 55.0 0.00 0.0 0.0 5.54 R
2697 3725 0.533491 ATTACAACTAGGACGCGGCA 59.467 50.0 17.00 0.0 0.0 5.69 R
4452 7338 0.329596 AGAGGATGCAACCCAAGGAC 59.670 55.0 9.78 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.413899 CTTTCAAGCTATCAGTACTACTTTCC 57.586 38.462 0.00 0.00 0.00 3.13
30 31 6.466885 TCAAGCTATCAGTACTACTTTCCC 57.533 41.667 0.00 0.00 0.00 3.97
31 32 5.067413 TCAAGCTATCAGTACTACTTTCCCG 59.933 44.000 0.00 0.00 0.00 5.14
32 33 3.318557 AGCTATCAGTACTACTTTCCCGC 59.681 47.826 0.00 0.00 0.00 6.13
33 34 3.067742 GCTATCAGTACTACTTTCCCGCA 59.932 47.826 0.00 0.00 0.00 5.69
34 35 4.441079 GCTATCAGTACTACTTTCCCGCAA 60.441 45.833 0.00 0.00 0.00 4.85
35 36 4.546829 ATCAGTACTACTTTCCCGCAAA 57.453 40.909 0.00 0.00 0.00 3.68
36 37 4.339872 TCAGTACTACTTTCCCGCAAAA 57.660 40.909 0.00 0.00 0.00 2.44
37 38 4.706035 TCAGTACTACTTTCCCGCAAAAA 58.294 39.130 0.00 0.00 0.00 1.94
80 81 2.568623 ACTAGCAGGAAAACCAGTGG 57.431 50.000 7.91 7.91 0.00 4.00
84 85 0.823356 GCAGGAAAACCAGTGGAGCA 60.823 55.000 18.40 0.00 0.00 4.26
86 87 0.535102 AGGAAAACCAGTGGAGCACG 60.535 55.000 18.40 0.00 39.64 5.34
106 107 1.730772 GCGAGTATAGCTGCGATCTGG 60.731 57.143 0.00 0.23 32.35 3.86
132 133 2.928396 AGGTCCGGGGAACACTGG 60.928 66.667 5.41 0.00 38.29 4.00
170 172 4.628074 TCTGTACTGGTTGCTGAAACTAC 58.372 43.478 0.00 0.00 38.92 2.73
228 230 2.534903 GCGGATGCGGAACCTAAGC 61.535 63.158 9.20 0.00 0.00 3.09
235 237 1.235724 GCGGAACCTAAGCAAACTGT 58.764 50.000 0.00 0.00 0.00 3.55
264 266 3.242739 CGCGGCATCAAATTAAAGCTACT 60.243 43.478 0.00 0.00 0.00 2.57
449 457 4.191015 GAACCCCATCTCCGGCCC 62.191 72.222 0.00 0.00 0.00 5.80
488 513 3.309506 ACGCTGCTGCTCACTCCT 61.310 61.111 14.03 0.00 36.97 3.69
528 554 3.440127 AGAGAAGAGAAGAGGAACTGGG 58.560 50.000 0.00 0.00 41.55 4.45
541 567 5.132816 AGAGGAACTGGGAAGAAAGAAAGAA 59.867 40.000 0.00 0.00 41.55 2.52
542 568 5.766590 AGGAACTGGGAAGAAAGAAAGAAA 58.233 37.500 0.00 0.00 37.18 2.52
563 589 1.595609 GAAGAAGAATGTGCGCGTTG 58.404 50.000 9.96 0.00 0.00 4.10
745 773 2.652113 CCCTCTTCCTCCTCCCCCT 61.652 68.421 0.00 0.00 0.00 4.79
746 774 1.074850 CCTCTTCCTCCTCCCCCTC 60.075 68.421 0.00 0.00 0.00 4.30
747 775 1.074850 CTCTTCCTCCTCCCCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
748 776 2.040359 CTTCCTCCTCCCCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
749 777 3.707189 TTCCTCCTCCCCCTCCCC 61.707 72.222 0.00 0.00 0.00 4.81
750 778 4.761304 TCCTCCTCCCCCTCCCCT 62.761 72.222 0.00 0.00 0.00 4.79
751 779 4.505970 CCTCCTCCCCCTCCCCTG 62.506 77.778 0.00 0.00 0.00 4.45
833 863 2.202756 GGCGCGAAATCGAGAGGT 60.203 61.111 12.10 0.00 41.67 3.85
851 881 3.430907 TAGAGCCGCCGGAGATCCA 62.431 63.158 7.68 0.00 35.14 3.41
884 916 0.763604 TCCACCCACCTCCGTGTTTA 60.764 55.000 0.00 0.00 38.41 2.01
898 930 4.523558 TCCGTGTTTATTCCCGGAATTTTT 59.476 37.500 17.92 0.00 45.71 1.94
939 976 4.933064 GCCGGGTCTCTGATCGCG 62.933 72.222 2.18 0.00 39.16 5.87
957 995 3.365265 GGCGGTGCTGGGTTCTTG 61.365 66.667 0.00 0.00 0.00 3.02
984 1023 3.691342 CGTGGAGGGAGCCGAACA 61.691 66.667 0.00 0.00 0.00 3.18
985 1024 2.047179 GTGGAGGGAGCCGAACAC 60.047 66.667 0.00 0.00 0.00 3.32
993 1032 4.353437 AGCCGAACACCGACGTCC 62.353 66.667 10.58 0.00 41.76 4.79
1021 1060 2.517484 GAACGCGAGGGGGTAAGCTT 62.517 60.000 15.93 3.48 38.54 3.74
1024 1063 2.718073 GCGAGGGGGTAAGCTTCGA 61.718 63.158 0.00 0.00 33.38 3.71
1025 1064 2.029307 GCGAGGGGGTAAGCTTCGAT 62.029 60.000 0.00 0.00 33.38 3.59
1028 1067 1.887707 GGGGGTAAGCTTCGATGCG 60.888 63.158 16.59 0.00 38.13 4.73
1031 1070 1.491505 GGGTAAGCTTCGATGCGCTC 61.492 60.000 16.59 8.31 34.96 5.03
1033 1072 0.806102 GTAAGCTTCGATGCGCTCCA 60.806 55.000 16.59 0.00 34.96 3.86
1035 1074 1.156645 AAGCTTCGATGCGCTCCATC 61.157 55.000 16.59 2.01 45.58 3.51
1043 1086 1.531423 ATGCGCTCCATCATCCATTC 58.469 50.000 9.73 0.00 0.00 2.67
1044 1087 0.471191 TGCGCTCCATCATCCATTCT 59.529 50.000 9.73 0.00 0.00 2.40
1048 1091 1.202903 GCTCCATCATCCATTCTGCCT 60.203 52.381 0.00 0.00 0.00 4.75
1059 1102 5.059404 TCCATTCTGCCTTTTCGAATTTC 57.941 39.130 0.00 0.00 0.00 2.17
1060 1103 4.766891 TCCATTCTGCCTTTTCGAATTTCT 59.233 37.500 0.00 0.00 0.00 2.52
1065 1108 1.404181 GCCTTTTCGAATTTCTGGGCC 60.404 52.381 0.00 0.00 33.07 5.80
1118 1165 2.174319 GGGCGAGATTCGTTCCTGC 61.174 63.158 0.17 0.00 42.81 4.85
1119 1166 2.174319 GGCGAGATTCGTTCCTGCC 61.174 63.158 0.17 5.82 42.81 4.85
1120 1167 1.153549 GCGAGATTCGTTCCTGCCT 60.154 57.895 0.17 0.00 42.81 4.75
1123 1170 0.391661 GAGATTCGTTCCTGCCTGCA 60.392 55.000 0.00 0.00 0.00 4.41
1143 1190 2.885861 CCTAGCCTCGTTCACGCT 59.114 61.111 0.00 0.00 39.60 5.07
1159 1226 1.451927 GCTCAATGGGATGCCGTGA 60.452 57.895 0.00 3.91 0.00 4.35
1167 1234 0.532862 GGGATGCCGTGACACATAGG 60.533 60.000 6.37 0.00 0.00 2.57
1176 1243 1.933853 GTGACACATAGGATTGCCGTC 59.066 52.381 0.00 0.00 39.96 4.79
1213 1280 4.678499 TGCGATGCGTGCTGTCCA 62.678 61.111 0.00 0.00 0.00 4.02
1276 1343 0.843309 TCCTCTTTGTTGCTGGTCCA 59.157 50.000 0.00 0.00 0.00 4.02
1277 1344 1.214175 TCCTCTTTGTTGCTGGTCCAA 59.786 47.619 0.00 0.00 0.00 3.53
1327 1394 2.558359 AGTGAATTGGTTAGGTTGCTGC 59.442 45.455 0.00 0.00 0.00 5.25
1328 1395 2.558359 GTGAATTGGTTAGGTTGCTGCT 59.442 45.455 0.00 0.00 0.00 4.24
1329 1396 2.557924 TGAATTGGTTAGGTTGCTGCTG 59.442 45.455 0.00 0.00 0.00 4.41
1330 1397 0.890683 ATTGGTTAGGTTGCTGCTGC 59.109 50.000 8.89 8.89 40.20 5.25
1331 1398 1.178534 TTGGTTAGGTTGCTGCTGCC 61.179 55.000 13.47 2.96 38.71 4.85
1332 1399 1.303643 GGTTAGGTTGCTGCTGCCT 60.304 57.895 13.47 16.91 38.71 4.75
1333 1400 0.895559 GGTTAGGTTGCTGCTGCCTT 60.896 55.000 17.67 0.00 38.71 4.35
1334 1401 0.242017 GTTAGGTTGCTGCTGCCTTG 59.758 55.000 17.67 0.00 38.71 3.61
1335 1402 1.526575 TTAGGTTGCTGCTGCCTTGC 61.527 55.000 17.67 0.00 38.71 4.01
1336 1403 2.416107 TAGGTTGCTGCTGCCTTGCT 62.416 55.000 17.67 0.83 38.71 3.91
1337 1404 2.049433 GTTGCTGCTGCCTTGCTG 60.049 61.111 13.47 0.00 38.71 4.41
1338 1405 3.299977 TTGCTGCTGCCTTGCTGG 61.300 61.111 13.47 0.00 38.71 4.85
1341 1408 2.282674 CTGCTGCCTTGCTGGGAA 60.283 61.111 0.00 0.00 35.09 3.97
1343 1410 1.945354 CTGCTGCCTTGCTGGGAATG 61.945 60.000 0.00 0.00 35.09 2.67
1344 1411 2.718073 GCTGCCTTGCTGGGAATGG 61.718 63.158 0.00 0.00 35.09 3.16
1345 1412 1.304713 CTGCCTTGCTGGGAATGGT 60.305 57.895 0.00 0.00 35.09 3.55
1346 1413 1.304381 TGCCTTGCTGGGAATGGTC 60.304 57.895 0.00 0.00 36.00 4.02
1347 1414 1.304381 GCCTTGCTGGGAATGGTCA 60.304 57.895 0.00 0.00 36.00 4.02
1348 1415 0.685458 GCCTTGCTGGGAATGGTCAT 60.685 55.000 0.00 0.00 36.00 3.06
1349 1416 1.396653 CCTTGCTGGGAATGGTCATC 58.603 55.000 0.00 0.00 0.00 2.92
1350 1417 1.019673 CTTGCTGGGAATGGTCATCG 58.980 55.000 0.00 0.00 0.00 3.84
1351 1418 0.394216 TTGCTGGGAATGGTCATCGG 60.394 55.000 0.00 0.00 0.00 4.18
1353 1420 1.889105 CTGGGAATGGTCATCGGCG 60.889 63.158 0.00 0.00 0.00 6.46
1354 1421 2.591715 GGGAATGGTCATCGGCGG 60.592 66.667 7.21 0.00 0.00 6.13
1356 1423 1.444250 GGAATGGTCATCGGCGGTA 59.556 57.895 7.21 0.00 0.00 4.02
1358 1425 1.542547 GGAATGGTCATCGGCGGTATT 60.543 52.381 7.21 0.00 0.00 1.89
1359 1426 1.531149 GAATGGTCATCGGCGGTATTG 59.469 52.381 7.21 0.08 0.00 1.90
1360 1427 0.884704 ATGGTCATCGGCGGTATTGC 60.885 55.000 7.21 0.00 0.00 3.56
1362 1429 2.279851 TCATCGGCGGTATTGCGG 60.280 61.111 7.21 0.00 36.61 5.69
1371 1694 1.019278 CGGTATTGCGGTGCTGAACT 61.019 55.000 0.00 0.00 0.00 3.01
1380 1704 2.109126 GTGCTGAACTCGATGGGGC 61.109 63.158 0.00 0.00 0.00 5.80
1386 1710 2.270874 GAACTCGATGGGGCCATGGT 62.271 60.000 14.67 0.00 36.70 3.55
1401 1725 0.622136 ATGGTGATGCTCTTGCCAGA 59.378 50.000 0.00 0.00 38.71 3.86
1424 1754 2.367486 ACTAGTTAGTCACCGCTCTCC 58.633 52.381 0.00 0.00 0.00 3.71
1463 1793 4.439305 TGCCTGCATTTGTTTGACTATC 57.561 40.909 0.00 0.00 0.00 2.08
1465 1795 4.168760 GCCTGCATTTGTTTGACTATCAC 58.831 43.478 0.00 0.00 0.00 3.06
1469 1799 4.168760 GCATTTGTTTGACTATCACAGGC 58.831 43.478 0.00 0.00 0.00 4.85
1472 1802 3.945981 TGTTTGACTATCACAGGCGTA 57.054 42.857 0.00 0.00 33.39 4.42
1522 1857 5.782893 TGGAACAAAGATCGATGGTTTTT 57.217 34.783 0.54 0.00 31.92 1.94
1523 1858 6.885952 TGGAACAAAGATCGATGGTTTTTA 57.114 33.333 0.54 0.00 31.92 1.52
1524 1859 7.461182 TGGAACAAAGATCGATGGTTTTTAT 57.539 32.000 0.54 0.00 31.92 1.40
1526 1861 9.015367 TGGAACAAAGATCGATGGTTTTTATTA 57.985 29.630 0.54 0.00 31.92 0.98
1586 2071 8.422973 TCTGATTTTTCAGTTTCACCAAATTG 57.577 30.769 3.15 0.00 38.75 2.32
1629 2121 1.400846 CATTGCCAGCATCTCACTGTC 59.599 52.381 0.00 0.00 33.09 3.51
1631 2123 1.560505 TGCCAGCATCTCACTGTCTA 58.439 50.000 0.00 0.00 33.09 2.59
1638 2130 5.417811 CAGCATCTCACTGTCTATTTGTCT 58.582 41.667 0.00 0.00 0.00 3.41
1667 2159 6.272822 AGTTGAAGGGAGATGCATTTAAAC 57.727 37.500 0.00 0.19 0.00 2.01
1685 2177 0.391661 ACTTAGCAGGCATGGTGACG 60.392 55.000 14.17 3.79 37.78 4.35
1722 2214 1.136500 GTCTTACACCCCCGTCAGATC 59.864 57.143 0.00 0.00 0.00 2.75
1724 2216 1.137086 CTTACACCCCCGTCAGATCAG 59.863 57.143 0.00 0.00 0.00 2.90
1762 2254 3.579151 GACTCTTGGGACCTACTGTTCTT 59.421 47.826 0.00 0.00 0.00 2.52
1879 2371 6.821388 ACATCCTGTTAGCCACTCTTATTAG 58.179 40.000 0.00 0.00 0.00 1.73
1937 2429 5.507985 GGAAATGAATACAAGGCATGGTAGC 60.508 44.000 0.00 0.00 0.00 3.58
1948 2440 1.202580 GCATGGTAGCCTCTCATTCGT 60.203 52.381 0.00 0.00 0.00 3.85
1960 2452 5.428253 CCTCTCATTCGTATCCCTTTTTCA 58.572 41.667 0.00 0.00 0.00 2.69
2027 2521 8.988060 TCAGTTCCACCAGATTTACTATAATGA 58.012 33.333 0.00 0.00 0.00 2.57
2060 2555 4.421058 CATTGCCATCATCTCACTGTTTG 58.579 43.478 0.00 0.00 0.00 2.93
2075 2570 4.876107 CACTGTTTGTTTGTCCACTCTAGT 59.124 41.667 0.00 0.00 0.00 2.57
2076 2571 5.354234 CACTGTTTGTTTGTCCACTCTAGTT 59.646 40.000 0.00 0.00 0.00 2.24
2077 2572 5.354234 ACTGTTTGTTTGTCCACTCTAGTTG 59.646 40.000 0.00 0.00 0.00 3.16
2078 2573 5.492895 TGTTTGTTTGTCCACTCTAGTTGA 58.507 37.500 0.00 0.00 0.00 3.18
2079 2574 5.941058 TGTTTGTTTGTCCACTCTAGTTGAA 59.059 36.000 0.00 0.00 0.00 2.69
2080 2575 6.601613 TGTTTGTTTGTCCACTCTAGTTGAAT 59.398 34.615 0.00 0.00 0.00 2.57
2081 2576 7.122055 TGTTTGTTTGTCCACTCTAGTTGAATT 59.878 33.333 0.00 0.00 0.00 2.17
2082 2577 6.618287 TGTTTGTCCACTCTAGTTGAATTG 57.382 37.500 0.00 0.00 0.00 2.32
2083 2578 6.353323 TGTTTGTCCACTCTAGTTGAATTGA 58.647 36.000 0.00 0.00 0.00 2.57
2084 2579 6.260050 TGTTTGTCCACTCTAGTTGAATTGAC 59.740 38.462 0.00 0.00 0.00 3.18
2085 2580 5.545063 TGTCCACTCTAGTTGAATTGACA 57.455 39.130 0.00 0.00 0.00 3.58
2086 2581 5.924356 TGTCCACTCTAGTTGAATTGACAA 58.076 37.500 0.00 0.00 0.00 3.18
2087 2582 5.758296 TGTCCACTCTAGTTGAATTGACAAC 59.242 40.000 0.00 0.00 46.97 3.32
2100 2595 5.862323 TGAATTGACAACGTCTACTCTTAGC 59.138 40.000 0.00 0.00 33.15 3.09
2103 2598 3.819337 TGACAACGTCTACTCTTAGCAGT 59.181 43.478 0.00 0.00 33.15 4.40
2156 2657 2.709934 ACCCTCCCATCAGATCAATGAG 59.290 50.000 9.11 0.00 31.44 2.90
2185 2686 1.141254 CTGGACTCTCCGGAGCTACTA 59.859 57.143 27.39 15.38 45.95 1.82
2196 2697 6.016192 TCTCCGGAGCTACTATTCTAACATTG 60.016 42.308 27.39 0.00 0.00 2.82
2221 2722 4.760715 AGGCTATAGCAGAATGAATTGCAG 59.239 41.667 25.53 0.00 42.67 4.41
2249 2750 8.969121 TTGTGTATTCTTGCATTTCATACTTG 57.031 30.769 0.00 0.00 0.00 3.16
2269 2770 7.956420 ACTTGTTACAAACTGTTATCATCGA 57.044 32.000 0.00 0.00 0.00 3.59
2275 2776 4.333649 ACAAACTGTTATCATCGAGCATGG 59.666 41.667 0.00 0.00 32.64 3.66
2300 3302 7.182817 AGATAACATGTTGTTAGCCACTCTA 57.817 36.000 21.42 0.00 46.90 2.43
2311 3313 9.353999 GTTGTTAGCCACTCTAATTAAAAATGG 57.646 33.333 0.00 0.00 39.29 3.16
2312 3314 8.062065 TGTTAGCCACTCTAATTAAAAATGGG 57.938 34.615 6.77 0.00 39.29 4.00
2314 3316 8.745590 GTTAGCCACTCTAATTAAAAATGGGAA 58.254 33.333 6.77 0.00 39.29 3.97
2316 3318 8.379428 AGCCACTCTAATTAAAAATGGGAATT 57.621 30.769 6.77 0.00 0.00 2.17
2317 3319 8.478066 AGCCACTCTAATTAAAAATGGGAATTC 58.522 33.333 0.00 0.00 0.00 2.17
2318 3320 7.710907 GCCACTCTAATTAAAAATGGGAATTCC 59.289 37.037 16.74 16.74 0.00 3.01
2343 3345 6.003950 ACTGCTATACAAGGAAAGCAAAAGA 58.996 36.000 0.00 0.00 43.85 2.52
2351 3353 7.288810 ACAAGGAAAGCAAAAGACATGATAA 57.711 32.000 0.00 0.00 0.00 1.75
2363 3365 9.645059 CAAAAGACATGATAAACTCTCAGTCTA 57.355 33.333 0.00 0.00 33.72 2.59
2379 3390 9.814899 CTCTCAGTCTAATACATGAATCTGTTT 57.185 33.333 0.00 0.00 0.00 2.83
2393 3404 9.178427 CATGAATCTGTTTCTCTTGTTTTCTTC 57.822 33.333 0.00 0.00 35.23 2.87
2395 3406 9.613428 TGAATCTGTTTCTCTTGTTTTCTTCTA 57.387 29.630 0.70 0.00 35.23 2.10
2396 3407 9.871299 GAATCTGTTTCTCTTGTTTTCTTCTAC 57.129 33.333 0.00 0.00 0.00 2.59
2399 3410 8.047310 TCTGTTTCTCTTGTTTTCTTCTACCTT 58.953 33.333 0.00 0.00 0.00 3.50
2400 3411 7.985476 TGTTTCTCTTGTTTTCTTCTACCTTG 58.015 34.615 0.00 0.00 0.00 3.61
2403 3414 8.575649 TTCTCTTGTTTTCTTCTACCTTGTTT 57.424 30.769 0.00 0.00 0.00 2.83
2404 3415 9.675464 TTCTCTTGTTTTCTTCTACCTTGTTTA 57.325 29.630 0.00 0.00 0.00 2.01
2419 3435 4.381932 CCTTGTTTAAGGCATCCCAATGTC 60.382 45.833 0.00 0.00 46.47 3.06
2432 3448 2.368439 CCAATGTCGATCCAACATGGT 58.632 47.619 8.68 0.00 39.03 3.55
2445 3462 4.086457 CCAACATGGTTTTAAGGTAGCCT 58.914 43.478 0.00 0.00 30.47 4.58
2452 3469 5.887754 TGGTTTTAAGGTAGCCTGAATCTT 58.112 37.500 0.00 0.00 32.13 2.40
2453 3470 5.944007 TGGTTTTAAGGTAGCCTGAATCTTC 59.056 40.000 0.00 0.00 32.13 2.87
2459 3476 2.620585 GGTAGCCTGAATCTTCAATGGC 59.379 50.000 12.82 12.82 44.45 4.40
2462 3479 3.371965 AGCCTGAATCTTCAATGGCATT 58.628 40.909 19.47 6.96 45.73 3.56
2464 3481 5.145564 AGCCTGAATCTTCAATGGCATTAT 58.854 37.500 13.23 0.00 45.73 1.28
2513 3531 4.764308 GGATGATGGGAGAGAAATTAAGGC 59.236 45.833 0.00 0.00 0.00 4.35
2515 3533 3.454447 TGATGGGAGAGAAATTAAGGCGA 59.546 43.478 0.00 0.00 0.00 5.54
2517 3535 2.838202 TGGGAGAGAAATTAAGGCGAGT 59.162 45.455 0.00 0.00 0.00 4.18
2518 3536 3.263425 TGGGAGAGAAATTAAGGCGAGTT 59.737 43.478 0.00 0.00 0.00 3.01
2534 3552 8.467402 AAGGCGAGTTGATATTCTATTTATCG 57.533 34.615 0.00 0.00 0.00 2.92
2566 3586 2.086251 CTTGGTGCCAAACATGCGGT 62.086 55.000 5.10 0.00 35.33 5.68
2581 3601 0.305313 GCGGTGCGAAGTAAACACAA 59.695 50.000 0.00 0.00 36.00 3.33
2584 3604 2.711885 GGTGCGAAGTAAACACAACAC 58.288 47.619 0.00 0.00 36.00 3.32
2593 3613 0.033601 AAACACAACACCCTGCCTGA 60.034 50.000 0.00 0.00 0.00 3.86
2641 3669 5.163854 CCCTAACAAGAAATCTGCTAACACG 60.164 44.000 0.00 0.00 0.00 4.49
2644 3672 6.371809 AACAAGAAATCTGCTAACACGAAA 57.628 33.333 0.00 0.00 0.00 3.46
2650 3678 8.149973 AGAAATCTGCTAACACGAAAAACTTA 57.850 30.769 0.00 0.00 0.00 2.24
2653 3681 6.236017 TCTGCTAACACGAAAAACTTATGG 57.764 37.500 0.00 0.00 0.00 2.74
2658 3686 6.183359 GCTAACACGAAAAACTTATGGCAATG 60.183 38.462 0.00 0.00 0.00 2.82
2697 3725 3.758755 TCTCATGTCTTGCACTCTGTT 57.241 42.857 0.00 0.00 0.00 3.16
2702 3730 2.253452 CTTGCACTCTGTTGCCGC 59.747 61.111 0.00 0.00 42.25 6.53
2705 3733 4.077188 GCACTCTGTTGCCGCGTC 62.077 66.667 4.92 0.00 36.42 5.19
2706 3734 3.414700 CACTCTGTTGCCGCGTCC 61.415 66.667 4.92 0.00 0.00 4.79
2707 3735 3.616721 ACTCTGTTGCCGCGTCCT 61.617 61.111 4.92 0.00 0.00 3.85
2715 3743 0.317799 TTGCCGCGTCCTAGTTGTAA 59.682 50.000 4.92 0.00 0.00 2.41
2742 3770 3.639094 ACATCTATACCCTGTGACAGCTC 59.361 47.826 7.16 0.00 0.00 4.09
2745 3773 4.720046 TCTATACCCTGTGACAGCTCTAG 58.280 47.826 7.16 5.41 0.00 2.43
2751 3779 3.561143 CCTGTGACAGCTCTAGGAGTAT 58.439 50.000 7.16 0.00 31.39 2.12
2758 3790 9.620259 TGTGACAGCTCTAGGAGTATATATATG 57.380 37.037 5.44 0.00 31.39 1.78
2825 3866 7.015098 TGACCATTATCAAAAGTTTGGTGATGT 59.985 33.333 16.24 8.06 41.20 3.06
2849 3890 4.231140 TGTCCTCACAGGGCATCA 57.769 55.556 0.00 0.00 46.76 3.07
2924 3969 5.258051 TCCCCCTCAATACATTTGTTGTAC 58.742 41.667 0.00 0.00 43.46 2.90
3039 4090 6.419116 GCATTTCTCTGTTTCTTTTGGACTTC 59.581 38.462 0.00 0.00 0.00 3.01
3054 4105 5.643379 TGGACTTCATGTTTTTCTATGCC 57.357 39.130 0.00 0.00 0.00 4.40
3109 4161 7.108847 ACTATTCTCTGCACTTTTGATAGCTT 58.891 34.615 0.00 0.00 0.00 3.74
3213 4265 1.937278 ACATGAGAATGAGCGAGCTG 58.063 50.000 0.84 0.00 0.00 4.24
3347 4401 9.241317 CATATTGATTGTGCTTGTTTATCTTCC 57.759 33.333 0.00 0.00 0.00 3.46
3370 4455 6.646653 TCCAATTGTATCGCTTAGCTAAGATG 59.353 38.462 32.88 23.80 35.33 2.90
3415 4500 5.372547 ACGCTTTCTAAAAAGGAACATCC 57.627 39.130 0.58 0.00 41.87 3.51
3450 4535 8.814235 CAAAACTAAGAGACGAACAACTTTAGA 58.186 33.333 0.00 0.00 0.00 2.10
3554 4649 3.817647 GCCAGTGAGGAATTAAGCATAGG 59.182 47.826 0.00 0.00 41.22 2.57
3615 4711 9.838339 GATGAGAAGGAATCTTAACTTAATGGA 57.162 33.333 0.00 0.00 38.96 3.41
3770 4870 2.416747 TGAGCTGTTGACGGAATCTTG 58.583 47.619 0.00 0.00 0.00 3.02
3776 4876 2.616376 TGTTGACGGAATCTTGTGTTGG 59.384 45.455 0.00 0.00 0.00 3.77
3788 4888 3.195610 TCTTGTGTTGGTCGATGAGCTAT 59.804 43.478 0.00 0.00 0.00 2.97
3793 4893 0.758734 TGGTCGATGAGCTATTGGGG 59.241 55.000 0.00 0.00 0.00 4.96
3894 4994 4.022935 TCAGTCTGAATTTTGCTTGCGAAT 60.023 37.500 0.00 0.00 0.00 3.34
3898 4998 4.456911 TCTGAATTTTGCTTGCGAATCTCT 59.543 37.500 0.00 0.00 0.00 3.10
3901 5001 5.048504 TGAATTTTGCTTGCGAATCTCTCTT 60.049 36.000 0.00 0.00 0.00 2.85
3905 5005 3.402110 TGCTTGCGAATCTCTCTTTGAA 58.598 40.909 0.00 0.00 0.00 2.69
3918 5018 6.475504 TCTCTCTTTGAACAATTAGGCATGA 58.524 36.000 0.00 0.00 0.00 3.07
3923 5026 3.355378 TGAACAATTAGGCATGACCAGG 58.645 45.455 0.00 0.00 43.14 4.45
4014 5118 5.292834 CGTAGTTCATGATGTTCTGCTCAAT 59.707 40.000 0.00 0.00 0.00 2.57
4183 5302 6.822676 CCTTCAAAGATCTGAATCTACTGCTT 59.177 38.462 0.00 0.00 41.54 3.91
4217 5336 3.559069 CATCACATGCCTTATTCAGGGT 58.441 45.455 0.00 0.00 44.16 4.34
4282 7162 3.395639 ACAAATTCAAGACGGTAAGCGA 58.604 40.909 0.00 0.00 0.00 4.93
4283 7163 3.432252 ACAAATTCAAGACGGTAAGCGAG 59.568 43.478 0.00 0.00 0.00 5.03
4292 7172 1.779569 CGGTAAGCGAGCGGATTAAT 58.220 50.000 5.48 0.00 45.37 1.40
4297 7177 3.854286 AAGCGAGCGGATTAATTAACG 57.146 42.857 0.00 2.03 0.00 3.18
4298 7178 3.088194 AGCGAGCGGATTAATTAACGA 57.912 42.857 11.23 0.00 0.00 3.85
4299 7179 3.650139 AGCGAGCGGATTAATTAACGAT 58.350 40.909 11.23 5.70 0.00 3.73
4303 7183 4.147653 CGAGCGGATTAATTAACGATTCGT 59.852 41.667 5.75 5.75 43.97 3.85
4315 7195 0.572590 CGATTCGTCGTGCATCTTCC 59.427 55.000 0.00 0.00 0.00 3.46
4338 7219 4.261825 CCCTTGTATTCTCCTGAGACGATC 60.262 50.000 0.00 0.00 37.14 3.69
4339 7221 4.582656 CCTTGTATTCTCCTGAGACGATCT 59.417 45.833 0.00 0.00 37.14 2.75
4342 7224 7.608376 CCTTGTATTCTCCTGAGACGATCTATA 59.392 40.741 0.00 0.00 37.14 1.31
4617 7503 0.796312 GCACCGTGTGTGGATTACAG 59.204 55.000 0.00 0.00 45.55 2.74
4719 7614 9.133627 CTGTCATGCTACATGTATGATAACTAC 57.866 37.037 11.88 1.68 46.49 2.73
4789 8189 0.110869 TCCTGGGGTTTTGGTTACCG 59.889 55.000 0.00 0.00 36.49 4.02
4824 8261 1.153168 TTGAGCGCTTATCTGGGGC 60.153 57.895 13.26 0.00 41.87 5.80
4868 8305 3.737172 CCGCGGCCAAAAGGACAG 61.737 66.667 14.67 0.00 0.00 3.51
4975 8412 1.580132 GCGATTAACAACTGGCGCG 60.580 57.895 0.00 0.00 35.02 6.86
5017 8465 1.087771 GCCCTAATCGTGTGGGAACG 61.088 60.000 0.91 0.00 43.47 3.95
5077 8525 3.003482 GCAGCAGCCAATCTTAATCAGAG 59.997 47.826 0.00 0.00 31.88 3.35
5081 8529 3.314635 CAGCCAATCTTAATCAGAGGCAC 59.685 47.826 0.00 0.00 42.86 5.01
5121 8597 2.105306 AGCAGCACCAGATACATGCATA 59.895 45.455 0.00 0.00 41.97 3.14
5146 8622 6.403878 TGAACAACCCTTAATCTACTACTGC 58.596 40.000 0.00 0.00 0.00 4.40
5189 8670 6.040209 TGATTAGTGCCTGATTTGCATTTT 57.960 33.333 0.00 0.00 41.46 1.82
5190 8671 5.870433 TGATTAGTGCCTGATTTGCATTTTG 59.130 36.000 0.00 0.00 41.46 2.44
5191 8672 2.419667 AGTGCCTGATTTGCATTTTGC 58.580 42.857 0.00 0.00 45.29 3.68
5214 8695 5.393027 GCAATTGTTAGGGGTGTGTTAGATG 60.393 44.000 7.40 0.00 0.00 2.90
5236 8717 0.178938 TCATGCACACCACCCCATTT 60.179 50.000 0.00 0.00 0.00 2.32
5237 8718 0.037139 CATGCACACCACCCCATTTG 60.037 55.000 0.00 0.00 0.00 2.32
5322 8803 2.159114 GGCAGTGCTTTGTGGAAAGAAA 60.159 45.455 16.11 0.00 41.12 2.52
5323 8804 3.118542 GCAGTGCTTTGTGGAAAGAAAG 58.881 45.455 8.18 0.00 41.12 2.62
5324 8805 3.709987 CAGTGCTTTGTGGAAAGAAAGG 58.290 45.455 0.00 0.00 41.12 3.11
5325 8806 2.695147 AGTGCTTTGTGGAAAGAAAGGG 59.305 45.455 0.00 0.00 41.12 3.95
5326 8807 2.693074 GTGCTTTGTGGAAAGAAAGGGA 59.307 45.455 0.00 0.00 41.12 4.20
5327 8808 3.132111 GTGCTTTGTGGAAAGAAAGGGAA 59.868 43.478 0.00 0.00 41.12 3.97
5372 8853 6.972901 GGGTTTGCATACTTAATTAACTGCTC 59.027 38.462 17.13 10.88 0.00 4.26
5433 8914 0.773644 GTGGGGTGGAGGCATATGAT 59.226 55.000 6.97 0.00 0.00 2.45
5434 8915 1.985159 GTGGGGTGGAGGCATATGATA 59.015 52.381 6.97 0.00 0.00 2.15
5435 8916 2.578021 GTGGGGTGGAGGCATATGATAT 59.422 50.000 6.97 0.00 0.00 1.63
5436 8917 2.577563 TGGGGTGGAGGCATATGATATG 59.422 50.000 6.97 8.06 0.00 1.78
5437 8918 2.846206 GGGGTGGAGGCATATGATATGA 59.154 50.000 16.22 0.00 0.00 2.15
5438 8919 3.118112 GGGGTGGAGGCATATGATATGAG 60.118 52.174 16.22 0.00 0.00 2.90
5439 8920 3.539604 GGTGGAGGCATATGATATGAGC 58.460 50.000 16.22 1.59 0.00 4.26
5440 8921 3.054875 GGTGGAGGCATATGATATGAGCA 60.055 47.826 16.22 0.00 0.00 4.26
5441 8922 4.384978 GGTGGAGGCATATGATATGAGCAT 60.385 45.833 16.22 0.00 0.00 3.79
5442 8923 4.575236 GTGGAGGCATATGATATGAGCATG 59.425 45.833 16.22 0.00 0.00 4.06
5443 8924 4.135306 GGAGGCATATGATATGAGCATGG 58.865 47.826 16.22 0.00 0.00 3.66
5444 8925 3.552875 AGGCATATGATATGAGCATGGC 58.447 45.455 16.22 3.01 41.15 4.40
5445 8926 3.053917 AGGCATATGATATGAGCATGGCA 60.054 43.478 16.22 0.00 42.73 4.92
5446 8927 3.315470 GGCATATGATATGAGCATGGCAG 59.685 47.826 16.22 0.00 40.70 4.85
5447 8928 3.315470 GCATATGATATGAGCATGGCAGG 59.685 47.826 16.22 0.00 31.73 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.492994 GGGAAAGTAGTACTGATAGCTTGAAAG 59.507 40.741 5.39 0.00 0.00 2.62
5 6 7.328737 GGGAAAGTAGTACTGATAGCTTGAAA 58.671 38.462 5.39 0.00 0.00 2.69
6 7 6.405508 CGGGAAAGTAGTACTGATAGCTTGAA 60.406 42.308 5.39 0.00 0.00 2.69
7 8 5.067413 CGGGAAAGTAGTACTGATAGCTTGA 59.933 44.000 5.39 0.00 0.00 3.02
8 9 5.282510 CGGGAAAGTAGTACTGATAGCTTG 58.717 45.833 5.39 0.00 0.00 4.01
9 10 4.202131 GCGGGAAAGTAGTACTGATAGCTT 60.202 45.833 5.39 0.00 0.00 3.74
10 11 3.318557 GCGGGAAAGTAGTACTGATAGCT 59.681 47.826 5.39 0.00 0.00 3.32
11 12 3.067742 TGCGGGAAAGTAGTACTGATAGC 59.932 47.826 5.39 7.24 0.00 2.97
12 13 4.913335 TGCGGGAAAGTAGTACTGATAG 57.087 45.455 5.39 0.00 0.00 2.08
13 14 5.664294 TTTGCGGGAAAGTAGTACTGATA 57.336 39.130 5.39 0.00 0.00 2.15
14 15 4.546829 TTTGCGGGAAAGTAGTACTGAT 57.453 40.909 5.39 0.00 0.00 2.90
15 16 4.339872 TTTTGCGGGAAAGTAGTACTGA 57.660 40.909 5.39 0.00 0.00 3.41
44 45 7.342284 TCCTGCTAGTAGTACTGATAGCTTTTT 59.658 37.037 27.63 0.00 40.98 1.94
45 46 6.834451 TCCTGCTAGTAGTACTGATAGCTTTT 59.166 38.462 27.63 0.00 40.98 2.27
46 47 6.366340 TCCTGCTAGTAGTACTGATAGCTTT 58.634 40.000 27.63 0.00 40.98 3.51
80 81 1.272114 GCAGCTATACTCGCGTGCTC 61.272 60.000 5.77 0.00 32.57 4.26
84 85 0.110147 GATCGCAGCTATACTCGCGT 60.110 55.000 5.77 2.07 42.62 6.01
86 87 1.612156 CAGATCGCAGCTATACTCGC 58.388 55.000 0.00 0.00 0.00 5.03
106 107 2.190578 CCCGGACCTGATTGAGCC 59.809 66.667 0.73 0.00 0.00 4.70
132 133 6.744112 CAGTACAGAGAAATACTGGGATCTC 58.256 44.000 0.00 0.00 43.02 2.75
141 142 5.479306 TCAGCAACCAGTACAGAGAAATAC 58.521 41.667 0.00 0.00 0.00 1.89
170 172 2.476873 ACTACAGTAGCTTCGATGCG 57.523 50.000 16.59 6.08 38.13 4.73
212 214 1.132453 GTTTGCTTAGGTTCCGCATCC 59.868 52.381 0.00 0.00 33.15 3.51
213 215 2.084546 AGTTTGCTTAGGTTCCGCATC 58.915 47.619 0.00 0.00 33.15 3.91
214 216 1.812571 CAGTTTGCTTAGGTTCCGCAT 59.187 47.619 0.00 0.00 33.15 4.73
215 217 1.234821 CAGTTTGCTTAGGTTCCGCA 58.765 50.000 0.00 0.00 0.00 5.69
216 218 1.235724 ACAGTTTGCTTAGGTTCCGC 58.764 50.000 0.00 0.00 0.00 5.54
217 219 3.660865 AGTACAGTTTGCTTAGGTTCCG 58.339 45.455 0.00 0.00 0.00 4.30
218 220 4.934001 GGTAGTACAGTTTGCTTAGGTTCC 59.066 45.833 2.06 0.00 0.00 3.62
228 230 1.356527 GCCGCGGGTAGTACAGTTTG 61.357 60.000 29.38 0.00 0.00 2.93
235 237 0.466543 ATTTGATGCCGCGGGTAGTA 59.533 50.000 29.38 0.00 0.00 1.82
283 291 4.410400 CCAAGGTGCCGTCCCCTC 62.410 72.222 0.00 0.00 0.00 4.30
284 292 4.974438 TCCAAGGTGCCGTCCCCT 62.974 66.667 0.00 0.00 0.00 4.79
461 469 4.406173 AGCAGCGTGAGTCGTCGG 62.406 66.667 9.04 0.00 42.13 4.79
505 530 5.020132 CCCAGTTCCTCTTCTCTTCTCTTA 58.980 45.833 0.00 0.00 0.00 2.10
528 554 9.676195 CATTCTTCTTCCTTTCTTTCTTTCTTC 57.324 33.333 0.00 0.00 0.00 2.87
541 567 0.798776 CGCGCACATTCTTCTTCCTT 59.201 50.000 8.75 0.00 0.00 3.36
542 568 0.320771 ACGCGCACATTCTTCTTCCT 60.321 50.000 5.73 0.00 0.00 3.36
745 773 3.743017 GGAATGGCAGGCAGGGGA 61.743 66.667 1.89 0.00 0.00 4.81
746 774 4.847367 GGGAATGGCAGGCAGGGG 62.847 72.222 1.89 0.00 0.00 4.79
747 775 4.847367 GGGGAATGGCAGGCAGGG 62.847 72.222 1.89 0.00 0.00 4.45
748 776 4.847367 GGGGGAATGGCAGGCAGG 62.847 72.222 1.89 0.00 0.00 4.85
766 794 3.752167 TCGGGGGAGGAGGAGGAC 61.752 72.222 0.00 0.00 0.00 3.85
767 795 3.752167 GTCGGGGGAGGAGGAGGA 61.752 72.222 0.00 0.00 0.00 3.71
833 863 2.597805 GGATCTCCGGCGGCTCTA 60.598 66.667 23.83 2.19 0.00 2.43
898 930 2.557372 GGGCGCCGAAAACAAAGGA 61.557 57.895 22.54 0.00 0.00 3.36
939 976 4.660938 AAGAACCCAGCACCGCCC 62.661 66.667 0.00 0.00 0.00 6.13
1021 1060 1.005748 GGATGATGGAGCGCATCGA 60.006 57.895 11.47 1.70 41.32 3.59
1024 1063 1.073444 AGAATGGATGATGGAGCGCAT 59.927 47.619 11.47 0.00 0.00 4.73
1025 1064 0.471191 AGAATGGATGATGGAGCGCA 59.529 50.000 11.47 0.00 0.00 6.09
1028 1067 1.202903 AGGCAGAATGGATGATGGAGC 60.203 52.381 0.00 0.00 35.86 4.70
1031 1070 3.243301 CGAAAAGGCAGAATGGATGATGG 60.243 47.826 0.00 0.00 35.86 3.51
1033 1072 3.889815 TCGAAAAGGCAGAATGGATGAT 58.110 40.909 0.00 0.00 35.86 2.45
1035 1074 4.644103 ATTCGAAAAGGCAGAATGGATG 57.356 40.909 0.00 0.00 35.86 3.51
1036 1075 5.420104 AGAAATTCGAAAAGGCAGAATGGAT 59.580 36.000 0.00 0.00 35.11 3.41
1043 1086 2.672195 GCCCAGAAATTCGAAAAGGCAG 60.672 50.000 0.00 0.00 39.01 4.85
1044 1087 1.272212 GCCCAGAAATTCGAAAAGGCA 59.728 47.619 0.00 0.00 39.01 4.75
1048 1091 0.242555 GCGGCCCAGAAATTCGAAAA 59.757 50.000 0.00 0.00 0.00 2.29
1059 1102 2.111878 CCCTAATCAGCGGCCCAG 59.888 66.667 0.00 0.00 0.00 4.45
1060 1103 4.189580 GCCCTAATCAGCGGCCCA 62.190 66.667 0.00 0.00 34.03 5.36
1135 1182 0.099436 GCATCCCATTGAGCGTGAAC 59.901 55.000 0.00 0.00 0.00 3.18
1139 1186 2.514592 CGGCATCCCATTGAGCGT 60.515 61.111 0.00 0.00 0.00 5.07
1143 1190 0.676466 GTGTCACGGCATCCCATTGA 60.676 55.000 0.00 0.00 0.00 2.57
1159 1226 0.179084 CGGACGGCAATCCTATGTGT 60.179 55.000 0.00 0.00 36.52 3.72
1167 1234 1.636340 CACGAATCGGACGGCAATC 59.364 57.895 7.80 0.00 34.93 2.67
1176 1243 1.203994 ACTACCAACTCCACGAATCGG 59.796 52.381 7.80 0.00 0.00 4.18
1213 1280 3.300388 TCGATCCTCTAGGCTCACAAAT 58.700 45.455 0.00 0.00 30.98 2.32
1276 1343 0.391597 ACCGTCGAACCATGACACTT 59.608 50.000 0.00 0.00 36.11 3.16
1277 1344 0.391597 AACCGTCGAACCATGACACT 59.608 50.000 0.00 0.00 36.11 3.55
1327 1394 1.304713 ACCATTCCCAGCAAGGCAG 60.305 57.895 0.00 0.00 35.39 4.85
1328 1395 1.304381 GACCATTCCCAGCAAGGCA 60.304 57.895 0.00 0.00 35.39 4.75
1329 1396 0.685458 ATGACCATTCCCAGCAAGGC 60.685 55.000 0.00 0.00 35.39 4.35
1330 1397 1.396653 GATGACCATTCCCAGCAAGG 58.603 55.000 0.00 0.00 37.03 3.61
1331 1398 1.019673 CGATGACCATTCCCAGCAAG 58.980 55.000 0.00 0.00 0.00 4.01
1332 1399 0.394216 CCGATGACCATTCCCAGCAA 60.394 55.000 0.00 0.00 0.00 3.91
1333 1400 1.224315 CCGATGACCATTCCCAGCA 59.776 57.895 0.00 0.00 0.00 4.41
1334 1401 2.189499 GCCGATGACCATTCCCAGC 61.189 63.158 0.00 0.00 0.00 4.85
1335 1402 1.889105 CGCCGATGACCATTCCCAG 60.889 63.158 0.00 0.00 0.00 4.45
1336 1403 2.189257 CGCCGATGACCATTCCCA 59.811 61.111 0.00 0.00 0.00 4.37
1337 1404 2.035237 TACCGCCGATGACCATTCCC 62.035 60.000 0.00 0.00 0.00 3.97
1338 1405 0.034896 ATACCGCCGATGACCATTCC 59.965 55.000 0.00 0.00 0.00 3.01
1339 1406 1.531149 CAATACCGCCGATGACCATTC 59.469 52.381 0.00 0.00 0.00 2.67
1340 1407 1.593196 CAATACCGCCGATGACCATT 58.407 50.000 0.00 0.00 0.00 3.16
1341 1408 0.884704 GCAATACCGCCGATGACCAT 60.885 55.000 0.00 0.00 0.00 3.55
1343 1410 2.594962 CGCAATACCGCCGATGACC 61.595 63.158 0.00 0.00 0.00 4.02
1344 1411 2.594962 CCGCAATACCGCCGATGAC 61.595 63.158 0.00 0.00 0.00 3.06
1345 1412 2.279851 CCGCAATACCGCCGATGA 60.280 61.111 0.00 0.00 0.00 2.92
1346 1413 2.587753 ACCGCAATACCGCCGATG 60.588 61.111 0.00 0.00 0.00 3.84
1347 1414 2.587753 CACCGCAATACCGCCGAT 60.588 61.111 0.00 0.00 0.00 4.18
1350 1417 3.876198 CAGCACCGCAATACCGCC 61.876 66.667 0.00 0.00 0.00 6.13
1351 1418 2.395360 TTCAGCACCGCAATACCGC 61.395 57.895 0.00 0.00 0.00 5.68
1353 1420 0.727398 GAGTTCAGCACCGCAATACC 59.273 55.000 0.00 0.00 0.00 2.73
1354 1421 0.370273 CGAGTTCAGCACCGCAATAC 59.630 55.000 0.00 0.00 0.00 1.89
1356 1423 0.391661 ATCGAGTTCAGCACCGCAAT 60.392 50.000 0.00 0.00 0.00 3.56
1358 1425 1.737735 CATCGAGTTCAGCACCGCA 60.738 57.895 0.00 0.00 0.00 5.69
1359 1426 2.456119 CCATCGAGTTCAGCACCGC 61.456 63.158 0.00 0.00 0.00 5.68
1360 1427 1.811266 CCCATCGAGTTCAGCACCG 60.811 63.158 0.00 0.00 0.00 4.94
1362 1429 2.109126 GCCCCATCGAGTTCAGCAC 61.109 63.158 0.00 0.00 0.00 4.40
1371 1694 2.078044 ATCACCATGGCCCCATCGA 61.078 57.895 13.04 0.00 33.90 3.59
1380 1704 0.681887 TGGCAAGAGCATCACCATGG 60.682 55.000 11.19 11.19 44.61 3.66
1386 1710 1.558294 AGTCATCTGGCAAGAGCATCA 59.442 47.619 0.00 0.00 44.61 3.07
1418 1748 3.265939 ACTAGAACACCTAGCGGAGAGC 61.266 54.545 0.00 0.00 46.98 4.09
1421 1751 4.793353 GCATAACTAGAACACCTAGCGGAG 60.793 50.000 0.00 0.00 46.98 4.63
1424 1754 3.068307 AGGCATAACTAGAACACCTAGCG 59.932 47.826 0.00 0.00 46.98 4.26
1498 1833 5.782893 AAACCATCGATCTTTGTTCCAAA 57.217 34.783 0.00 0.00 0.00 3.28
1537 1872 9.486497 AGAACTGTATATGAACATAAGCTGATG 57.514 33.333 9.75 9.75 0.00 3.07
1554 1889 8.352942 GGTGAAACTGAAAAATCAGAACTGTAT 58.647 33.333 12.46 0.00 39.99 2.29
1556 1891 6.152661 TGGTGAAACTGAAAAATCAGAACTGT 59.847 34.615 12.46 0.00 39.99 3.55
1629 2121 8.294954 TCCCTTCAACTAGAGTAGACAAATAG 57.705 38.462 0.00 0.00 0.00 1.73
1631 2123 6.954684 TCTCCCTTCAACTAGAGTAGACAAAT 59.045 38.462 0.00 0.00 0.00 2.32
1638 2130 4.610333 TGCATCTCCCTTCAACTAGAGTA 58.390 43.478 0.00 0.00 0.00 2.59
1667 2159 0.391661 ACGTCACCATGCCTGCTAAG 60.392 55.000 0.00 0.00 0.00 2.18
1685 2177 2.991250 AGACCAATGCCATGTCAGTAC 58.009 47.619 0.00 0.00 0.00 2.73
1722 2214 2.158755 AGTCCAGGTTCTTGGTTCACTG 60.159 50.000 1.13 0.00 39.35 3.66
1724 2216 2.104963 AGAGTCCAGGTTCTTGGTTCAC 59.895 50.000 1.13 0.00 39.35 3.18
1793 2285 6.238103 GGAATACACAATACATCAGTTCCACG 60.238 42.308 0.00 0.00 34.28 4.94
1879 2371 9.866798 AGATAGCATTTGAATTTCCTTCTTTTC 57.133 29.630 0.00 0.00 34.75 2.29
1937 2429 5.428253 TGAAAAAGGGATACGAATGAGAGG 58.572 41.667 0.00 0.00 37.60 3.69
1948 2440 9.354673 GAATAATCCTGTCATGAAAAAGGGATA 57.645 33.333 16.47 11.65 32.61 2.59
1960 2452 6.604396 TGTGCAAGATTGAATAATCCTGTCAT 59.396 34.615 0.00 0.00 42.99 3.06
2060 2555 6.260050 TGTCAATTCAACTAGAGTGGACAAAC 59.740 38.462 0.00 0.00 32.14 2.93
2075 2570 6.365247 GCTAAGAGTAGACGTTGTCAATTCAA 59.635 38.462 0.00 0.00 34.60 2.69
2076 2571 5.862323 GCTAAGAGTAGACGTTGTCAATTCA 59.138 40.000 0.00 0.00 34.60 2.57
2077 2572 5.862323 TGCTAAGAGTAGACGTTGTCAATTC 59.138 40.000 0.00 0.00 34.60 2.17
2078 2573 5.779922 TGCTAAGAGTAGACGTTGTCAATT 58.220 37.500 0.00 0.00 34.60 2.32
2079 2574 5.047943 ACTGCTAAGAGTAGACGTTGTCAAT 60.048 40.000 0.00 0.00 34.60 2.57
2080 2575 4.277672 ACTGCTAAGAGTAGACGTTGTCAA 59.722 41.667 0.00 0.00 34.60 3.18
2081 2576 3.819337 ACTGCTAAGAGTAGACGTTGTCA 59.181 43.478 0.00 0.00 34.60 3.58
2082 2577 4.083431 TGACTGCTAAGAGTAGACGTTGTC 60.083 45.833 0.00 0.00 32.00 3.18
2083 2578 3.819337 TGACTGCTAAGAGTAGACGTTGT 59.181 43.478 0.00 0.00 32.00 3.32
2084 2579 4.421033 TGACTGCTAAGAGTAGACGTTG 57.579 45.455 0.00 0.00 32.00 4.10
2085 2580 5.047943 ACAATGACTGCTAAGAGTAGACGTT 60.048 40.000 0.00 0.00 33.85 3.99
2086 2581 4.459685 ACAATGACTGCTAAGAGTAGACGT 59.540 41.667 0.00 0.00 32.00 4.34
2087 2582 4.795795 CACAATGACTGCTAAGAGTAGACG 59.204 45.833 0.00 0.00 32.00 4.18
2088 2583 5.802956 GTCACAATGACTGCTAAGAGTAGAC 59.197 44.000 1.64 0.00 43.73 2.59
2089 2584 5.955488 GTCACAATGACTGCTAAGAGTAGA 58.045 41.667 1.64 0.00 43.73 2.59
2103 2598 5.792741 TGTCATGTCAGTATGTCACAATGA 58.207 37.500 0.00 0.00 36.88 2.57
2124 2625 4.047166 TGATGGGAGGGTAAGATCAATGT 58.953 43.478 0.00 0.00 0.00 2.71
2156 2657 1.135333 CGGAGAGTCCAGGTTCTTAGC 59.865 57.143 0.00 0.00 35.91 3.09
2185 2686 8.195165 TCTGCTATAGCCTACAATGTTAGAAT 57.805 34.615 21.84 0.00 41.18 2.40
2196 2697 5.702670 TGCAATTCATTCTGCTATAGCCTAC 59.297 40.000 21.84 0.00 41.18 3.18
2249 2750 6.403333 TGCTCGATGATAACAGTTTGTAAC 57.597 37.500 0.00 0.00 0.00 2.50
2254 2755 4.769688 TCCATGCTCGATGATAACAGTTT 58.230 39.130 0.00 0.00 33.31 2.66
2264 2765 4.313282 ACATGTTATCTCCATGCTCGATG 58.687 43.478 0.00 0.00 42.74 3.84
2267 2768 3.873361 ACAACATGTTATCTCCATGCTCG 59.127 43.478 11.53 0.00 42.74 5.03
2269 2770 5.297776 GCTAACAACATGTTATCTCCATGCT 59.702 40.000 11.53 0.00 41.45 3.79
2275 2776 6.109359 AGAGTGGCTAACAACATGTTATCTC 58.891 40.000 11.53 1.87 41.45 2.75
2309 3311 4.385199 CCTTGTATAGCAGTGGAATTCCCA 60.385 45.833 21.90 7.25 44.25 4.37
2311 3313 5.036117 TCCTTGTATAGCAGTGGAATTCC 57.964 43.478 18.17 18.17 31.77 3.01
2312 3314 6.458888 GCTTTCCTTGTATAGCAGTGGAATTC 60.459 42.308 0.00 0.00 39.46 2.17
2314 3316 4.884164 GCTTTCCTTGTATAGCAGTGGAAT 59.116 41.667 0.00 0.00 39.46 3.01
2316 3318 3.263170 TGCTTTCCTTGTATAGCAGTGGA 59.737 43.478 0.00 0.00 38.61 4.02
2317 3319 3.609853 TGCTTTCCTTGTATAGCAGTGG 58.390 45.455 0.00 0.00 38.61 4.00
2318 3320 5.627499 TTTGCTTTCCTTGTATAGCAGTG 57.373 39.130 0.00 0.00 43.71 3.66
2320 3322 6.072508 TGTCTTTTGCTTTCCTTGTATAGCAG 60.073 38.462 0.00 0.00 43.71 4.24
2328 3330 7.869429 AGTTTATCATGTCTTTTGCTTTCCTTG 59.131 33.333 0.00 0.00 0.00 3.61
2351 3353 8.976353 ACAGATTCATGTATTAGACTGAGAGTT 58.024 33.333 0.00 0.00 0.00 3.01
2379 3390 9.675464 TTAAACAAGGTAGAAGAAAACAAGAGA 57.325 29.630 0.00 0.00 0.00 3.10
2384 3395 6.603997 TGCCTTAAACAAGGTAGAAGAAAACA 59.396 34.615 5.38 0.00 42.00 2.83
2385 3396 7.034685 TGCCTTAAACAAGGTAGAAGAAAAC 57.965 36.000 5.38 0.00 42.00 2.43
2390 3401 4.640647 GGGATGCCTTAAACAAGGTAGAAG 59.359 45.833 0.00 0.00 42.00 2.85
2393 3404 3.963129 TGGGATGCCTTAAACAAGGTAG 58.037 45.455 4.35 0.00 42.00 3.18
2395 3406 2.990740 TGGGATGCCTTAAACAAGGT 57.009 45.000 4.35 0.00 42.00 3.50
2396 3407 3.515104 ACATTGGGATGCCTTAAACAAGG 59.485 43.478 4.35 0.00 42.87 3.61
2399 3410 2.752354 CGACATTGGGATGCCTTAAACA 59.248 45.455 4.35 0.00 36.72 2.83
2400 3411 3.013921 TCGACATTGGGATGCCTTAAAC 58.986 45.455 4.35 0.00 36.72 2.01
2403 3414 2.224523 GGATCGACATTGGGATGCCTTA 60.225 50.000 4.35 0.00 36.72 2.69
2404 3415 1.477558 GGATCGACATTGGGATGCCTT 60.478 52.381 4.35 0.00 36.72 4.35
2419 3435 5.448632 GCTACCTTAAAACCATGTTGGATCG 60.449 44.000 0.00 0.00 40.96 3.69
2432 3448 7.122650 CCATTGAAGATTCAGGCTACCTTAAAA 59.877 37.037 0.00 0.00 38.61 1.52
2445 3462 5.010314 GCTCCATAATGCCATTGAAGATTCA 59.990 40.000 0.00 0.00 34.92 2.57
2452 3469 5.617528 ATTTTGCTCCATAATGCCATTGA 57.382 34.783 0.00 0.00 0.00 2.57
2453 3470 6.422701 CAGTATTTTGCTCCATAATGCCATTG 59.577 38.462 0.00 0.00 0.00 2.82
2459 3476 9.806203 TTTCATTCAGTATTTTGCTCCATAATG 57.194 29.630 0.00 0.00 0.00 1.90
2462 3479 8.347004 TGTTTCATTCAGTATTTTGCTCCATA 57.653 30.769 0.00 0.00 0.00 2.74
2464 3481 6.647334 TGTTTCATTCAGTATTTTGCTCCA 57.353 33.333 0.00 0.00 0.00 3.86
2513 3531 6.745907 TCGCCGATAAATAGAATATCAACTCG 59.254 38.462 0.00 0.00 31.47 4.18
2515 3533 8.304596 TCTTCGCCGATAAATAGAATATCAACT 58.695 33.333 0.00 0.00 31.47 3.16
2517 3535 8.304596 AGTCTTCGCCGATAAATAGAATATCAA 58.695 33.333 0.00 0.00 31.47 2.57
2518 3536 7.755373 CAGTCTTCGCCGATAAATAGAATATCA 59.245 37.037 0.00 0.00 31.47 2.15
2532 3550 0.319555 CCAAGTTCAGTCTTCGCCGA 60.320 55.000 0.00 0.00 0.00 5.54
2534 3552 0.868406 CACCAAGTTCAGTCTTCGCC 59.132 55.000 0.00 0.00 0.00 5.54
2566 3586 1.671845 GGGTGTTGTGTTTACTTCGCA 59.328 47.619 0.00 0.00 0.00 5.10
2581 3601 2.759114 CCACATCAGGCAGGGTGT 59.241 61.111 0.00 0.00 0.00 4.16
2593 3613 7.993183 GGGTATTTGCTATATATAGTGCCACAT 59.007 37.037 18.81 10.58 32.96 3.21
2653 3681 3.859386 GTGCTATAAACACTTGGCATTGC 59.141 43.478 0.00 0.00 35.12 3.56
2658 3686 4.635765 TGAGATGTGCTATAAACACTTGGC 59.364 41.667 7.00 0.00 38.86 4.52
2697 3725 0.533491 ATTACAACTAGGACGCGGCA 59.467 50.000 17.00 0.00 0.00 5.69
2705 3733 9.924650 GGGTATAGATGTTACATTACAACTAGG 57.075 37.037 0.00 0.00 37.00 3.02
2715 3743 6.463049 GCTGTCACAGGGTATAGATGTTACAT 60.463 42.308 7.00 0.00 32.40 2.29
2758 3790 6.759497 ACACAATTGCCCTAACTTCTATTC 57.241 37.500 5.05 0.00 0.00 1.75
2792 3825 7.382218 CAAACTTTTGATAATGGTCAGACCAAC 59.618 37.037 26.53 16.94 45.41 3.77
2924 3969 8.177013 TCAATAAATTCTGAACACATCATCACG 58.823 33.333 0.00 0.00 37.44 4.35
2969 4018 9.995003 TTTGCATATGAAAAGGACTAATGTTTT 57.005 25.926 6.97 0.00 0.00 2.43
3013 4064 4.676924 GTCCAAAAGAAACAGAGAAATGCG 59.323 41.667 0.00 0.00 0.00 4.73
3022 4073 7.832503 AAAACATGAAGTCCAAAAGAAACAG 57.167 32.000 0.00 0.00 0.00 3.16
3039 4090 5.389859 TGACAAGGGCATAGAAAAACATG 57.610 39.130 0.00 0.00 0.00 3.21
3054 4105 6.446781 AGAATGCATACAGATTTGACAAGG 57.553 37.500 0.00 0.00 0.00 3.61
3109 4161 1.301716 GCAGTTCTGGTGCTTCGGA 60.302 57.895 1.97 0.00 37.96 4.55
3213 4265 2.547211 CTCGATCTTGCAATCCATCCAC 59.453 50.000 0.00 0.00 0.00 4.02
3347 4401 6.425114 ACCATCTTAGCTAAGCGATACAATTG 59.575 38.462 25.83 12.03 33.40 2.32
3370 4455 9.911980 GCGTACAACTAAAAATATCTTCTTACC 57.088 33.333 0.00 0.00 0.00 2.85
3385 4470 8.337532 GTTCCTTTTTAGAAAGCGTACAACTAA 58.662 33.333 0.18 0.00 40.75 2.24
3415 4500 6.448006 TCGTCTCTTAGTTTTGAGAGGAAAG 58.552 40.000 11.35 0.00 45.28 2.62
3423 4508 7.605410 AAAGTTGTTCGTCTCTTAGTTTTGA 57.395 32.000 0.00 0.00 0.00 2.69
3554 4649 1.067846 GGGGAAACTCATGCCGAAAAC 60.068 52.381 0.00 0.00 0.00 2.43
3579 4675 7.804843 AGATTCCTTCTCATCTAGCAATTTG 57.195 36.000 0.00 0.00 0.00 2.32
3638 4735 5.049167 TCAAATTGCATCAGTCAAACCAAC 58.951 37.500 0.00 0.00 0.00 3.77
3645 4742 2.229543 GCTGGTCAAATTGCATCAGTCA 59.770 45.455 0.00 0.00 0.00 3.41
3646 4743 2.416431 GGCTGGTCAAATTGCATCAGTC 60.416 50.000 0.00 5.77 0.00 3.51
3770 4870 2.609459 CCAATAGCTCATCGACCAACAC 59.391 50.000 0.00 0.00 0.00 3.32
3776 4876 0.759346 ACCCCCAATAGCTCATCGAC 59.241 55.000 0.00 0.00 0.00 4.20
3788 4888 1.076549 CTTTGCAGGCTACCCCCAA 59.923 57.895 0.00 0.00 0.00 4.12
3793 4893 3.575630 GCTTTTTACTTTGCAGGCTACC 58.424 45.455 0.00 0.00 0.00 3.18
3894 4994 6.372659 GTCATGCCTAATTGTTCAAAGAGAGA 59.627 38.462 0.00 0.00 0.00 3.10
3898 4998 5.076182 TGGTCATGCCTAATTGTTCAAAGA 58.924 37.500 7.54 0.00 38.35 2.52
3901 5001 3.763360 CCTGGTCATGCCTAATTGTTCAA 59.237 43.478 7.54 0.00 38.35 2.69
3905 5005 3.456380 AACCTGGTCATGCCTAATTGT 57.544 42.857 0.00 0.00 38.35 2.71
3918 5018 6.990908 ACAACTCTACTACTTAAACCTGGT 57.009 37.500 0.00 0.00 0.00 4.00
3923 5026 8.883954 ACCTTCAACAACTCTACTACTTAAAC 57.116 34.615 0.00 0.00 0.00 2.01
4014 5118 4.080356 AGCTGGAAAGGCAGATACATACAA 60.080 41.667 0.00 0.00 0.00 2.41
4183 5302 4.503817 GGCATGTGATGGTAAGATAGCAGA 60.504 45.833 0.00 0.00 39.81 4.26
4217 5336 5.387788 CCCCTTGATGAATCCATGTCATTA 58.612 41.667 0.00 0.00 35.84 1.90
4282 7162 4.147653 CGACGAATCGTTAATTAATCCGCT 59.852 41.667 10.45 0.00 43.66 5.52
4283 7163 4.371882 CGACGAATCGTTAATTAATCCGC 58.628 43.478 10.45 0.00 43.66 5.54
4297 7177 0.931005 GGGAAGATGCACGACGAATC 59.069 55.000 0.00 1.83 0.00 2.52
4298 7178 0.462047 GGGGAAGATGCACGACGAAT 60.462 55.000 0.00 0.00 0.00 3.34
4299 7179 1.079405 GGGGAAGATGCACGACGAA 60.079 57.895 0.00 0.00 0.00 3.85
4303 7183 1.271856 TACAAGGGGAAGATGCACGA 58.728 50.000 0.00 0.00 0.00 4.35
4315 7195 3.024547 TCGTCTCAGGAGAATACAAGGG 58.975 50.000 0.00 0.00 39.48 3.95
4338 7219 7.323895 CGAACACCTACGTTCATGAAGATATAG 59.676 40.741 8.80 8.07 44.54 1.31
4339 7221 7.012610 TCGAACACCTACGTTCATGAAGATATA 59.987 37.037 8.80 0.00 44.54 0.86
4342 7224 4.082408 TCGAACACCTACGTTCATGAAGAT 60.082 41.667 8.80 2.35 44.54 2.40
4452 7338 0.329596 AGAGGATGCAACCCAAGGAC 59.670 55.000 9.78 0.00 0.00 3.85
4507 7393 3.676646 GCAACCATTTTCAGCATGTTCTC 59.323 43.478 0.00 0.00 37.40 2.87
4722 7617 7.928706 AGCAAGCATTCCAAAGTATACTACTAG 59.071 37.037 5.65 0.00 38.26 2.57
4723 7618 7.792032 AGCAAGCATTCCAAAGTATACTACTA 58.208 34.615 5.65 0.00 38.26 1.82
4724 7619 6.653989 AGCAAGCATTCCAAAGTATACTACT 58.346 36.000 5.65 0.00 41.73 2.57
4725 7620 6.927294 AGCAAGCATTCCAAAGTATACTAC 57.073 37.500 5.65 0.00 0.00 2.73
4726 7621 7.792032 AGTAGCAAGCATTCCAAAGTATACTA 58.208 34.615 5.65 0.00 0.00 1.82
4727 7622 6.653989 AGTAGCAAGCATTCCAAAGTATACT 58.346 36.000 0.00 0.00 0.00 2.12
4728 7623 6.927294 AGTAGCAAGCATTCCAAAGTATAC 57.073 37.500 0.00 0.00 0.00 1.47
4729 7624 7.561251 TGTAGTAGCAAGCATTCCAAAGTATA 58.439 34.615 0.00 0.00 0.00 1.47
4730 7625 6.414732 TGTAGTAGCAAGCATTCCAAAGTAT 58.585 36.000 0.00 0.00 0.00 2.12
4731 7626 5.800296 TGTAGTAGCAAGCATTCCAAAGTA 58.200 37.500 0.00 0.00 0.00 2.24
4732 7627 4.651778 TGTAGTAGCAAGCATTCCAAAGT 58.348 39.130 0.00 0.00 0.00 2.66
4733 7628 5.627499 TTGTAGTAGCAAGCATTCCAAAG 57.373 39.130 0.00 0.00 0.00 2.77
4734 7629 5.627499 CTTGTAGTAGCAAGCATTCCAAA 57.373 39.130 0.00 0.00 39.26 3.28
4789 8189 4.496360 GCTCAAGTAAACTCCTGTCTACC 58.504 47.826 0.00 0.00 0.00 3.18
4864 8301 4.276431 TGTTATTTCGGTTTTGGACCTGTC 59.724 41.667 0.00 0.00 46.92 3.51
4868 8305 4.387559 GCATTGTTATTTCGGTTTTGGACC 59.612 41.667 0.00 0.00 45.55 4.46
4975 8412 0.459489 TTGGCCTCAATAATTGCGCC 59.541 50.000 4.18 0.00 42.61 6.53
4992 8440 1.942657 CCACACGATTAGGGCATCTTG 59.057 52.381 0.00 0.00 0.00 3.02
5023 8471 2.717639 ATGCTAATGACAGGTGTCCC 57.282 50.000 7.64 0.00 44.15 4.46
5077 8525 1.534729 AAAGAAATGAGGGTCGTGCC 58.465 50.000 0.00 0.00 0.00 5.01
5081 8529 2.678336 GCTGGTAAAGAAATGAGGGTCG 59.322 50.000 0.00 0.00 0.00 4.79
5121 8597 7.048512 GCAGTAGTAGATTAAGGGTTGTTCAT 58.951 38.462 0.00 0.00 0.00 2.57
5145 8621 3.823330 GCATCCACAGCAGGCAGC 61.823 66.667 0.00 0.00 46.19 5.25
5146 8622 2.360726 TGCATCCACAGCAGGCAG 60.361 61.111 0.00 0.00 37.02 4.85
5167 8648 5.220529 GCAAAATGCAAATCAGGCACTAATC 60.221 40.000 0.00 0.00 45.23 1.75
5189 8670 2.373335 ACACACCCCTAACAATTGCA 57.627 45.000 5.05 0.00 0.00 4.08
5190 8671 4.076394 TCTAACACACCCCTAACAATTGC 58.924 43.478 5.05 0.00 0.00 3.56
5191 8672 5.710099 ACATCTAACACACCCCTAACAATTG 59.290 40.000 3.24 3.24 0.00 2.32
5236 8717 7.040686 GGATAACCTAAGCTTTGTCAAACTTCA 60.041 37.037 3.20 0.00 0.00 3.02
5237 8718 7.040686 TGGATAACCTAAGCTTTGTCAAACTTC 60.041 37.037 3.20 0.00 37.04 3.01
5286 8767 2.357009 CACTGCCCACTAATCAATCAGC 59.643 50.000 0.00 0.00 0.00 4.26
5333 8814 3.452627 TGCAAACCCCTAATCTCTCTCTC 59.547 47.826 0.00 0.00 0.00 3.20
5335 8816 3.914426 TGCAAACCCCTAATCTCTCTC 57.086 47.619 0.00 0.00 0.00 3.20
5337 8818 5.297569 AGTATGCAAACCCCTAATCTCTC 57.702 43.478 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.