Multiple sequence alignment - TraesCS6B01G439100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G439100 chr6B 100.000 3476 0 0 1 3476 704853985 704850510 0.000000e+00 6420.0
1 TraesCS6B01G439100 chr6B 98.380 864 11 3 2616 3476 408661273 408662136 0.000000e+00 1515.0
2 TraesCS6B01G439100 chr6D 93.108 1654 89 16 831 2469 452077107 452078750 0.000000e+00 2399.0
3 TraesCS6B01G439100 chr6D 93.543 1177 63 9 821 1995 462404756 462405921 0.000000e+00 1740.0
4 TraesCS6B01G439100 chr6D 88.889 225 17 4 2253 2469 462405922 462406146 1.590000e-68 270.0
5 TraesCS6B01G439100 chr6A 95.762 1463 44 5 993 2449 609157474 609158924 0.000000e+00 2342.0
6 TraesCS6B01G439100 chr5B 98.956 862 7 2 2617 3476 406871282 406870421 0.000000e+00 1541.0
7 TraesCS6B01G439100 chr5B 98.144 862 13 2 2617 3476 179226334 179227194 0.000000e+00 1500.0
8 TraesCS6B01G439100 chr5B 94.779 881 25 13 2617 3476 420716498 420717378 0.000000e+00 1352.0
9 TraesCS6B01G439100 chr5B 74.374 999 193 41 1355 2320 606301630 606302598 5.480000e-98 368.0
10 TraesCS6B01G439100 chr7B 98.840 862 9 1 2616 3476 528878816 528879677 0.000000e+00 1535.0
11 TraesCS6B01G439100 chr7B 94.796 884 20 16 2617 3476 68096714 68097595 0.000000e+00 1354.0
12 TraesCS6B01G439100 chr7B 78.346 254 41 10 417 659 221262015 221261765 6.010000e-33 152.0
13 TraesCS6B01G439100 chr2A 98.274 869 11 4 2609 3476 719453104 719453969 0.000000e+00 1519.0
14 TraesCS6B01G439100 chr2A 100.000 47 0 0 3104 3150 43380177 43380131 1.720000e-13 87.9
15 TraesCS6B01G439100 chr7A 97.945 876 12 6 2605 3476 171417952 171418825 0.000000e+00 1513.0
16 TraesCS6B01G439100 chr7A 84.242 679 51 27 2 660 35363866 35363224 8.250000e-171 610.0
17 TraesCS6B01G439100 chr7A 86.461 421 36 12 260 669 627117558 627117968 3.180000e-120 442.0
18 TraesCS6B01G439100 chr7A 87.469 399 30 11 271 658 686001610 686001221 3.180000e-120 442.0
19 TraesCS6B01G439100 chr4B 97.798 863 15 4 2617 3476 194218470 194219331 0.000000e+00 1485.0
20 TraesCS6B01G439100 chr3B 94.558 882 26 11 2617 3476 552477450 552478331 0.000000e+00 1343.0
21 TraesCS6B01G439100 chr3B 92.819 557 31 5 110 657 766101643 766102199 0.000000e+00 798.0
22 TraesCS6B01G439100 chr3B 76.352 795 130 45 1357 2113 795839886 795840660 1.180000e-99 374.0
23 TraesCS6B01G439100 chr3B 93.651 126 8 0 1 126 766101501 766101626 4.580000e-44 189.0
24 TraesCS6B01G439100 chr3B 74.631 406 78 19 1923 2320 130115290 130115678 4.650000e-34 156.0
25 TraesCS6B01G439100 chr4A 85.735 680 55 19 2 658 689631266 689630606 0.000000e+00 680.0
26 TraesCS6B01G439100 chr4A 83.099 71 7 4 591 658 598319822 598319754 3.750000e-05 60.2
27 TraesCS6B01G439100 chr5D 75.325 1001 180 45 1355 2320 491527759 491528727 5.370000e-113 418.0
28 TraesCS6B01G439100 chr5D 72.535 994 213 49 1358 2321 356090452 356091415 5.720000e-68 268.0
29 TraesCS6B01G439100 chr5D 73.050 705 143 31 1357 2027 1542432 1541741 4.550000e-49 206.0
30 TraesCS6B01G439100 chr5D 76.113 247 48 10 417 658 362589791 362590031 6.090000e-23 119.0
31 TraesCS6B01G439100 chr5A 74.474 999 192 42 1355 2320 613700670 613701638 1.180000e-99 374.0
32 TraesCS6B01G439100 chr5A 72.480 992 217 46 1358 2321 457790979 457791942 5.720000e-68 268.0
33 TraesCS6B01G439100 chr3A 76.575 730 123 35 1357 2053 724515610 724516324 1.190000e-94 357.0
34 TraesCS6B01G439100 chr3D 76.705 704 120 31 1357 2029 593236143 593236833 5.520000e-93 351.0
35 TraesCS6B01G439100 chr4D 82.661 248 26 13 417 652 333008714 333008956 1.640000e-48 204.0
36 TraesCS6B01G439100 chr2B 72.512 804 160 47 1538 2320 298515209 298514446 1.640000e-48 204.0
37 TraesCS6B01G439100 chrUn 72.080 702 155 26 1357 2027 146272474 146271783 4.610000e-39 172.0
38 TraesCS6B01G439100 chrUn 76.250 320 64 7 1714 2027 220230010 220230323 3.590000e-35 159.0
39 TraesCS6B01G439100 chr1B 97.143 35 1 0 662 696 161209656 161209690 3.750000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G439100 chr6B 704850510 704853985 3475 True 6420.0 6420 100.000 1 3476 1 chr6B.!!$R1 3475
1 TraesCS6B01G439100 chr6B 408661273 408662136 863 False 1515.0 1515 98.380 2616 3476 1 chr6B.!!$F1 860
2 TraesCS6B01G439100 chr6D 452077107 452078750 1643 False 2399.0 2399 93.108 831 2469 1 chr6D.!!$F1 1638
3 TraesCS6B01G439100 chr6D 462404756 462406146 1390 False 1005.0 1740 91.216 821 2469 2 chr6D.!!$F2 1648
4 TraesCS6B01G439100 chr6A 609157474 609158924 1450 False 2342.0 2342 95.762 993 2449 1 chr6A.!!$F1 1456
5 TraesCS6B01G439100 chr5B 406870421 406871282 861 True 1541.0 1541 98.956 2617 3476 1 chr5B.!!$R1 859
6 TraesCS6B01G439100 chr5B 179226334 179227194 860 False 1500.0 1500 98.144 2617 3476 1 chr5B.!!$F1 859
7 TraesCS6B01G439100 chr5B 420716498 420717378 880 False 1352.0 1352 94.779 2617 3476 1 chr5B.!!$F2 859
8 TraesCS6B01G439100 chr5B 606301630 606302598 968 False 368.0 368 74.374 1355 2320 1 chr5B.!!$F3 965
9 TraesCS6B01G439100 chr7B 528878816 528879677 861 False 1535.0 1535 98.840 2616 3476 1 chr7B.!!$F2 860
10 TraesCS6B01G439100 chr7B 68096714 68097595 881 False 1354.0 1354 94.796 2617 3476 1 chr7B.!!$F1 859
11 TraesCS6B01G439100 chr2A 719453104 719453969 865 False 1519.0 1519 98.274 2609 3476 1 chr2A.!!$F1 867
12 TraesCS6B01G439100 chr7A 171417952 171418825 873 False 1513.0 1513 97.945 2605 3476 1 chr7A.!!$F1 871
13 TraesCS6B01G439100 chr7A 35363224 35363866 642 True 610.0 610 84.242 2 660 1 chr7A.!!$R1 658
14 TraesCS6B01G439100 chr4B 194218470 194219331 861 False 1485.0 1485 97.798 2617 3476 1 chr4B.!!$F1 859
15 TraesCS6B01G439100 chr3B 552477450 552478331 881 False 1343.0 1343 94.558 2617 3476 1 chr3B.!!$F2 859
16 TraesCS6B01G439100 chr3B 766101501 766102199 698 False 493.5 798 93.235 1 657 2 chr3B.!!$F4 656
17 TraesCS6B01G439100 chr3B 795839886 795840660 774 False 374.0 374 76.352 1357 2113 1 chr3B.!!$F3 756
18 TraesCS6B01G439100 chr4A 689630606 689631266 660 True 680.0 680 85.735 2 658 1 chr4A.!!$R2 656
19 TraesCS6B01G439100 chr5D 491527759 491528727 968 False 418.0 418 75.325 1355 2320 1 chr5D.!!$F3 965
20 TraesCS6B01G439100 chr5D 356090452 356091415 963 False 268.0 268 72.535 1358 2321 1 chr5D.!!$F1 963
21 TraesCS6B01G439100 chr5D 1541741 1542432 691 True 206.0 206 73.050 1357 2027 1 chr5D.!!$R1 670
22 TraesCS6B01G439100 chr5A 613700670 613701638 968 False 374.0 374 74.474 1355 2320 1 chr5A.!!$F2 965
23 TraesCS6B01G439100 chr5A 457790979 457791942 963 False 268.0 268 72.480 1358 2321 1 chr5A.!!$F1 963
24 TraesCS6B01G439100 chr3A 724515610 724516324 714 False 357.0 357 76.575 1357 2053 1 chr3A.!!$F1 696
25 TraesCS6B01G439100 chr3D 593236143 593236833 690 False 351.0 351 76.705 1357 2029 1 chr3D.!!$F1 672
26 TraesCS6B01G439100 chr2B 298514446 298515209 763 True 204.0 204 72.512 1538 2320 1 chr2B.!!$R1 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 770 0.036105 ACGATAAAACCCACGGGACC 60.036 55.0 9.72 0.0 38.96 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2490 2600 0.107654 ATGTTTGACCGCCCTCTAGC 60.108 55.0 0.0 0.0 0.0 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.324943 CCTTTCAGTCCCATCACCGT 59.675 55.000 0.00 0.00 0.00 4.83
60 61 3.677284 CTGCTGAGCGCACCCAGAT 62.677 63.158 22.71 0.00 45.47 2.90
84 85 4.058124 CAACATTCGAGTCTTCAGGAACA 58.942 43.478 0.00 0.00 0.00 3.18
93 94 1.580845 CTTCAGGAACAGCAAGGCCG 61.581 60.000 0.00 0.00 0.00 6.13
128 163 2.814336 GCAACAAGAGAGAAACCGGATT 59.186 45.455 9.46 0.57 0.00 3.01
177 212 4.285003 TCCTCTCGTAATGGAACCTGAAAA 59.715 41.667 0.00 0.00 0.00 2.29
258 300 4.009675 AGAAAACTATTTGCGGATCTGCA 58.990 39.130 25.40 25.40 44.61 4.41
266 308 0.461548 TGCGGATCTGCAGGAACTAG 59.538 55.000 25.40 2.29 40.62 2.57
298 340 0.687757 ATGGAGCAACTCTAGCCCGA 60.688 55.000 0.00 0.00 0.00 5.14
316 358 3.118038 CCCGAAATCCTCCACTATTCCAA 60.118 47.826 0.00 0.00 0.00 3.53
411 453 1.678300 GAGGGACGACGAGGGTTCT 60.678 63.158 0.00 0.00 0.00 3.01
434 476 1.714541 GATCTGATCCCTGGCTCAGA 58.285 55.000 18.99 18.99 46.77 3.27
445 487 0.179100 TGGCTCAGATGCGCTTCTAC 60.179 55.000 23.65 15.98 0.00 2.59
536 578 4.018779 CCAAAGATACTGTTTCCTACCCCA 60.019 45.833 0.00 0.00 0.00 4.96
546 588 4.105697 TGTTTCCTACCCCATATTCCATCC 59.894 45.833 0.00 0.00 0.00 3.51
549 591 2.578021 CCTACCCCATATTCCATCCCAG 59.422 54.545 0.00 0.00 0.00 4.45
660 715 2.474266 CAAATCGCCACGTCCGTG 59.526 61.111 12.66 12.66 45.02 4.94
669 724 4.519182 ACGTCCGTGAAAAACCGT 57.481 50.000 0.00 0.00 0.00 4.83
670 725 2.300533 ACGTCCGTGAAAAACCGTC 58.699 52.632 0.00 0.00 0.00 4.79
671 726 0.179103 ACGTCCGTGAAAAACCGTCT 60.179 50.000 0.00 0.00 0.00 4.18
672 727 0.932399 CGTCCGTGAAAAACCGTCTT 59.068 50.000 0.00 0.00 0.00 3.01
673 728 2.126467 CGTCCGTGAAAAACCGTCTTA 58.874 47.619 0.00 0.00 0.00 2.10
674 729 2.097250 CGTCCGTGAAAAACCGTCTTAC 60.097 50.000 0.00 0.00 0.00 2.34
675 730 2.865551 GTCCGTGAAAAACCGTCTTACA 59.134 45.455 0.00 0.00 0.00 2.41
676 731 3.495753 GTCCGTGAAAAACCGTCTTACAT 59.504 43.478 0.00 0.00 0.00 2.29
677 732 3.742369 TCCGTGAAAAACCGTCTTACATC 59.258 43.478 0.00 0.00 0.00 3.06
678 733 3.495377 CCGTGAAAAACCGTCTTACATCA 59.505 43.478 0.00 0.00 0.00 3.07
679 734 4.153475 CCGTGAAAAACCGTCTTACATCAT 59.847 41.667 0.00 0.00 0.00 2.45
680 735 5.079406 CGTGAAAAACCGTCTTACATCATG 58.921 41.667 0.00 0.00 0.00 3.07
681 736 5.390613 GTGAAAAACCGTCTTACATCATGG 58.609 41.667 0.00 0.00 0.00 3.66
682 737 4.457603 TGAAAAACCGTCTTACATCATGGG 59.542 41.667 0.00 0.00 0.00 4.00
683 738 3.992943 AAACCGTCTTACATCATGGGA 57.007 42.857 0.00 0.00 0.00 4.37
684 739 2.981859 ACCGTCTTACATCATGGGAC 57.018 50.000 0.00 0.00 0.00 4.46
685 740 1.136305 ACCGTCTTACATCATGGGACG 59.864 52.381 17.42 17.42 45.92 4.79
686 741 1.852942 CGTCTTACATCATGGGACGG 58.147 55.000 16.90 4.66 43.69 4.79
687 742 1.407618 CGTCTTACATCATGGGACGGA 59.592 52.381 16.90 0.00 43.69 4.69
688 743 2.543861 CGTCTTACATCATGGGACGGAG 60.544 54.545 16.90 0.00 43.69 4.63
689 744 2.039418 TCTTACATCATGGGACGGAGG 58.961 52.381 0.00 0.00 0.00 4.30
690 745 2.039418 CTTACATCATGGGACGGAGGA 58.961 52.381 0.00 0.00 0.00 3.71
691 746 2.168458 TACATCATGGGACGGAGGAA 57.832 50.000 0.00 0.00 0.00 3.36
692 747 0.833287 ACATCATGGGACGGAGGAAG 59.167 55.000 0.00 0.00 0.00 3.46
693 748 0.833287 CATCATGGGACGGAGGAAGT 59.167 55.000 0.00 0.00 0.00 3.01
694 749 2.039418 CATCATGGGACGGAGGAAGTA 58.961 52.381 0.00 0.00 0.00 2.24
695 750 1.481871 TCATGGGACGGAGGAAGTAC 58.518 55.000 0.00 0.00 0.00 2.73
696 751 1.191535 CATGGGACGGAGGAAGTACA 58.808 55.000 0.00 0.00 0.00 2.90
697 752 1.134788 CATGGGACGGAGGAAGTACAC 60.135 57.143 0.00 0.00 0.00 2.90
698 753 1.246056 TGGGACGGAGGAAGTACACG 61.246 60.000 0.00 0.00 0.00 4.49
699 754 0.962356 GGGACGGAGGAAGTACACGA 60.962 60.000 0.00 0.00 0.00 4.35
700 755 1.101331 GGACGGAGGAAGTACACGAT 58.899 55.000 0.00 0.00 0.00 3.73
701 756 2.292267 GGACGGAGGAAGTACACGATA 58.708 52.381 0.00 0.00 0.00 2.92
702 757 2.684881 GGACGGAGGAAGTACACGATAA 59.315 50.000 0.00 0.00 0.00 1.75
703 758 3.129287 GGACGGAGGAAGTACACGATAAA 59.871 47.826 0.00 0.00 0.00 1.40
704 759 4.380867 GGACGGAGGAAGTACACGATAAAA 60.381 45.833 0.00 0.00 0.00 1.52
705 760 4.488879 ACGGAGGAAGTACACGATAAAAC 58.511 43.478 0.00 0.00 0.00 2.43
706 761 3.861689 CGGAGGAAGTACACGATAAAACC 59.138 47.826 0.00 0.00 0.00 3.27
707 762 4.186926 GGAGGAAGTACACGATAAAACCC 58.813 47.826 0.00 0.00 0.00 4.11
708 763 4.322953 GGAGGAAGTACACGATAAAACCCA 60.323 45.833 0.00 0.00 0.00 4.51
709 764 4.572909 AGGAAGTACACGATAAAACCCAC 58.427 43.478 0.00 0.00 0.00 4.61
710 765 3.368843 GGAAGTACACGATAAAACCCACG 59.631 47.826 0.00 0.00 0.00 4.94
711 766 2.963432 AGTACACGATAAAACCCACGG 58.037 47.619 0.00 0.00 0.00 4.94
712 767 2.001872 GTACACGATAAAACCCACGGG 58.998 52.381 0.00 0.00 42.03 5.28
713 768 0.686224 ACACGATAAAACCCACGGGA 59.314 50.000 9.72 0.00 38.96 5.14
714 769 1.081094 CACGATAAAACCCACGGGAC 58.919 55.000 9.72 0.00 38.96 4.46
715 770 0.036105 ACGATAAAACCCACGGGACC 60.036 55.000 9.72 0.00 38.96 4.46
716 771 1.085501 CGATAAAACCCACGGGACCG 61.086 60.000 9.72 9.56 46.03 4.79
726 781 3.304721 CGGGACCGTACACCACCA 61.305 66.667 1.86 0.00 34.35 4.17
727 782 2.870119 CGGGACCGTACACCACCAA 61.870 63.158 1.86 0.00 34.35 3.67
728 783 1.681076 GGGACCGTACACCACCAAT 59.319 57.895 0.00 0.00 0.00 3.16
729 784 0.903942 GGGACCGTACACCACCAATA 59.096 55.000 0.00 0.00 0.00 1.90
730 785 1.134610 GGGACCGTACACCACCAATAG 60.135 57.143 0.00 0.00 0.00 1.73
731 786 1.551883 GGACCGTACACCACCAATAGT 59.448 52.381 0.00 0.00 0.00 2.12
732 787 2.027837 GGACCGTACACCACCAATAGTT 60.028 50.000 0.00 0.00 0.00 2.24
733 788 3.256558 GACCGTACACCACCAATAGTTC 58.743 50.000 0.00 0.00 0.00 3.01
734 789 2.633967 ACCGTACACCACCAATAGTTCA 59.366 45.455 0.00 0.00 0.00 3.18
735 790 2.997986 CCGTACACCACCAATAGTTCAC 59.002 50.000 0.00 0.00 0.00 3.18
736 791 3.555377 CCGTACACCACCAATAGTTCACA 60.555 47.826 0.00 0.00 0.00 3.58
737 792 4.250464 CGTACACCACCAATAGTTCACAT 58.750 43.478 0.00 0.00 0.00 3.21
738 793 4.328983 CGTACACCACCAATAGTTCACATC 59.671 45.833 0.00 0.00 0.00 3.06
739 794 4.640771 ACACCACCAATAGTTCACATCT 57.359 40.909 0.00 0.00 0.00 2.90
740 795 5.755409 ACACCACCAATAGTTCACATCTA 57.245 39.130 0.00 0.00 0.00 1.98
741 796 6.121776 ACACCACCAATAGTTCACATCTAA 57.878 37.500 0.00 0.00 0.00 2.10
742 797 6.539173 ACACCACCAATAGTTCACATCTAAA 58.461 36.000 0.00 0.00 0.00 1.85
743 798 6.430000 ACACCACCAATAGTTCACATCTAAAC 59.570 38.462 0.00 0.00 0.00 2.01
744 799 5.642063 ACCACCAATAGTTCACATCTAAACG 59.358 40.000 0.00 0.00 0.00 3.60
745 800 5.447279 CCACCAATAGTTCACATCTAAACGC 60.447 44.000 0.00 0.00 0.00 4.84
746 801 4.328983 ACCAATAGTTCACATCTAAACGCG 59.671 41.667 3.53 3.53 0.00 6.01
747 802 4.565166 CCAATAGTTCACATCTAAACGCGA 59.435 41.667 15.93 0.00 0.00 5.87
748 803 5.234329 CCAATAGTTCACATCTAAACGCGAT 59.766 40.000 15.93 0.00 0.00 4.58
749 804 6.419710 CCAATAGTTCACATCTAAACGCGATA 59.580 38.462 15.93 4.46 0.00 2.92
750 805 7.116376 CCAATAGTTCACATCTAAACGCGATAT 59.884 37.037 15.93 0.00 0.00 1.63
751 806 8.487970 CAATAGTTCACATCTAAACGCGATATT 58.512 33.333 15.93 7.50 0.00 1.28
752 807 6.512177 AGTTCACATCTAAACGCGATATTC 57.488 37.500 15.93 0.00 0.00 1.75
753 808 6.273825 AGTTCACATCTAAACGCGATATTCT 58.726 36.000 15.93 0.00 0.00 2.40
754 809 6.757010 AGTTCACATCTAAACGCGATATTCTT 59.243 34.615 15.93 0.00 0.00 2.52
755 810 6.749216 TCACATCTAAACGCGATATTCTTC 57.251 37.500 15.93 0.00 0.00 2.87
756 811 6.504398 TCACATCTAAACGCGATATTCTTCT 58.496 36.000 15.93 0.00 0.00 2.85
757 812 6.417930 TCACATCTAAACGCGATATTCTTCTG 59.582 38.462 15.93 1.36 0.00 3.02
758 813 6.417930 CACATCTAAACGCGATATTCTTCTGA 59.582 38.462 15.93 0.00 0.00 3.27
759 814 6.978659 ACATCTAAACGCGATATTCTTCTGAA 59.021 34.615 15.93 0.00 36.54 3.02
760 815 7.653713 ACATCTAAACGCGATATTCTTCTGAAT 59.346 33.333 15.93 0.00 44.32 2.57
761 816 8.491152 CATCTAAACGCGATATTCTTCTGAATT 58.509 33.333 15.93 0.00 42.37 2.17
762 817 9.692749 ATCTAAACGCGATATTCTTCTGAATTA 57.307 29.630 15.93 0.00 42.37 1.40
763 818 9.692749 TCTAAACGCGATATTCTTCTGAATTAT 57.307 29.630 15.93 0.00 42.37 1.28
766 821 9.651718 AAACGCGATATTCTTCTGAATTATTTC 57.348 29.630 15.93 0.00 42.37 2.17
767 822 7.502339 ACGCGATATTCTTCTGAATTATTTCG 58.498 34.615 15.93 14.38 42.37 3.46
768 823 7.381408 ACGCGATATTCTTCTGAATTATTTCGA 59.619 33.333 15.93 0.00 42.37 3.71
769 824 7.680439 CGCGATATTCTTCTGAATTATTTCGAC 59.320 37.037 18.97 13.00 42.37 4.20
770 825 8.487970 GCGATATTCTTCTGAATTATTTCGACA 58.512 33.333 18.97 0.00 42.37 4.35
771 826 9.784824 CGATATTCTTCTGAATTATTTCGACAC 57.215 33.333 13.90 0.00 42.37 3.67
773 828 6.737254 TTCTTCTGAATTATTTCGACACCC 57.263 37.500 0.00 0.00 34.39 4.61
774 829 5.800296 TCTTCTGAATTATTTCGACACCCA 58.200 37.500 0.00 0.00 34.39 4.51
775 830 6.234920 TCTTCTGAATTATTTCGACACCCAA 58.765 36.000 0.00 0.00 34.39 4.12
776 831 5.873179 TCTGAATTATTTCGACACCCAAC 57.127 39.130 0.00 0.00 34.39 3.77
777 832 5.309638 TCTGAATTATTTCGACACCCAACA 58.690 37.500 0.00 0.00 34.39 3.33
778 833 5.765677 TCTGAATTATTTCGACACCCAACAA 59.234 36.000 0.00 0.00 34.39 2.83
779 834 6.007936 TGAATTATTTCGACACCCAACAAG 57.992 37.500 0.00 0.00 34.39 3.16
780 835 5.533154 TGAATTATTTCGACACCCAACAAGT 59.467 36.000 0.00 0.00 34.39 3.16
781 836 6.711194 TGAATTATTTCGACACCCAACAAGTA 59.289 34.615 0.00 0.00 34.39 2.24
782 837 7.228906 TGAATTATTTCGACACCCAACAAGTAA 59.771 33.333 0.00 0.00 34.39 2.24
783 838 7.696992 ATTATTTCGACACCCAACAAGTAAT 57.303 32.000 0.00 0.00 0.00 1.89
784 839 5.622770 ATTTCGACACCCAACAAGTAATC 57.377 39.130 0.00 0.00 0.00 1.75
785 840 3.048337 TCGACACCCAACAAGTAATCC 57.952 47.619 0.00 0.00 0.00 3.01
786 841 2.081462 CGACACCCAACAAGTAATCCC 58.919 52.381 0.00 0.00 0.00 3.85
787 842 2.443416 GACACCCAACAAGTAATCCCC 58.557 52.381 0.00 0.00 0.00 4.81
788 843 2.041216 GACACCCAACAAGTAATCCCCT 59.959 50.000 0.00 0.00 0.00 4.79
789 844 2.041216 ACACCCAACAAGTAATCCCCTC 59.959 50.000 0.00 0.00 0.00 4.30
790 845 2.308866 CACCCAACAAGTAATCCCCTCT 59.691 50.000 0.00 0.00 0.00 3.69
791 846 2.576648 ACCCAACAAGTAATCCCCTCTC 59.423 50.000 0.00 0.00 0.00 3.20
792 847 2.420129 CCCAACAAGTAATCCCCTCTCG 60.420 54.545 0.00 0.00 0.00 4.04
793 848 2.500098 CCAACAAGTAATCCCCTCTCGA 59.500 50.000 0.00 0.00 0.00 4.04
794 849 3.430929 CCAACAAGTAATCCCCTCTCGAG 60.431 52.174 5.93 5.93 0.00 4.04
795 850 3.383698 ACAAGTAATCCCCTCTCGAGA 57.616 47.619 15.70 15.70 0.00 4.04
796 851 3.292460 ACAAGTAATCCCCTCTCGAGAG 58.708 50.000 31.55 31.55 41.71 3.20
797 852 1.989706 AGTAATCCCCTCTCGAGAGC 58.010 55.000 32.79 18.93 40.75 4.09
798 853 1.497286 AGTAATCCCCTCTCGAGAGCT 59.503 52.381 32.79 20.70 40.75 4.09
799 854 1.883926 GTAATCCCCTCTCGAGAGCTC 59.116 57.143 32.79 5.27 40.75 4.09
800 855 0.260230 AATCCCCTCTCGAGAGCTCA 59.740 55.000 32.79 19.56 40.75 4.26
801 856 0.467290 ATCCCCTCTCGAGAGCTCAC 60.467 60.000 32.79 9.07 40.75 3.51
802 857 2.477176 CCCCTCTCGAGAGCTCACG 61.477 68.421 32.79 25.12 40.75 4.35
803 858 2.477176 CCCTCTCGAGAGCTCACGG 61.477 68.421 32.79 24.36 40.75 4.94
804 859 2.407210 CTCTCGAGAGCTCACGGC 59.593 66.667 28.40 9.37 42.19 5.68
813 868 2.430244 GCTCACGGCGTCGAAAGA 60.430 61.111 20.03 10.24 40.11 2.52
814 869 2.437343 GCTCACGGCGTCGAAAGAG 61.437 63.158 20.03 20.42 43.49 2.85
815 870 2.430244 TCACGGCGTCGAAAGAGC 60.430 61.111 20.03 0.00 43.49 4.09
816 871 3.827784 CACGGCGTCGAAAGAGCG 61.828 66.667 20.03 0.00 43.49 5.03
817 872 4.338539 ACGGCGTCGAAAGAGCGT 62.339 61.111 20.03 0.00 43.49 5.07
818 873 3.827784 CGGCGTCGAAAGAGCGTG 61.828 66.667 1.44 0.00 43.49 5.34
819 874 2.733593 GGCGTCGAAAGAGCGTGT 60.734 61.111 0.00 0.00 43.49 4.49
820 875 2.465920 GCGTCGAAAGAGCGTGTG 59.534 61.111 0.00 0.00 43.49 3.82
821 876 2.300787 GCGTCGAAAGAGCGTGTGT 61.301 57.895 0.00 0.00 43.49 3.72
822 877 1.482955 CGTCGAAAGAGCGTGTGTG 59.517 57.895 0.00 0.00 43.49 3.82
823 878 1.201825 GTCGAAAGAGCGTGTGTGC 59.798 57.895 0.00 0.00 43.49 4.57
824 879 2.168621 CGAAAGAGCGTGTGTGCG 59.831 61.111 0.00 0.00 40.67 5.34
832 887 3.043713 CGTGTGTGCGCATGAGGT 61.044 61.111 15.91 0.00 0.00 3.85
833 888 2.557805 GTGTGTGCGCATGAGGTG 59.442 61.111 15.91 0.00 0.00 4.00
834 889 1.960763 GTGTGTGCGCATGAGGTGA 60.961 57.895 15.91 0.00 0.00 4.02
835 890 1.227793 TGTGTGCGCATGAGGTGAA 60.228 52.632 15.91 0.00 0.00 3.18
836 891 0.817229 TGTGTGCGCATGAGGTGAAA 60.817 50.000 15.91 0.00 0.00 2.69
837 892 0.310543 GTGTGCGCATGAGGTGAAAA 59.689 50.000 15.91 0.00 0.00 2.29
838 893 0.592637 TGTGCGCATGAGGTGAAAAG 59.407 50.000 15.91 0.00 0.00 2.27
839 894 0.109597 GTGCGCATGAGGTGAAAAGG 60.110 55.000 15.91 0.00 0.00 3.11
840 895 1.243342 TGCGCATGAGGTGAAAAGGG 61.243 55.000 5.66 0.00 0.00 3.95
841 896 1.244019 GCGCATGAGGTGAAAAGGGT 61.244 55.000 0.30 0.00 0.00 4.34
842 897 0.804989 CGCATGAGGTGAAAAGGGTC 59.195 55.000 0.00 0.00 0.00 4.46
846 901 2.358322 TGAGGTGAAAAGGGTCAACC 57.642 50.000 0.00 0.00 35.71 3.77
878 933 0.749454 CCCGCCATTTTCCTCTCCTG 60.749 60.000 0.00 0.00 0.00 3.86
883 938 2.943199 GCCATTTTCCTCTCCTGTCCTG 60.943 54.545 0.00 0.00 0.00 3.86
885 940 3.604582 CATTTTCCTCTCCTGTCCTGTC 58.395 50.000 0.00 0.00 0.00 3.51
887 942 0.487325 TTCCTCTCCTGTCCTGTCCA 59.513 55.000 0.00 0.00 0.00 4.02
894 949 0.391661 CCTGTCCTGTCCATTCCACG 60.392 60.000 0.00 0.00 0.00 4.94
895 950 1.003839 TGTCCTGTCCATTCCACGC 60.004 57.895 0.00 0.00 0.00 5.34
917 972 4.880426 GGGAGGATGAGGGGCCGA 62.880 72.222 0.00 0.00 0.00 5.54
918 973 3.551407 GGAGGATGAGGGGCCGAC 61.551 72.222 0.00 0.00 0.00 4.79
919 974 3.917760 GAGGATGAGGGGCCGACG 61.918 72.222 0.00 0.00 0.00 5.12
946 1005 3.842923 CGAGCGCCACCAGATCCT 61.843 66.667 2.29 0.00 0.00 3.24
952 1011 0.806102 CGCCACCAGATCCTAACGTG 60.806 60.000 0.00 0.00 0.00 4.49
960 1019 3.074412 CAGATCCTAACGTGCCAAAACT 58.926 45.455 0.00 0.00 0.00 2.66
964 1023 3.140623 TCCTAACGTGCCAAAACTAACC 58.859 45.455 0.00 0.00 0.00 2.85
978 1037 3.993376 TAACCACGATCACGCCGGC 62.993 63.158 19.07 19.07 43.96 6.13
991 1050 4.082523 CCGGCCGAAGCAAGGAGA 62.083 66.667 30.73 0.00 42.56 3.71
992 1051 2.047274 CGGCCGAAGCAAGGAGAA 60.047 61.111 24.07 0.00 42.56 2.87
993 1052 2.391389 CGGCCGAAGCAAGGAGAAC 61.391 63.158 24.07 0.00 42.56 3.01
994 1053 1.302511 GGCCGAAGCAAGGAGAACA 60.303 57.895 0.00 0.00 42.56 3.18
1098 1158 3.934391 GACCTCCGCCGTTGACCTG 62.934 68.421 0.00 0.00 0.00 4.00
1886 1981 1.077858 GCCTCCTCAAGAAGCTGGG 60.078 63.158 0.00 0.00 0.00 4.45
2337 2439 2.739932 CGCCAAGATCTCCGACAAGAAT 60.740 50.000 0.00 0.00 0.00 2.40
2351 2453 2.089980 CAAGAATGCCTCCACCAAGAG 58.910 52.381 0.00 0.00 0.00 2.85
2431 2539 3.606065 CTGCTGCTCGCCTTGTTGC 62.606 63.158 0.00 0.00 38.05 4.17
2469 2579 4.025979 GTGATGACGACGGGTTTTATCATC 60.026 45.833 12.77 12.77 41.74 2.92
2470 2580 3.596310 TGACGACGGGTTTTATCATCA 57.404 42.857 0.00 0.00 0.00 3.07
2471 2581 4.131649 TGACGACGGGTTTTATCATCAT 57.868 40.909 0.00 0.00 0.00 2.45
2472 2582 3.868661 TGACGACGGGTTTTATCATCATG 59.131 43.478 0.00 0.00 0.00 3.07
2473 2583 3.869065 ACGACGGGTTTTATCATCATGT 58.131 40.909 0.00 0.00 0.00 3.21
2474 2584 5.013568 ACGACGGGTTTTATCATCATGTA 57.986 39.130 0.00 0.00 0.00 2.29
2475 2585 5.047847 ACGACGGGTTTTATCATCATGTAG 58.952 41.667 0.00 0.00 0.00 2.74
2476 2586 5.047847 CGACGGGTTTTATCATCATGTAGT 58.952 41.667 0.00 0.00 0.00 2.73
2477 2587 6.183360 ACGACGGGTTTTATCATCATGTAGTA 60.183 38.462 0.00 0.00 0.00 1.82
2478 2588 6.362551 CGACGGGTTTTATCATCATGTAGTAG 59.637 42.308 0.00 0.00 0.00 2.57
2479 2589 5.989777 ACGGGTTTTATCATCATGTAGTAGC 59.010 40.000 0.00 0.00 0.00 3.58
2480 2590 6.183360 ACGGGTTTTATCATCATGTAGTAGCT 60.183 38.462 0.00 0.00 0.00 3.32
2481 2591 7.014905 ACGGGTTTTATCATCATGTAGTAGCTA 59.985 37.037 0.00 0.00 0.00 3.32
2482 2592 7.542477 CGGGTTTTATCATCATGTAGTAGCTAG 59.458 40.741 0.00 0.00 0.00 3.42
2483 2593 7.332182 GGGTTTTATCATCATGTAGTAGCTAGC 59.668 40.741 6.62 6.62 0.00 3.42
2484 2594 8.091449 GGTTTTATCATCATGTAGTAGCTAGCT 58.909 37.037 23.12 23.12 0.00 3.32
2500 2610 1.880186 GCTAGCTAGCTAGAGGGCG 59.120 63.158 42.59 24.05 46.56 6.13
2501 2611 1.591504 GCTAGCTAGCTAGAGGGCGG 61.592 65.000 42.59 23.42 46.56 6.13
2502 2612 0.250989 CTAGCTAGCTAGAGGGCGGT 60.251 60.000 37.99 8.39 46.56 5.68
2503 2613 0.250814 TAGCTAGCTAGAGGGCGGTC 60.251 60.000 25.15 3.82 37.29 4.79
2504 2614 1.828660 GCTAGCTAGAGGGCGGTCA 60.829 63.158 25.15 0.00 37.29 4.02
2505 2615 1.392710 GCTAGCTAGAGGGCGGTCAA 61.393 60.000 25.15 0.00 37.29 3.18
2506 2616 1.112113 CTAGCTAGAGGGCGGTCAAA 58.888 55.000 16.15 0.00 37.29 2.69
2507 2617 0.822164 TAGCTAGAGGGCGGTCAAAC 59.178 55.000 0.00 0.00 37.29 2.93
2508 2618 1.192146 AGCTAGAGGGCGGTCAAACA 61.192 55.000 0.00 0.00 37.29 2.83
2509 2619 0.107654 GCTAGAGGGCGGTCAAACAT 60.108 55.000 0.00 0.00 0.00 2.71
2510 2620 1.941325 CTAGAGGGCGGTCAAACATC 58.059 55.000 0.00 0.00 0.00 3.06
2511 2621 0.174845 TAGAGGGCGGTCAAACATCG 59.825 55.000 0.00 0.00 0.00 3.84
2512 2622 2.046314 AGGGCGGTCAAACATCGG 60.046 61.111 0.00 0.00 0.00 4.18
2513 2623 2.046700 GGGCGGTCAAACATCGGA 60.047 61.111 0.00 0.00 0.00 4.55
2514 2624 2.106683 GGGCGGTCAAACATCGGAG 61.107 63.158 0.00 0.00 0.00 4.63
2515 2625 2.750888 GGCGGTCAAACATCGGAGC 61.751 63.158 0.00 0.00 0.00 4.70
2516 2626 3.081133 CGGTCAAACATCGGAGCG 58.919 61.111 0.00 0.00 46.48 5.03
2517 2627 3.486263 GGTCAAACATCGGAGCGG 58.514 61.111 0.00 0.00 0.00 5.52
2518 2628 1.079405 GGTCAAACATCGGAGCGGA 60.079 57.895 0.00 0.00 0.00 5.54
2519 2629 1.084370 GGTCAAACATCGGAGCGGAG 61.084 60.000 0.00 0.00 0.00 4.63
2534 2644 4.388499 GAGCGGGGGAGCAACGAA 62.388 66.667 0.00 0.00 40.15 3.85
2535 2645 3.682292 GAGCGGGGGAGCAACGAAT 62.682 63.158 0.00 0.00 40.15 3.34
2536 2646 3.202706 GCGGGGGAGCAACGAATC 61.203 66.667 0.00 0.00 37.05 2.52
2537 2647 2.513897 CGGGGGAGCAACGAATCC 60.514 66.667 0.00 0.00 34.64 3.01
2538 2648 2.513897 GGGGGAGCAACGAATCCG 60.514 66.667 0.00 0.00 42.50 4.18
2539 2649 2.582436 GGGGAGCAACGAATCCGA 59.418 61.111 0.00 0.00 39.50 4.55
2540 2650 1.146263 GGGGAGCAACGAATCCGAT 59.854 57.895 0.00 0.00 39.50 4.18
2541 2651 0.880718 GGGGAGCAACGAATCCGATC 60.881 60.000 0.00 0.00 39.50 3.69
2542 2652 0.179084 GGGAGCAACGAATCCGATCA 60.179 55.000 0.00 0.00 39.50 2.92
2543 2653 1.541233 GGGAGCAACGAATCCGATCAT 60.541 52.381 0.00 0.00 39.50 2.45
2544 2654 2.213499 GGAGCAACGAATCCGATCATT 58.787 47.619 0.00 0.00 39.50 2.57
2545 2655 2.221981 GGAGCAACGAATCCGATCATTC 59.778 50.000 0.00 0.00 39.50 2.67
2546 2656 2.866156 GAGCAACGAATCCGATCATTCA 59.134 45.455 6.59 0.00 39.50 2.57
2547 2657 3.470709 AGCAACGAATCCGATCATTCAT 58.529 40.909 6.59 0.00 39.50 2.57
2548 2658 3.879295 AGCAACGAATCCGATCATTCATT 59.121 39.130 6.59 0.00 39.50 2.57
2549 2659 4.336433 AGCAACGAATCCGATCATTCATTT 59.664 37.500 6.59 0.00 39.50 2.32
2550 2660 5.036737 GCAACGAATCCGATCATTCATTTT 58.963 37.500 6.59 0.00 39.50 1.82
2551 2661 5.052172 GCAACGAATCCGATCATTCATTTTG 60.052 40.000 6.59 6.86 39.50 2.44
2552 2662 4.601019 ACGAATCCGATCATTCATTTTGC 58.399 39.130 6.59 0.00 39.50 3.68
2553 2663 4.336433 ACGAATCCGATCATTCATTTTGCT 59.664 37.500 6.59 0.00 39.50 3.91
2554 2664 5.163622 ACGAATCCGATCATTCATTTTGCTT 60.164 36.000 6.59 0.00 39.50 3.91
2555 2665 5.172591 CGAATCCGATCATTCATTTTGCTTG 59.827 40.000 6.59 0.00 38.22 4.01
2556 2666 5.840243 ATCCGATCATTCATTTTGCTTGA 57.160 34.783 0.00 0.00 0.00 3.02
2557 2667 4.985413 TCCGATCATTCATTTTGCTTGAC 58.015 39.130 0.00 0.00 0.00 3.18
2558 2668 4.701651 TCCGATCATTCATTTTGCTTGACT 59.298 37.500 0.00 0.00 0.00 3.41
2559 2669 5.879777 TCCGATCATTCATTTTGCTTGACTA 59.120 36.000 0.00 0.00 0.00 2.59
2560 2670 5.967674 CCGATCATTCATTTTGCTTGACTAC 59.032 40.000 0.00 0.00 0.00 2.73
2561 2671 5.674148 CGATCATTCATTTTGCTTGACTACG 59.326 40.000 0.00 0.00 0.00 3.51
2562 2672 5.940192 TCATTCATTTTGCTTGACTACGT 57.060 34.783 0.00 0.00 0.00 3.57
2563 2673 7.464045 CGATCATTCATTTTGCTTGACTACGTA 60.464 37.037 0.00 0.00 0.00 3.57
2564 2674 6.827641 TCATTCATTTTGCTTGACTACGTAC 58.172 36.000 0.00 0.00 0.00 3.67
2565 2675 6.649141 TCATTCATTTTGCTTGACTACGTACT 59.351 34.615 0.00 0.00 0.00 2.73
2566 2676 5.839262 TCATTTTGCTTGACTACGTACTG 57.161 39.130 0.00 0.00 0.00 2.74
2567 2677 5.294356 TCATTTTGCTTGACTACGTACTGT 58.706 37.500 0.00 0.00 0.00 3.55
2568 2678 5.404366 TCATTTTGCTTGACTACGTACTGTC 59.596 40.000 7.78 7.78 0.00 3.51
2569 2679 3.994204 TTGCTTGACTACGTACTGTCA 57.006 42.857 12.25 12.25 40.86 3.58
2570 2680 4.514781 TTGCTTGACTACGTACTGTCAT 57.485 40.909 15.84 0.00 41.93 3.06
2571 2681 4.092771 TGCTTGACTACGTACTGTCATC 57.907 45.455 15.84 12.03 41.93 2.92
2572 2682 3.099362 GCTTGACTACGTACTGTCATCG 58.901 50.000 15.84 11.94 41.93 3.84
2573 2683 3.181513 GCTTGACTACGTACTGTCATCGA 60.182 47.826 15.84 3.89 41.93 3.59
2574 2684 4.496010 GCTTGACTACGTACTGTCATCGAT 60.496 45.833 15.84 0.00 41.93 3.59
2575 2685 4.790810 TGACTACGTACTGTCATCGATC 57.209 45.455 12.25 0.00 38.15 3.69
2576 2686 4.186159 TGACTACGTACTGTCATCGATCA 58.814 43.478 12.25 0.00 38.15 2.92
2577 2687 4.033702 TGACTACGTACTGTCATCGATCAC 59.966 45.833 12.25 0.00 38.15 3.06
2578 2688 4.190001 ACTACGTACTGTCATCGATCACT 58.810 43.478 0.00 0.00 0.00 3.41
2579 2689 4.634883 ACTACGTACTGTCATCGATCACTT 59.365 41.667 0.00 0.00 0.00 3.16
2580 2690 4.436242 ACGTACTGTCATCGATCACTTT 57.564 40.909 0.00 0.00 0.00 2.66
2581 2691 4.806330 ACGTACTGTCATCGATCACTTTT 58.194 39.130 0.00 0.00 0.00 2.27
2582 2692 5.227908 ACGTACTGTCATCGATCACTTTTT 58.772 37.500 0.00 0.00 0.00 1.94
2583 2693 5.345202 ACGTACTGTCATCGATCACTTTTTC 59.655 40.000 0.00 0.00 0.00 2.29
2584 2694 5.573282 CGTACTGTCATCGATCACTTTTTCT 59.427 40.000 0.00 0.00 0.00 2.52
2585 2695 6.089551 CGTACTGTCATCGATCACTTTTTCTT 59.910 38.462 0.00 0.00 0.00 2.52
2586 2696 7.272731 CGTACTGTCATCGATCACTTTTTCTTA 59.727 37.037 0.00 0.00 0.00 2.10
2587 2697 9.088512 GTACTGTCATCGATCACTTTTTCTTAT 57.911 33.333 0.00 0.00 0.00 1.73
2589 2699 9.307121 ACTGTCATCGATCACTTTTTCTTATAG 57.693 33.333 0.00 0.00 0.00 1.31
2590 2700 9.521503 CTGTCATCGATCACTTTTTCTTATAGA 57.478 33.333 0.00 0.00 0.00 1.98
2591 2701 9.869757 TGTCATCGATCACTTTTTCTTATAGAA 57.130 29.630 0.00 0.00 31.28 2.10
2705 2817 2.714808 AGGTAAGTTTCTGTCCCCCTT 58.285 47.619 0.00 0.00 0.00 3.95
2748 2861 1.180029 GCAATCACAACCTGCTCCAT 58.820 50.000 0.00 0.00 33.20 3.41
2856 2969 4.608170 AGAGAGACATCTTCTTCTCCCT 57.392 45.455 0.00 0.00 39.36 4.20
3102 3216 9.173021 TGTGTTTCGTCCTATTTTCATATGAAT 57.827 29.630 18.61 7.80 33.54 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.897326 TCCTGAAGACTCGAATGTTGGA 59.103 45.455 0.00 0.00 0.00 3.53
93 94 1.367471 GTTGCCCAACAAAGGAGCC 59.633 57.895 6.29 0.00 40.82 4.70
128 163 2.023673 CTGACAACCTTGAGCAACCAA 58.976 47.619 0.00 0.00 0.00 3.67
177 212 1.112315 TGGCGGCCATTGTTGTCTTT 61.112 50.000 19.77 0.00 0.00 2.52
250 292 2.158842 ACATGCTAGTTCCTGCAGATCC 60.159 50.000 17.39 1.48 42.74 3.36
258 300 1.676014 GCCGTTGACATGCTAGTTCCT 60.676 52.381 0.00 0.00 0.00 3.36
266 308 1.430632 CTCCATGCCGTTGACATGC 59.569 57.895 0.00 0.00 42.89 4.06
298 340 5.449553 GGTGATTGGAATAGTGGAGGATTT 58.550 41.667 0.00 0.00 0.00 2.17
411 453 2.811514 GCCAGGGATCAGATCGGCA 61.812 63.158 18.28 0.00 39.38 5.69
434 476 0.032678 CCAGATCGGTAGAAGCGCAT 59.967 55.000 11.47 0.00 39.21 4.73
536 578 2.447582 AGGAGCCTGGGATGGAATAT 57.552 50.000 0.00 0.00 0.00 1.28
546 588 3.278157 GGCGAAAAAGGAGCCTGG 58.722 61.111 0.00 0.00 46.83 4.45
549 591 3.040414 GAGCGGCGAAAAAGGAGCC 62.040 63.158 12.98 0.00 46.88 4.70
660 715 4.698304 TCCCATGATGTAAGACGGTTTTTC 59.302 41.667 0.00 0.00 0.00 2.29
661 716 4.457949 GTCCCATGATGTAAGACGGTTTTT 59.542 41.667 0.00 0.00 0.00 1.94
662 717 4.007659 GTCCCATGATGTAAGACGGTTTT 58.992 43.478 0.00 0.00 0.00 2.43
663 718 3.606687 GTCCCATGATGTAAGACGGTTT 58.393 45.455 0.00 0.00 0.00 3.27
664 719 2.418197 CGTCCCATGATGTAAGACGGTT 60.418 50.000 16.98 0.00 44.86 4.44
665 720 1.136305 CGTCCCATGATGTAAGACGGT 59.864 52.381 16.98 0.00 44.86 4.83
666 721 1.852942 CGTCCCATGATGTAAGACGG 58.147 55.000 16.98 0.55 44.86 4.79
668 723 2.224066 CCTCCGTCCCATGATGTAAGAC 60.224 54.545 0.00 0.00 0.00 3.01
669 724 2.039418 CCTCCGTCCCATGATGTAAGA 58.961 52.381 0.00 0.00 0.00 2.10
670 725 2.039418 TCCTCCGTCCCATGATGTAAG 58.961 52.381 0.00 0.00 0.00 2.34
671 726 2.168458 TCCTCCGTCCCATGATGTAA 57.832 50.000 0.00 0.00 0.00 2.41
672 727 2.039418 CTTCCTCCGTCCCATGATGTA 58.961 52.381 0.00 0.00 0.00 2.29
673 728 0.833287 CTTCCTCCGTCCCATGATGT 59.167 55.000 0.00 0.00 0.00 3.06
674 729 0.833287 ACTTCCTCCGTCCCATGATG 59.167 55.000 0.00 0.00 0.00 3.07
675 730 2.040178 GTACTTCCTCCGTCCCATGAT 58.960 52.381 0.00 0.00 0.00 2.45
676 731 1.272816 TGTACTTCCTCCGTCCCATGA 60.273 52.381 0.00 0.00 0.00 3.07
677 732 1.134788 GTGTACTTCCTCCGTCCCATG 60.135 57.143 0.00 0.00 0.00 3.66
678 733 1.192428 GTGTACTTCCTCCGTCCCAT 58.808 55.000 0.00 0.00 0.00 4.00
679 734 1.246056 CGTGTACTTCCTCCGTCCCA 61.246 60.000 0.00 0.00 0.00 4.37
680 735 0.962356 TCGTGTACTTCCTCCGTCCC 60.962 60.000 0.00 0.00 0.00 4.46
681 736 1.101331 ATCGTGTACTTCCTCCGTCC 58.899 55.000 0.00 0.00 0.00 4.79
682 737 4.361451 TTTATCGTGTACTTCCTCCGTC 57.639 45.455 0.00 0.00 0.00 4.79
683 738 4.488879 GTTTTATCGTGTACTTCCTCCGT 58.511 43.478 0.00 0.00 0.00 4.69
684 739 3.861689 GGTTTTATCGTGTACTTCCTCCG 59.138 47.826 0.00 0.00 0.00 4.63
685 740 4.186926 GGGTTTTATCGTGTACTTCCTCC 58.813 47.826 0.00 0.00 0.00 4.30
686 741 4.628766 GTGGGTTTTATCGTGTACTTCCTC 59.371 45.833 0.00 0.00 0.00 3.71
687 742 4.572909 GTGGGTTTTATCGTGTACTTCCT 58.427 43.478 0.00 0.00 0.00 3.36
688 743 3.368843 CGTGGGTTTTATCGTGTACTTCC 59.631 47.826 0.00 0.00 0.00 3.46
689 744 3.368843 CCGTGGGTTTTATCGTGTACTTC 59.631 47.826 0.00 0.00 0.00 3.01
690 745 3.328505 CCGTGGGTTTTATCGTGTACTT 58.671 45.455 0.00 0.00 0.00 2.24
691 746 2.354003 CCCGTGGGTTTTATCGTGTACT 60.354 50.000 0.00 0.00 0.00 2.73
692 747 2.001872 CCCGTGGGTTTTATCGTGTAC 58.998 52.381 0.00 0.00 0.00 2.90
693 748 1.898472 TCCCGTGGGTTTTATCGTGTA 59.102 47.619 4.53 0.00 36.47 2.90
694 749 0.686224 TCCCGTGGGTTTTATCGTGT 59.314 50.000 4.53 0.00 36.47 4.49
695 750 1.081094 GTCCCGTGGGTTTTATCGTG 58.919 55.000 4.53 0.00 36.47 4.35
696 751 0.036105 GGTCCCGTGGGTTTTATCGT 60.036 55.000 4.53 0.00 36.47 3.73
697 752 1.085501 CGGTCCCGTGGGTTTTATCG 61.086 60.000 4.53 0.00 36.47 2.92
698 753 2.771435 CGGTCCCGTGGGTTTTATC 58.229 57.895 4.53 0.00 36.47 1.75
709 764 2.175035 ATTGGTGGTGTACGGTCCCG 62.175 60.000 3.76 3.76 46.03 5.14
710 765 0.903942 TATTGGTGGTGTACGGTCCC 59.096 55.000 0.00 0.00 0.00 4.46
711 766 1.551883 ACTATTGGTGGTGTACGGTCC 59.448 52.381 0.00 0.00 0.00 4.46
712 767 3.256558 GAACTATTGGTGGTGTACGGTC 58.743 50.000 0.00 0.00 0.00 4.79
713 768 2.633967 TGAACTATTGGTGGTGTACGGT 59.366 45.455 0.00 0.00 0.00 4.83
714 769 2.997986 GTGAACTATTGGTGGTGTACGG 59.002 50.000 0.00 0.00 0.00 4.02
715 770 3.655486 TGTGAACTATTGGTGGTGTACG 58.345 45.455 0.00 0.00 0.00 3.67
716 771 5.488341 AGATGTGAACTATTGGTGGTGTAC 58.512 41.667 0.00 0.00 0.00 2.90
717 772 5.755409 AGATGTGAACTATTGGTGGTGTA 57.245 39.130 0.00 0.00 0.00 2.90
718 773 4.640771 AGATGTGAACTATTGGTGGTGT 57.359 40.909 0.00 0.00 0.00 4.16
719 774 6.402118 CGTTTAGATGTGAACTATTGGTGGTG 60.402 42.308 0.00 0.00 0.00 4.17
720 775 5.642063 CGTTTAGATGTGAACTATTGGTGGT 59.358 40.000 0.00 0.00 0.00 4.16
721 776 5.447279 GCGTTTAGATGTGAACTATTGGTGG 60.447 44.000 0.00 0.00 0.00 4.61
722 777 5.560148 GCGTTTAGATGTGAACTATTGGTG 58.440 41.667 0.00 0.00 0.00 4.17
723 778 4.328983 CGCGTTTAGATGTGAACTATTGGT 59.671 41.667 0.00 0.00 0.00 3.67
724 779 4.565166 TCGCGTTTAGATGTGAACTATTGG 59.435 41.667 5.77 0.00 0.00 3.16
725 780 5.696260 TCGCGTTTAGATGTGAACTATTG 57.304 39.130 5.77 0.00 0.00 1.90
726 781 8.589335 AATATCGCGTTTAGATGTGAACTATT 57.411 30.769 5.77 0.00 35.13 1.73
727 782 8.082852 AGAATATCGCGTTTAGATGTGAACTAT 58.917 33.333 5.77 0.00 35.13 2.12
728 783 7.423199 AGAATATCGCGTTTAGATGTGAACTA 58.577 34.615 5.77 0.00 35.13 2.24
729 784 6.273825 AGAATATCGCGTTTAGATGTGAACT 58.726 36.000 5.77 0.00 35.13 3.01
730 785 6.512177 AGAATATCGCGTTTAGATGTGAAC 57.488 37.500 5.77 0.00 35.13 3.18
731 786 6.978659 AGAAGAATATCGCGTTTAGATGTGAA 59.021 34.615 5.77 0.00 35.13 3.18
732 787 6.417930 CAGAAGAATATCGCGTTTAGATGTGA 59.582 38.462 5.77 0.00 35.88 3.58
733 788 6.417930 TCAGAAGAATATCGCGTTTAGATGTG 59.582 38.462 5.77 0.00 0.00 3.21
734 789 6.504398 TCAGAAGAATATCGCGTTTAGATGT 58.496 36.000 5.77 0.00 0.00 3.06
735 790 6.993175 TCAGAAGAATATCGCGTTTAGATG 57.007 37.500 5.77 0.00 0.00 2.90
736 791 8.594881 AATTCAGAAGAATATCGCGTTTAGAT 57.405 30.769 5.77 0.00 43.52 1.98
737 792 9.692749 ATAATTCAGAAGAATATCGCGTTTAGA 57.307 29.630 5.77 0.00 43.52 2.10
740 795 9.651718 GAAATAATTCAGAAGAATATCGCGTTT 57.348 29.630 5.77 0.00 43.52 3.60
741 796 8.004344 CGAAATAATTCAGAAGAATATCGCGTT 58.996 33.333 5.77 0.00 43.52 4.84
742 797 7.381408 TCGAAATAATTCAGAAGAATATCGCGT 59.619 33.333 5.77 0.00 43.52 6.01
743 798 7.680439 GTCGAAATAATTCAGAAGAATATCGCG 59.320 37.037 0.00 0.00 43.52 5.87
744 799 8.487970 TGTCGAAATAATTCAGAAGAATATCGC 58.512 33.333 0.00 3.50 43.52 4.58
745 800 9.784824 GTGTCGAAATAATTCAGAAGAATATCG 57.215 33.333 0.00 0.00 43.52 2.92
747 802 9.057089 GGGTGTCGAAATAATTCAGAAGAATAT 57.943 33.333 0.00 0.00 43.52 1.28
748 803 8.044309 TGGGTGTCGAAATAATTCAGAAGAATA 58.956 33.333 0.00 0.00 43.52 1.75
749 804 6.884295 TGGGTGTCGAAATAATTCAGAAGAAT 59.116 34.615 0.00 0.00 46.20 2.40
750 805 6.234920 TGGGTGTCGAAATAATTCAGAAGAA 58.765 36.000 0.00 0.00 38.31 2.52
751 806 5.800296 TGGGTGTCGAAATAATTCAGAAGA 58.200 37.500 0.00 0.00 35.15 2.87
752 807 6.072728 TGTTGGGTGTCGAAATAATTCAGAAG 60.073 38.462 0.00 0.00 35.15 2.85
753 808 5.765677 TGTTGGGTGTCGAAATAATTCAGAA 59.234 36.000 0.00 0.00 35.15 3.02
754 809 5.309638 TGTTGGGTGTCGAAATAATTCAGA 58.690 37.500 0.00 0.00 35.15 3.27
755 810 5.621197 TGTTGGGTGTCGAAATAATTCAG 57.379 39.130 0.00 0.00 35.15 3.02
756 811 5.533154 ACTTGTTGGGTGTCGAAATAATTCA 59.467 36.000 0.00 0.00 35.15 2.57
757 812 6.009115 ACTTGTTGGGTGTCGAAATAATTC 57.991 37.500 0.00 0.00 0.00 2.17
758 813 7.513371 TTACTTGTTGGGTGTCGAAATAATT 57.487 32.000 0.00 0.00 0.00 1.40
759 814 7.148137 GGATTACTTGTTGGGTGTCGAAATAAT 60.148 37.037 0.00 0.00 0.00 1.28
760 815 6.149807 GGATTACTTGTTGGGTGTCGAAATAA 59.850 38.462 0.00 0.00 0.00 1.40
761 816 5.644636 GGATTACTTGTTGGGTGTCGAAATA 59.355 40.000 0.00 0.00 0.00 1.40
762 817 4.457949 GGATTACTTGTTGGGTGTCGAAAT 59.542 41.667 0.00 0.00 0.00 2.17
763 818 3.816523 GGATTACTTGTTGGGTGTCGAAA 59.183 43.478 0.00 0.00 0.00 3.46
764 819 3.404899 GGATTACTTGTTGGGTGTCGAA 58.595 45.455 0.00 0.00 0.00 3.71
765 820 2.289819 GGGATTACTTGTTGGGTGTCGA 60.290 50.000 0.00 0.00 0.00 4.20
766 821 2.081462 GGGATTACTTGTTGGGTGTCG 58.919 52.381 0.00 0.00 0.00 4.35
767 822 2.041216 AGGGGATTACTTGTTGGGTGTC 59.959 50.000 0.00 0.00 0.00 3.67
768 823 2.041216 GAGGGGATTACTTGTTGGGTGT 59.959 50.000 0.00 0.00 0.00 4.16
769 824 2.308866 AGAGGGGATTACTTGTTGGGTG 59.691 50.000 0.00 0.00 0.00 4.61
770 825 2.576648 GAGAGGGGATTACTTGTTGGGT 59.423 50.000 0.00 0.00 0.00 4.51
771 826 2.420129 CGAGAGGGGATTACTTGTTGGG 60.420 54.545 0.00 0.00 0.00 4.12
772 827 2.500098 TCGAGAGGGGATTACTTGTTGG 59.500 50.000 0.00 0.00 0.00 3.77
773 828 3.447586 TCTCGAGAGGGGATTACTTGTTG 59.552 47.826 12.08 0.00 0.00 3.33
774 829 3.702045 CTCTCGAGAGGGGATTACTTGTT 59.298 47.826 31.01 0.00 38.48 2.83
775 830 3.292460 CTCTCGAGAGGGGATTACTTGT 58.708 50.000 31.01 0.00 38.48 3.16
776 831 2.035321 GCTCTCGAGAGGGGATTACTTG 59.965 54.545 36.65 13.90 42.29 3.16
777 832 2.091555 AGCTCTCGAGAGGGGATTACTT 60.092 50.000 36.65 10.93 42.29 2.24
778 833 1.497286 AGCTCTCGAGAGGGGATTACT 59.503 52.381 36.65 23.12 42.29 2.24
779 834 1.883926 GAGCTCTCGAGAGGGGATTAC 59.116 57.143 36.65 21.47 42.29 1.89
780 835 1.495148 TGAGCTCTCGAGAGGGGATTA 59.505 52.381 36.65 11.22 42.29 1.75
781 836 0.260230 TGAGCTCTCGAGAGGGGATT 59.740 55.000 36.65 10.24 42.29 3.01
782 837 0.467290 GTGAGCTCTCGAGAGGGGAT 60.467 60.000 36.65 16.83 42.29 3.85
783 838 1.077357 GTGAGCTCTCGAGAGGGGA 60.077 63.158 36.65 7.83 42.29 4.81
784 839 2.477176 CGTGAGCTCTCGAGAGGGG 61.477 68.421 36.65 18.52 42.29 4.79
785 840 2.477176 CCGTGAGCTCTCGAGAGGG 61.477 68.421 36.65 26.60 42.29 4.30
786 841 3.106552 CCGTGAGCTCTCGAGAGG 58.893 66.667 36.65 22.51 42.29 3.69
787 842 2.407210 GCCGTGAGCTCTCGAGAG 59.593 66.667 33.54 33.54 44.75 3.20
788 843 3.500642 CGCCGTGAGCTCTCGAGA 61.501 66.667 33.18 15.70 40.39 4.04
789 844 3.726631 GACGCCGTGAGCTCTCGAG 62.727 68.421 33.18 27.18 40.39 4.04
790 845 3.800863 GACGCCGTGAGCTCTCGA 61.801 66.667 33.18 3.78 40.39 4.04
792 847 2.797866 TTTCGACGCCGTGAGCTCTC 62.798 60.000 16.19 10.75 40.39 3.20
793 848 2.804368 CTTTCGACGCCGTGAGCTCT 62.804 60.000 16.19 0.00 40.39 4.09
794 849 2.430244 TTTCGACGCCGTGAGCTC 60.430 61.111 6.82 6.82 40.39 4.09
795 850 2.430921 CTTTCGACGCCGTGAGCT 60.431 61.111 0.00 0.00 40.39 4.09
796 851 2.430244 TCTTTCGACGCCGTGAGC 60.430 61.111 0.00 0.00 37.05 4.26
797 852 2.437343 GCTCTTTCGACGCCGTGAG 61.437 63.158 0.00 0.00 37.05 3.51
798 853 2.430244 GCTCTTTCGACGCCGTGA 60.430 61.111 0.00 0.00 37.05 4.35
799 854 3.827784 CGCTCTTTCGACGCCGTG 61.828 66.667 0.00 0.00 37.05 4.94
800 855 4.338539 ACGCTCTTTCGACGCCGT 62.339 61.111 0.00 0.00 37.05 5.68
801 856 3.827784 CACGCTCTTTCGACGCCG 61.828 66.667 0.00 0.00 37.07 6.46
802 857 2.733593 ACACGCTCTTTCGACGCC 60.734 61.111 0.00 0.00 0.00 5.68
803 858 2.300787 ACACACGCTCTTTCGACGC 61.301 57.895 0.00 0.00 0.00 5.19
804 859 1.482955 CACACACGCTCTTTCGACG 59.517 57.895 0.00 0.00 0.00 5.12
805 860 1.201825 GCACACACGCTCTTTCGAC 59.798 57.895 0.00 0.00 0.00 4.20
806 861 2.300066 CGCACACACGCTCTTTCGA 61.300 57.895 0.00 0.00 0.00 3.71
807 862 2.168621 CGCACACACGCTCTTTCG 59.831 61.111 0.00 0.00 0.00 3.46
815 870 3.043713 ACCTCATGCGCACACACG 61.044 61.111 14.90 1.36 0.00 4.49
816 871 1.506309 TTCACCTCATGCGCACACAC 61.506 55.000 14.90 0.00 0.00 3.82
817 872 0.817229 TTTCACCTCATGCGCACACA 60.817 50.000 14.90 0.00 0.00 3.72
818 873 0.310543 TTTTCACCTCATGCGCACAC 59.689 50.000 14.90 0.00 0.00 3.82
819 874 0.592637 CTTTTCACCTCATGCGCACA 59.407 50.000 14.90 0.11 0.00 4.57
820 875 0.109597 CCTTTTCACCTCATGCGCAC 60.110 55.000 14.90 0.00 0.00 5.34
821 876 1.243342 CCCTTTTCACCTCATGCGCA 61.243 55.000 14.96 14.96 0.00 6.09
822 877 1.244019 ACCCTTTTCACCTCATGCGC 61.244 55.000 0.00 0.00 0.00 6.09
823 878 0.804989 GACCCTTTTCACCTCATGCG 59.195 55.000 0.00 0.00 0.00 4.73
824 879 1.909700 TGACCCTTTTCACCTCATGC 58.090 50.000 0.00 0.00 0.00 4.06
825 880 2.558359 GGTTGACCCTTTTCACCTCATG 59.442 50.000 0.00 0.00 0.00 3.07
826 881 2.876581 GGTTGACCCTTTTCACCTCAT 58.123 47.619 0.00 0.00 0.00 2.90
827 882 2.358322 GGTTGACCCTTTTCACCTCA 57.642 50.000 0.00 0.00 0.00 3.86
839 894 0.885879 GAAATCGGTTGGGGTTGACC 59.114 55.000 0.00 0.00 39.11 4.02
840 895 0.885879 GGAAATCGGTTGGGGTTGAC 59.114 55.000 0.00 0.00 0.00 3.18
841 896 0.251430 GGGAAATCGGTTGGGGTTGA 60.251 55.000 0.00 0.00 0.00 3.18
842 897 1.254975 GGGGAAATCGGTTGGGGTTG 61.255 60.000 0.00 0.00 0.00 3.77
846 901 3.138128 GCGGGGAAATCGGTTGGG 61.138 66.667 0.00 0.00 0.00 4.12
854 909 1.007118 AGAGGAAAATGGCGGGGAAAT 59.993 47.619 0.00 0.00 0.00 2.17
878 933 1.745489 GGCGTGGAATGGACAGGAC 60.745 63.158 0.00 0.00 0.00 3.85
901 956 3.551407 GTCGGCCCCTCATCCTCC 61.551 72.222 0.00 0.00 0.00 4.30
934 993 1.090052 GCACGTTAGGATCTGGTGGC 61.090 60.000 0.00 0.00 0.00 5.01
946 1005 2.287373 CGTGGTTAGTTTTGGCACGTTA 59.713 45.455 0.00 0.00 0.00 3.18
952 1011 2.412325 CGTGATCGTGGTTAGTTTTGGC 60.412 50.000 0.00 0.00 0.00 4.52
960 1019 2.182284 CCGGCGTGATCGTGGTTA 59.818 61.111 6.01 0.00 39.49 2.85
978 1037 1.291877 CGGTGTTCTCCTTGCTTCGG 61.292 60.000 0.00 0.00 0.00 4.30
979 1038 1.291877 CCGGTGTTCTCCTTGCTTCG 61.292 60.000 0.00 0.00 0.00 3.79
980 1039 1.578206 GCCGGTGTTCTCCTTGCTTC 61.578 60.000 1.90 0.00 0.00 3.86
984 1043 1.308069 CCATGCCGGTGTTCTCCTTG 61.308 60.000 1.90 0.00 0.00 3.61
987 1046 3.134127 GCCATGCCGGTGTTCTCC 61.134 66.667 1.90 0.00 36.97 3.71
988 1047 2.045926 AGCCATGCCGGTGTTCTC 60.046 61.111 1.90 0.00 36.97 2.87
989 1048 2.045926 GAGCCATGCCGGTGTTCT 60.046 61.111 1.90 0.00 36.97 3.01
990 1049 3.134127 GGAGCCATGCCGGTGTTC 61.134 66.667 1.90 0.00 36.97 3.18
1082 1142 4.760047 CCAGGTCAACGGCGGAGG 62.760 72.222 13.24 0.00 0.00 4.30
1092 1152 2.425592 CAGTTCACGCCCAGGTCA 59.574 61.111 0.00 0.00 0.00 4.02
1098 1158 2.124695 GATCCCCAGTTCACGCCC 60.125 66.667 0.00 0.00 0.00 6.13
1141 1201 0.908198 AGCATCTTCACCACCTCCTC 59.092 55.000 0.00 0.00 0.00 3.71
1142 1202 0.908198 GAGCATCTTCACCACCTCCT 59.092 55.000 0.00 0.00 0.00 3.69
1143 1203 0.615331 TGAGCATCTTCACCACCTCC 59.385 55.000 0.00 0.00 34.92 4.30
1224 1284 3.209812 TCGATGCCGGAGTCGAGG 61.210 66.667 22.54 0.00 41.44 4.63
1886 1981 3.056328 GGGTGCCCTCGTTCTTGC 61.056 66.667 0.00 0.00 0.00 4.01
1921 2019 0.733729 CCGAAGAGGTAGACGTCCAG 59.266 60.000 13.01 0.00 34.51 3.86
2130 2229 1.348064 TGTCCATGTCCTCGTCCTTT 58.652 50.000 0.00 0.00 0.00 3.11
2337 2439 2.752358 CAGCTCTTGGTGGAGGCA 59.248 61.111 0.00 0.00 37.97 4.75
2442 2550 2.167398 AACCCGTCGTCATCACCAGG 62.167 60.000 0.00 0.00 0.00 4.45
2445 2553 2.083167 TAAAACCCGTCGTCATCACC 57.917 50.000 0.00 0.00 0.00 4.02
2483 2593 0.250989 ACCGCCCTCTAGCTAGCTAG 60.251 60.000 36.20 36.20 45.38 3.42
2484 2594 0.250814 GACCGCCCTCTAGCTAGCTA 60.251 60.000 22.85 22.85 0.00 3.32
2485 2595 1.529713 GACCGCCCTCTAGCTAGCT 60.530 63.158 23.12 23.12 0.00 3.32
2486 2596 1.392710 TTGACCGCCCTCTAGCTAGC 61.393 60.000 16.35 6.62 0.00 3.42
2487 2597 1.112113 TTTGACCGCCCTCTAGCTAG 58.888 55.000 15.01 15.01 0.00 3.42
2488 2598 0.822164 GTTTGACCGCCCTCTAGCTA 59.178 55.000 0.00 0.00 0.00 3.32
2489 2599 1.192146 TGTTTGACCGCCCTCTAGCT 61.192 55.000 0.00 0.00 0.00 3.32
2490 2600 0.107654 ATGTTTGACCGCCCTCTAGC 60.108 55.000 0.00 0.00 0.00 3.42
2491 2601 1.802880 CGATGTTTGACCGCCCTCTAG 60.803 57.143 0.00 0.00 0.00 2.43
2492 2602 0.174845 CGATGTTTGACCGCCCTCTA 59.825 55.000 0.00 0.00 0.00 2.43
2493 2603 1.079127 CGATGTTTGACCGCCCTCT 60.079 57.895 0.00 0.00 0.00 3.69
2494 2604 2.106683 CCGATGTTTGACCGCCCTC 61.107 63.158 0.00 0.00 0.00 4.30
2495 2605 2.046314 CCGATGTTTGACCGCCCT 60.046 61.111 0.00 0.00 0.00 5.19
2496 2606 2.046700 TCCGATGTTTGACCGCCC 60.047 61.111 0.00 0.00 0.00 6.13
2497 2607 2.750888 GCTCCGATGTTTGACCGCC 61.751 63.158 0.00 0.00 0.00 6.13
2498 2608 2.785258 GCTCCGATGTTTGACCGC 59.215 61.111 0.00 0.00 0.00 5.68
2499 2609 2.452813 CCGCTCCGATGTTTGACCG 61.453 63.158 0.00 0.00 0.00 4.79
2500 2610 1.079405 TCCGCTCCGATGTTTGACC 60.079 57.895 0.00 0.00 0.00 4.02
2501 2611 1.696832 GCTCCGCTCCGATGTTTGAC 61.697 60.000 0.00 0.00 0.00 3.18
2502 2612 1.447838 GCTCCGCTCCGATGTTTGA 60.448 57.895 0.00 0.00 0.00 2.69
2503 2613 2.802667 CGCTCCGCTCCGATGTTTG 61.803 63.158 0.00 0.00 0.00 2.93
2504 2614 2.509336 CGCTCCGCTCCGATGTTT 60.509 61.111 0.00 0.00 0.00 2.83
2505 2615 4.514577 CCGCTCCGCTCCGATGTT 62.515 66.667 0.00 0.00 0.00 2.71
2517 2627 3.682292 ATTCGTTGCTCCCCCGCTC 62.682 63.158 0.00 0.00 0.00 5.03
2518 2628 3.682292 GATTCGTTGCTCCCCCGCT 62.682 63.158 0.00 0.00 0.00 5.52
2519 2629 3.202706 GATTCGTTGCTCCCCCGC 61.203 66.667 0.00 0.00 0.00 6.13
2520 2630 2.513897 GGATTCGTTGCTCCCCCG 60.514 66.667 0.00 0.00 0.00 5.73
2521 2631 2.325393 ATCGGATTCGTTGCTCCCCC 62.325 60.000 0.00 0.00 37.69 5.40
2522 2632 0.880718 GATCGGATTCGTTGCTCCCC 60.881 60.000 0.00 0.00 37.69 4.81
2523 2633 0.179084 TGATCGGATTCGTTGCTCCC 60.179 55.000 0.00 0.00 37.69 4.30
2524 2634 1.871080 ATGATCGGATTCGTTGCTCC 58.129 50.000 0.00 0.00 37.69 4.70
2525 2635 2.866156 TGAATGATCGGATTCGTTGCTC 59.134 45.455 0.00 0.00 35.43 4.26
2526 2636 2.905075 TGAATGATCGGATTCGTTGCT 58.095 42.857 0.00 0.00 35.43 3.91
2527 2637 3.885484 ATGAATGATCGGATTCGTTGC 57.115 42.857 0.00 0.00 35.43 4.17
2528 2638 5.052172 GCAAAATGAATGATCGGATTCGTTG 60.052 40.000 11.84 10.68 39.57 4.10
2529 2639 5.036737 GCAAAATGAATGATCGGATTCGTT 58.963 37.500 7.19 7.19 41.36 3.85
2530 2640 4.336433 AGCAAAATGAATGATCGGATTCGT 59.664 37.500 0.00 0.00 35.43 3.85
2531 2641 4.852138 AGCAAAATGAATGATCGGATTCG 58.148 39.130 0.00 0.00 35.43 3.34
2532 2642 6.197842 GTCAAGCAAAATGAATGATCGGATTC 59.802 38.462 0.00 0.00 33.59 2.52
2533 2643 6.038356 GTCAAGCAAAATGAATGATCGGATT 58.962 36.000 0.00 0.00 0.00 3.01
2534 2644 5.359009 AGTCAAGCAAAATGAATGATCGGAT 59.641 36.000 0.00 0.00 0.00 4.18
2535 2645 4.701651 AGTCAAGCAAAATGAATGATCGGA 59.298 37.500 0.00 0.00 0.00 4.55
2536 2646 4.990257 AGTCAAGCAAAATGAATGATCGG 58.010 39.130 0.00 0.00 0.00 4.18
2537 2647 5.674148 CGTAGTCAAGCAAAATGAATGATCG 59.326 40.000 0.00 0.00 0.00 3.69
2538 2648 6.546395 ACGTAGTCAAGCAAAATGAATGATC 58.454 36.000 0.00 0.00 29.74 2.92
2539 2649 6.500684 ACGTAGTCAAGCAAAATGAATGAT 57.499 33.333 0.00 0.00 29.74 2.45
2540 2650 5.940192 ACGTAGTCAAGCAAAATGAATGA 57.060 34.783 0.00 0.00 29.74 2.57
2541 2651 6.738200 CAGTACGTAGTCAAGCAAAATGAATG 59.262 38.462 0.00 0.00 43.93 2.67
2542 2652 6.426937 ACAGTACGTAGTCAAGCAAAATGAAT 59.573 34.615 0.00 0.00 43.93 2.57
2543 2653 5.756347 ACAGTACGTAGTCAAGCAAAATGAA 59.244 36.000 0.00 0.00 43.93 2.57
2544 2654 5.294356 ACAGTACGTAGTCAAGCAAAATGA 58.706 37.500 0.00 0.00 43.93 2.57
2545 2655 5.176774 TGACAGTACGTAGTCAAGCAAAATG 59.823 40.000 13.52 0.00 43.93 2.32
2546 2656 5.294356 TGACAGTACGTAGTCAAGCAAAAT 58.706 37.500 13.52 0.00 43.93 1.82
2547 2657 4.684877 TGACAGTACGTAGTCAAGCAAAA 58.315 39.130 13.52 0.00 43.93 2.44
2548 2658 4.310357 TGACAGTACGTAGTCAAGCAAA 57.690 40.909 13.52 0.00 43.93 3.68
2549 2659 3.994204 TGACAGTACGTAGTCAAGCAA 57.006 42.857 13.52 0.00 43.93 3.91
2550 2660 3.425758 CGATGACAGTACGTAGTCAAGCA 60.426 47.826 18.20 7.38 46.62 3.91
2551 2661 3.099362 CGATGACAGTACGTAGTCAAGC 58.901 50.000 18.20 13.25 46.62 4.01
2552 2662 4.595198 TCGATGACAGTACGTAGTCAAG 57.405 45.455 18.20 15.31 46.62 3.02
2553 2663 4.632688 TGATCGATGACAGTACGTAGTCAA 59.367 41.667 18.20 6.15 46.62 3.18
2555 2665 4.270566 AGTGATCGATGACAGTACGTAGTC 59.729 45.833 17.43 3.99 43.93 2.59
2557 2667 4.797693 AGTGATCGATGACAGTACGTAG 57.202 45.455 17.43 0.00 0.00 3.51
2558 2668 5.556355 AAAGTGATCGATGACAGTACGTA 57.444 39.130 17.43 0.00 0.00 3.57
2559 2669 4.436242 AAAGTGATCGATGACAGTACGT 57.564 40.909 17.43 0.00 0.00 3.57
2560 2670 5.573282 AGAAAAAGTGATCGATGACAGTACG 59.427 40.000 17.43 0.00 0.00 3.67
2561 2671 6.952935 AGAAAAAGTGATCGATGACAGTAC 57.047 37.500 17.43 4.77 0.00 2.73
2563 2673 9.307121 CTATAAGAAAAAGTGATCGATGACAGT 57.693 33.333 17.43 3.25 0.00 3.55
2564 2674 9.521503 TCTATAAGAAAAAGTGATCGATGACAG 57.478 33.333 17.43 1.97 0.00 3.51
2565 2675 9.869757 TTCTATAAGAAAAAGTGATCGATGACA 57.130 29.630 17.43 0.00 29.99 3.58
2607 2717 2.794910 CCTAGACGCGTCCATGTTTATG 59.205 50.000 34.08 12.83 0.00 1.90
2608 2718 2.223971 CCCTAGACGCGTCCATGTTTAT 60.224 50.000 34.08 16.48 0.00 1.40
2609 2719 1.135527 CCCTAGACGCGTCCATGTTTA 59.864 52.381 34.08 18.13 0.00 2.01
2610 2720 0.108329 CCCTAGACGCGTCCATGTTT 60.108 55.000 34.08 17.97 0.00 2.83
2611 2721 0.968901 TCCCTAGACGCGTCCATGTT 60.969 55.000 34.08 18.72 0.00 2.71
2612 2722 1.379443 TCCCTAGACGCGTCCATGT 60.379 57.895 34.08 19.11 0.00 3.21
2613 2723 1.360551 CTCCCTAGACGCGTCCATG 59.639 63.158 34.08 23.01 0.00 3.66
2705 2817 1.278127 GGAACGTCCCCTTTCTGATCA 59.722 52.381 0.00 0.00 0.00 2.92
2856 2969 3.576078 TGAACCTTGCCTCTTTCTTGA 57.424 42.857 0.00 0.00 0.00 3.02
3102 3216 9.703892 CAATAATCAACACAGGGTTAAAAATCA 57.296 29.630 0.00 0.00 37.72 2.57
3334 3483 6.818644 CACAGTATTACTTGCCTAGTGTTCAT 59.181 38.462 0.00 0.00 37.73 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.