Multiple sequence alignment - TraesCS6B01G438700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G438700 chr6B 100.000 2756 0 0 1 2756 704750310 704753065 0.000000e+00 5090
1 TraesCS6B01G438700 chr6B 93.978 465 13 6 1 450 449455079 449454615 0.000000e+00 689
2 TraesCS6B01G438700 chr6D 87.508 1665 97 49 456 2066 462273615 462272008 0.000000e+00 1820
3 TraesCS6B01G438700 chr6D 81.789 615 78 23 2156 2756 462271897 462271303 4.130000e-133 484
4 TraesCS6B01G438700 chr6A 87.458 1475 94 41 698 2145 609107880 609106470 0.000000e+00 1615
5 TraesCS6B01G438700 chr6A 90.113 617 31 7 2148 2756 609106415 609105821 0.000000e+00 774
6 TraesCS6B01G438700 chr6A 95.043 464 8 2 1 449 223572183 223571720 0.000000e+00 715
7 TraesCS6B01G438700 chr6A 80.315 254 20 12 452 701 609108229 609108002 6.110000e-37 165
8 TraesCS6B01G438700 chr2A 98.218 449 8 0 1 449 2760977 2760529 0.000000e+00 785
9 TraesCS6B01G438700 chr2A 95.474 464 6 1 1 449 734927980 734927517 0.000000e+00 726
10 TraesCS6B01G438700 chr7A 97.773 449 10 0 1 449 707677564 707678012 0.000000e+00 774
11 TraesCS6B01G438700 chr3B 95.096 469 8 1 1 454 60277929 60278397 0.000000e+00 725
12 TraesCS6B01G438700 chrUn 95.259 464 7 1 1 449 8801701 8801238 0.000000e+00 721
13 TraesCS6B01G438700 chr7B 95.259 464 7 1 1 449 714445865 714445402 0.000000e+00 721
14 TraesCS6B01G438700 chr5A 95.344 451 19 2 1 449 547400754 547401204 0.000000e+00 715
15 TraesCS6B01G438700 chr4B 95.043 464 8 1 1 449 621755558 621755095 0.000000e+00 715
16 TraesCS6B01G438700 chr4B 94.828 464 9 3 1 449 661145356 661144893 0.000000e+00 710
17 TraesCS6B01G438700 chr4B 86.765 272 34 2 1051 1321 605693090 605692820 4.460000e-78 302
18 TraesCS6B01G438700 chr4B 84.559 272 40 2 1050 1320 605682900 605683170 4.520000e-68 268
19 TraesCS6B01G438700 chr4B 76.515 264 49 12 1055 1313 77651297 77651552 6.190000e-27 132
20 TraesCS6B01G438700 chr1B 94.397 464 11 1 1 449 141725589 141725126 0.000000e+00 699
21 TraesCS6B01G438700 chr1B 84.737 190 15 5 2545 2733 654917092 654916916 7.840000e-41 178
22 TraesCS6B01G438700 chr4D 86.029 272 36 2 1050 1320 478992314 478992584 9.660000e-75 291
23 TraesCS6B01G438700 chr4D 83.392 283 42 5 1040 1320 382737997 382738276 9.790000e-65 257
24 TraesCS6B01G438700 chr4A 84.871 271 41 0 1050 1320 685372137 685372407 9.720000e-70 274
25 TraesCS6B01G438700 chr4A 83.746 283 41 5 1040 1320 64956707 64956986 2.100000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G438700 chr6B 704750310 704753065 2755 False 5090.000000 5090 100.0000 1 2756 1 chr6B.!!$F1 2755
1 TraesCS6B01G438700 chr6D 462271303 462273615 2312 True 1152.000000 1820 84.6485 456 2756 2 chr6D.!!$R1 2300
2 TraesCS6B01G438700 chr6A 609105821 609108229 2408 True 851.333333 1615 85.9620 452 2756 3 chr6A.!!$R2 2304

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.040958 CAGCAGCGTCCAAACTTGTC 60.041 55.0 0.0 0.0 0.0 3.18 F
312 313 0.103208 AGATTCAGGGTTAGCGCGAG 59.897 55.0 12.1 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1355 1533 0.034380 AAGACGAGGGAGTGATCGGA 60.034 55.000 0.0 0.0 43.12 4.55 R
1794 1993 1.069022 CGAGGTTGTTGGAAGCATGTG 60.069 52.381 0.0 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.669569 GAGGCAGCAGCGTCCAAA 60.670 61.111 12.27 0.00 46.96 3.28
43 44 2.970974 GAGGCAGCAGCGTCCAAAC 61.971 63.158 12.27 0.00 46.96 2.93
44 45 2.980233 GGCAGCAGCGTCCAAACT 60.980 61.111 0.00 0.00 43.41 2.66
45 46 2.555547 GGCAGCAGCGTCCAAACTT 61.556 57.895 0.00 0.00 43.41 2.66
46 47 1.370900 GCAGCAGCGTCCAAACTTG 60.371 57.895 0.00 0.00 0.00 3.16
47 48 2.024918 CAGCAGCGTCCAAACTTGT 58.975 52.632 0.00 0.00 0.00 3.16
48 49 0.040958 CAGCAGCGTCCAAACTTGTC 60.041 55.000 0.00 0.00 0.00 3.18
49 50 0.179045 AGCAGCGTCCAAACTTGTCT 60.179 50.000 0.00 0.00 0.00 3.41
50 51 0.235926 GCAGCGTCCAAACTTGTCTC 59.764 55.000 0.00 0.00 0.00 3.36
51 52 0.508641 CAGCGTCCAAACTTGTCTCG 59.491 55.000 0.00 0.00 0.00 4.04
52 53 1.204312 GCGTCCAAACTTGTCTCGC 59.796 57.895 0.00 0.00 34.63 5.03
53 54 1.860078 CGTCCAAACTTGTCTCGCC 59.140 57.895 0.00 0.00 0.00 5.54
54 55 1.860078 GTCCAAACTTGTCTCGCCG 59.140 57.895 0.00 0.00 0.00 6.46
55 56 1.959226 TCCAAACTTGTCTCGCCGC 60.959 57.895 0.00 0.00 0.00 6.53
56 57 2.556287 CAAACTTGTCTCGCCGCC 59.444 61.111 0.00 0.00 0.00 6.13
57 58 2.110213 AAACTTGTCTCGCCGCCA 59.890 55.556 0.00 0.00 0.00 5.69
58 59 1.961277 AAACTTGTCTCGCCGCCAG 60.961 57.895 0.00 0.00 0.00 4.85
97 98 2.890474 CGCCCTCCGGAATCAACG 60.890 66.667 5.23 1.27 0.00 4.10
98 99 2.582436 GCCCTCCGGAATCAACGA 59.418 61.111 5.23 0.00 0.00 3.85
99 100 1.521681 GCCCTCCGGAATCAACGAG 60.522 63.158 5.23 0.00 0.00 4.18
100 101 1.144057 CCCTCCGGAATCAACGAGG 59.856 63.158 5.23 0.00 0.00 4.63
101 102 1.327690 CCCTCCGGAATCAACGAGGA 61.328 60.000 5.23 0.00 33.47 3.71
102 103 0.179108 CCTCCGGAATCAACGAGGAC 60.179 60.000 5.23 0.00 33.47 3.85
103 104 0.530744 CTCCGGAATCAACGAGGACA 59.469 55.000 5.23 0.00 0.00 4.02
104 105 1.137086 CTCCGGAATCAACGAGGACAT 59.863 52.381 5.23 0.00 0.00 3.06
105 106 1.134818 TCCGGAATCAACGAGGACATG 60.135 52.381 0.00 0.00 0.00 3.21
106 107 1.290203 CGGAATCAACGAGGACATGG 58.710 55.000 0.00 0.00 0.00 3.66
107 108 1.017387 GGAATCAACGAGGACATGGC 58.983 55.000 0.00 0.00 0.00 4.40
108 109 0.652592 GAATCAACGAGGACATGGCG 59.347 55.000 0.00 0.00 0.00 5.69
109 110 0.744414 AATCAACGAGGACATGGCGG 60.744 55.000 0.00 0.00 0.00 6.13
110 111 3.499737 CAACGAGGACATGGCGGC 61.500 66.667 0.00 0.00 0.00 6.53
111 112 4.778143 AACGAGGACATGGCGGCC 62.778 66.667 13.32 13.32 0.00 6.13
125 126 4.162690 GGCCGCCACCTAGGTCAG 62.163 72.222 12.84 7.85 40.61 3.51
126 127 3.075005 GCCGCCACCTAGGTCAGA 61.075 66.667 12.84 0.00 40.61 3.27
127 128 3.082579 GCCGCCACCTAGGTCAGAG 62.083 68.421 12.84 8.34 40.61 3.35
128 129 1.379977 CCGCCACCTAGGTCAGAGA 60.380 63.158 12.84 0.00 40.61 3.10
129 130 1.388065 CCGCCACCTAGGTCAGAGAG 61.388 65.000 12.84 0.00 40.61 3.20
130 131 0.394488 CGCCACCTAGGTCAGAGAGA 60.394 60.000 12.84 0.00 40.61 3.10
131 132 1.398692 GCCACCTAGGTCAGAGAGAG 58.601 60.000 12.84 0.00 40.61 3.20
132 133 2.026905 GCCACCTAGGTCAGAGAGAGG 61.027 61.905 12.84 8.93 40.61 3.69
133 134 1.410932 CCACCTAGGTCAGAGAGAGGG 60.411 61.905 12.84 2.78 0.00 4.30
134 135 1.566703 CACCTAGGTCAGAGAGAGGGA 59.433 57.143 12.84 0.00 0.00 4.20
135 136 1.850345 ACCTAGGTCAGAGAGAGGGAG 59.150 57.143 9.21 0.00 0.00 4.30
136 137 2.131854 CCTAGGTCAGAGAGAGGGAGA 58.868 57.143 0.00 0.00 0.00 3.71
137 138 2.716424 CCTAGGTCAGAGAGAGGGAGAT 59.284 54.545 0.00 0.00 0.00 2.75
138 139 2.754012 AGGTCAGAGAGAGGGAGATG 57.246 55.000 0.00 0.00 0.00 2.90
139 140 2.213310 AGGTCAGAGAGAGGGAGATGA 58.787 52.381 0.00 0.00 0.00 2.92
140 141 2.175499 AGGTCAGAGAGAGGGAGATGAG 59.825 54.545 0.00 0.00 0.00 2.90
141 142 2.586425 GTCAGAGAGAGGGAGATGAGG 58.414 57.143 0.00 0.00 0.00 3.86
142 143 1.498576 TCAGAGAGAGGGAGATGAGGG 59.501 57.143 0.00 0.00 0.00 4.30
143 144 1.498576 CAGAGAGAGGGAGATGAGGGA 59.501 57.143 0.00 0.00 0.00 4.20
144 145 1.782752 AGAGAGAGGGAGATGAGGGAG 59.217 57.143 0.00 0.00 0.00 4.30
145 146 1.780309 GAGAGAGGGAGATGAGGGAGA 59.220 57.143 0.00 0.00 0.00 3.71
146 147 1.782752 AGAGAGGGAGATGAGGGAGAG 59.217 57.143 0.00 0.00 0.00 3.20
147 148 1.780309 GAGAGGGAGATGAGGGAGAGA 59.220 57.143 0.00 0.00 0.00 3.10
148 149 1.782752 AGAGGGAGATGAGGGAGAGAG 59.217 57.143 0.00 0.00 0.00 3.20
149 150 1.499007 GAGGGAGATGAGGGAGAGAGT 59.501 57.143 0.00 0.00 0.00 3.24
150 151 1.217689 AGGGAGATGAGGGAGAGAGTG 59.782 57.143 0.00 0.00 0.00 3.51
151 152 1.216678 GGGAGATGAGGGAGAGAGTGA 59.783 57.143 0.00 0.00 0.00 3.41
152 153 2.358721 GGGAGATGAGGGAGAGAGTGAA 60.359 54.545 0.00 0.00 0.00 3.18
153 154 3.575805 GGAGATGAGGGAGAGAGTGAAT 58.424 50.000 0.00 0.00 0.00 2.57
154 155 3.573967 GGAGATGAGGGAGAGAGTGAATC 59.426 52.174 0.00 0.00 0.00 2.52
155 156 3.221771 AGATGAGGGAGAGAGTGAATCG 58.778 50.000 0.00 0.00 0.00 3.34
156 157 2.808906 TGAGGGAGAGAGTGAATCGA 57.191 50.000 0.00 0.00 0.00 3.59
157 158 2.649190 TGAGGGAGAGAGTGAATCGAG 58.351 52.381 0.00 0.00 0.00 4.04
158 159 2.239907 TGAGGGAGAGAGTGAATCGAGA 59.760 50.000 0.00 0.00 0.00 4.04
159 160 2.878406 GAGGGAGAGAGTGAATCGAGAG 59.122 54.545 0.00 0.00 0.00 3.20
160 161 1.953686 GGGAGAGAGTGAATCGAGAGG 59.046 57.143 0.00 0.00 0.00 3.69
161 162 1.953686 GGAGAGAGTGAATCGAGAGGG 59.046 57.143 0.00 0.00 0.00 4.30
162 163 1.953686 GAGAGAGTGAATCGAGAGGGG 59.046 57.143 0.00 0.00 0.00 4.79
163 164 1.566703 AGAGAGTGAATCGAGAGGGGA 59.433 52.381 0.00 0.00 0.00 4.81
164 165 2.024846 AGAGAGTGAATCGAGAGGGGAA 60.025 50.000 0.00 0.00 0.00 3.97
165 166 2.100087 GAGAGTGAATCGAGAGGGGAAC 59.900 54.545 0.00 0.00 0.00 3.62
166 167 0.818296 AGTGAATCGAGAGGGGAACG 59.182 55.000 0.00 0.00 0.00 3.95
167 168 0.179108 GTGAATCGAGAGGGGAACGG 60.179 60.000 0.00 0.00 0.00 4.44
168 169 0.323999 TGAATCGAGAGGGGAACGGA 60.324 55.000 0.00 0.00 0.00 4.69
169 170 1.041437 GAATCGAGAGGGGAACGGAT 58.959 55.000 0.00 0.00 0.00 4.18
170 171 1.000052 GAATCGAGAGGGGAACGGATC 60.000 57.143 0.00 0.00 0.00 3.36
171 172 0.106167 ATCGAGAGGGGAACGGATCA 60.106 55.000 0.00 0.00 0.00 2.92
172 173 0.752009 TCGAGAGGGGAACGGATCAG 60.752 60.000 0.00 0.00 0.00 2.90
173 174 0.752009 CGAGAGGGGAACGGATCAGA 60.752 60.000 0.00 0.00 0.00 3.27
174 175 1.710816 GAGAGGGGAACGGATCAGAT 58.289 55.000 0.00 0.00 0.00 2.90
175 176 2.043227 GAGAGGGGAACGGATCAGATT 58.957 52.381 0.00 0.00 0.00 2.40
176 177 2.436173 GAGAGGGGAACGGATCAGATTT 59.564 50.000 0.00 0.00 0.00 2.17
177 178 2.171448 AGAGGGGAACGGATCAGATTTG 59.829 50.000 0.00 0.00 0.00 2.32
178 179 2.170607 GAGGGGAACGGATCAGATTTGA 59.829 50.000 0.00 0.00 37.81 2.69
179 180 2.092914 AGGGGAACGGATCAGATTTGAC 60.093 50.000 0.00 0.00 35.83 3.18
180 181 2.289565 GGGAACGGATCAGATTTGACC 58.710 52.381 0.00 0.00 35.83 4.02
181 182 2.289565 GGAACGGATCAGATTTGACCC 58.710 52.381 0.00 0.00 35.83 4.46
184 185 3.476740 GGATCAGATTTGACCCGCA 57.523 52.632 0.00 0.00 35.83 5.69
185 186 1.017387 GGATCAGATTTGACCCGCAC 58.983 55.000 0.00 0.00 35.83 5.34
186 187 1.017387 GATCAGATTTGACCCGCACC 58.983 55.000 0.00 0.00 35.83 5.01
187 188 0.744414 ATCAGATTTGACCCGCACCG 60.744 55.000 0.00 0.00 35.83 4.94
188 189 2.746277 AGATTTGACCCGCACCGC 60.746 61.111 0.00 0.00 0.00 5.68
189 190 3.053291 GATTTGACCCGCACCGCA 61.053 61.111 0.00 0.00 0.00 5.69
190 191 3.322706 GATTTGACCCGCACCGCAC 62.323 63.158 0.00 0.00 0.00 5.34
191 192 3.842925 ATTTGACCCGCACCGCACT 62.843 57.895 0.00 0.00 0.00 4.40
205 206 3.414700 CACTGACAGGCGCCGTTC 61.415 66.667 23.20 21.37 0.00 3.95
206 207 4.681978 ACTGACAGGCGCCGTTCC 62.682 66.667 23.20 12.38 0.00 3.62
239 240 1.922189 CGTTAACGGCCATCTACGC 59.078 57.895 20.24 0.00 35.37 4.42
240 241 1.804273 CGTTAACGGCCATCTACGCG 61.804 60.000 20.24 3.53 35.37 6.01
241 242 1.879430 TTAACGGCCATCTACGCGC 60.879 57.895 5.73 0.00 0.00 6.86
275 276 3.055719 CCAACGTGGCGCCTGATT 61.056 61.111 29.70 15.70 0.00 2.57
276 277 2.480555 CAACGTGGCGCCTGATTC 59.519 61.111 29.70 11.56 0.00 2.52
277 278 3.118454 AACGTGGCGCCTGATTCG 61.118 61.111 29.70 23.52 0.00 3.34
286 287 4.794648 CCTGATTCGCGGGCCCAA 62.795 66.667 24.92 9.41 35.91 4.12
287 288 3.508840 CTGATTCGCGGGCCCAAC 61.509 66.667 24.92 12.72 0.00 3.77
296 297 3.728373 GGGCCCAACCGGTCAGAT 61.728 66.667 19.95 0.00 38.37 2.90
297 298 2.355115 GGCCCAACCGGTCAGATT 59.645 61.111 8.04 0.00 35.67 2.40
298 299 1.749258 GGCCCAACCGGTCAGATTC 60.749 63.158 8.04 0.00 35.67 2.52
299 300 1.002624 GCCCAACCGGTCAGATTCA 60.003 57.895 8.04 0.00 0.00 2.57
300 301 1.026718 GCCCAACCGGTCAGATTCAG 61.027 60.000 8.04 0.00 0.00 3.02
301 302 0.392998 CCCAACCGGTCAGATTCAGG 60.393 60.000 8.04 0.00 0.00 3.86
302 303 0.392998 CCAACCGGTCAGATTCAGGG 60.393 60.000 8.04 0.00 0.00 4.45
303 304 0.324943 CAACCGGTCAGATTCAGGGT 59.675 55.000 8.04 0.00 0.00 4.34
304 305 1.064825 AACCGGTCAGATTCAGGGTT 58.935 50.000 8.04 0.00 0.00 4.11
305 306 1.946984 ACCGGTCAGATTCAGGGTTA 58.053 50.000 0.00 0.00 0.00 2.85
306 307 1.831736 ACCGGTCAGATTCAGGGTTAG 59.168 52.381 0.00 0.00 0.00 2.34
307 308 1.473434 CCGGTCAGATTCAGGGTTAGC 60.473 57.143 0.00 0.00 0.00 3.09
308 309 1.802880 CGGTCAGATTCAGGGTTAGCG 60.803 57.143 0.00 0.00 0.00 4.26
309 310 1.291132 GTCAGATTCAGGGTTAGCGC 58.709 55.000 0.00 0.00 0.00 5.92
310 311 0.179111 TCAGATTCAGGGTTAGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
311 312 0.179111 CAGATTCAGGGTTAGCGCGA 60.179 55.000 12.10 0.00 0.00 5.87
312 313 0.103208 AGATTCAGGGTTAGCGCGAG 59.897 55.000 12.10 0.00 0.00 5.03
330 331 4.934144 CGAAGCGAGCGATTTCAC 57.066 55.556 0.00 0.00 0.00 3.18
331 332 1.014399 CGAAGCGAGCGATTTCACG 60.014 57.895 0.00 0.00 0.00 4.35
332 333 1.403225 CGAAGCGAGCGATTTCACGA 61.403 55.000 0.00 0.00 35.09 4.35
333 334 0.296056 GAAGCGAGCGATTTCACGAG 59.704 55.000 0.00 0.00 35.09 4.18
334 335 0.388649 AAGCGAGCGATTTCACGAGT 60.389 50.000 0.00 0.00 35.09 4.18
335 336 0.388649 AGCGAGCGATTTCACGAGTT 60.389 50.000 0.00 0.00 35.09 3.01
336 337 0.246912 GCGAGCGATTTCACGAGTTG 60.247 55.000 0.00 0.00 35.09 3.16
337 338 0.366871 CGAGCGATTTCACGAGTTGG 59.633 55.000 0.00 0.00 35.09 3.77
338 339 1.429463 GAGCGATTTCACGAGTTGGT 58.571 50.000 0.00 0.00 35.09 3.67
339 340 2.602878 GAGCGATTTCACGAGTTGGTA 58.397 47.619 0.00 0.00 35.09 3.25
340 341 2.599082 GAGCGATTTCACGAGTTGGTAG 59.401 50.000 0.00 0.00 35.09 3.18
341 342 2.029290 AGCGATTTCACGAGTTGGTAGT 60.029 45.455 0.00 0.00 35.09 2.73
342 343 2.735134 GCGATTTCACGAGTTGGTAGTT 59.265 45.455 0.00 0.00 35.09 2.24
343 344 3.185797 GCGATTTCACGAGTTGGTAGTTT 59.814 43.478 0.00 0.00 35.09 2.66
344 345 4.319261 GCGATTTCACGAGTTGGTAGTTTT 60.319 41.667 0.00 0.00 35.09 2.43
345 346 5.744490 CGATTTCACGAGTTGGTAGTTTTT 58.256 37.500 0.00 0.00 35.09 1.94
364 365 5.831702 TTTTTGCCACGGTTTAGTCTAAA 57.168 34.783 0.65 0.65 0.00 1.85
365 366 6.394025 TTTTTGCCACGGTTTAGTCTAAAT 57.606 33.333 8.27 0.00 0.00 1.40
366 367 6.394025 TTTTGCCACGGTTTAGTCTAAATT 57.606 33.333 8.27 0.00 0.00 1.82
367 368 6.394025 TTTGCCACGGTTTAGTCTAAATTT 57.606 33.333 8.27 0.00 0.00 1.82
368 369 5.365403 TGCCACGGTTTAGTCTAAATTTG 57.635 39.130 8.27 6.19 0.00 2.32
369 370 4.216687 TGCCACGGTTTAGTCTAAATTTGG 59.783 41.667 17.60 17.60 31.82 3.28
370 371 4.216902 GCCACGGTTTAGTCTAAATTTGGT 59.783 41.667 20.34 10.64 31.54 3.67
371 372 5.412286 GCCACGGTTTAGTCTAAATTTGGTA 59.588 40.000 20.34 0.00 31.54 3.25
372 373 6.402875 GCCACGGTTTAGTCTAAATTTGGTAG 60.403 42.308 20.34 8.84 31.54 3.18
373 374 6.652062 CCACGGTTTAGTCTAAATTTGGTAGT 59.348 38.462 8.27 0.20 0.00 2.73
374 375 7.173735 CCACGGTTTAGTCTAAATTTGGTAGTT 59.826 37.037 8.27 0.00 0.00 2.24
375 376 8.562052 CACGGTTTAGTCTAAATTTGGTAGTTT 58.438 33.333 8.27 0.00 0.00 2.66
376 377 9.123902 ACGGTTTAGTCTAAATTTGGTAGTTTT 57.876 29.630 8.27 0.00 0.00 2.43
377 378 9.955208 CGGTTTAGTCTAAATTTGGTAGTTTTT 57.045 29.630 8.27 0.00 0.00 1.94
380 381 9.667989 TTTAGTCTAAATTTGGTAGTTTTTCGC 57.332 29.630 0.00 0.00 0.00 4.70
381 382 7.266922 AGTCTAAATTTGGTAGTTTTTCGCA 57.733 32.000 0.00 0.00 0.00 5.10
382 383 7.136772 AGTCTAAATTTGGTAGTTTTTCGCAC 58.863 34.615 0.00 0.00 0.00 5.34
383 384 6.913673 GTCTAAATTTGGTAGTTTTTCGCACA 59.086 34.615 0.00 0.00 0.00 4.57
384 385 7.432838 GTCTAAATTTGGTAGTTTTTCGCACAA 59.567 33.333 0.00 0.00 0.00 3.33
385 386 6.969828 AAATTTGGTAGTTTTTCGCACAAA 57.030 29.167 0.00 0.00 0.00 2.83
386 387 6.969828 AATTTGGTAGTTTTTCGCACAAAA 57.030 29.167 0.00 0.00 31.25 2.44
387 388 6.969828 ATTTGGTAGTTTTTCGCACAAAAA 57.030 29.167 0.00 0.23 31.25 1.94
388 389 5.765072 TTGGTAGTTTTTCGCACAAAAAC 57.235 34.783 19.28 19.28 45.51 2.43
395 396 5.834951 GTTTTTCGCACAAAAACGTAAAGT 58.165 33.333 14.64 0.00 39.40 2.66
396 397 5.423097 TTTTCGCACAAAAACGTAAAGTG 57.577 34.783 0.00 0.00 0.00 3.16
397 398 3.054276 TCGCACAAAAACGTAAAGTGG 57.946 42.857 10.86 3.79 0.00 4.00
398 399 2.419324 TCGCACAAAAACGTAAAGTGGT 59.581 40.909 10.86 0.00 0.00 4.16
399 400 3.620374 TCGCACAAAAACGTAAAGTGGTA 59.380 39.130 10.86 0.00 0.00 3.25
400 401 3.963724 CGCACAAAAACGTAAAGTGGTAG 59.036 43.478 10.86 0.00 0.00 3.18
401 402 4.494526 CGCACAAAAACGTAAAGTGGTAGT 60.495 41.667 10.86 0.00 0.00 2.73
402 403 5.334319 GCACAAAAACGTAAAGTGGTAGTT 58.666 37.500 10.86 0.00 0.00 2.24
403 404 5.801444 GCACAAAAACGTAAAGTGGTAGTTT 59.199 36.000 10.86 0.00 36.70 2.66
404 405 6.308524 GCACAAAAACGTAAAGTGGTAGTTTT 59.691 34.615 10.86 0.00 43.94 2.43
406 407 8.367396 CACAAAAACGTAAAGTGGTAGTTTTTC 58.633 33.333 12.51 0.00 45.83 2.29
407 408 7.271008 ACAAAAACGTAAAGTGGTAGTTTTTCG 59.729 33.333 12.51 11.04 45.83 3.46
408 409 6.421377 AAACGTAAAGTGGTAGTTTTTCGT 57.579 33.333 0.00 0.00 34.27 3.85
409 410 5.641777 ACGTAAAGTGGTAGTTTTTCGTC 57.358 39.130 0.00 0.00 30.50 4.20
410 411 5.108517 ACGTAAAGTGGTAGTTTTTCGTCA 58.891 37.500 0.00 0.00 30.50 4.35
411 412 5.005682 ACGTAAAGTGGTAGTTTTTCGTCAC 59.994 40.000 0.00 0.00 30.50 3.67
412 413 4.525411 AAAGTGGTAGTTTTTCGTCACG 57.475 40.909 0.00 0.00 0.00 4.35
413 414 3.169355 AGTGGTAGTTTTTCGTCACGT 57.831 42.857 0.00 0.00 0.00 4.49
414 415 3.524541 AGTGGTAGTTTTTCGTCACGTT 58.475 40.909 0.00 0.00 0.00 3.99
415 416 3.934579 AGTGGTAGTTTTTCGTCACGTTT 59.065 39.130 0.00 0.00 0.00 3.60
416 417 4.033243 AGTGGTAGTTTTTCGTCACGTTTC 59.967 41.667 0.00 0.00 0.00 2.78
417 418 3.309410 TGGTAGTTTTTCGTCACGTTTCC 59.691 43.478 0.00 0.00 0.00 3.13
418 419 2.724744 AGTTTTTCGTCACGTTTCCG 57.275 45.000 0.00 0.00 40.83 4.30
420 421 2.029606 AGTTTTTCGTCACGTTTCCGTC 59.970 45.455 0.00 0.00 46.28 4.79
421 422 1.638133 TTTTCGTCACGTTTCCGTCA 58.362 45.000 0.00 0.00 46.28 4.35
422 423 1.638133 TTTCGTCACGTTTCCGTCAA 58.362 45.000 0.00 0.00 46.28 3.18
423 424 1.855513 TTCGTCACGTTTCCGTCAAT 58.144 45.000 0.00 0.00 46.28 2.57
424 425 1.855513 TCGTCACGTTTCCGTCAATT 58.144 45.000 0.00 0.00 46.28 2.32
425 426 1.523515 TCGTCACGTTTCCGTCAATTG 59.476 47.619 0.00 0.00 46.28 2.32
426 427 1.259507 CGTCACGTTTCCGTCAATTGT 59.740 47.619 5.13 0.00 46.28 2.71
427 428 2.635444 GTCACGTTTCCGTCAATTGTG 58.365 47.619 5.13 0.00 46.28 3.33
428 429 1.600013 TCACGTTTCCGTCAATTGTGG 59.400 47.619 5.13 9.06 46.28 4.17
429 430 1.332375 CACGTTTCCGTCAATTGTGGT 59.668 47.619 15.77 0.00 46.28 4.16
430 431 2.544686 CACGTTTCCGTCAATTGTGGTA 59.455 45.455 15.77 6.94 46.28 3.25
431 432 2.803956 ACGTTTCCGTCAATTGTGGTAG 59.196 45.455 15.77 10.02 46.28 3.18
432 433 2.803956 CGTTTCCGTCAATTGTGGTAGT 59.196 45.455 15.77 0.00 0.00 2.73
433 434 3.249080 CGTTTCCGTCAATTGTGGTAGTT 59.751 43.478 15.77 0.00 0.00 2.24
434 435 4.260866 CGTTTCCGTCAATTGTGGTAGTTT 60.261 41.667 15.77 0.00 0.00 2.66
435 436 5.584442 GTTTCCGTCAATTGTGGTAGTTTT 58.416 37.500 15.77 0.00 0.00 2.43
436 437 5.838531 TTCCGTCAATTGTGGTAGTTTTT 57.161 34.783 15.77 0.00 0.00 1.94
437 438 5.176407 TCCGTCAATTGTGGTAGTTTTTG 57.824 39.130 15.77 0.00 0.00 2.44
438 439 4.036971 TCCGTCAATTGTGGTAGTTTTTGG 59.963 41.667 15.77 1.16 0.00 3.28
439 440 4.202070 CCGTCAATTGTGGTAGTTTTTGGT 60.202 41.667 5.13 0.00 0.00 3.67
440 441 5.344884 CGTCAATTGTGGTAGTTTTTGGTT 58.655 37.500 5.13 0.00 0.00 3.67
441 442 6.459848 CCGTCAATTGTGGTAGTTTTTGGTTA 60.460 38.462 5.13 0.00 0.00 2.85
442 443 6.973474 CGTCAATTGTGGTAGTTTTTGGTTAA 59.027 34.615 5.13 0.00 0.00 2.01
443 444 7.488471 CGTCAATTGTGGTAGTTTTTGGTTAAA 59.512 33.333 5.13 0.00 0.00 1.52
444 445 9.320352 GTCAATTGTGGTAGTTTTTGGTTAAAT 57.680 29.630 5.13 0.00 0.00 1.40
449 450 7.863666 TGTGGTAGTTTTTGGTTAAATACTCG 58.136 34.615 0.00 0.00 38.47 4.18
450 451 7.041235 TGTGGTAGTTTTTGGTTAAATACTCGG 60.041 37.037 0.00 0.00 38.47 4.63
451 452 6.072563 TGGTAGTTTTTGGTTAAATACTCGGC 60.073 38.462 0.00 0.00 38.47 5.54
452 453 5.381174 AGTTTTTGGTTAAATACTCGGCC 57.619 39.130 0.00 0.00 34.37 6.13
453 454 4.828387 AGTTTTTGGTTAAATACTCGGCCA 59.172 37.500 2.24 0.00 34.37 5.36
454 455 5.048294 AGTTTTTGGTTAAATACTCGGCCAG 60.048 40.000 2.24 1.58 34.37 4.85
501 502 1.221466 TTTCAGCGTCTCCTGCAACG 61.221 55.000 4.31 4.31 41.68 4.10
506 507 2.091112 CGTCTCCTGCAACGCTCTG 61.091 63.158 0.00 0.00 31.48 3.35
549 550 3.058913 GTGCGTGACAAACAAACAAAGAC 59.941 43.478 0.00 0.00 0.00 3.01
554 555 3.697045 TGACAAACAAACAAAGACGGGAT 59.303 39.130 0.00 0.00 0.00 3.85
555 556 4.040445 ACAAACAAACAAAGACGGGATG 57.960 40.909 0.00 0.00 0.00 3.51
556 557 3.697045 ACAAACAAACAAAGACGGGATGA 59.303 39.130 0.00 0.00 0.00 2.92
610 611 3.633774 GCGTTGCGTCTTTACACTC 57.366 52.632 0.00 0.00 0.00 3.51
620 621 3.169733 GTCTTTACACTCCATCGTCGAC 58.830 50.000 5.18 5.18 0.00 4.20
633 634 3.245346 TCGACACCCACATGCCCA 61.245 61.111 0.00 0.00 0.00 5.36
634 635 2.747460 CGACACCCACATGCCCAG 60.747 66.667 0.00 0.00 0.00 4.45
648 649 2.033757 CCAGCCAGTTGAGCAGCT 59.966 61.111 0.00 0.00 35.52 4.24
649 650 1.297689 CCAGCCAGTTGAGCAGCTA 59.702 57.895 0.00 0.00 33.33 3.32
650 651 0.743701 CCAGCCAGTTGAGCAGCTAG 60.744 60.000 0.00 0.00 33.33 3.42
651 652 1.078567 AGCCAGTTGAGCAGCTAGC 60.079 57.895 6.62 6.62 46.19 3.42
778 908 2.669240 CTCCCCTCAAACCGGACC 59.331 66.667 9.46 0.00 0.00 4.46
802 937 1.859302 CTGCCCTACTTGTCTCTCCT 58.141 55.000 0.00 0.00 0.00 3.69
803 938 1.754226 CTGCCCTACTTGTCTCTCCTC 59.246 57.143 0.00 0.00 0.00 3.71
804 939 1.359474 TGCCCTACTTGTCTCTCCTCT 59.641 52.381 0.00 0.00 0.00 3.69
805 940 2.028876 GCCCTACTTGTCTCTCCTCTC 58.971 57.143 0.00 0.00 0.00 3.20
806 941 2.661718 CCCTACTTGTCTCTCCTCTCC 58.338 57.143 0.00 0.00 0.00 3.71
857 1003 1.153168 CACCGTCCCATCCCATCAC 60.153 63.158 0.00 0.00 0.00 3.06
869 1015 2.187946 CATCACCCACGCTCCCTC 59.812 66.667 0.00 0.00 0.00 4.30
870 1016 3.083997 ATCACCCACGCTCCCTCC 61.084 66.667 0.00 0.00 0.00 4.30
890 1037 5.024803 TCCCTCCCTCTATAAATACCAGG 57.975 47.826 0.00 0.00 0.00 4.45
976 1136 0.179161 CGATCAAGAAGCTCCGTCGT 60.179 55.000 0.00 0.00 0.00 4.34
980 1140 2.627737 AAGAAGCTCCGTCGTCGCT 61.628 57.895 0.00 0.23 35.54 4.93
981 1141 1.303799 AAGAAGCTCCGTCGTCGCTA 61.304 55.000 6.02 0.00 32.90 4.26
982 1142 1.297745 GAAGCTCCGTCGTCGCTAG 60.298 63.158 6.02 0.00 32.90 3.42
983 1143 2.649843 GAAGCTCCGTCGTCGCTAGG 62.650 65.000 6.02 0.00 32.90 3.02
984 1144 4.253257 GCTCCGTCGTCGCTAGGG 62.253 72.222 0.00 0.00 35.54 3.53
985 1145 2.513204 CTCCGTCGTCGCTAGGGA 60.513 66.667 5.20 5.20 35.54 4.20
986 1146 2.046023 TCCGTCGTCGCTAGGGAA 60.046 61.111 11.59 0.00 35.54 3.97
987 1147 2.049475 CTCCGTCGTCGCTAGGGAAG 62.049 65.000 11.59 13.59 35.54 3.46
997 1157 3.056322 GTCGCTAGGGAAGTAGGAACAAA 60.056 47.826 11.59 0.00 0.00 2.83
1245 1405 2.261671 GCCGTCGTCACCATCACT 59.738 61.111 0.00 0.00 0.00 3.41
1302 1462 1.448540 CTGCGTCGCCCAGATCTTT 60.449 57.895 15.88 0.00 32.03 2.52
1329 1489 3.842923 CAGCAGGTCCGCCGATCT 61.843 66.667 2.61 0.00 40.50 2.75
1331 1491 4.933064 GCAGGTCCGCCGATCTCG 62.933 72.222 0.00 0.00 40.50 4.04
1332 1492 3.209812 CAGGTCCGCCGATCTCGA 61.210 66.667 0.22 0.00 43.02 4.04
1333 1493 2.203365 AGGTCCGCCGATCTCGAT 60.203 61.111 0.22 0.00 43.02 3.59
1334 1494 1.072678 AGGTCCGCCGATCTCGATA 59.927 57.895 0.22 0.00 43.02 2.92
1335 1495 0.322636 AGGTCCGCCGATCTCGATAT 60.323 55.000 0.22 0.00 43.02 1.63
1341 1519 3.056821 TCCGCCGATCTCGATATTCATTT 60.057 43.478 0.22 0.00 43.02 2.32
1345 1523 5.062683 CGCCGATCTCGATATTCATTTCATT 59.937 40.000 0.22 0.00 43.02 2.57
1346 1524 6.473521 GCCGATCTCGATATTCATTTCATTC 58.526 40.000 0.22 0.00 43.02 2.67
1347 1525 6.456181 GCCGATCTCGATATTCATTTCATTCC 60.456 42.308 0.22 0.00 43.02 3.01
1352 1530 6.646653 TCTCGATATTCATTTCATTCCCTTCG 59.353 38.462 0.00 0.00 0.00 3.79
1353 1531 5.179368 TCGATATTCATTTCATTCCCTTCGC 59.821 40.000 0.00 0.00 0.00 4.70
1354 1532 5.617751 CGATATTCATTTCATTCCCTTCGCC 60.618 44.000 0.00 0.00 0.00 5.54
1355 1533 2.806945 TCATTTCATTCCCTTCGCCT 57.193 45.000 0.00 0.00 0.00 5.52
1367 1545 2.356818 CTTCGCCTCCGATCACTCCC 62.357 65.000 0.00 0.00 43.97 4.30
1389 1567 2.162809 TCGTCTTCGATCGACCAATCAA 59.837 45.455 19.26 0.00 41.35 2.57
1390 1568 3.116300 CGTCTTCGATCGACCAATCAAT 58.884 45.455 19.26 0.00 39.71 2.57
1391 1569 3.180584 CGTCTTCGATCGACCAATCAATC 59.819 47.826 19.26 0.67 39.71 2.67
1392 1570 4.112634 GTCTTCGATCGACCAATCAATCA 58.887 43.478 19.26 0.00 0.00 2.57
1420 1605 1.721664 CCATGGACGCAAGCTGATGG 61.722 60.000 5.56 0.00 45.62 3.51
1530 1720 4.269523 GTGAGCCACCACCAGCCA 62.270 66.667 0.00 0.00 0.00 4.75
1531 1721 4.269523 TGAGCCACCACCAGCCAC 62.270 66.667 0.00 0.00 0.00 5.01
1533 1723 4.275508 AGCCACCACCAGCCACAG 62.276 66.667 0.00 0.00 0.00 3.66
1546 1736 3.663176 CACAGCCGTGGTTGCAGG 61.663 66.667 2.34 0.00 39.64 4.85
1547 1737 3.872603 ACAGCCGTGGTTGCAGGA 61.873 61.111 2.34 0.00 0.00 3.86
1550 1740 3.660111 GCCGTGGTTGCAGGACAC 61.660 66.667 7.25 7.25 0.00 3.67
1561 1751 4.457496 AGGACACCAGCATCGCCG 62.457 66.667 0.00 0.00 0.00 6.46
1585 1775 4.069232 TCCGGCAGCAGGAGAACG 62.069 66.667 10.69 0.00 33.19 3.95
1590 1780 1.592223 GCAGCAGGAGAACGGTAGT 59.408 57.895 0.00 0.00 0.00 2.73
1600 1793 0.864797 GAACGGTAGTAGCTTCGCCG 60.865 60.000 20.95 20.95 46.83 6.46
1626 1819 3.497932 GCGCTTCTGCCAGAGCTG 61.498 66.667 0.00 8.24 40.80 4.24
1630 1823 0.107800 GCTTCTGCCAGAGCTGATGA 60.108 55.000 0.00 0.00 45.15 2.92
1632 1825 0.107800 TTCTGCCAGAGCTGATGAGC 60.108 55.000 0.00 0.00 45.15 4.26
1771 1964 7.093684 ACTCCCTGTAGATTGTAGAAGAAGAAC 60.094 40.741 0.00 0.00 0.00 3.01
1794 1993 8.428186 AACATCATGATAAAACCATGCATTTC 57.572 30.769 8.15 0.00 40.74 2.17
1795 1994 7.557724 ACATCATGATAAAACCATGCATTTCA 58.442 30.769 8.15 0.00 40.74 2.69
1814 2013 1.069022 CACATGCTTCCAACAACCTCG 60.069 52.381 0.00 0.00 0.00 4.63
1886 2086 3.882888 CCAGAGATCGAGCTAGAAGAACT 59.117 47.826 1.61 0.00 0.00 3.01
2025 2231 1.669779 GCATGAGTGGCTCAGTTGATC 59.330 52.381 0.00 0.00 44.08 2.92
2039 2245 6.565435 GCTCAGTTGATCAATGATGATTACCG 60.565 42.308 12.12 5.93 46.30 4.02
2081 2287 4.022849 GCTTATATGTTGCAAGATCACCCC 60.023 45.833 13.03 0.00 0.00 4.95
2090 2296 2.039084 GCAAGATCACCCCTTATCGGAT 59.961 50.000 0.00 0.00 33.16 4.18
2093 2299 5.133221 CAAGATCACCCCTTATCGGATTTT 58.867 41.667 0.00 0.00 33.16 1.82
2094 2300 5.388599 AGATCACCCCTTATCGGATTTTT 57.611 39.130 0.00 0.00 33.16 1.94
2095 2301 6.509523 AGATCACCCCTTATCGGATTTTTA 57.490 37.500 0.00 0.00 33.16 1.52
2098 2304 8.004801 AGATCACCCCTTATCGGATTTTTATTT 58.995 33.333 0.00 0.00 33.16 1.40
2270 2542 4.039973 TGAACCAAAACTCTACCGTCTGAT 59.960 41.667 0.00 0.00 0.00 2.90
2274 2546 2.949451 AACTCTACCGTCTGATGCTG 57.051 50.000 0.00 0.00 0.00 4.41
2284 2556 2.648059 GTCTGATGCTGCCCTTTGTAT 58.352 47.619 0.00 0.00 0.00 2.29
2286 2558 1.066605 CTGATGCTGCCCTTTGTATGC 59.933 52.381 0.00 0.00 0.00 3.14
2295 2567 5.163561 GCTGCCCTTTGTATGCTTATTTGTA 60.164 40.000 0.00 0.00 0.00 2.41
2300 2572 7.209475 CCCTTTGTATGCTTATTTGTATTGGG 58.791 38.462 0.00 0.00 0.00 4.12
2338 2615 3.689161 TGATAGTGCATCCCAAAAGTTCG 59.311 43.478 0.00 0.00 32.09 3.95
2385 2663 5.356751 ACAAGTTACATTTCTGCACTGTTGA 59.643 36.000 0.00 0.00 0.00 3.18
2400 2678 5.063186 GCACTGTTGATCTGTTGTATCTCAG 59.937 44.000 0.00 0.00 34.93 3.35
2429 2719 3.580794 AACTGTCAGTTTTACGCGAAC 57.419 42.857 15.93 7.16 34.11 3.95
2525 2819 5.570320 ACTAGTGCATACCAAAAGTCCAAT 58.430 37.500 0.00 0.00 0.00 3.16
2542 2840 6.740110 AGTCCAATGAAGAGTTACTATAGCG 58.260 40.000 0.00 0.00 0.00 4.26
2628 2926 6.978674 TTCATAGCTAGGCTTGTATACACT 57.021 37.500 4.68 2.34 40.44 3.55
2629 2927 8.523658 CATTCATAGCTAGGCTTGTATACACTA 58.476 37.037 4.68 3.45 40.44 2.74
2630 2928 7.450124 TCATAGCTAGGCTTGTATACACTAC 57.550 40.000 4.68 0.00 40.44 2.73
2631 2929 7.232188 TCATAGCTAGGCTTGTATACACTACT 58.768 38.462 4.68 6.36 40.44 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.669569 TTTGGACGCTGCTGCCTC 60.670 61.111 10.24 7.95 35.36 4.70
26 27 2.965716 AAGTTTGGACGCTGCTGCCT 62.966 55.000 10.24 0.00 35.36 4.75
27 28 2.555547 AAGTTTGGACGCTGCTGCC 61.556 57.895 10.24 0.00 35.36 4.85
28 29 1.370900 CAAGTTTGGACGCTGCTGC 60.371 57.895 5.34 5.34 0.00 5.25
29 30 0.040958 GACAAGTTTGGACGCTGCTG 60.041 55.000 0.00 0.00 0.00 4.41
30 31 0.179045 AGACAAGTTTGGACGCTGCT 60.179 50.000 0.00 0.00 0.00 4.24
31 32 0.235926 GAGACAAGTTTGGACGCTGC 59.764 55.000 0.00 0.00 0.00 5.25
32 33 0.508641 CGAGACAAGTTTGGACGCTG 59.491 55.000 0.00 0.00 0.00 5.18
33 34 1.222115 GCGAGACAAGTTTGGACGCT 61.222 55.000 17.75 3.31 41.14 5.07
34 35 1.204312 GCGAGACAAGTTTGGACGC 59.796 57.895 13.19 13.19 39.28 5.19
35 36 1.860078 GGCGAGACAAGTTTGGACG 59.140 57.895 0.00 0.00 0.00 4.79
36 37 1.860078 CGGCGAGACAAGTTTGGAC 59.140 57.895 0.00 0.00 0.00 4.02
37 38 1.959226 GCGGCGAGACAAGTTTGGA 60.959 57.895 12.98 0.00 0.00 3.53
38 39 2.556287 GCGGCGAGACAAGTTTGG 59.444 61.111 12.98 0.00 0.00 3.28
39 40 2.175184 CTGGCGGCGAGACAAGTTTG 62.175 60.000 12.98 0.00 37.47 2.93
40 41 1.961277 CTGGCGGCGAGACAAGTTT 60.961 57.895 12.98 0.00 37.47 2.66
41 42 2.357517 CTGGCGGCGAGACAAGTT 60.358 61.111 12.98 0.00 37.47 2.66
84 85 0.530744 TGTCCTCGTTGATTCCGGAG 59.469 55.000 3.34 0.00 0.00 4.63
85 86 1.134818 CATGTCCTCGTTGATTCCGGA 60.135 52.381 0.00 0.00 0.00 5.14
86 87 1.290203 CATGTCCTCGTTGATTCCGG 58.710 55.000 0.00 0.00 0.00 5.14
87 88 1.290203 CCATGTCCTCGTTGATTCCG 58.710 55.000 0.00 0.00 0.00 4.30
88 89 1.017387 GCCATGTCCTCGTTGATTCC 58.983 55.000 0.00 0.00 0.00 3.01
89 90 0.652592 CGCCATGTCCTCGTTGATTC 59.347 55.000 0.00 0.00 0.00 2.52
90 91 0.744414 CCGCCATGTCCTCGTTGATT 60.744 55.000 0.00 0.00 0.00 2.57
91 92 1.153369 CCGCCATGTCCTCGTTGAT 60.153 57.895 0.00 0.00 0.00 2.57
92 93 2.264480 CCGCCATGTCCTCGTTGA 59.736 61.111 0.00 0.00 0.00 3.18
93 94 3.499737 GCCGCCATGTCCTCGTTG 61.500 66.667 0.00 0.00 0.00 4.10
94 95 4.778143 GGCCGCCATGTCCTCGTT 62.778 66.667 3.91 0.00 0.00 3.85
108 109 4.162690 CTGACCTAGGTGGCGGCC 62.163 72.222 22.10 13.32 40.22 6.13
109 110 3.075005 TCTGACCTAGGTGGCGGC 61.075 66.667 22.10 4.67 40.22 6.53
110 111 1.379977 TCTCTGACCTAGGTGGCGG 60.380 63.158 22.10 11.30 40.22 6.13
111 112 0.394488 TCTCTCTGACCTAGGTGGCG 60.394 60.000 22.10 7.26 40.22 5.69
112 113 1.398692 CTCTCTCTGACCTAGGTGGC 58.601 60.000 22.10 6.38 40.22 5.01
113 114 1.410932 CCCTCTCTCTGACCTAGGTGG 60.411 61.905 22.10 11.49 42.93 4.61
114 115 1.566703 TCCCTCTCTCTGACCTAGGTG 59.433 57.143 22.10 5.95 0.00 4.00
115 116 1.850345 CTCCCTCTCTCTGACCTAGGT 59.150 57.143 16.26 16.26 0.00 3.08
116 117 2.131854 TCTCCCTCTCTCTGACCTAGG 58.868 57.143 7.41 7.41 0.00 3.02
117 118 3.394274 TCATCTCCCTCTCTCTGACCTAG 59.606 52.174 0.00 0.00 0.00 3.02
118 119 3.394274 CTCATCTCCCTCTCTCTGACCTA 59.606 52.174 0.00 0.00 0.00 3.08
119 120 2.175499 CTCATCTCCCTCTCTCTGACCT 59.825 54.545 0.00 0.00 0.00 3.85
120 121 2.586425 CTCATCTCCCTCTCTCTGACC 58.414 57.143 0.00 0.00 0.00 4.02
121 122 2.586425 CCTCATCTCCCTCTCTCTGAC 58.414 57.143 0.00 0.00 0.00 3.51
122 123 1.498576 CCCTCATCTCCCTCTCTCTGA 59.501 57.143 0.00 0.00 0.00 3.27
123 124 1.498576 TCCCTCATCTCCCTCTCTCTG 59.501 57.143 0.00 0.00 0.00 3.35
124 125 1.782752 CTCCCTCATCTCCCTCTCTCT 59.217 57.143 0.00 0.00 0.00 3.10
125 126 1.780309 TCTCCCTCATCTCCCTCTCTC 59.220 57.143 0.00 0.00 0.00 3.20
126 127 1.782752 CTCTCCCTCATCTCCCTCTCT 59.217 57.143 0.00 0.00 0.00 3.10
127 128 1.780309 TCTCTCCCTCATCTCCCTCTC 59.220 57.143 0.00 0.00 0.00 3.20
128 129 1.782752 CTCTCTCCCTCATCTCCCTCT 59.217 57.143 0.00 0.00 0.00 3.69
129 130 1.499007 ACTCTCTCCCTCATCTCCCTC 59.501 57.143 0.00 0.00 0.00 4.30
130 131 1.217689 CACTCTCTCCCTCATCTCCCT 59.782 57.143 0.00 0.00 0.00 4.20
131 132 1.216678 TCACTCTCTCCCTCATCTCCC 59.783 57.143 0.00 0.00 0.00 4.30
132 133 2.746279 TCACTCTCTCCCTCATCTCC 57.254 55.000 0.00 0.00 0.00 3.71
133 134 3.253188 CGATTCACTCTCTCCCTCATCTC 59.747 52.174 0.00 0.00 0.00 2.75
134 135 3.117701 TCGATTCACTCTCTCCCTCATCT 60.118 47.826 0.00 0.00 0.00 2.90
135 136 3.218453 TCGATTCACTCTCTCCCTCATC 58.782 50.000 0.00 0.00 0.00 2.92
136 137 3.117701 TCTCGATTCACTCTCTCCCTCAT 60.118 47.826 0.00 0.00 0.00 2.90
137 138 2.239907 TCTCGATTCACTCTCTCCCTCA 59.760 50.000 0.00 0.00 0.00 3.86
138 139 2.878406 CTCTCGATTCACTCTCTCCCTC 59.122 54.545 0.00 0.00 0.00 4.30
139 140 2.422803 CCTCTCGATTCACTCTCTCCCT 60.423 54.545 0.00 0.00 0.00 4.20
140 141 1.953686 CCTCTCGATTCACTCTCTCCC 59.046 57.143 0.00 0.00 0.00 4.30
141 142 1.953686 CCCTCTCGATTCACTCTCTCC 59.046 57.143 0.00 0.00 0.00 3.71
142 143 1.953686 CCCCTCTCGATTCACTCTCTC 59.046 57.143 0.00 0.00 0.00 3.20
143 144 1.566703 TCCCCTCTCGATTCACTCTCT 59.433 52.381 0.00 0.00 0.00 3.10
144 145 2.060050 TCCCCTCTCGATTCACTCTC 57.940 55.000 0.00 0.00 0.00 3.20
145 146 2.104170 GTTCCCCTCTCGATTCACTCT 58.896 52.381 0.00 0.00 0.00 3.24
146 147 1.202313 CGTTCCCCTCTCGATTCACTC 60.202 57.143 0.00 0.00 0.00 3.51
147 148 0.818296 CGTTCCCCTCTCGATTCACT 59.182 55.000 0.00 0.00 0.00 3.41
148 149 0.179108 CCGTTCCCCTCTCGATTCAC 60.179 60.000 0.00 0.00 0.00 3.18
149 150 0.323999 TCCGTTCCCCTCTCGATTCA 60.324 55.000 0.00 0.00 0.00 2.57
150 151 1.000052 GATCCGTTCCCCTCTCGATTC 60.000 57.143 0.00 0.00 0.00 2.52
151 152 1.041437 GATCCGTTCCCCTCTCGATT 58.959 55.000 0.00 0.00 0.00 3.34
152 153 0.106167 TGATCCGTTCCCCTCTCGAT 60.106 55.000 0.00 0.00 0.00 3.59
153 154 0.752009 CTGATCCGTTCCCCTCTCGA 60.752 60.000 0.00 0.00 0.00 4.04
154 155 0.752009 TCTGATCCGTTCCCCTCTCG 60.752 60.000 0.00 0.00 0.00 4.04
155 156 1.710816 ATCTGATCCGTTCCCCTCTC 58.289 55.000 0.00 0.00 0.00 3.20
156 157 2.171448 CAAATCTGATCCGTTCCCCTCT 59.829 50.000 0.00 0.00 0.00 3.69
157 158 2.170607 TCAAATCTGATCCGTTCCCCTC 59.829 50.000 0.00 0.00 0.00 4.30
158 159 2.092914 GTCAAATCTGATCCGTTCCCCT 60.093 50.000 0.00 0.00 33.05 4.79
159 160 2.289565 GTCAAATCTGATCCGTTCCCC 58.710 52.381 0.00 0.00 33.05 4.81
160 161 2.289565 GGTCAAATCTGATCCGTTCCC 58.710 52.381 0.00 0.00 33.05 3.97
161 162 2.289565 GGGTCAAATCTGATCCGTTCC 58.710 52.381 0.00 0.00 43.06 3.62
167 168 1.017387 GGTGCGGGTCAAATCTGATC 58.983 55.000 0.00 0.00 33.05 2.92
168 169 0.744414 CGGTGCGGGTCAAATCTGAT 60.744 55.000 0.00 0.00 33.05 2.90
169 170 1.375396 CGGTGCGGGTCAAATCTGA 60.375 57.895 0.00 0.00 0.00 3.27
170 171 3.039202 GCGGTGCGGGTCAAATCTG 62.039 63.158 0.00 0.00 0.00 2.90
171 172 2.746277 GCGGTGCGGGTCAAATCT 60.746 61.111 0.00 0.00 0.00 2.40
172 173 3.053291 TGCGGTGCGGGTCAAATC 61.053 61.111 0.00 0.00 0.00 2.17
173 174 3.361977 GTGCGGTGCGGGTCAAAT 61.362 61.111 0.00 0.00 0.00 2.32
174 175 4.555709 AGTGCGGTGCGGGTCAAA 62.556 61.111 0.00 0.00 0.00 2.69
188 189 3.414700 GAACGGCGCCTGTCAGTG 61.415 66.667 26.68 9.51 0.00 3.66
189 190 4.681978 GGAACGGCGCCTGTCAGT 62.682 66.667 26.68 11.95 0.00 3.41
221 222 1.804273 CGCGTAGATGGCCGTTAACG 61.804 60.000 20.99 20.99 39.44 3.18
222 223 1.922189 CGCGTAGATGGCCGTTAAC 59.078 57.895 0.00 0.00 0.00 2.01
223 224 1.879430 GCGCGTAGATGGCCGTTAA 60.879 57.895 8.43 0.00 0.00 2.01
224 225 2.278989 GCGCGTAGATGGCCGTTA 60.279 61.111 8.43 0.00 0.00 3.18
245 246 3.122971 GTTGGCTAACGGTCGCCC 61.123 66.667 14.22 0.00 45.71 6.13
258 259 3.039202 GAATCAGGCGCCACGTTGG 62.039 63.158 31.54 10.51 41.55 3.77
259 260 2.480555 GAATCAGGCGCCACGTTG 59.519 61.111 31.54 18.66 0.00 4.10
260 261 3.118454 CGAATCAGGCGCCACGTT 61.118 61.111 31.54 19.35 0.00 3.99
269 270 4.794648 TTGGGCCCGCGAATCAGG 62.795 66.667 19.37 0.00 0.00 3.86
270 271 3.508840 GTTGGGCCCGCGAATCAG 61.509 66.667 19.37 0.00 0.00 2.90
279 280 3.282374 AATCTGACCGGTTGGGCCC 62.282 63.158 17.59 17.59 46.01 5.80
280 281 1.749258 GAATCTGACCGGTTGGGCC 60.749 63.158 9.42 0.00 46.01 5.80
282 283 0.392998 CCTGAATCTGACCGGTTGGG 60.393 60.000 9.42 1.86 40.75 4.12
283 284 0.392998 CCCTGAATCTGACCGGTTGG 60.393 60.000 9.42 4.79 42.84 3.77
284 285 0.324943 ACCCTGAATCTGACCGGTTG 59.675 55.000 9.42 5.22 0.00 3.77
285 286 1.064825 AACCCTGAATCTGACCGGTT 58.935 50.000 9.42 0.00 0.00 4.44
286 287 1.831736 CTAACCCTGAATCTGACCGGT 59.168 52.381 6.92 6.92 0.00 5.28
287 288 1.473434 GCTAACCCTGAATCTGACCGG 60.473 57.143 0.00 0.00 0.00 5.28
288 289 1.802880 CGCTAACCCTGAATCTGACCG 60.803 57.143 0.00 0.00 0.00 4.79
289 290 1.941325 CGCTAACCCTGAATCTGACC 58.059 55.000 0.00 0.00 0.00 4.02
290 291 1.291132 GCGCTAACCCTGAATCTGAC 58.709 55.000 0.00 0.00 0.00 3.51
291 292 0.179111 CGCGCTAACCCTGAATCTGA 60.179 55.000 5.56 0.00 0.00 3.27
292 293 0.179111 TCGCGCTAACCCTGAATCTG 60.179 55.000 5.56 0.00 0.00 2.90
293 294 0.103208 CTCGCGCTAACCCTGAATCT 59.897 55.000 5.56 0.00 0.00 2.40
294 295 1.491505 GCTCGCGCTAACCCTGAATC 61.492 60.000 5.56 0.00 0.00 2.52
295 296 1.521681 GCTCGCGCTAACCCTGAAT 60.522 57.895 5.56 0.00 0.00 2.57
296 297 2.125673 GCTCGCGCTAACCCTGAA 60.126 61.111 5.56 0.00 0.00 3.02
297 298 4.492160 CGCTCGCGCTAACCCTGA 62.492 66.667 5.56 0.00 0.00 3.86
298 299 3.982372 TTCGCTCGCGCTAACCCTG 62.982 63.158 5.56 0.00 39.59 4.45
299 300 3.701604 CTTCGCTCGCGCTAACCCT 62.702 63.158 5.56 0.00 39.59 4.34
300 301 3.255379 CTTCGCTCGCGCTAACCC 61.255 66.667 5.56 0.00 39.59 4.11
301 302 3.914733 GCTTCGCTCGCGCTAACC 61.915 66.667 5.56 0.00 39.59 2.85
302 303 4.253273 CGCTTCGCTCGCGCTAAC 62.253 66.667 5.56 0.00 44.33 2.34
309 310 2.390782 GAAATCGCTCGCTTCGCTCG 62.391 60.000 0.00 0.00 0.00 5.03
310 311 1.271258 GAAATCGCTCGCTTCGCTC 59.729 57.895 0.00 0.00 0.00 5.03
311 312 1.446099 TGAAATCGCTCGCTTCGCT 60.446 52.632 0.00 0.00 0.00 4.93
312 313 1.296216 GTGAAATCGCTCGCTTCGC 60.296 57.895 3.19 3.19 0.00 4.70
313 314 1.014399 CGTGAAATCGCTCGCTTCG 60.014 57.895 0.00 0.00 0.00 3.79
314 315 0.296056 CTCGTGAAATCGCTCGCTTC 59.704 55.000 0.00 0.00 0.00 3.86
315 316 0.388649 ACTCGTGAAATCGCTCGCTT 60.389 50.000 0.00 0.00 0.00 4.68
316 317 0.388649 AACTCGTGAAATCGCTCGCT 60.389 50.000 0.00 0.00 0.00 4.93
317 318 0.246912 CAACTCGTGAAATCGCTCGC 60.247 55.000 0.00 0.00 0.00 5.03
318 319 0.366871 CCAACTCGTGAAATCGCTCG 59.633 55.000 0.00 0.00 0.00 5.03
319 320 1.429463 ACCAACTCGTGAAATCGCTC 58.571 50.000 0.00 0.00 0.00 5.03
320 321 2.029290 ACTACCAACTCGTGAAATCGCT 60.029 45.455 0.00 0.00 0.00 4.93
321 322 2.334838 ACTACCAACTCGTGAAATCGC 58.665 47.619 0.00 0.00 0.00 4.58
322 323 4.985044 AAACTACCAACTCGTGAAATCG 57.015 40.909 0.00 0.00 0.00 3.34
342 343 5.831702 TTTAGACTAAACCGTGGCAAAAA 57.168 34.783 3.44 0.00 0.00 1.94
343 344 6.394025 AATTTAGACTAAACCGTGGCAAAA 57.606 33.333 9.82 0.00 0.00 2.44
344 345 6.210078 CAAATTTAGACTAAACCGTGGCAAA 58.790 36.000 9.82 0.00 0.00 3.68
345 346 5.278561 CCAAATTTAGACTAAACCGTGGCAA 60.279 40.000 9.82 0.00 0.00 4.52
346 347 4.216687 CCAAATTTAGACTAAACCGTGGCA 59.783 41.667 9.82 0.00 0.00 4.92
347 348 4.216902 ACCAAATTTAGACTAAACCGTGGC 59.783 41.667 22.03 0.00 33.10 5.01
348 349 5.952526 ACCAAATTTAGACTAAACCGTGG 57.047 39.130 21.20 21.20 34.67 4.94
349 350 7.662604 ACTACCAAATTTAGACTAAACCGTG 57.337 36.000 9.82 8.19 0.00 4.94
350 351 8.681486 AAACTACCAAATTTAGACTAAACCGT 57.319 30.769 9.82 6.56 0.00 4.83
351 352 9.955208 AAAAACTACCAAATTTAGACTAAACCG 57.045 29.630 9.82 2.18 0.00 4.44
354 355 9.667989 GCGAAAAACTACCAAATTTAGACTAAA 57.332 29.630 10.02 10.02 0.00 1.85
355 356 8.838365 TGCGAAAAACTACCAAATTTAGACTAA 58.162 29.630 0.00 0.00 0.00 2.24
356 357 8.284693 GTGCGAAAAACTACCAAATTTAGACTA 58.715 33.333 0.00 0.00 0.00 2.59
357 358 7.136772 GTGCGAAAAACTACCAAATTTAGACT 58.863 34.615 0.00 0.00 0.00 3.24
358 359 6.913673 TGTGCGAAAAACTACCAAATTTAGAC 59.086 34.615 0.00 0.00 0.00 2.59
359 360 7.028926 TGTGCGAAAAACTACCAAATTTAGA 57.971 32.000 0.00 0.00 0.00 2.10
360 361 7.687005 TTGTGCGAAAAACTACCAAATTTAG 57.313 32.000 0.00 0.00 0.00 1.85
361 362 8.475331 TTTTGTGCGAAAAACTACCAAATTTA 57.525 26.923 0.00 0.00 0.00 1.40
362 363 6.969828 TTTGTGCGAAAAACTACCAAATTT 57.030 29.167 0.00 0.00 0.00 1.82
363 364 6.969828 TTTTGTGCGAAAAACTACCAAATT 57.030 29.167 0.00 0.00 0.00 1.82
364 365 6.454450 CGTTTTTGTGCGAAAAACTACCAAAT 60.454 34.615 23.52 0.00 43.94 2.32
365 366 5.164080 CGTTTTTGTGCGAAAAACTACCAAA 60.164 36.000 23.52 0.00 43.94 3.28
366 367 4.323868 CGTTTTTGTGCGAAAAACTACCAA 59.676 37.500 23.52 0.00 43.94 3.67
367 368 3.852536 CGTTTTTGTGCGAAAAACTACCA 59.147 39.130 23.52 0.21 43.94 3.25
368 369 3.853103 ACGTTTTTGTGCGAAAAACTACC 59.147 39.130 23.52 7.78 43.94 3.18
369 370 6.537466 TTACGTTTTTGTGCGAAAAACTAC 57.463 33.333 23.52 9.98 43.94 2.73
370 371 6.800892 ACTTTACGTTTTTGTGCGAAAAACTA 59.199 30.769 23.52 16.04 43.94 2.24
371 372 5.630264 ACTTTACGTTTTTGTGCGAAAAACT 59.370 32.000 23.52 16.68 43.94 2.66
372 373 5.719889 CACTTTACGTTTTTGTGCGAAAAAC 59.280 36.000 19.44 19.44 43.16 2.43
373 374 5.164080 CCACTTTACGTTTTTGTGCGAAAAA 60.164 36.000 0.00 2.84 30.95 1.94
374 375 4.323868 CCACTTTACGTTTTTGTGCGAAAA 59.676 37.500 0.00 0.00 0.00 2.29
375 376 3.852536 CCACTTTACGTTTTTGTGCGAAA 59.147 39.130 0.00 0.00 0.00 3.46
376 377 3.119919 ACCACTTTACGTTTTTGTGCGAA 60.120 39.130 0.00 0.00 0.00 4.70
377 378 2.419324 ACCACTTTACGTTTTTGTGCGA 59.581 40.909 0.00 0.00 0.00 5.10
378 379 2.788030 ACCACTTTACGTTTTTGTGCG 58.212 42.857 0.00 0.00 0.00 5.34
379 380 4.912214 ACTACCACTTTACGTTTTTGTGC 58.088 39.130 0.00 0.00 0.00 4.57
380 381 7.800015 AAAACTACCACTTTACGTTTTTGTG 57.200 32.000 0.00 0.00 35.07 3.33
381 382 7.271008 CGAAAAACTACCACTTTACGTTTTTGT 59.729 33.333 13.71 0.00 43.61 2.83
382 383 7.271008 ACGAAAAACTACCACTTTACGTTTTTG 59.729 33.333 13.71 9.60 43.61 2.44
383 384 7.304735 ACGAAAAACTACCACTTTACGTTTTT 58.695 30.769 9.95 9.95 45.18 1.94
384 385 6.841119 ACGAAAAACTACCACTTTACGTTTT 58.159 32.000 0.00 0.00 38.87 2.43
385 386 6.091986 TGACGAAAAACTACCACTTTACGTTT 59.908 34.615 0.00 0.00 29.97 3.60
386 387 5.580297 TGACGAAAAACTACCACTTTACGTT 59.420 36.000 0.00 0.00 29.97 3.99
387 388 5.005682 GTGACGAAAAACTACCACTTTACGT 59.994 40.000 0.00 0.00 31.36 3.57
388 389 5.426240 GTGACGAAAAACTACCACTTTACG 58.574 41.667 0.00 0.00 0.00 3.18
389 390 5.005682 ACGTGACGAAAAACTACCACTTTAC 59.994 40.000 13.70 0.00 0.00 2.01
390 391 5.108517 ACGTGACGAAAAACTACCACTTTA 58.891 37.500 13.70 0.00 0.00 1.85
391 392 3.934579 ACGTGACGAAAAACTACCACTTT 59.065 39.130 13.70 0.00 0.00 2.66
392 393 3.524541 ACGTGACGAAAAACTACCACTT 58.475 40.909 13.70 0.00 0.00 3.16
393 394 3.169355 ACGTGACGAAAAACTACCACT 57.831 42.857 13.70 0.00 0.00 4.00
394 395 3.931285 AACGTGACGAAAAACTACCAC 57.069 42.857 13.70 0.00 0.00 4.16
395 396 3.309410 GGAAACGTGACGAAAAACTACCA 59.691 43.478 13.70 0.00 0.00 3.25
396 397 3.865329 GGAAACGTGACGAAAAACTACC 58.135 45.455 13.70 0.00 0.00 3.18
412 413 4.823790 AACTACCACAATTGACGGAAAC 57.176 40.909 20.70 0.00 0.00 2.78
413 414 5.838531 AAAACTACCACAATTGACGGAAA 57.161 34.783 20.70 10.29 0.00 3.13
414 415 5.450688 CCAAAAACTACCACAATTGACGGAA 60.451 40.000 20.70 0.31 0.00 4.30
415 416 4.036971 CCAAAAACTACCACAATTGACGGA 59.963 41.667 20.70 3.96 0.00 4.69
416 417 4.202070 ACCAAAAACTACCACAATTGACGG 60.202 41.667 13.59 14.19 0.00 4.79
417 418 4.927422 ACCAAAAACTACCACAATTGACG 58.073 39.130 13.59 3.68 0.00 4.35
418 419 8.705048 TTTAACCAAAAACTACCACAATTGAC 57.295 30.769 13.59 0.00 0.00 3.18
423 424 8.344098 CGAGTATTTAACCAAAAACTACCACAA 58.656 33.333 0.00 0.00 0.00 3.33
424 425 7.041235 CCGAGTATTTAACCAAAAACTACCACA 60.041 37.037 0.00 0.00 0.00 4.17
425 426 7.300320 CCGAGTATTTAACCAAAAACTACCAC 58.700 38.462 0.00 0.00 0.00 4.16
426 427 6.072563 GCCGAGTATTTAACCAAAAACTACCA 60.073 38.462 0.00 0.00 0.00 3.25
427 428 6.317088 GCCGAGTATTTAACCAAAAACTACC 58.683 40.000 0.00 0.00 0.00 3.18
428 429 6.072563 TGGCCGAGTATTTAACCAAAAACTAC 60.073 38.462 0.00 0.00 0.00 2.73
429 430 6.002704 TGGCCGAGTATTTAACCAAAAACTA 58.997 36.000 0.00 0.00 0.00 2.24
430 431 4.828387 TGGCCGAGTATTTAACCAAAAACT 59.172 37.500 0.00 0.00 0.00 2.66
431 432 5.123805 TGGCCGAGTATTTAACCAAAAAC 57.876 39.130 0.00 0.00 0.00 2.43
432 433 4.828387 ACTGGCCGAGTATTTAACCAAAAA 59.172 37.500 0.00 0.00 30.86 1.94
433 434 4.216687 CACTGGCCGAGTATTTAACCAAAA 59.783 41.667 7.41 0.00 31.73 2.44
434 435 3.754323 CACTGGCCGAGTATTTAACCAAA 59.246 43.478 7.41 0.00 31.73 3.28
435 436 3.340034 CACTGGCCGAGTATTTAACCAA 58.660 45.455 7.41 0.00 31.73 3.67
436 437 2.355310 CCACTGGCCGAGTATTTAACCA 60.355 50.000 7.41 0.00 31.73 3.67
437 438 2.285977 CCACTGGCCGAGTATTTAACC 58.714 52.381 7.41 0.00 31.73 2.85
438 439 1.669265 GCCACTGGCCGAGTATTTAAC 59.331 52.381 9.13 0.00 44.06 2.01
439 440 2.032680 GCCACTGGCCGAGTATTTAA 57.967 50.000 9.13 0.00 44.06 1.52
440 441 3.772619 GCCACTGGCCGAGTATTTA 57.227 52.632 9.13 0.00 44.06 1.40
441 442 4.637771 GCCACTGGCCGAGTATTT 57.362 55.556 9.13 0.00 44.06 1.40
451 452 0.549950 AGGGATCAATCAGCCACTGG 59.450 55.000 0.00 0.00 31.51 4.00
452 453 2.426024 CAAAGGGATCAATCAGCCACTG 59.574 50.000 0.00 0.00 0.00 3.66
453 454 2.042162 ACAAAGGGATCAATCAGCCACT 59.958 45.455 0.00 0.00 0.00 4.00
454 455 2.450476 ACAAAGGGATCAATCAGCCAC 58.550 47.619 0.00 0.00 0.00 5.01
506 507 4.487412 CCGGTACAGGTCGGTCGC 62.487 72.222 3.54 0.00 41.23 5.19
508 509 0.179119 CATTCCGGTACAGGTCGGTC 60.179 60.000 12.04 0.00 45.79 4.79
509 510 0.901580 ACATTCCGGTACAGGTCGGT 60.902 55.000 12.04 5.79 45.79 4.69
510 511 0.459585 CACATTCCGGTACAGGTCGG 60.460 60.000 12.04 6.94 46.89 4.79
549 550 1.685517 TGCTTCTCATCTCTCATCCCG 59.314 52.381 0.00 0.00 0.00 5.14
594 595 2.092211 CGATGGAGTGTAAAGACGCAAC 59.908 50.000 0.00 0.00 38.63 4.17
601 602 2.915463 GTGTCGACGATGGAGTGTAAAG 59.085 50.000 11.62 0.00 0.00 1.85
603 604 1.200716 GGTGTCGACGATGGAGTGTAA 59.799 52.381 11.62 0.00 0.00 2.41
604 605 0.806868 GGTGTCGACGATGGAGTGTA 59.193 55.000 11.62 0.00 0.00 2.90
610 611 1.083806 CATGTGGGTGTCGACGATGG 61.084 60.000 11.62 0.00 0.00 3.51
620 621 4.682334 TGGCTGGGCATGTGGGTG 62.682 66.667 0.00 0.00 0.00 4.61
633 634 1.078567 GCTAGCTGCTCAACTGGCT 60.079 57.895 4.91 0.00 37.41 4.75
634 635 2.459442 CGCTAGCTGCTCAACTGGC 61.459 63.158 13.93 1.75 40.11 4.85
674 675 7.243091 ACTAATTTACACCCAATTACCCACTT 58.757 34.615 0.00 0.00 0.00 3.16
778 908 0.320771 AGACAAGTAGGGCAGCGTTG 60.321 55.000 0.00 0.00 0.00 4.10
802 937 3.012959 AGATTAGGAGAAGGTGGTGGAGA 59.987 47.826 0.00 0.00 0.00 3.71
803 938 3.379452 AGATTAGGAGAAGGTGGTGGAG 58.621 50.000 0.00 0.00 0.00 3.86
804 939 3.491766 AGATTAGGAGAAGGTGGTGGA 57.508 47.619 0.00 0.00 0.00 4.02
805 940 3.777522 AGAAGATTAGGAGAAGGTGGTGG 59.222 47.826 0.00 0.00 0.00 4.61
806 941 5.423886 GAAGAAGATTAGGAGAAGGTGGTG 58.576 45.833 0.00 0.00 0.00 4.17
869 1015 3.519913 GCCTGGTATTTATAGAGGGAGGG 59.480 52.174 0.00 0.00 0.00 4.30
870 1016 3.519913 GGCCTGGTATTTATAGAGGGAGG 59.480 52.174 0.00 0.00 0.00 4.30
890 1037 2.564721 GGTGCAGGTTGAGGTTGGC 61.565 63.158 0.00 0.00 0.00 4.52
962 1122 1.303799 TAGCGACGACGGAGCTTCTT 61.304 55.000 21.03 3.72 41.88 2.52
976 1136 2.519771 TGTTCCTACTTCCCTAGCGA 57.480 50.000 0.00 0.00 0.00 4.93
980 1140 4.081309 CCATCGTTTGTTCCTACTTCCCTA 60.081 45.833 0.00 0.00 0.00 3.53
981 1141 3.307480 CCATCGTTTGTTCCTACTTCCCT 60.307 47.826 0.00 0.00 0.00 4.20
982 1142 3.007635 CCATCGTTTGTTCCTACTTCCC 58.992 50.000 0.00 0.00 0.00 3.97
983 1143 2.418976 GCCATCGTTTGTTCCTACTTCC 59.581 50.000 0.00 0.00 0.00 3.46
984 1144 3.125316 CAGCCATCGTTTGTTCCTACTTC 59.875 47.826 0.00 0.00 0.00 3.01
985 1145 3.074412 CAGCCATCGTTTGTTCCTACTT 58.926 45.455 0.00 0.00 0.00 2.24
986 1146 2.699954 CAGCCATCGTTTGTTCCTACT 58.300 47.619 0.00 0.00 0.00 2.57
987 1147 1.130561 GCAGCCATCGTTTGTTCCTAC 59.869 52.381 0.00 0.00 0.00 3.18
1019 1179 2.906897 CACCACCACCAGCACCAC 60.907 66.667 0.00 0.00 0.00 4.16
1245 1405 3.072468 CGGGACTGGGCCTCGTAA 61.072 66.667 4.53 0.00 0.00 3.18
1323 1483 6.036517 GGGAATGAAATGAATATCGAGATCGG 59.963 42.308 1.91 0.00 40.29 4.18
1326 1486 7.332926 CGAAGGGAATGAAATGAATATCGAGAT 59.667 37.037 0.00 0.00 0.00 2.75
1327 1487 6.646653 CGAAGGGAATGAAATGAATATCGAGA 59.353 38.462 0.00 0.00 0.00 4.04
1329 1489 5.179368 GCGAAGGGAATGAAATGAATATCGA 59.821 40.000 0.00 0.00 0.00 3.59
1331 1491 5.474876 AGGCGAAGGGAATGAAATGAATATC 59.525 40.000 0.00 0.00 0.00 1.63
1332 1492 5.388654 AGGCGAAGGGAATGAAATGAATAT 58.611 37.500 0.00 0.00 0.00 1.28
1333 1493 4.792068 AGGCGAAGGGAATGAAATGAATA 58.208 39.130 0.00 0.00 0.00 1.75
1334 1494 3.633986 GAGGCGAAGGGAATGAAATGAAT 59.366 43.478 0.00 0.00 0.00 2.57
1335 1495 3.016736 GAGGCGAAGGGAATGAAATGAA 58.983 45.455 0.00 0.00 0.00 2.57
1341 1519 1.048724 ATCGGAGGCGAAGGGAATGA 61.049 55.000 0.00 0.00 0.00 2.57
1345 1523 2.043349 TGATCGGAGGCGAAGGGA 60.043 61.111 0.00 0.00 0.00 4.20
1346 1524 2.107141 GTGATCGGAGGCGAAGGG 59.893 66.667 0.00 0.00 0.00 3.95
1347 1525 1.066587 GAGTGATCGGAGGCGAAGG 59.933 63.158 0.00 0.00 0.00 3.46
1352 1530 2.851071 CGAGGGAGTGATCGGAGGC 61.851 68.421 0.00 0.00 35.33 4.70
1353 1531 1.448922 GACGAGGGAGTGATCGGAGG 61.449 65.000 0.00 0.00 43.12 4.30
1354 1532 0.464735 AGACGAGGGAGTGATCGGAG 60.465 60.000 0.00 0.00 43.12 4.63
1355 1533 0.034380 AAGACGAGGGAGTGATCGGA 60.034 55.000 0.00 0.00 43.12 4.55
1389 1567 2.114625 CCATGGCGGCCAGATGAT 59.885 61.111 27.62 7.09 36.75 2.45
1390 1568 3.089217 TCCATGGCGGCCAGATGA 61.089 61.111 27.62 19.08 36.75 2.92
1391 1569 2.903855 GTCCATGGCGGCCAGATG 60.904 66.667 27.62 20.51 36.75 2.90
1392 1570 4.552365 CGTCCATGGCGGCCAGAT 62.552 66.667 27.62 8.78 36.75 2.90
1420 1605 2.851824 CGACCTGCAACAAACAAGAAAC 59.148 45.455 0.00 0.00 0.00 2.78
1493 1683 4.767255 GCGAGGTGGTGCTCTGGG 62.767 72.222 0.00 0.00 0.00 4.45
1530 1720 3.872603 TCCTGCAACCACGGCTGT 61.873 61.111 0.00 0.00 0.00 4.40
1531 1721 3.357079 GTCCTGCAACCACGGCTG 61.357 66.667 0.00 0.00 0.00 4.85
1533 1723 3.660111 GTGTCCTGCAACCACGGC 61.660 66.667 0.00 0.00 0.00 5.68
1534 1724 2.978010 GGTGTCCTGCAACCACGG 60.978 66.667 0.21 0.00 0.00 4.94
1535 1725 2.203139 TGGTGTCCTGCAACCACG 60.203 61.111 3.79 0.00 32.70 4.94
1536 1726 2.555547 GCTGGTGTCCTGCAACCAC 61.556 63.158 3.79 2.98 45.75 4.16
1537 1727 2.203337 GCTGGTGTCCTGCAACCA 60.203 61.111 7.73 7.73 45.75 3.67
1542 1732 3.503363 GCGATGCTGGTGTCCTGC 61.503 66.667 10.03 10.03 46.46 4.85
1543 1733 2.821366 GGCGATGCTGGTGTCCTG 60.821 66.667 0.00 0.00 0.00 3.86
1544 1734 4.457496 CGGCGATGCTGGTGTCCT 62.457 66.667 0.00 0.00 0.00 3.85
1608 1801 4.012811 AGCTCTGGCAGAAGCGCA 62.013 61.111 23.83 0.99 43.41 6.09
1626 1819 1.729838 GGATACGTCGCCGCTCATC 60.730 63.158 0.00 0.00 37.70 2.92
1630 1823 2.027605 CATGGATACGTCGCCGCT 59.972 61.111 0.00 0.00 42.51 5.52
1632 1825 2.027605 AGCATGGATACGTCGCCG 59.972 61.111 0.00 0.00 42.51 6.46
1635 1828 1.825285 GCTGCAGCATGGATACGTCG 61.825 60.000 33.36 0.00 34.26 5.12
1719 1912 2.842256 GCTTCGCATCATGGCCTGG 61.842 63.158 3.32 0.00 0.00 4.45
1760 1953 9.958180 TGGTTTTATCATGATGTTCTTCTTCTA 57.042 29.630 18.72 0.00 0.00 2.10
1761 1954 8.868522 TGGTTTTATCATGATGTTCTTCTTCT 57.131 30.769 18.72 0.00 0.00 2.85
1762 1955 9.512435 CATGGTTTTATCATGATGTTCTTCTTC 57.488 33.333 18.72 0.40 43.25 2.87
1763 1956 7.977853 GCATGGTTTTATCATGATGTTCTTCTT 59.022 33.333 18.72 0.00 43.25 2.52
1771 1964 7.492994 TGTGAAATGCATGGTTTTATCATGATG 59.507 33.333 18.72 1.25 43.25 3.07
1794 1993 1.069022 CGAGGTTGTTGGAAGCATGTG 60.069 52.381 0.00 0.00 0.00 3.21
1795 1994 1.238439 CGAGGTTGTTGGAAGCATGT 58.762 50.000 0.00 0.00 0.00 3.21
1814 2013 2.546368 AGCACTCTGATAGATCGTCGAC 59.454 50.000 5.18 5.18 0.00 4.20
1864 2063 3.882888 AGTTCTTCTAGCTCGATCTCTGG 59.117 47.826 0.00 0.00 0.00 3.86
1866 2065 4.776349 TGAGTTCTTCTAGCTCGATCTCT 58.224 43.478 0.00 0.00 38.23 3.10
1867 2066 4.024048 CCTGAGTTCTTCTAGCTCGATCTC 60.024 50.000 0.00 0.00 38.23 2.75
1886 2086 5.039645 AGGTTAATCAATTCCCTCTCCTGA 58.960 41.667 0.00 0.00 0.00 3.86
2051 2257 7.282901 TGATCTTGCAACATATAAGCTGCTTAA 59.717 33.333 24.34 14.49 35.78 1.85
2052 2258 6.767423 TGATCTTGCAACATATAAGCTGCTTA 59.233 34.615 23.00 23.00 35.78 3.09
2066 2272 2.614057 CGATAAGGGGTGATCTTGCAAC 59.386 50.000 0.00 0.00 0.00 4.17
2098 2304 8.358895 TGATGTCATTATCAAGACTTGCAAAAA 58.641 29.630 10.50 2.66 34.32 1.94
2133 2339 8.942338 TCGCTTACTCTGAACATACATATTTT 57.058 30.769 0.00 0.00 0.00 1.82
2134 2357 9.547753 AATCGCTTACTCTGAACATACATATTT 57.452 29.630 0.00 0.00 0.00 1.40
2143 2366 5.168569 CAACCTAATCGCTTACTCTGAACA 58.831 41.667 0.00 0.00 0.00 3.18
2144 2367 4.033014 GCAACCTAATCGCTTACTCTGAAC 59.967 45.833 0.00 0.00 0.00 3.18
2145 2368 4.181578 GCAACCTAATCGCTTACTCTGAA 58.818 43.478 0.00 0.00 0.00 3.02
2240 2512 5.337330 CGGTAGAGTTTTGGTTCATCCTACT 60.337 44.000 0.00 0.00 37.07 2.57
2270 2542 2.505650 TAAGCATACAAAGGGCAGCA 57.494 45.000 0.00 0.00 0.00 4.41
2274 2546 6.701400 CCAATACAAATAAGCATACAAAGGGC 59.299 38.462 0.00 0.00 0.00 5.19
2284 2556 8.474025 CCAAACTATTCCCAATACAAATAAGCA 58.526 33.333 0.00 0.00 0.00 3.91
2295 2567 7.797121 ATCAAACTTCCAAACTATTCCCAAT 57.203 32.000 0.00 0.00 0.00 3.16
2300 2572 7.816640 TGCACTATCAAACTTCCAAACTATTC 58.183 34.615 0.00 0.00 0.00 1.75
2309 2581 3.620488 TGGGATGCACTATCAAACTTCC 58.380 45.455 0.00 0.00 37.54 3.46
2338 2615 9.965824 TTGTATTCATTTTTCAAACTCTTCCTC 57.034 29.630 0.00 0.00 0.00 3.71
2385 2663 4.708909 TCAGACAGCTGAGATACAACAGAT 59.291 41.667 23.35 0.00 45.88 2.90
2429 2719 0.310854 AAACTTGCGCCGAAAAGAGG 59.689 50.000 11.71 0.00 0.00 3.69
2525 2819 4.976224 TGTGCGCTATAGTAACTCTTCA 57.024 40.909 9.73 0.00 0.00 3.02
2629 2927 8.578151 GCAGCCTATGAGTTTATACTACTAAGT 58.422 37.037 0.00 0.00 39.91 2.24
2630 2928 8.798402 AGCAGCCTATGAGTTTATACTACTAAG 58.202 37.037 0.00 0.00 33.84 2.18
2631 2929 8.577296 CAGCAGCCTATGAGTTTATACTACTAA 58.423 37.037 0.00 0.00 33.84 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.