Multiple sequence alignment - TraesCS6B01G438600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G438600 chr6B 100.000 3398 0 0 1 3398 704742659 704746056 0.000000e+00 6276
1 TraesCS6B01G438600 chr2A 98.724 2821 35 1 579 3398 2768049 2765229 0.000000e+00 5009
2 TraesCS6B01G438600 chr2A 97.910 2823 53 3 579 3398 734935070 734932251 0.000000e+00 4881
3 TraesCS6B01G438600 chr2A 87.403 1802 140 42 1661 3398 38527852 38526074 0.000000e+00 1989
4 TraesCS6B01G438600 chr5A 98.091 2829 42 5 579 3398 44279440 44276615 0.000000e+00 4915
5 TraesCS6B01G438600 chrUn 97.881 2831 47 6 578 3398 8808796 8805969 0.000000e+00 4883
6 TraesCS6B01G438600 chr7A 97.913 2827 46 6 579 3396 13133456 13130634 0.000000e+00 4881
7 TraesCS6B01G438600 chr7A 97.738 2829 52 5 579 3398 707670450 707673275 0.000000e+00 4859
8 TraesCS6B01G438600 chr7B 97.702 2829 50 8 579 3398 714452956 714450134 0.000000e+00 4850
9 TraesCS6B01G438600 chr3B 97.632 2829 49 6 579 3398 60270841 60273660 0.000000e+00 4837
10 TraesCS6B01G438600 chr4B 97.166 2823 47 9 579 3398 621762622 621759830 0.000000e+00 4739
11 TraesCS6B01G438600 chr6A 92.893 197 11 3 377 573 609108426 609108233 2.000000e-72 283
12 TraesCS6B01G438600 chr6D 96.094 128 4 1 378 505 462273792 462273666 1.240000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G438600 chr6B 704742659 704746056 3397 False 6276 6276 100.000 1 3398 1 chr6B.!!$F1 3397
1 TraesCS6B01G438600 chr2A 2765229 2768049 2820 True 5009 5009 98.724 579 3398 1 chr2A.!!$R1 2819
2 TraesCS6B01G438600 chr2A 734932251 734935070 2819 True 4881 4881 97.910 579 3398 1 chr2A.!!$R3 2819
3 TraesCS6B01G438600 chr2A 38526074 38527852 1778 True 1989 1989 87.403 1661 3398 1 chr2A.!!$R2 1737
4 TraesCS6B01G438600 chr5A 44276615 44279440 2825 True 4915 4915 98.091 579 3398 1 chr5A.!!$R1 2819
5 TraesCS6B01G438600 chrUn 8805969 8808796 2827 True 4883 4883 97.881 578 3398 1 chrUn.!!$R1 2820
6 TraesCS6B01G438600 chr7A 13130634 13133456 2822 True 4881 4881 97.913 579 3396 1 chr7A.!!$R1 2817
7 TraesCS6B01G438600 chr7A 707670450 707673275 2825 False 4859 4859 97.738 579 3398 1 chr7A.!!$F1 2819
8 TraesCS6B01G438600 chr7B 714450134 714452956 2822 True 4850 4850 97.702 579 3398 1 chr7B.!!$R1 2819
9 TraesCS6B01G438600 chr3B 60270841 60273660 2819 False 4837 4837 97.632 579 3398 1 chr3B.!!$F1 2819
10 TraesCS6B01G438600 chr4B 621759830 621762622 2792 True 4739 4739 97.166 579 3398 1 chr4B.!!$R1 2819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 440 0.030504 TCGTCGACCGTGCAAACTAA 59.969 50.0 10.58 0.00 37.94 2.24 F
451 452 0.109319 CAAACTAAAGCGCGGCCATT 60.109 50.0 8.83 1.57 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 1961 2.507407 TGTCCCAAATCCTGGTTAGC 57.493 50.00 0.0 0.0 44.76 3.09 R
2470 2523 8.865090 ACATGAAACTTTCCCAAAATATACACA 58.135 29.63 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.052229 CTGAACGAGACCGCCGGT 62.052 66.667 9.43 9.43 39.44 5.28
35 36 4.143333 CCGCCGGTCGACTCCAAT 62.143 66.667 16.46 0.00 41.67 3.16
36 37 2.885644 CGCCGGTCGACTCCAATG 60.886 66.667 16.46 0.00 41.67 2.82
37 38 3.195698 GCCGGTCGACTCCAATGC 61.196 66.667 16.46 5.72 0.00 3.56
38 39 2.579201 CCGGTCGACTCCAATGCT 59.421 61.111 16.46 0.00 0.00 3.79
39 40 1.811266 CCGGTCGACTCCAATGCTG 60.811 63.158 16.46 0.00 0.00 4.41
40 41 2.456119 CGGTCGACTCCAATGCTGC 61.456 63.158 16.46 0.00 0.00 5.25
41 42 1.078848 GGTCGACTCCAATGCTGCT 60.079 57.895 16.46 0.00 0.00 4.24
42 43 0.175760 GGTCGACTCCAATGCTGCTA 59.824 55.000 16.46 0.00 0.00 3.49
43 44 1.281899 GTCGACTCCAATGCTGCTAC 58.718 55.000 8.70 0.00 0.00 3.58
44 45 1.134965 GTCGACTCCAATGCTGCTACT 60.135 52.381 8.70 0.00 0.00 2.57
45 46 2.099263 GTCGACTCCAATGCTGCTACTA 59.901 50.000 8.70 0.00 0.00 1.82
46 47 2.099263 TCGACTCCAATGCTGCTACTAC 59.901 50.000 0.00 0.00 0.00 2.73
47 48 2.099921 CGACTCCAATGCTGCTACTACT 59.900 50.000 0.00 0.00 0.00 2.57
48 49 3.315470 CGACTCCAATGCTGCTACTACTA 59.685 47.826 0.00 0.00 0.00 1.82
49 50 4.612943 GACTCCAATGCTGCTACTACTAC 58.387 47.826 0.00 0.00 0.00 2.73
50 51 4.023980 ACTCCAATGCTGCTACTACTACA 58.976 43.478 0.00 0.00 0.00 2.74
51 52 4.466370 ACTCCAATGCTGCTACTACTACAA 59.534 41.667 0.00 0.00 0.00 2.41
52 53 5.046591 ACTCCAATGCTGCTACTACTACAAA 60.047 40.000 0.00 0.00 0.00 2.83
53 54 5.989477 TCCAATGCTGCTACTACTACAAAT 58.011 37.500 0.00 0.00 0.00 2.32
54 55 5.817296 TCCAATGCTGCTACTACTACAAATG 59.183 40.000 0.00 0.00 0.00 2.32
55 56 5.586243 CCAATGCTGCTACTACTACAAATGT 59.414 40.000 0.00 0.00 0.00 2.71
56 57 6.238211 CCAATGCTGCTACTACTACAAATGTC 60.238 42.308 0.00 0.00 0.00 3.06
57 58 5.400066 TGCTGCTACTACTACAAATGTCA 57.600 39.130 0.00 0.00 0.00 3.58
58 59 5.977635 TGCTGCTACTACTACAAATGTCAT 58.022 37.500 0.00 0.00 0.00 3.06
59 60 5.812127 TGCTGCTACTACTACAAATGTCATG 59.188 40.000 0.00 0.00 0.00 3.07
60 61 5.235186 GCTGCTACTACTACAAATGTCATGG 59.765 44.000 0.00 0.00 0.00 3.66
61 62 5.116180 TGCTACTACTACAAATGTCATGGC 58.884 41.667 0.00 0.00 0.00 4.40
62 63 4.511826 GCTACTACTACAAATGTCATGGCC 59.488 45.833 0.00 0.00 0.00 5.36
63 64 4.844349 ACTACTACAAATGTCATGGCCT 57.156 40.909 3.32 0.00 0.00 5.19
64 65 4.517285 ACTACTACAAATGTCATGGCCTG 58.483 43.478 3.32 0.00 0.00 4.85
65 66 2.094675 ACTACAAATGTCATGGCCTGC 58.905 47.619 3.32 0.00 0.00 4.85
66 67 2.093890 CTACAAATGTCATGGCCTGCA 58.906 47.619 3.32 3.33 0.00 4.41
67 68 1.563924 ACAAATGTCATGGCCTGCAT 58.436 45.000 3.32 5.46 0.00 3.96
68 69 2.737544 ACAAATGTCATGGCCTGCATA 58.262 42.857 3.32 0.00 0.00 3.14
69 70 2.428171 ACAAATGTCATGGCCTGCATAC 59.572 45.455 3.32 0.00 0.00 2.39
70 71 1.311859 AATGTCATGGCCTGCATACG 58.688 50.000 3.32 0.00 0.00 3.06
71 72 1.168407 ATGTCATGGCCTGCATACGC 61.168 55.000 3.32 0.00 39.24 4.42
72 73 2.588596 TCATGGCCTGCATACGCG 60.589 61.111 3.53 3.53 42.97 6.01
73 74 3.653009 CATGGCCTGCATACGCGG 61.653 66.667 12.47 0.00 44.78 6.46
74 75 4.175337 ATGGCCTGCATACGCGGT 62.175 61.111 12.47 0.00 43.56 5.68
78 79 2.106131 CCTGCATACGCGGTGCTA 59.894 61.111 29.82 19.13 43.56 3.49
79 80 1.300931 CCTGCATACGCGGTGCTAT 60.301 57.895 29.82 10.17 43.56 2.97
80 81 0.880278 CCTGCATACGCGGTGCTATT 60.880 55.000 29.82 4.47 43.56 1.73
81 82 0.937304 CTGCATACGCGGTGCTATTT 59.063 50.000 29.82 3.76 42.92 1.40
82 83 1.330521 CTGCATACGCGGTGCTATTTT 59.669 47.619 29.82 3.06 42.92 1.82
83 84 1.740585 TGCATACGCGGTGCTATTTTT 59.259 42.857 29.82 2.35 42.92 1.94
84 85 2.223157 TGCATACGCGGTGCTATTTTTC 60.223 45.455 29.82 8.06 42.92 2.29
85 86 2.223157 GCATACGCGGTGCTATTTTTCA 60.223 45.455 25.26 0.00 39.45 2.69
86 87 3.350912 CATACGCGGTGCTATTTTTCAC 58.649 45.455 12.47 0.00 0.00 3.18
87 88 1.519408 ACGCGGTGCTATTTTTCACT 58.481 45.000 12.47 0.00 33.91 3.41
88 89 1.463444 ACGCGGTGCTATTTTTCACTC 59.537 47.619 12.47 0.00 33.91 3.51
89 90 1.732259 CGCGGTGCTATTTTTCACTCT 59.268 47.619 0.00 0.00 33.91 3.24
90 91 2.222819 CGCGGTGCTATTTTTCACTCTC 60.223 50.000 0.00 0.00 33.91 3.20
91 92 3.003480 GCGGTGCTATTTTTCACTCTCT 58.997 45.455 0.00 0.00 33.91 3.10
92 93 3.062774 GCGGTGCTATTTTTCACTCTCTC 59.937 47.826 0.00 0.00 33.91 3.20
93 94 3.304559 CGGTGCTATTTTTCACTCTCTCG 59.695 47.826 0.00 0.00 33.91 4.04
94 95 3.062774 GGTGCTATTTTTCACTCTCTCGC 59.937 47.826 0.00 0.00 33.91 5.03
95 96 3.062774 GTGCTATTTTTCACTCTCTCGCC 59.937 47.826 0.00 0.00 0.00 5.54
96 97 2.609916 GCTATTTTTCACTCTCTCGCCC 59.390 50.000 0.00 0.00 0.00 6.13
97 98 3.680196 GCTATTTTTCACTCTCTCGCCCT 60.680 47.826 0.00 0.00 0.00 5.19
98 99 2.457366 TTTTTCACTCTCTCGCCCTC 57.543 50.000 0.00 0.00 0.00 4.30
99 100 0.243907 TTTTCACTCTCTCGCCCTCG 59.756 55.000 0.00 0.00 0.00 4.63
100 101 0.608308 TTTCACTCTCTCGCCCTCGA 60.608 55.000 0.00 0.00 43.28 4.04
101 102 0.394488 TTCACTCTCTCGCCCTCGAT 60.394 55.000 0.00 0.00 44.56 3.59
102 103 0.468648 TCACTCTCTCGCCCTCGATA 59.531 55.000 0.00 0.00 44.56 2.92
103 104 1.072489 TCACTCTCTCGCCCTCGATAT 59.928 52.381 0.00 0.00 44.56 1.63
104 105 1.883275 CACTCTCTCGCCCTCGATATT 59.117 52.381 0.00 0.00 44.56 1.28
105 106 2.294791 CACTCTCTCGCCCTCGATATTT 59.705 50.000 0.00 0.00 44.56 1.40
106 107 3.502595 CACTCTCTCGCCCTCGATATTTA 59.497 47.826 0.00 0.00 44.56 1.40
107 108 4.023107 CACTCTCTCGCCCTCGATATTTAA 60.023 45.833 0.00 0.00 44.56 1.52
108 109 4.583489 ACTCTCTCGCCCTCGATATTTAAA 59.417 41.667 0.00 0.00 44.56 1.52
109 110 5.068723 ACTCTCTCGCCCTCGATATTTAAAA 59.931 40.000 0.00 0.00 44.56 1.52
110 111 5.909477 TCTCTCGCCCTCGATATTTAAAAA 58.091 37.500 0.00 0.00 44.56 1.94
111 112 5.751990 TCTCTCGCCCTCGATATTTAAAAAC 59.248 40.000 0.00 0.00 44.56 2.43
112 113 5.421277 TCTCGCCCTCGATATTTAAAAACA 58.579 37.500 0.00 0.00 44.56 2.83
113 114 5.292589 TCTCGCCCTCGATATTTAAAAACAC 59.707 40.000 0.00 0.00 44.56 3.32
114 115 5.180271 TCGCCCTCGATATTTAAAAACACT 58.820 37.500 0.00 0.00 40.21 3.55
115 116 5.644636 TCGCCCTCGATATTTAAAAACACTT 59.355 36.000 0.00 0.00 40.21 3.16
116 117 6.149807 TCGCCCTCGATATTTAAAAACACTTT 59.850 34.615 0.00 0.00 40.21 2.66
117 118 6.250527 CGCCCTCGATATTTAAAAACACTTTG 59.749 38.462 0.00 0.00 38.10 2.77
118 119 6.530181 GCCCTCGATATTTAAAAACACTTTGG 59.470 38.462 0.00 0.00 0.00 3.28
119 120 6.530181 CCCTCGATATTTAAAAACACTTTGGC 59.470 38.462 0.00 0.00 0.00 4.52
120 121 6.250527 CCTCGATATTTAAAAACACTTTGGCG 59.749 38.462 0.00 0.00 0.00 5.69
121 122 5.569823 TCGATATTTAAAAACACTTTGGCGC 59.430 36.000 0.00 0.00 0.00 6.53
122 123 5.343593 CGATATTTAAAAACACTTTGGCGCA 59.656 36.000 10.83 0.00 0.00 6.09
123 124 6.452350 CGATATTTAAAAACACTTTGGCGCAG 60.452 38.462 10.83 0.00 0.00 5.18
124 125 3.512033 TTAAAAACACTTTGGCGCAGT 57.488 38.095 10.83 0.09 0.00 4.40
125 126 2.378445 AAAAACACTTTGGCGCAGTT 57.622 40.000 10.83 0.51 0.00 3.16
126 127 3.512033 AAAAACACTTTGGCGCAGTTA 57.488 38.095 10.83 0.00 0.00 2.24
127 128 3.512033 AAAACACTTTGGCGCAGTTAA 57.488 38.095 10.83 0.00 0.00 2.01
128 129 3.512033 AAACACTTTGGCGCAGTTAAA 57.488 38.095 10.83 3.96 0.00 1.52
129 130 3.512033 AACACTTTGGCGCAGTTAAAA 57.488 38.095 10.83 0.43 0.00 1.52
130 131 3.512033 ACACTTTGGCGCAGTTAAAAA 57.488 38.095 10.83 0.00 0.00 1.94
151 152 4.861102 AAAAAGAAGCATCTCCACCTTG 57.139 40.909 0.00 0.00 33.77 3.61
152 153 2.503895 AAGAAGCATCTCCACCTTGG 57.496 50.000 0.00 0.00 39.43 3.61
153 154 0.034670 AGAAGCATCTCCACCTTGGC 60.035 55.000 0.00 0.00 37.47 4.52
154 155 0.322816 GAAGCATCTCCACCTTGGCA 60.323 55.000 0.00 0.00 37.47 4.92
155 156 0.610232 AAGCATCTCCACCTTGGCAC 60.610 55.000 0.00 0.00 37.47 5.01
156 157 2.401766 GCATCTCCACCTTGGCACG 61.402 63.158 0.00 0.00 37.47 5.34
157 158 1.746615 CATCTCCACCTTGGCACGG 60.747 63.158 8.71 8.71 37.47 4.94
158 159 3.628646 ATCTCCACCTTGGCACGGC 62.629 63.158 10.35 0.00 37.47 5.68
159 160 4.335647 CTCCACCTTGGCACGGCT 62.336 66.667 10.35 0.00 37.47 5.52
160 161 2.925706 TCCACCTTGGCACGGCTA 60.926 61.111 10.35 0.00 37.47 3.93
161 162 2.436646 CCACCTTGGCACGGCTAG 60.437 66.667 10.35 0.36 0.00 3.42
162 163 2.347490 CACCTTGGCACGGCTAGT 59.653 61.111 10.35 0.00 0.00 2.57
163 164 1.594833 CACCTTGGCACGGCTAGTA 59.405 57.895 10.35 0.00 0.00 1.82
164 165 0.460284 CACCTTGGCACGGCTAGTAG 60.460 60.000 10.35 0.00 0.00 2.57
165 166 0.613853 ACCTTGGCACGGCTAGTAGA 60.614 55.000 10.35 0.00 0.00 2.59
166 167 0.535335 CCTTGGCACGGCTAGTAGAA 59.465 55.000 0.00 0.00 0.00 2.10
167 168 1.471676 CCTTGGCACGGCTAGTAGAAG 60.472 57.143 0.00 0.00 0.00 2.85
168 169 1.204941 CTTGGCACGGCTAGTAGAAGT 59.795 52.381 0.00 0.00 0.00 3.01
169 170 1.263356 TGGCACGGCTAGTAGAAGTT 58.737 50.000 0.00 0.00 0.00 2.66
170 171 2.449464 TGGCACGGCTAGTAGAAGTTA 58.551 47.619 0.00 0.00 0.00 2.24
171 172 2.827322 TGGCACGGCTAGTAGAAGTTAA 59.173 45.455 0.00 0.00 0.00 2.01
172 173 3.449737 TGGCACGGCTAGTAGAAGTTAAT 59.550 43.478 0.00 0.00 0.00 1.40
173 174 4.646040 TGGCACGGCTAGTAGAAGTTAATA 59.354 41.667 0.00 0.00 0.00 0.98
174 175 5.303589 TGGCACGGCTAGTAGAAGTTAATAT 59.696 40.000 0.00 0.00 0.00 1.28
175 176 6.183360 TGGCACGGCTAGTAGAAGTTAATATT 60.183 38.462 0.00 0.00 0.00 1.28
176 177 6.704937 GGCACGGCTAGTAGAAGTTAATATTT 59.295 38.462 0.00 0.00 0.00 1.40
177 178 7.095732 GGCACGGCTAGTAGAAGTTAATATTTC 60.096 40.741 0.00 0.00 0.00 2.17
178 179 7.095732 GCACGGCTAGTAGAAGTTAATATTTCC 60.096 40.741 0.00 0.00 0.00 3.13
179 180 7.384387 CACGGCTAGTAGAAGTTAATATTTCCC 59.616 40.741 0.00 0.00 0.00 3.97
180 181 7.289549 ACGGCTAGTAGAAGTTAATATTTCCCT 59.710 37.037 0.00 0.00 0.00 4.20
181 182 8.800332 CGGCTAGTAGAAGTTAATATTTCCCTA 58.200 37.037 0.00 0.00 0.00 3.53
212 213 7.978975 AGAAGAAGTTAATATCAGTCTCACTGC 59.021 37.037 0.00 0.00 45.54 4.40
213 214 7.416964 AGAAGTTAATATCAGTCTCACTGCT 57.583 36.000 0.00 0.00 45.54 4.24
214 215 7.846066 AGAAGTTAATATCAGTCTCACTGCTT 58.154 34.615 0.00 0.00 45.54 3.91
215 216 8.317679 AGAAGTTAATATCAGTCTCACTGCTTT 58.682 33.333 0.00 0.00 45.54 3.51
216 217 8.854614 AAGTTAATATCAGTCTCACTGCTTTT 57.145 30.769 0.00 0.00 45.54 2.27
217 218 8.854614 AGTTAATATCAGTCTCACTGCTTTTT 57.145 30.769 0.00 0.00 45.54 1.94
218 219 8.940952 AGTTAATATCAGTCTCACTGCTTTTTC 58.059 33.333 0.00 0.00 45.54 2.29
219 220 8.940952 GTTAATATCAGTCTCACTGCTTTTTCT 58.059 33.333 0.00 0.00 45.54 2.52
220 221 7.992754 AATATCAGTCTCACTGCTTTTTCTT 57.007 32.000 0.00 0.00 45.54 2.52
221 222 7.992754 ATATCAGTCTCACTGCTTTTTCTTT 57.007 32.000 0.00 0.00 45.54 2.52
222 223 5.741388 TCAGTCTCACTGCTTTTTCTTTC 57.259 39.130 0.00 0.00 45.54 2.62
223 224 5.431765 TCAGTCTCACTGCTTTTTCTTTCT 58.568 37.500 0.00 0.00 45.54 2.52
224 225 6.582636 TCAGTCTCACTGCTTTTTCTTTCTA 58.417 36.000 0.00 0.00 45.54 2.10
225 226 7.220030 TCAGTCTCACTGCTTTTTCTTTCTAT 58.780 34.615 0.00 0.00 45.54 1.98
226 227 7.716998 TCAGTCTCACTGCTTTTTCTTTCTATT 59.283 33.333 0.00 0.00 45.54 1.73
227 228 8.993121 CAGTCTCACTGCTTTTTCTTTCTATTA 58.007 33.333 0.00 0.00 39.62 0.98
228 229 9.732130 AGTCTCACTGCTTTTTCTTTCTATTAT 57.268 29.630 0.00 0.00 0.00 1.28
261 262 3.828875 TTTTGTTTTTGCGGGGAATCT 57.171 38.095 0.00 0.00 0.00 2.40
262 263 4.939052 TTTTGTTTTTGCGGGGAATCTA 57.061 36.364 0.00 0.00 0.00 1.98
263 264 5.476091 TTTTGTTTTTGCGGGGAATCTAT 57.524 34.783 0.00 0.00 0.00 1.98
264 265 5.476091 TTTGTTTTTGCGGGGAATCTATT 57.524 34.783 0.00 0.00 0.00 1.73
265 266 6.591750 TTTGTTTTTGCGGGGAATCTATTA 57.408 33.333 0.00 0.00 0.00 0.98
266 267 6.783708 TTGTTTTTGCGGGGAATCTATTAT 57.216 33.333 0.00 0.00 0.00 1.28
267 268 7.883391 TTGTTTTTGCGGGGAATCTATTATA 57.117 32.000 0.00 0.00 0.00 0.98
268 269 7.883391 TGTTTTTGCGGGGAATCTATTATAA 57.117 32.000 0.00 0.00 0.00 0.98
269 270 8.472007 TGTTTTTGCGGGGAATCTATTATAAT 57.528 30.769 2.97 2.97 0.00 1.28
270 271 9.575868 TGTTTTTGCGGGGAATCTATTATAATA 57.424 29.630 5.10 5.10 0.00 0.98
276 277 9.429109 TGCGGGGAATCTATTATAATATACTGA 57.571 33.333 5.64 0.85 0.00 3.41
298 299 8.090214 ACTGATTGGAAGAAAAATATGTTGTGG 58.910 33.333 0.00 0.00 0.00 4.17
299 300 8.187913 TGATTGGAAGAAAAATATGTTGTGGA 57.812 30.769 0.00 0.00 0.00 4.02
300 301 8.087750 TGATTGGAAGAAAAATATGTTGTGGAC 58.912 33.333 0.00 0.00 0.00 4.02
301 302 6.968263 TGGAAGAAAAATATGTTGTGGACA 57.032 33.333 0.00 0.00 43.71 4.02
302 303 6.980593 TGGAAGAAAAATATGTTGTGGACAG 58.019 36.000 0.00 0.00 42.62 3.51
303 304 6.549364 TGGAAGAAAAATATGTTGTGGACAGT 59.451 34.615 0.00 0.00 42.62 3.55
304 305 6.863126 GGAAGAAAAATATGTTGTGGACAGTG 59.137 38.462 0.00 0.00 42.62 3.66
305 306 6.331369 AGAAAAATATGTTGTGGACAGTGG 57.669 37.500 0.00 0.00 42.62 4.00
306 307 5.243730 AGAAAAATATGTTGTGGACAGTGGG 59.756 40.000 0.00 0.00 42.62 4.61
307 308 4.380843 AAATATGTTGTGGACAGTGGGA 57.619 40.909 0.00 0.00 42.62 4.37
308 309 3.634397 ATATGTTGTGGACAGTGGGAG 57.366 47.619 0.00 0.00 42.62 4.30
309 310 0.401738 ATGTTGTGGACAGTGGGAGG 59.598 55.000 0.00 0.00 42.62 4.30
310 311 1.073199 GTTGTGGACAGTGGGAGGG 59.927 63.158 0.00 0.00 0.00 4.30
311 312 2.153401 TTGTGGACAGTGGGAGGGG 61.153 63.158 0.00 0.00 0.00 4.79
312 313 2.203938 GTGGACAGTGGGAGGGGA 60.204 66.667 0.00 0.00 0.00 4.81
313 314 2.122729 TGGACAGTGGGAGGGGAG 59.877 66.667 0.00 0.00 0.00 4.30
314 315 2.689034 GGACAGTGGGAGGGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
315 316 2.122954 GACAGTGGGAGGGGAGGT 59.877 66.667 0.00 0.00 0.00 3.85
316 317 2.203998 ACAGTGGGAGGGGAGGTG 60.204 66.667 0.00 0.00 0.00 4.00
317 318 3.721706 CAGTGGGAGGGGAGGTGC 61.722 72.222 0.00 0.00 0.00 5.01
323 324 3.017581 GAGGGGAGGTGCCACCAT 61.018 66.667 17.80 0.54 43.05 3.55
324 325 2.535317 AGGGGAGGTGCCACCATT 60.535 61.111 17.80 0.00 43.05 3.16
325 326 2.362889 GGGGAGGTGCCACCATTG 60.363 66.667 17.80 0.00 41.95 2.82
326 327 2.440599 GGGAGGTGCCACCATTGT 59.559 61.111 17.80 0.00 41.95 2.71
327 328 1.688811 GGGAGGTGCCACCATTGTA 59.311 57.895 17.80 0.00 41.95 2.41
328 329 0.394352 GGGAGGTGCCACCATTGTAG 60.394 60.000 17.80 0.00 41.95 2.74
329 330 0.328258 GGAGGTGCCACCATTGTAGT 59.672 55.000 17.80 0.00 41.95 2.73
330 331 1.557832 GGAGGTGCCACCATTGTAGTA 59.442 52.381 17.80 0.00 41.95 1.82
331 332 2.172717 GGAGGTGCCACCATTGTAGTAT 59.827 50.000 17.80 0.00 41.95 2.12
332 333 3.467803 GAGGTGCCACCATTGTAGTATC 58.532 50.000 17.80 0.00 41.95 2.24
333 334 3.115390 AGGTGCCACCATTGTAGTATCT 58.885 45.455 17.80 0.00 41.95 1.98
334 335 4.295201 AGGTGCCACCATTGTAGTATCTA 58.705 43.478 17.80 0.00 41.95 1.98
335 336 4.907875 AGGTGCCACCATTGTAGTATCTAT 59.092 41.667 17.80 0.00 41.95 1.98
336 337 4.997395 GGTGCCACCATTGTAGTATCTATG 59.003 45.833 9.55 0.00 38.42 2.23
337 338 4.452455 GTGCCACCATTGTAGTATCTATGC 59.548 45.833 0.00 0.00 0.00 3.14
338 339 4.003648 GCCACCATTGTAGTATCTATGCC 58.996 47.826 0.00 0.00 0.00 4.40
339 340 4.245660 CCACCATTGTAGTATCTATGCCG 58.754 47.826 0.00 0.00 0.00 5.69
340 341 4.245660 CACCATTGTAGTATCTATGCCGG 58.754 47.826 0.00 0.00 0.00 6.13
341 342 3.262420 CCATTGTAGTATCTATGCCGGC 58.738 50.000 22.73 22.73 0.00 6.13
342 343 3.262420 CATTGTAGTATCTATGCCGGCC 58.738 50.000 26.77 6.18 0.00 6.13
343 344 1.263356 TGTAGTATCTATGCCGGCCC 58.737 55.000 26.77 0.00 0.00 5.80
344 345 1.263356 GTAGTATCTATGCCGGCCCA 58.737 55.000 26.77 10.82 0.00 5.36
345 346 1.831736 GTAGTATCTATGCCGGCCCAT 59.168 52.381 26.77 14.81 0.00 4.00
346 347 1.362224 AGTATCTATGCCGGCCCATT 58.638 50.000 26.77 8.84 0.00 3.16
347 348 1.003580 AGTATCTATGCCGGCCCATTG 59.996 52.381 26.77 12.94 0.00 2.82
348 349 1.003118 GTATCTATGCCGGCCCATTGA 59.997 52.381 26.77 18.09 32.95 2.57
349 350 0.478072 ATCTATGCCGGCCCATTGAA 59.522 50.000 26.77 2.60 32.36 2.69
350 351 0.257328 TCTATGCCGGCCCATTGAAA 59.743 50.000 26.77 1.65 0.00 2.69
351 352 1.110442 CTATGCCGGCCCATTGAAAA 58.890 50.000 26.77 0.73 0.00 2.29
352 353 1.480137 CTATGCCGGCCCATTGAAAAA 59.520 47.619 26.77 0.00 0.00 1.94
384 385 1.934589 AAAAAGAAGTTTGCACGGCC 58.065 45.000 0.00 0.00 0.00 6.13
385 386 0.248866 AAAAGAAGTTTGCACGGCCG 60.249 50.000 26.86 26.86 0.00 6.13
386 387 2.070654 AAAGAAGTTTGCACGGCCGG 62.071 55.000 31.76 19.49 0.00 6.13
387 388 2.951475 AAGAAGTTTGCACGGCCGGA 62.951 55.000 31.76 10.23 0.00 5.14
388 389 2.282180 AAGTTTGCACGGCCGGAT 60.282 55.556 31.76 6.18 0.00 4.18
389 390 1.003112 AAGTTTGCACGGCCGGATA 60.003 52.632 31.76 12.07 0.00 2.59
390 391 0.606944 AAGTTTGCACGGCCGGATAA 60.607 50.000 31.76 17.70 0.00 1.75
391 392 0.606944 AGTTTGCACGGCCGGATAAA 60.607 50.000 31.76 22.37 0.00 1.40
392 393 0.454196 GTTTGCACGGCCGGATAAAT 59.546 50.000 31.76 3.35 0.00 1.40
393 394 0.736053 TTTGCACGGCCGGATAAATC 59.264 50.000 31.76 10.09 0.00 2.17
394 395 1.098712 TTGCACGGCCGGATAAATCC 61.099 55.000 31.76 8.28 43.65 3.01
404 405 2.568623 GGATAAATCCACGGAGGCAT 57.431 50.000 4.04 0.00 46.38 4.40
405 406 2.154462 GGATAAATCCACGGAGGCATG 58.846 52.381 4.04 0.00 46.38 4.06
406 407 2.154462 GATAAATCCACGGAGGCATGG 58.846 52.381 0.00 0.00 37.29 3.66
409 410 3.739922 TCCACGGAGGCATGGATT 58.260 55.556 0.00 0.00 40.17 3.01
410 411 1.526887 TCCACGGAGGCATGGATTC 59.473 57.895 0.00 0.00 40.17 2.52
411 412 1.224315 CCACGGAGGCATGGATTCA 59.776 57.895 0.00 0.00 38.34 2.57
412 413 0.816825 CCACGGAGGCATGGATTCAG 60.817 60.000 0.00 0.00 38.34 3.02
413 414 0.816825 CACGGAGGCATGGATTCAGG 60.817 60.000 0.00 0.00 0.00 3.86
414 415 1.274703 ACGGAGGCATGGATTCAGGT 61.275 55.000 0.00 0.00 0.00 4.00
415 416 0.816825 CGGAGGCATGGATTCAGGTG 60.817 60.000 0.00 0.00 0.00 4.00
416 417 0.466922 GGAGGCATGGATTCAGGTGG 60.467 60.000 0.00 0.00 0.00 4.61
417 418 1.076485 AGGCATGGATTCAGGTGGC 60.076 57.895 0.00 0.00 37.40 5.01
418 419 2.484062 GGCATGGATTCAGGTGGCG 61.484 63.158 0.00 0.00 0.00 5.69
419 420 2.484062 GCATGGATTCAGGTGGCGG 61.484 63.158 0.00 0.00 0.00 6.13
420 421 1.077501 CATGGATTCAGGTGGCGGT 60.078 57.895 0.00 0.00 0.00 5.68
421 422 1.097547 CATGGATTCAGGTGGCGGTC 61.098 60.000 0.00 0.00 0.00 4.79
422 423 2.511600 GGATTCAGGTGGCGGTCG 60.512 66.667 0.00 0.00 0.00 4.79
423 424 2.264794 GATTCAGGTGGCGGTCGT 59.735 61.111 0.00 0.00 0.00 4.34
424 425 1.810030 GATTCAGGTGGCGGTCGTC 60.810 63.158 0.00 0.00 0.00 4.20
425 426 3.642778 ATTCAGGTGGCGGTCGTCG 62.643 63.158 0.00 0.00 42.76 5.12
435 436 2.659244 GGTCGTCGACCGTGCAAA 60.659 61.111 27.59 0.00 43.14 3.68
436 437 2.542896 GTCGTCGACCGTGCAAAC 59.457 61.111 14.60 0.00 37.94 2.93
437 438 1.947642 GTCGTCGACCGTGCAAACT 60.948 57.895 14.60 0.00 37.94 2.66
438 439 0.661187 GTCGTCGACCGTGCAAACTA 60.661 55.000 14.60 0.00 37.94 2.24
439 440 0.030504 TCGTCGACCGTGCAAACTAA 59.969 50.000 10.58 0.00 37.94 2.24
440 441 0.854062 CGTCGACCGTGCAAACTAAA 59.146 50.000 10.58 0.00 0.00 1.85
441 442 1.136721 CGTCGACCGTGCAAACTAAAG 60.137 52.381 10.58 0.00 0.00 1.85
442 443 0.863144 TCGACCGTGCAAACTAAAGC 59.137 50.000 0.00 0.00 0.00 3.51
443 444 0.450482 CGACCGTGCAAACTAAAGCG 60.450 55.000 0.00 0.00 0.00 4.68
444 445 0.724785 GACCGTGCAAACTAAAGCGC 60.725 55.000 0.00 0.00 37.87 5.92
446 447 4.130857 GTGCAAACTAAAGCGCGG 57.869 55.556 8.83 0.00 0.00 6.46
447 448 2.080636 GTGCAAACTAAAGCGCGGC 61.081 57.895 8.83 0.00 0.00 6.53
448 449 2.504026 GCAAACTAAAGCGCGGCC 60.504 61.111 8.83 0.00 0.00 6.13
449 450 2.950673 CAAACTAAAGCGCGGCCA 59.049 55.556 8.83 0.00 0.00 5.36
450 451 1.506262 CAAACTAAAGCGCGGCCAT 59.494 52.632 8.83 0.00 0.00 4.40
451 452 0.109319 CAAACTAAAGCGCGGCCATT 60.109 50.000 8.83 1.57 0.00 3.16
452 453 0.170339 AAACTAAAGCGCGGCCATTC 59.830 50.000 8.83 0.00 0.00 2.67
453 454 1.977594 AACTAAAGCGCGGCCATTCG 61.978 55.000 8.83 3.83 0.00 3.34
454 455 3.168237 CTAAAGCGCGGCCATTCGG 62.168 63.158 8.83 0.00 0.00 4.30
464 465 2.412937 CCATTCGGCGGGAAATGC 59.587 61.111 7.21 0.00 38.36 3.56
465 466 2.120909 CCATTCGGCGGGAAATGCT 61.121 57.895 7.21 0.00 38.36 3.79
466 467 1.666209 CCATTCGGCGGGAAATGCTT 61.666 55.000 7.21 0.00 38.36 3.91
467 468 0.173255 CATTCGGCGGGAAATGCTTT 59.827 50.000 7.21 0.00 38.36 3.51
468 469 0.455815 ATTCGGCGGGAAATGCTTTC 59.544 50.000 7.21 0.00 38.36 2.62
469 470 0.608035 TTCGGCGGGAAATGCTTTCT 60.608 50.000 7.21 0.00 39.59 2.52
470 471 0.608035 TCGGCGGGAAATGCTTTCTT 60.608 50.000 7.21 0.00 39.59 2.52
471 472 0.243636 CGGCGGGAAATGCTTTCTTT 59.756 50.000 0.00 0.00 39.59 2.52
472 473 1.470890 CGGCGGGAAATGCTTTCTTTA 59.529 47.619 0.00 0.00 39.59 1.85
473 474 2.099098 CGGCGGGAAATGCTTTCTTTAT 59.901 45.455 0.00 0.00 39.59 1.40
474 475 3.706698 GGCGGGAAATGCTTTCTTTATC 58.293 45.455 8.05 0.00 39.59 1.75
475 476 3.490933 GGCGGGAAATGCTTTCTTTATCC 60.491 47.826 8.05 1.39 39.59 2.59
476 477 3.130340 GCGGGAAATGCTTTCTTTATCCA 59.870 43.478 8.05 0.00 39.59 3.41
477 478 4.202151 GCGGGAAATGCTTTCTTTATCCAT 60.202 41.667 8.05 0.00 39.59 3.41
478 479 5.009610 GCGGGAAATGCTTTCTTTATCCATA 59.990 40.000 8.05 0.00 39.59 2.74
479 480 6.294731 GCGGGAAATGCTTTCTTTATCCATAT 60.295 38.462 8.05 0.00 39.59 1.78
480 481 7.086376 CGGGAAATGCTTTCTTTATCCATATG 58.914 38.462 0.00 0.00 39.59 1.78
481 482 7.255590 CGGGAAATGCTTTCTTTATCCATATGT 60.256 37.037 1.24 0.00 39.59 2.29
482 483 8.084684 GGGAAATGCTTTCTTTATCCATATGTC 58.915 37.037 1.24 0.00 39.59 3.06
483 484 8.854117 GGAAATGCTTTCTTTATCCATATGTCT 58.146 33.333 1.24 0.00 39.59 3.41
487 488 8.327941 TGCTTTCTTTATCCATATGTCTATGC 57.672 34.615 1.24 0.00 34.54 3.14
488 489 7.391554 TGCTTTCTTTATCCATATGTCTATGCC 59.608 37.037 1.24 0.00 34.54 4.40
489 490 7.148171 GCTTTCTTTATCCATATGTCTATGCCC 60.148 40.741 1.24 0.00 34.54 5.36
490 491 6.950860 TCTTTATCCATATGTCTATGCCCA 57.049 37.500 1.24 0.00 34.54 5.36
491 492 6.950842 TCTTTATCCATATGTCTATGCCCAG 58.049 40.000 1.24 0.00 34.54 4.45
492 493 3.641434 ATCCATATGTCTATGCCCAGC 57.359 47.619 1.24 0.00 34.54 4.85
493 494 1.630369 TCCATATGTCTATGCCCAGCC 59.370 52.381 1.24 0.00 34.54 4.85
494 495 1.352017 CCATATGTCTATGCCCAGCCA 59.648 52.381 1.24 0.00 34.54 4.75
495 496 2.617276 CCATATGTCTATGCCCAGCCAG 60.617 54.545 1.24 0.00 34.54 4.85
496 497 1.806496 TATGTCTATGCCCAGCCAGT 58.194 50.000 0.00 0.00 0.00 4.00
497 498 0.182061 ATGTCTATGCCCAGCCAGTG 59.818 55.000 0.00 0.00 0.00 3.66
498 499 1.821332 GTCTATGCCCAGCCAGTGC 60.821 63.158 0.00 0.00 37.95 4.40
499 500 2.273123 CTATGCCCAGCCAGTGCA 59.727 61.111 0.00 0.00 41.13 4.57
500 501 2.045045 TATGCCCAGCCAGTGCAC 60.045 61.111 9.40 9.40 41.13 4.57
501 502 3.974835 TATGCCCAGCCAGTGCACG 62.975 63.158 12.01 6.45 41.13 5.34
503 504 4.697756 GCCCAGCCAGTGCACGTA 62.698 66.667 12.01 0.00 41.13 3.57
504 505 2.742372 CCCAGCCAGTGCACGTAC 60.742 66.667 12.01 4.49 41.13 3.67
505 506 3.112075 CCAGCCAGTGCACGTACG 61.112 66.667 15.01 15.01 41.13 3.67
506 507 2.355837 CAGCCAGTGCACGTACGT 60.356 61.111 16.72 16.72 41.13 3.57
507 508 1.081041 CAGCCAGTGCACGTACGTA 60.081 57.895 22.34 3.16 41.13 3.57
508 509 1.080974 AGCCAGTGCACGTACGTAC 60.081 57.895 22.34 16.78 41.13 3.67
509 510 2.791396 AGCCAGTGCACGTACGTACG 62.791 60.000 38.49 38.49 44.72 3.67
517 518 2.796207 CGTACGTACGTGCGCACA 60.796 61.111 37.87 18.84 45.72 4.57
518 519 2.758840 GTACGTACGTGCGCACAC 59.241 61.111 37.03 27.35 43.76 3.82
526 527 2.588877 GTGCGCACACACTCACCT 60.589 61.111 34.52 0.00 46.61 4.00
527 528 2.588596 TGCGCACACACTCACCTG 60.589 61.111 5.66 0.00 0.00 4.00
528 529 2.588877 GCGCACACACTCACCTGT 60.589 61.111 0.30 0.00 0.00 4.00
529 530 2.180204 GCGCACACACTCACCTGTT 61.180 57.895 0.30 0.00 0.00 3.16
530 531 1.714899 GCGCACACACTCACCTGTTT 61.715 55.000 0.30 0.00 0.00 2.83
531 532 0.732571 CGCACACACTCACCTGTTTT 59.267 50.000 0.00 0.00 0.00 2.43
532 533 1.132262 CGCACACACTCACCTGTTTTT 59.868 47.619 0.00 0.00 0.00 1.94
556 557 7.481275 TTTTCTCAATTCATTTTTCAGGTGC 57.519 32.000 0.00 0.00 0.00 5.01
557 558 5.787953 TCTCAATTCATTTTTCAGGTGCA 57.212 34.783 0.00 0.00 0.00 4.57
558 559 5.775686 TCTCAATTCATTTTTCAGGTGCAG 58.224 37.500 0.00 0.00 0.00 4.41
559 560 5.302568 TCTCAATTCATTTTTCAGGTGCAGT 59.697 36.000 0.00 0.00 0.00 4.40
560 561 5.291178 TCAATTCATTTTTCAGGTGCAGTG 58.709 37.500 0.00 0.00 0.00 3.66
561 562 4.942761 ATTCATTTTTCAGGTGCAGTGT 57.057 36.364 0.00 0.00 0.00 3.55
562 563 4.734398 TTCATTTTTCAGGTGCAGTGTT 57.266 36.364 0.00 0.00 0.00 3.32
563 564 4.044336 TCATTTTTCAGGTGCAGTGTTG 57.956 40.909 0.00 0.00 0.00 3.33
564 565 3.698539 TCATTTTTCAGGTGCAGTGTTGA 59.301 39.130 0.00 0.00 0.00 3.18
565 566 3.502191 TTTTTCAGGTGCAGTGTTGAC 57.498 42.857 0.00 0.00 0.00 3.18
566 567 1.388547 TTTCAGGTGCAGTGTTGACC 58.611 50.000 0.00 0.00 0.00 4.02
567 568 0.254462 TTCAGGTGCAGTGTTGACCA 59.746 50.000 9.82 0.00 31.12 4.02
568 569 0.179048 TCAGGTGCAGTGTTGACCAG 60.179 55.000 9.82 3.48 31.12 4.00
569 570 1.149174 AGGTGCAGTGTTGACCAGG 59.851 57.895 9.82 0.00 31.12 4.45
570 571 2.555547 GGTGCAGTGTTGACCAGGC 61.556 63.158 0.00 0.00 0.00 4.85
571 572 2.203337 TGCAGTGTTGACCAGGCC 60.203 61.111 0.00 0.00 0.00 5.19
572 573 2.203337 GCAGTGTTGACCAGGCCA 60.203 61.111 5.01 0.00 0.00 5.36
573 574 2.263741 GCAGTGTTGACCAGGCCAG 61.264 63.158 5.01 0.00 0.00 4.85
574 575 1.149174 CAGTGTTGACCAGGCCAGT 59.851 57.895 5.01 0.38 0.00 4.00
575 576 1.149174 AGTGTTGACCAGGCCAGTG 59.851 57.895 5.01 0.00 0.00 3.66
576 577 1.898574 GTGTTGACCAGGCCAGTGG 60.899 63.158 5.01 7.67 44.01 4.00
713 715 0.388006 TCGTGAAATCGCTCGCTTCA 60.388 50.000 3.60 3.60 0.00 3.02
1158 1160 6.917217 ATTTGCTTTTGGTTTGATTCGAAA 57.083 29.167 0.00 0.00 0.00 3.46
1228 1230 5.070446 TGTGGTTCTTACACTGAATCTGAGT 59.930 40.000 0.00 0.00 39.52 3.41
1914 1961 3.274288 GCCAGAGATTCTACAAAGGTGG 58.726 50.000 0.00 0.00 0.00 4.61
2340 2387 6.705381 AGTATCTTATTGCTGATCTGCTCAAC 59.295 38.462 23.02 10.96 32.14 3.18
2470 2523 4.202182 GCCTTGGAATGTCATGCATGTTAT 60.202 41.667 25.43 17.38 37.96 1.89
3076 3186 2.016704 CTTGCTTCACGACGACGCT 61.017 57.895 7.30 0.00 43.96 5.07
3230 3340 1.057514 CTCGTCGTCAGAGTCGTCG 59.942 63.158 0.00 0.00 39.95 5.12
3265 3387 0.592148 GACTCGTCGTCAGTGGACTT 59.408 55.000 0.00 0.00 42.05 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.488957 GTCTCGTTCAGCGCTTGTG 59.511 57.895 7.50 0.00 41.07 3.33
2 3 2.720758 CGGTCTCGTTCAGCGCTTG 61.721 63.158 7.50 3.43 41.07 4.01
3 4 2.430921 CGGTCTCGTTCAGCGCTT 60.431 61.111 7.50 0.00 41.07 4.68
8 9 4.052229 ACCGGCGGTCTCGTTCAG 62.052 66.667 28.83 0.00 38.89 3.02
18 19 4.143333 ATTGGAGTCGACCGGCGG 62.143 66.667 27.06 27.06 41.33 6.13
19 20 2.885644 CATTGGAGTCGACCGGCG 60.886 66.667 13.01 6.66 42.69 6.46
20 21 3.195698 GCATTGGAGTCGACCGGC 61.196 66.667 13.01 1.73 0.00 6.13
21 22 1.811266 CAGCATTGGAGTCGACCGG 60.811 63.158 13.01 0.00 0.00 5.28
22 23 2.456119 GCAGCATTGGAGTCGACCG 61.456 63.158 13.01 0.00 0.00 4.79
23 24 0.175760 TAGCAGCATTGGAGTCGACC 59.824 55.000 13.01 3.55 0.00 4.79
24 25 1.134965 AGTAGCAGCATTGGAGTCGAC 60.135 52.381 7.70 7.70 0.00 4.20
25 26 1.186200 AGTAGCAGCATTGGAGTCGA 58.814 50.000 0.00 0.00 0.00 4.20
26 27 2.099921 AGTAGTAGCAGCATTGGAGTCG 59.900 50.000 0.00 0.00 0.00 4.18
27 28 3.810310 AGTAGTAGCAGCATTGGAGTC 57.190 47.619 0.00 0.00 0.00 3.36
28 29 4.023980 TGTAGTAGTAGCAGCATTGGAGT 58.976 43.478 0.00 0.00 0.00 3.85
29 30 4.655762 TGTAGTAGTAGCAGCATTGGAG 57.344 45.455 0.00 0.00 0.00 3.86
30 31 5.414789 TTTGTAGTAGTAGCAGCATTGGA 57.585 39.130 0.00 0.00 0.00 3.53
31 32 5.586243 ACATTTGTAGTAGTAGCAGCATTGG 59.414 40.000 0.00 0.00 0.00 3.16
32 33 6.313658 TGACATTTGTAGTAGTAGCAGCATTG 59.686 38.462 0.00 0.00 0.00 2.82
33 34 6.406370 TGACATTTGTAGTAGTAGCAGCATT 58.594 36.000 0.00 0.00 0.00 3.56
34 35 5.977635 TGACATTTGTAGTAGTAGCAGCAT 58.022 37.500 0.00 0.00 0.00 3.79
35 36 5.400066 TGACATTTGTAGTAGTAGCAGCA 57.600 39.130 0.00 0.00 0.00 4.41
36 37 5.235186 CCATGACATTTGTAGTAGTAGCAGC 59.765 44.000 0.00 0.00 0.00 5.25
37 38 5.235186 GCCATGACATTTGTAGTAGTAGCAG 59.765 44.000 0.00 0.00 0.00 4.24
38 39 5.116180 GCCATGACATTTGTAGTAGTAGCA 58.884 41.667 0.00 0.00 0.00 3.49
39 40 4.511826 GGCCATGACATTTGTAGTAGTAGC 59.488 45.833 0.00 0.00 0.00 3.58
40 41 5.755375 CAGGCCATGACATTTGTAGTAGTAG 59.245 44.000 5.01 0.00 0.00 2.57
41 42 5.670485 CAGGCCATGACATTTGTAGTAGTA 58.330 41.667 5.01 0.00 0.00 1.82
42 43 4.517285 CAGGCCATGACATTTGTAGTAGT 58.483 43.478 5.01 0.00 0.00 2.73
43 44 3.313526 GCAGGCCATGACATTTGTAGTAG 59.686 47.826 5.01 0.00 0.00 2.57
44 45 3.278574 GCAGGCCATGACATTTGTAGTA 58.721 45.455 5.01 0.00 0.00 1.82
45 46 2.094675 GCAGGCCATGACATTTGTAGT 58.905 47.619 5.01 0.00 0.00 2.73
46 47 2.093890 TGCAGGCCATGACATTTGTAG 58.906 47.619 5.01 0.00 0.00 2.74
47 48 2.212812 TGCAGGCCATGACATTTGTA 57.787 45.000 5.01 0.00 0.00 2.41
48 49 1.563924 ATGCAGGCCATGACATTTGT 58.436 45.000 5.01 0.00 31.48 2.83
49 50 2.542205 CGTATGCAGGCCATGACATTTG 60.542 50.000 5.01 0.00 35.34 2.32
50 51 1.677576 CGTATGCAGGCCATGACATTT 59.322 47.619 5.01 0.00 35.34 2.32
51 52 1.311859 CGTATGCAGGCCATGACATT 58.688 50.000 5.01 0.00 35.34 2.71
52 53 1.168407 GCGTATGCAGGCCATGACAT 61.168 55.000 5.01 10.56 42.15 3.06
53 54 1.819208 GCGTATGCAGGCCATGACA 60.819 57.895 5.01 3.86 42.15 3.58
54 55 2.885676 CGCGTATGCAGGCCATGAC 61.886 63.158 5.01 0.00 42.97 3.06
55 56 2.588596 CGCGTATGCAGGCCATGA 60.589 61.111 5.01 0.00 42.97 3.07
56 57 3.653009 CCGCGTATGCAGGCCATG 61.653 66.667 5.01 0.97 42.97 3.66
57 58 4.175337 ACCGCGTATGCAGGCCAT 62.175 61.111 5.01 0.00 42.97 4.40
61 62 0.880278 AATAGCACCGCGTATGCAGG 60.880 55.000 27.84 11.46 45.92 4.85
62 63 0.937304 AAATAGCACCGCGTATGCAG 59.063 50.000 27.84 5.85 45.92 4.41
63 64 1.374560 AAAATAGCACCGCGTATGCA 58.625 45.000 27.84 17.10 45.92 3.96
64 65 2.223157 TGAAAAATAGCACCGCGTATGC 60.223 45.455 21.33 21.33 43.74 3.14
65 66 3.063452 AGTGAAAAATAGCACCGCGTATG 59.937 43.478 4.92 4.01 35.67 2.39
66 67 3.267483 AGTGAAAAATAGCACCGCGTAT 58.733 40.909 4.92 0.00 35.67 3.06
67 68 2.669434 GAGTGAAAAATAGCACCGCGTA 59.331 45.455 4.92 0.00 35.67 4.42
68 69 1.463444 GAGTGAAAAATAGCACCGCGT 59.537 47.619 4.92 0.00 35.67 6.01
69 70 1.732259 AGAGTGAAAAATAGCACCGCG 59.268 47.619 0.00 0.00 35.67 6.46
70 71 3.003480 AGAGAGTGAAAAATAGCACCGC 58.997 45.455 0.00 0.00 35.67 5.68
71 72 3.304559 CGAGAGAGTGAAAAATAGCACCG 59.695 47.826 0.00 0.00 35.67 4.94
72 73 3.062774 GCGAGAGAGTGAAAAATAGCACC 59.937 47.826 0.00 0.00 35.67 5.01
73 74 3.062774 GGCGAGAGAGTGAAAAATAGCAC 59.937 47.826 0.00 0.00 35.30 4.40
74 75 3.262420 GGCGAGAGAGTGAAAAATAGCA 58.738 45.455 0.00 0.00 0.00 3.49
75 76 2.609916 GGGCGAGAGAGTGAAAAATAGC 59.390 50.000 0.00 0.00 0.00 2.97
76 77 4.116238 GAGGGCGAGAGAGTGAAAAATAG 58.884 47.826 0.00 0.00 0.00 1.73
77 78 3.428999 CGAGGGCGAGAGAGTGAAAAATA 60.429 47.826 0.00 0.00 40.82 1.40
78 79 2.675317 CGAGGGCGAGAGAGTGAAAAAT 60.675 50.000 0.00 0.00 40.82 1.82
79 80 1.336887 CGAGGGCGAGAGAGTGAAAAA 60.337 52.381 0.00 0.00 40.82 1.94
80 81 0.243907 CGAGGGCGAGAGAGTGAAAA 59.756 55.000 0.00 0.00 40.82 2.29
81 82 0.608308 TCGAGGGCGAGAGAGTGAAA 60.608 55.000 0.00 0.00 42.51 2.69
82 83 1.002502 TCGAGGGCGAGAGAGTGAA 60.003 57.895 0.00 0.00 42.51 3.18
83 84 2.669240 TCGAGGGCGAGAGAGTGA 59.331 61.111 0.00 0.00 42.51 3.41
92 93 5.479716 AGTGTTTTTAAATATCGAGGGCG 57.520 39.130 0.00 0.00 39.35 6.13
93 94 6.530181 CCAAAGTGTTTTTAAATATCGAGGGC 59.470 38.462 0.00 0.00 0.00 5.19
94 95 6.530181 GCCAAAGTGTTTTTAAATATCGAGGG 59.470 38.462 0.00 0.00 0.00 4.30
95 96 6.250527 CGCCAAAGTGTTTTTAAATATCGAGG 59.749 38.462 0.00 0.00 0.00 4.63
96 97 6.237201 GCGCCAAAGTGTTTTTAAATATCGAG 60.237 38.462 0.00 0.00 0.00 4.04
97 98 5.569823 GCGCCAAAGTGTTTTTAAATATCGA 59.430 36.000 0.00 0.00 0.00 3.59
98 99 5.343593 TGCGCCAAAGTGTTTTTAAATATCG 59.656 36.000 4.18 0.00 0.00 2.92
99 100 6.364976 ACTGCGCCAAAGTGTTTTTAAATATC 59.635 34.615 4.18 0.00 0.00 1.63
100 101 6.220201 ACTGCGCCAAAGTGTTTTTAAATAT 58.780 32.000 4.18 0.00 0.00 1.28
101 102 5.593010 ACTGCGCCAAAGTGTTTTTAAATA 58.407 33.333 4.18 0.00 0.00 1.40
102 103 4.438148 ACTGCGCCAAAGTGTTTTTAAAT 58.562 34.783 4.18 0.00 0.00 1.40
103 104 3.851098 ACTGCGCCAAAGTGTTTTTAAA 58.149 36.364 4.18 0.00 0.00 1.52
104 105 3.512033 ACTGCGCCAAAGTGTTTTTAA 57.488 38.095 4.18 0.00 0.00 1.52
105 106 3.512033 AACTGCGCCAAAGTGTTTTTA 57.488 38.095 4.18 0.00 0.00 1.52
106 107 2.378445 AACTGCGCCAAAGTGTTTTT 57.622 40.000 4.18 0.00 0.00 1.94
107 108 3.512033 TTAACTGCGCCAAAGTGTTTT 57.488 38.095 4.18 0.00 0.00 2.43
108 109 3.512033 TTTAACTGCGCCAAAGTGTTT 57.488 38.095 4.18 0.00 0.00 2.83
109 110 3.512033 TTTTAACTGCGCCAAAGTGTT 57.488 38.095 4.18 3.22 0.00 3.32
110 111 3.512033 TTTTTAACTGCGCCAAAGTGT 57.488 38.095 4.18 0.00 0.00 3.55
130 131 3.575687 CCAAGGTGGAGATGCTTCTTTTT 59.424 43.478 3.29 0.00 40.96 1.94
131 132 3.160269 CCAAGGTGGAGATGCTTCTTTT 58.840 45.455 3.29 0.00 40.96 2.27
132 133 2.800250 CCAAGGTGGAGATGCTTCTTT 58.200 47.619 3.29 0.00 40.96 2.52
133 134 1.615384 GCCAAGGTGGAGATGCTTCTT 60.615 52.381 3.29 0.00 40.96 2.52
134 135 0.034670 GCCAAGGTGGAGATGCTTCT 60.035 55.000 0.96 0.96 40.96 2.85
135 136 0.322816 TGCCAAGGTGGAGATGCTTC 60.323 55.000 0.00 0.00 40.96 3.86
136 137 0.610232 GTGCCAAGGTGGAGATGCTT 60.610 55.000 0.00 0.00 40.96 3.91
137 138 1.001641 GTGCCAAGGTGGAGATGCT 60.002 57.895 0.00 0.00 40.96 3.79
138 139 2.401766 CGTGCCAAGGTGGAGATGC 61.402 63.158 0.00 0.00 40.96 3.91
139 140 1.746615 CCGTGCCAAGGTGGAGATG 60.747 63.158 0.00 0.00 40.96 2.90
140 141 2.671070 CCGTGCCAAGGTGGAGAT 59.329 61.111 0.00 0.00 40.96 2.75
141 142 4.329545 GCCGTGCCAAGGTGGAGA 62.330 66.667 0.00 0.00 40.96 3.71
142 143 2.859273 CTAGCCGTGCCAAGGTGGAG 62.859 65.000 0.00 0.00 40.96 3.86
143 144 2.925706 TAGCCGTGCCAAGGTGGA 60.926 61.111 0.00 0.00 40.96 4.02
144 145 1.895020 TACTAGCCGTGCCAAGGTGG 61.895 60.000 0.00 0.00 41.55 4.61
145 146 0.460284 CTACTAGCCGTGCCAAGGTG 60.460 60.000 0.00 0.00 0.00 4.00
146 147 0.613853 TCTACTAGCCGTGCCAAGGT 60.614 55.000 0.00 0.00 0.00 3.50
147 148 0.535335 TTCTACTAGCCGTGCCAAGG 59.465 55.000 0.00 0.00 0.00 3.61
148 149 1.204941 ACTTCTACTAGCCGTGCCAAG 59.795 52.381 0.00 0.00 0.00 3.61
149 150 1.263356 ACTTCTACTAGCCGTGCCAA 58.737 50.000 0.00 0.00 0.00 4.52
150 151 1.263356 AACTTCTACTAGCCGTGCCA 58.737 50.000 0.00 0.00 0.00 4.92
151 152 3.515330 TTAACTTCTACTAGCCGTGCC 57.485 47.619 0.00 0.00 0.00 5.01
152 153 7.095732 GGAAATATTAACTTCTACTAGCCGTGC 60.096 40.741 0.00 0.00 0.00 5.34
153 154 7.384387 GGGAAATATTAACTTCTACTAGCCGTG 59.616 40.741 0.00 0.00 0.00 4.94
154 155 7.289549 AGGGAAATATTAACTTCTACTAGCCGT 59.710 37.037 0.00 0.00 0.00 5.68
155 156 7.668492 AGGGAAATATTAACTTCTACTAGCCG 58.332 38.462 0.00 0.00 0.00 5.52
188 189 8.317679 AAGCAGTGAGACTGATATTAACTTCTT 58.682 33.333 7.92 0.00 45.10 2.52
189 190 7.846066 AAGCAGTGAGACTGATATTAACTTCT 58.154 34.615 7.92 0.00 45.10 2.85
190 191 8.485976 AAAGCAGTGAGACTGATATTAACTTC 57.514 34.615 7.92 0.00 45.10 3.01
191 192 8.854614 AAAAGCAGTGAGACTGATATTAACTT 57.145 30.769 7.92 0.00 45.10 2.66
192 193 8.854614 AAAAAGCAGTGAGACTGATATTAACT 57.145 30.769 7.92 0.00 45.10 2.24
193 194 8.940952 AGAAAAAGCAGTGAGACTGATATTAAC 58.059 33.333 7.92 0.00 45.10 2.01
194 195 9.507329 AAGAAAAAGCAGTGAGACTGATATTAA 57.493 29.630 7.92 0.00 45.10 1.40
195 196 9.507329 AAAGAAAAAGCAGTGAGACTGATATTA 57.493 29.630 7.92 0.00 45.10 0.98
196 197 7.992754 AAGAAAAAGCAGTGAGACTGATATT 57.007 32.000 7.92 0.95 45.10 1.28
197 198 7.882271 AGAAAGAAAAAGCAGTGAGACTGATAT 59.118 33.333 7.92 0.00 45.10 1.63
198 199 7.220030 AGAAAGAAAAAGCAGTGAGACTGATA 58.780 34.615 7.92 0.00 45.10 2.15
202 203 9.732130 ATAATAGAAAGAAAAAGCAGTGAGACT 57.268 29.630 0.00 0.00 0.00 3.24
240 241 4.143986 AGATTCCCCGCAAAAACAAAAA 57.856 36.364 0.00 0.00 0.00 1.94
241 242 3.828875 AGATTCCCCGCAAAAACAAAA 57.171 38.095 0.00 0.00 0.00 2.44
242 243 5.476091 AATAGATTCCCCGCAAAAACAAA 57.524 34.783 0.00 0.00 0.00 2.83
243 244 6.783708 ATAATAGATTCCCCGCAAAAACAA 57.216 33.333 0.00 0.00 0.00 2.83
244 245 7.883391 TTATAATAGATTCCCCGCAAAAACA 57.117 32.000 0.00 0.00 0.00 2.83
250 251 9.429109 TCAGTATATTATAATAGATTCCCCGCA 57.571 33.333 10.79 0.00 0.00 5.69
272 273 8.090214 CCACAACATATTTTTCTTCCAATCAGT 58.910 33.333 0.00 0.00 0.00 3.41
273 274 8.306038 TCCACAACATATTTTTCTTCCAATCAG 58.694 33.333 0.00 0.00 0.00 2.90
274 275 8.087750 GTCCACAACATATTTTTCTTCCAATCA 58.912 33.333 0.00 0.00 0.00 2.57
275 276 8.087750 TGTCCACAACATATTTTTCTTCCAATC 58.912 33.333 0.00 0.00 31.20 2.67
276 277 7.961351 TGTCCACAACATATTTTTCTTCCAAT 58.039 30.769 0.00 0.00 31.20 3.16
277 278 7.069331 ACTGTCCACAACATATTTTTCTTCCAA 59.931 33.333 0.00 0.00 37.23 3.53
278 279 6.549364 ACTGTCCACAACATATTTTTCTTCCA 59.451 34.615 0.00 0.00 37.23 3.53
279 280 6.863126 CACTGTCCACAACATATTTTTCTTCC 59.137 38.462 0.00 0.00 37.23 3.46
280 281 6.863126 CCACTGTCCACAACATATTTTTCTTC 59.137 38.462 0.00 0.00 37.23 2.87
281 282 6.239289 CCCACTGTCCACAACATATTTTTCTT 60.239 38.462 0.00 0.00 37.23 2.52
282 283 5.243730 CCCACTGTCCACAACATATTTTTCT 59.756 40.000 0.00 0.00 37.23 2.52
283 284 5.242838 TCCCACTGTCCACAACATATTTTTC 59.757 40.000 0.00 0.00 37.23 2.29
284 285 5.144100 TCCCACTGTCCACAACATATTTTT 58.856 37.500 0.00 0.00 37.23 1.94
285 286 4.735369 TCCCACTGTCCACAACATATTTT 58.265 39.130 0.00 0.00 37.23 1.82
286 287 4.335416 CTCCCACTGTCCACAACATATTT 58.665 43.478 0.00 0.00 37.23 1.40
287 288 3.308402 CCTCCCACTGTCCACAACATATT 60.308 47.826 0.00 0.00 37.23 1.28
288 289 2.239654 CCTCCCACTGTCCACAACATAT 59.760 50.000 0.00 0.00 37.23 1.78
289 290 1.628340 CCTCCCACTGTCCACAACATA 59.372 52.381 0.00 0.00 37.23 2.29
290 291 0.401738 CCTCCCACTGTCCACAACAT 59.598 55.000 0.00 0.00 37.23 2.71
291 292 1.705002 CCCTCCCACTGTCCACAACA 61.705 60.000 0.00 0.00 36.18 3.33
292 293 1.073199 CCCTCCCACTGTCCACAAC 59.927 63.158 0.00 0.00 0.00 3.32
293 294 2.153401 CCCCTCCCACTGTCCACAA 61.153 63.158 0.00 0.00 0.00 3.33
294 295 2.529136 CCCCTCCCACTGTCCACA 60.529 66.667 0.00 0.00 0.00 4.17
295 296 2.203938 TCCCCTCCCACTGTCCAC 60.204 66.667 0.00 0.00 0.00 4.02
296 297 2.122729 CTCCCCTCCCACTGTCCA 59.877 66.667 0.00 0.00 0.00 4.02
297 298 2.689034 CCTCCCCTCCCACTGTCC 60.689 72.222 0.00 0.00 0.00 4.02
298 299 2.122954 ACCTCCCCTCCCACTGTC 59.877 66.667 0.00 0.00 0.00 3.51
299 300 2.203998 CACCTCCCCTCCCACTGT 60.204 66.667 0.00 0.00 0.00 3.55
300 301 3.721706 GCACCTCCCCTCCCACTG 61.722 72.222 0.00 0.00 0.00 3.66
306 307 2.616458 AATGGTGGCACCTCCCCTC 61.616 63.158 34.69 9.45 39.58 4.30
307 308 2.535317 AATGGTGGCACCTCCCCT 60.535 61.111 34.69 13.50 39.58 4.79
308 309 1.858739 TACAATGGTGGCACCTCCCC 61.859 60.000 34.69 11.26 39.58 4.81
309 310 0.394352 CTACAATGGTGGCACCTCCC 60.394 60.000 34.69 11.66 39.58 4.30
310 311 0.328258 ACTACAATGGTGGCACCTCC 59.672 55.000 34.69 12.06 39.58 4.30
311 312 3.134804 AGATACTACAATGGTGGCACCTC 59.865 47.826 34.69 20.96 39.58 3.85
312 313 3.115390 AGATACTACAATGGTGGCACCT 58.885 45.455 34.69 18.86 39.58 4.00
313 314 3.560636 AGATACTACAATGGTGGCACC 57.439 47.619 29.75 29.75 39.22 5.01
314 315 4.452455 GCATAGATACTACAATGGTGGCAC 59.548 45.833 9.70 9.70 0.00 5.01
315 316 4.504864 GGCATAGATACTACAATGGTGGCA 60.505 45.833 0.00 0.00 0.00 4.92
316 317 4.003648 GGCATAGATACTACAATGGTGGC 58.996 47.826 0.00 0.00 0.00 5.01
317 318 4.245660 CGGCATAGATACTACAATGGTGG 58.754 47.826 0.00 0.00 0.00 4.61
318 319 4.245660 CCGGCATAGATACTACAATGGTG 58.754 47.826 0.00 0.00 0.00 4.17
319 320 3.306780 GCCGGCATAGATACTACAATGGT 60.307 47.826 24.80 0.00 0.00 3.55
320 321 3.262420 GCCGGCATAGATACTACAATGG 58.738 50.000 24.80 0.00 0.00 3.16
321 322 3.262420 GGCCGGCATAGATACTACAATG 58.738 50.000 30.85 0.00 0.00 2.82
322 323 2.236395 GGGCCGGCATAGATACTACAAT 59.764 50.000 30.85 0.00 0.00 2.71
323 324 1.621814 GGGCCGGCATAGATACTACAA 59.378 52.381 30.85 0.00 0.00 2.41
324 325 1.263356 GGGCCGGCATAGATACTACA 58.737 55.000 30.85 0.00 0.00 2.74
325 326 1.263356 TGGGCCGGCATAGATACTAC 58.737 55.000 30.85 6.06 0.00 2.73
326 327 2.236146 CAATGGGCCGGCATAGATACTA 59.764 50.000 30.85 6.98 0.00 1.82
327 328 1.003580 CAATGGGCCGGCATAGATACT 59.996 52.381 30.85 0.00 0.00 2.12
328 329 1.003118 TCAATGGGCCGGCATAGATAC 59.997 52.381 30.85 8.62 0.00 2.24
329 330 1.357137 TCAATGGGCCGGCATAGATA 58.643 50.000 30.85 6.16 0.00 1.98
330 331 0.478072 TTCAATGGGCCGGCATAGAT 59.522 50.000 30.85 10.92 0.00 1.98
331 332 0.257328 TTTCAATGGGCCGGCATAGA 59.743 50.000 30.85 15.24 0.00 1.98
332 333 1.110442 TTTTCAATGGGCCGGCATAG 58.890 50.000 30.85 12.97 0.00 2.23
333 334 1.561643 TTTTTCAATGGGCCGGCATA 58.438 45.000 30.85 17.20 0.00 3.14
334 335 2.370718 TTTTTCAATGGGCCGGCAT 58.629 47.368 30.85 11.77 0.00 4.40
335 336 3.876873 TTTTTCAATGGGCCGGCA 58.123 50.000 30.85 9.36 0.00 5.69
365 366 1.801025 CGGCCGTGCAAACTTCTTTTT 60.801 47.619 19.50 0.00 0.00 1.94
366 367 0.248866 CGGCCGTGCAAACTTCTTTT 60.249 50.000 19.50 0.00 0.00 2.27
367 368 1.358759 CGGCCGTGCAAACTTCTTT 59.641 52.632 19.50 0.00 0.00 2.52
368 369 2.551912 CCGGCCGTGCAAACTTCTT 61.552 57.895 26.12 0.00 0.00 2.52
369 370 2.748058 ATCCGGCCGTGCAAACTTCT 62.748 55.000 26.12 0.00 0.00 2.85
370 371 1.022451 TATCCGGCCGTGCAAACTTC 61.022 55.000 26.12 0.00 0.00 3.01
371 372 0.606944 TTATCCGGCCGTGCAAACTT 60.607 50.000 26.12 1.57 0.00 2.66
372 373 0.606944 TTTATCCGGCCGTGCAAACT 60.607 50.000 26.12 2.50 0.00 2.66
373 374 0.454196 ATTTATCCGGCCGTGCAAAC 59.546 50.000 26.12 0.00 0.00 2.93
374 375 0.736053 GATTTATCCGGCCGTGCAAA 59.264 50.000 26.12 19.51 0.00 3.68
375 376 1.098712 GGATTTATCCGGCCGTGCAA 61.099 55.000 26.12 11.46 37.19 4.08
376 377 1.525077 GGATTTATCCGGCCGTGCA 60.525 57.895 26.12 7.89 37.19 4.57
377 378 3.340789 GGATTTATCCGGCCGTGC 58.659 61.111 26.12 5.54 37.19 5.34
394 395 0.816825 CCTGAATCCATGCCTCCGTG 60.817 60.000 0.00 0.00 0.00 4.94
395 396 1.274703 ACCTGAATCCATGCCTCCGT 61.275 55.000 0.00 0.00 0.00 4.69
396 397 0.816825 CACCTGAATCCATGCCTCCG 60.817 60.000 0.00 0.00 0.00 4.63
397 398 0.466922 CCACCTGAATCCATGCCTCC 60.467 60.000 0.00 0.00 0.00 4.30
398 399 1.105759 GCCACCTGAATCCATGCCTC 61.106 60.000 0.00 0.00 0.00 4.70
399 400 1.076485 GCCACCTGAATCCATGCCT 60.076 57.895 0.00 0.00 0.00 4.75
400 401 2.484062 CGCCACCTGAATCCATGCC 61.484 63.158 0.00 0.00 0.00 4.40
401 402 2.484062 CCGCCACCTGAATCCATGC 61.484 63.158 0.00 0.00 0.00 4.06
402 403 1.077501 ACCGCCACCTGAATCCATG 60.078 57.895 0.00 0.00 0.00 3.66
403 404 1.224592 GACCGCCACCTGAATCCAT 59.775 57.895 0.00 0.00 0.00 3.41
404 405 2.668632 GACCGCCACCTGAATCCA 59.331 61.111 0.00 0.00 0.00 3.41
405 406 2.511600 CGACCGCCACCTGAATCC 60.512 66.667 0.00 0.00 0.00 3.01
406 407 1.810030 GACGACCGCCACCTGAATC 60.810 63.158 0.00 0.00 0.00 2.52
407 408 2.264794 GACGACCGCCACCTGAAT 59.735 61.111 0.00 0.00 0.00 2.57
408 409 4.351938 CGACGACCGCCACCTGAA 62.352 66.667 0.00 0.00 0.00 3.02
422 423 1.398071 GCTTTAGTTTGCACGGTCGAC 60.398 52.381 7.13 7.13 0.00 4.20
423 424 0.863144 GCTTTAGTTTGCACGGTCGA 59.137 50.000 0.00 0.00 0.00 4.20
424 425 0.450482 CGCTTTAGTTTGCACGGTCG 60.450 55.000 0.00 0.00 0.00 4.79
425 426 0.724785 GCGCTTTAGTTTGCACGGTC 60.725 55.000 0.00 0.00 0.00 4.79
426 427 1.281656 GCGCTTTAGTTTGCACGGT 59.718 52.632 0.00 0.00 0.00 4.83
427 428 1.792057 CGCGCTTTAGTTTGCACGG 60.792 57.895 5.56 0.00 32.11 4.94
428 429 1.792057 CCGCGCTTTAGTTTGCACG 60.792 57.895 5.56 0.00 34.97 5.34
429 430 2.080636 GCCGCGCTTTAGTTTGCAC 61.081 57.895 5.56 0.00 0.00 4.57
430 431 2.254051 GCCGCGCTTTAGTTTGCA 59.746 55.556 5.56 0.00 0.00 4.08
431 432 2.504026 GGCCGCGCTTTAGTTTGC 60.504 61.111 5.56 0.00 0.00 3.68
432 433 0.109319 AATGGCCGCGCTTTAGTTTG 60.109 50.000 5.56 0.00 0.00 2.93
433 434 0.170339 GAATGGCCGCGCTTTAGTTT 59.830 50.000 5.56 0.00 0.00 2.66
434 435 1.800681 GAATGGCCGCGCTTTAGTT 59.199 52.632 5.56 0.00 0.00 2.24
435 436 2.461110 CGAATGGCCGCGCTTTAGT 61.461 57.895 5.56 0.00 0.00 2.24
436 437 2.324477 CGAATGGCCGCGCTTTAG 59.676 61.111 5.56 0.00 0.00 1.85
437 438 3.199190 CCGAATGGCCGCGCTTTA 61.199 61.111 5.56 0.00 0.00 1.85
447 448 1.666209 AAGCATTTCCCGCCGAATGG 61.666 55.000 0.00 0.00 34.60 3.16
448 449 0.173255 AAAGCATTTCCCGCCGAATG 59.827 50.000 0.00 0.00 27.08 2.67
449 450 2.578683 AAAGCATTTCCCGCCGAAT 58.421 47.368 0.00 0.00 27.08 3.34
450 451 4.089105 AAAGCATTTCCCGCCGAA 57.911 50.000 0.00 0.00 27.08 4.30
461 462 8.954350 GCATAGACATATGGATAAAGAAAGCAT 58.046 33.333 7.80 0.00 39.42 3.79
462 463 7.391554 GGCATAGACATATGGATAAAGAAAGCA 59.608 37.037 7.80 0.00 39.42 3.91
463 464 7.148171 GGGCATAGACATATGGATAAAGAAAGC 60.148 40.741 7.80 0.00 39.42 3.51
464 465 7.884877 TGGGCATAGACATATGGATAAAGAAAG 59.115 37.037 7.80 0.00 39.42 2.62
465 466 7.754624 TGGGCATAGACATATGGATAAAGAAA 58.245 34.615 7.80 0.00 39.42 2.52
466 467 7.328404 TGGGCATAGACATATGGATAAAGAA 57.672 36.000 7.80 0.00 39.42 2.52
467 468 6.577039 GCTGGGCATAGACATATGGATAAAGA 60.577 42.308 7.80 0.00 39.42 2.52
468 469 5.587844 GCTGGGCATAGACATATGGATAAAG 59.412 44.000 7.80 0.00 39.42 1.85
469 470 5.500234 GCTGGGCATAGACATATGGATAAA 58.500 41.667 7.80 0.00 39.42 1.40
470 471 4.080356 GGCTGGGCATAGACATATGGATAA 60.080 45.833 7.80 0.00 39.42 1.75
471 472 3.455910 GGCTGGGCATAGACATATGGATA 59.544 47.826 7.80 0.00 39.42 2.59
472 473 2.240667 GGCTGGGCATAGACATATGGAT 59.759 50.000 7.80 0.00 39.42 3.41
473 474 1.630369 GGCTGGGCATAGACATATGGA 59.370 52.381 7.80 0.00 39.42 3.41
474 475 1.352017 TGGCTGGGCATAGACATATGG 59.648 52.381 7.80 0.00 39.42 2.74
475 476 2.039480 ACTGGCTGGGCATAGACATATG 59.961 50.000 0.00 0.00 41.57 1.78
476 477 2.039480 CACTGGCTGGGCATAGACATAT 59.961 50.000 0.00 0.00 34.60 1.78
477 478 1.417517 CACTGGCTGGGCATAGACATA 59.582 52.381 0.00 0.00 34.60 2.29
478 479 0.182061 CACTGGCTGGGCATAGACAT 59.818 55.000 0.00 0.00 34.60 3.06
479 480 1.603842 CACTGGCTGGGCATAGACA 59.396 57.895 0.00 0.00 33.81 3.41
480 481 1.821332 GCACTGGCTGGGCATAGAC 60.821 63.158 14.21 0.00 46.29 2.59
481 482 2.591753 GCACTGGCTGGGCATAGA 59.408 61.111 14.21 0.00 46.29 1.98
487 488 2.742372 GTACGTGCACTGGCTGGG 60.742 66.667 16.19 0.00 41.91 4.45
488 489 2.480853 TACGTACGTGCACTGGCTGG 62.481 60.000 30.25 0.00 41.91 4.85
489 490 1.081041 TACGTACGTGCACTGGCTG 60.081 57.895 30.25 0.68 41.91 4.85
490 491 1.080974 GTACGTACGTGCACTGGCT 60.081 57.895 30.25 2.64 41.91 4.75
491 492 2.430942 CGTACGTACGTGCACTGGC 61.431 63.158 33.95 12.27 44.13 4.85
492 493 3.744949 CGTACGTACGTGCACTGG 58.255 61.111 33.95 14.52 44.13 4.00
501 502 2.758840 GTGTGCGCACGTACGTAC 59.241 61.111 33.22 20.59 46.94 3.67
509 510 2.588877 AGGTGAGTGTGTGCGCAC 60.589 61.111 33.11 33.11 45.44 5.34
510 511 2.588596 CAGGTGAGTGTGTGCGCA 60.589 61.111 5.66 5.66 0.00 6.09
511 512 1.714899 AAACAGGTGAGTGTGTGCGC 61.715 55.000 0.00 0.00 0.00 6.09
512 513 0.732571 AAAACAGGTGAGTGTGTGCG 59.267 50.000 0.00 0.00 0.00 5.34
513 514 2.939460 AAAAACAGGTGAGTGTGTGC 57.061 45.000 0.00 0.00 0.00 4.57
531 532 7.551974 TGCACCTGAAAAATGAATTGAGAAAAA 59.448 29.630 0.00 0.00 0.00 1.94
532 533 7.046652 TGCACCTGAAAAATGAATTGAGAAAA 58.953 30.769 0.00 0.00 0.00 2.29
533 534 6.580788 TGCACCTGAAAAATGAATTGAGAAA 58.419 32.000 0.00 0.00 0.00 2.52
534 535 6.159299 TGCACCTGAAAAATGAATTGAGAA 57.841 33.333 0.00 0.00 0.00 2.87
535 536 5.302568 ACTGCACCTGAAAAATGAATTGAGA 59.697 36.000 0.00 0.00 0.00 3.27
536 537 5.404366 CACTGCACCTGAAAAATGAATTGAG 59.596 40.000 0.00 0.00 0.00 3.02
537 538 5.163426 ACACTGCACCTGAAAAATGAATTGA 60.163 36.000 0.00 0.00 0.00 2.57
538 539 5.051816 ACACTGCACCTGAAAAATGAATTG 58.948 37.500 0.00 0.00 0.00 2.32
539 540 5.280654 ACACTGCACCTGAAAAATGAATT 57.719 34.783 0.00 0.00 0.00 2.17
540 541 4.942761 ACACTGCACCTGAAAAATGAAT 57.057 36.364 0.00 0.00 0.00 2.57
541 542 4.159321 TCAACACTGCACCTGAAAAATGAA 59.841 37.500 0.00 0.00 0.00 2.57
542 543 3.698539 TCAACACTGCACCTGAAAAATGA 59.301 39.130 0.00 0.00 0.00 2.57
543 544 3.798337 GTCAACACTGCACCTGAAAAATG 59.202 43.478 0.00 0.00 0.00 2.32
544 545 3.181476 GGTCAACACTGCACCTGAAAAAT 60.181 43.478 0.00 0.00 0.00 1.82
545 546 2.165437 GGTCAACACTGCACCTGAAAAA 59.835 45.455 0.00 0.00 0.00 1.94
546 547 1.748493 GGTCAACACTGCACCTGAAAA 59.252 47.619 0.00 0.00 0.00 2.29
547 548 1.340502 TGGTCAACACTGCACCTGAAA 60.341 47.619 0.00 0.00 0.00 2.69
548 549 0.254462 TGGTCAACACTGCACCTGAA 59.746 50.000 0.00 0.00 0.00 3.02
549 550 0.179048 CTGGTCAACACTGCACCTGA 60.179 55.000 0.00 0.00 32.30 3.86
550 551 1.168407 CCTGGTCAACACTGCACCTG 61.168 60.000 0.00 0.00 0.00 4.00
551 552 1.149174 CCTGGTCAACACTGCACCT 59.851 57.895 0.00 0.00 0.00 4.00
552 553 2.555547 GCCTGGTCAACACTGCACC 61.556 63.158 0.00 0.00 0.00 5.01
553 554 2.555547 GGCCTGGTCAACACTGCAC 61.556 63.158 0.00 0.00 0.00 4.57
554 555 2.203337 GGCCTGGTCAACACTGCA 60.203 61.111 0.00 0.00 0.00 4.41
555 556 2.203337 TGGCCTGGTCAACACTGC 60.203 61.111 3.32 0.00 0.00 4.40
556 557 1.149174 ACTGGCCTGGTCAACACTG 59.851 57.895 14.82 0.00 0.00 3.66
557 558 1.149174 CACTGGCCTGGTCAACACT 59.851 57.895 14.82 0.00 0.00 3.55
558 559 1.898574 CCACTGGCCTGGTCAACAC 60.899 63.158 14.82 0.00 0.00 3.32
559 560 2.515398 CCACTGGCCTGGTCAACA 59.485 61.111 14.82 0.00 0.00 3.33
560 561 2.985847 GCCACTGGCCTGGTCAAC 60.986 66.667 14.82 0.00 44.06 3.18
569 570 1.669265 GGTTAAATACTCGCCACTGGC 59.331 52.381 10.35 10.35 46.75 4.85
570 571 2.980568 TGGTTAAATACTCGCCACTGG 58.019 47.619 0.00 0.00 0.00 4.00
571 572 5.365403 TTTTGGTTAAATACTCGCCACTG 57.635 39.130 0.00 0.00 0.00 3.66
572 573 5.533528 AGTTTTTGGTTAAATACTCGCCACT 59.466 36.000 0.00 0.00 34.37 4.00
573 574 5.765176 AGTTTTTGGTTAAATACTCGCCAC 58.235 37.500 0.00 0.00 34.37 5.01
574 575 6.072563 GGTAGTTTTTGGTTAAATACTCGCCA 60.073 38.462 0.00 0.00 38.47 5.69
575 576 6.072563 TGGTAGTTTTTGGTTAAATACTCGCC 60.073 38.462 0.00 0.00 38.47 5.54
576 577 6.798476 GTGGTAGTTTTTGGTTAAATACTCGC 59.202 38.462 0.00 0.00 38.47 5.03
1158 1160 3.317406 AGGGGTTTCCTGCAAAAGAAAT 58.683 40.909 8.85 0.00 46.07 2.17
1914 1961 2.507407 TGTCCCAAATCCTGGTTAGC 57.493 50.000 0.00 0.00 44.76 3.09
2470 2523 8.865090 ACATGAAACTTTCCCAAAATATACACA 58.135 29.630 0.00 0.00 0.00 3.72
3076 3186 0.970937 GGTGGACGATCTCCCAGACA 60.971 60.000 3.50 0.00 38.49 3.41
3230 3340 2.680352 TCCAGTGACGAGCCCTCC 60.680 66.667 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.