Multiple sequence alignment - TraesCS6B01G437100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G437100 chr6B 100.000 3686 0 0 1 3686 704305896 704302211 0.000000e+00 6807.0
1 TraesCS6B01G437100 chr6B 82.552 1771 244 37 1210 2964 704183882 704182161 0.000000e+00 1498.0
2 TraesCS6B01G437100 chr6B 83.476 1519 218 23 1210 2711 704177939 704176437 0.000000e+00 1384.0
3 TraesCS6B01G437100 chr6B 81.076 1543 249 22 1204 2717 704187440 704188968 0.000000e+00 1192.0
4 TraesCS6B01G437100 chr6B 80.101 789 88 22 2844 3600 704175575 704174824 1.170000e-144 523.0
5 TraesCS6B01G437100 chr6D 92.188 2432 102 29 585 3002 461856608 461854251 0.000000e+00 3358.0
6 TraesCS6B01G437100 chr6D 82.967 1773 233 40 1210 2964 462014285 462012564 0.000000e+00 1537.0
7 TraesCS6B01G437100 chr6D 78.779 2309 353 89 481 2717 461923390 461925633 0.000000e+00 1423.0
8 TraesCS6B01G437100 chr6D 76.689 296 56 7 3189 3474 319251348 319251056 6.380000e-33 152.0
9 TraesCS6B01G437100 chr6A 82.506 1772 242 42 1210 2964 608861089 608859369 0.000000e+00 1493.0
10 TraesCS6B01G437100 chr6A 83.301 1557 214 28 1210 2735 608902286 608900745 0.000000e+00 1393.0
11 TraesCS6B01G437100 chr6A 78.795 2042 338 59 721 2717 608709723 608711714 0.000000e+00 1284.0
12 TraesCS6B01G437100 chr6A 81.137 1108 147 43 1875 2957 608968557 608969627 0.000000e+00 832.0
13 TraesCS6B01G437100 chr6A 80.078 1024 125 40 2708 3686 608900702 608899713 0.000000e+00 688.0
14 TraesCS6B01G437100 chr6A 77.672 421 80 12 3181 3593 560039790 560039376 1.020000e-60 244.0
15 TraesCS6B01G437100 chr6A 74.747 297 59 11 3180 3470 65660357 65660071 6.470000e-23 119.0
16 TraesCS6B01G437100 chr5B 82.816 1513 222 25 1210 2705 65588109 65586618 0.000000e+00 1319.0
17 TraesCS6B01G437100 chr5B 85.324 293 23 10 2657 2942 65586606 65586327 6.020000e-73 285.0
18 TraesCS6B01G437100 chr5B 97.500 40 1 0 3201 3240 490359969 490360008 6.610000e-08 69.4
19 TraesCS6B01G437100 chr2B 96.394 416 13 2 1 415 9278274 9278688 0.000000e+00 684.0
20 TraesCS6B01G437100 chr1B 95.192 416 18 2 1 415 588143701 588143287 0.000000e+00 656.0
21 TraesCS6B01G437100 chr3B 94.749 419 21 1 1 418 53912384 53911966 0.000000e+00 651.0
22 TraesCS6B01G437100 chr3B 94.231 416 22 2 1 415 792731884 792732298 5.190000e-178 634.0
23 TraesCS6B01G437100 chr3B 96.893 354 9 2 63 415 396717910 396718262 3.170000e-165 592.0
24 TraesCS6B01G437100 chr3B 86.145 166 21 1 3307 3470 792819893 792820058 1.050000e-40 178.0
25 TraesCS6B01G437100 chr7B 94.272 419 22 2 1 418 605987892 605988309 1.120000e-179 640.0
26 TraesCS6B01G437100 chr7B 93.349 421 25 3 1 419 551537643 551538062 1.450000e-173 619.0
27 TraesCS6B01G437100 chr7D 85.885 418 54 5 1 416 479668128 479668542 1.220000e-119 440.0
28 TraesCS6B01G437100 chr4D 85.714 413 54 5 3 413 135121192 135121601 7.310000e-117 431.0
29 TraesCS6B01G437100 chr4D 77.305 282 52 5 3177 3454 80948664 80948937 4.930000e-34 156.0
30 TraesCS6B01G437100 chr5D 77.523 436 75 12 3189 3601 283013837 283013402 1.320000e-59 241.0
31 TraesCS6B01G437100 chr1A 75.382 524 91 25 3190 3681 64898953 64899470 6.200000e-53 219.0
32 TraesCS6B01G437100 chr4A 75.980 408 70 14 3181 3569 537537241 537537639 6.290000e-43 185.0
33 TraesCS6B01G437100 chr4A 75.704 284 58 9 3199 3474 21637221 21637501 8.310000e-27 132.0
34 TraesCS6B01G437100 chr3A 77.544 285 50 10 3199 3474 363408868 363408589 3.810000e-35 159.0
35 TraesCS6B01G437100 chr2D 78.214 280 39 10 3305 3565 430600000 430599724 3.810000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G437100 chr6B 704302211 704305896 3685 True 6807.0 6807 100.0000 1 3686 1 chr6B.!!$R2 3685
1 TraesCS6B01G437100 chr6B 704182161 704183882 1721 True 1498.0 1498 82.5520 1210 2964 1 chr6B.!!$R1 1754
2 TraesCS6B01G437100 chr6B 704187440 704188968 1528 False 1192.0 1192 81.0760 1204 2717 1 chr6B.!!$F1 1513
3 TraesCS6B01G437100 chr6B 704174824 704177939 3115 True 953.5 1384 81.7885 1210 3600 2 chr6B.!!$R3 2390
4 TraesCS6B01G437100 chr6D 461854251 461856608 2357 True 3358.0 3358 92.1880 585 3002 1 chr6D.!!$R2 2417
5 TraesCS6B01G437100 chr6D 462012564 462014285 1721 True 1537.0 1537 82.9670 1210 2964 1 chr6D.!!$R3 1754
6 TraesCS6B01G437100 chr6D 461923390 461925633 2243 False 1423.0 1423 78.7790 481 2717 1 chr6D.!!$F1 2236
7 TraesCS6B01G437100 chr6A 608859369 608861089 1720 True 1493.0 1493 82.5060 1210 2964 1 chr6A.!!$R3 1754
8 TraesCS6B01G437100 chr6A 608709723 608711714 1991 False 1284.0 1284 78.7950 721 2717 1 chr6A.!!$F1 1996
9 TraesCS6B01G437100 chr6A 608899713 608902286 2573 True 1040.5 1393 81.6895 1210 3686 2 chr6A.!!$R4 2476
10 TraesCS6B01G437100 chr6A 608968557 608969627 1070 False 832.0 832 81.1370 1875 2957 1 chr6A.!!$F2 1082
11 TraesCS6B01G437100 chr5B 65586327 65588109 1782 True 802.0 1319 84.0700 1210 2942 2 chr5B.!!$R1 1732
12 TraesCS6B01G437100 chr1A 64898953 64899470 517 False 219.0 219 75.3820 3190 3681 1 chr1A.!!$F1 491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.033405 AGGCCAATGCTGAAGCTCAT 60.033 50.0 5.01 0.0 42.66 2.90 F
475 476 0.034059 AGAGATATTGCCCTTCCGCG 59.966 55.0 0.00 0.0 0.00 6.46 F
503 504 0.036388 CTGCCCTAAACGCTCTCCAA 60.036 55.0 0.00 0.0 0.00 3.53 F
1190 1242 0.251634 TGCCCAACGATGACATGCTA 59.748 50.0 0.00 0.0 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1198 1250 0.251634 TAGCATGTCATCGTTGGGCA 59.748 50.000 0.00 0.0 0.00 5.36 R
2377 2455 1.305930 GGTTCCCACTTCACATCCGC 61.306 60.000 0.00 0.0 0.00 5.54 R
2421 2499 4.712476 AGATAGTTAGCCTTGCCAGATTG 58.288 43.478 0.00 0.0 0.00 2.67 R
2858 3827 0.238289 GCACAAGCACGTACAGCAAT 59.762 50.000 9.63 0.0 41.58 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.256281 GCAGGGACAAAGAAGGGAG 57.744 57.895 0.00 0.00 0.00 4.30
19 20 0.322906 GCAGGGACAAAGAAGGGAGG 60.323 60.000 0.00 0.00 0.00 4.30
20 21 1.068121 CAGGGACAAAGAAGGGAGGT 58.932 55.000 0.00 0.00 0.00 3.85
21 22 2.266279 CAGGGACAAAGAAGGGAGGTA 58.734 52.381 0.00 0.00 0.00 3.08
22 23 2.846827 CAGGGACAAAGAAGGGAGGTAT 59.153 50.000 0.00 0.00 0.00 2.73
23 24 3.267031 CAGGGACAAAGAAGGGAGGTATT 59.733 47.826 0.00 0.00 0.00 1.89
24 25 3.923425 AGGGACAAAGAAGGGAGGTATTT 59.077 43.478 0.00 0.00 0.00 1.40
25 26 4.017126 GGGACAAAGAAGGGAGGTATTTG 58.983 47.826 0.00 0.00 37.00 2.32
26 27 4.017126 GGACAAAGAAGGGAGGTATTTGG 58.983 47.826 0.00 0.00 35.64 3.28
27 28 4.017126 GACAAAGAAGGGAGGTATTTGGG 58.983 47.826 0.00 0.00 35.64 4.12
28 29 2.760650 CAAAGAAGGGAGGTATTTGGGC 59.239 50.000 0.00 0.00 0.00 5.36
29 30 1.987080 AGAAGGGAGGTATTTGGGCT 58.013 50.000 0.00 0.00 0.00 5.19
30 31 1.847088 AGAAGGGAGGTATTTGGGCTC 59.153 52.381 0.00 0.00 0.00 4.70
31 32 0.927029 AAGGGAGGTATTTGGGCTCC 59.073 55.000 0.00 0.00 0.00 4.70
32 33 0.046397 AGGGAGGTATTTGGGCTCCT 59.954 55.000 0.00 0.00 34.80 3.69
33 34 0.474614 GGGAGGTATTTGGGCTCCTC 59.525 60.000 0.00 0.00 43.84 3.71
34 35 0.106894 GGAGGTATTTGGGCTCCTCG 59.893 60.000 0.00 0.00 45.04 4.63
35 36 0.106894 GAGGTATTTGGGCTCCTCGG 59.893 60.000 0.00 0.00 37.35 4.63
36 37 1.526225 GGTATTTGGGCTCCTCGGC 60.526 63.158 0.00 0.00 37.49 5.54
37 38 1.527370 GTATTTGGGCTCCTCGGCT 59.473 57.895 0.00 0.00 38.46 5.52
38 39 0.815615 GTATTTGGGCTCCTCGGCTG 60.816 60.000 0.00 0.00 38.46 4.85
39 40 1.271840 TATTTGGGCTCCTCGGCTGT 61.272 55.000 0.00 0.00 38.46 4.40
40 41 2.543067 ATTTGGGCTCCTCGGCTGTC 62.543 60.000 0.00 0.00 38.46 3.51
42 43 4.459089 GGGCTCCTCGGCTGTCAC 62.459 72.222 0.00 0.00 38.46 3.67
43 44 3.386237 GGCTCCTCGGCTGTCACT 61.386 66.667 0.00 0.00 34.85 3.41
44 45 2.659610 GCTCCTCGGCTGTCACTT 59.340 61.111 0.00 0.00 0.00 3.16
45 46 1.004440 GCTCCTCGGCTGTCACTTT 60.004 57.895 0.00 0.00 0.00 2.66
46 47 0.603975 GCTCCTCGGCTGTCACTTTT 60.604 55.000 0.00 0.00 0.00 2.27
47 48 1.151668 CTCCTCGGCTGTCACTTTTG 58.848 55.000 0.00 0.00 0.00 2.44
48 49 0.756294 TCCTCGGCTGTCACTTTTGA 59.244 50.000 0.00 0.00 0.00 2.69
49 50 1.347707 TCCTCGGCTGTCACTTTTGAT 59.652 47.619 0.00 0.00 33.11 2.57
50 51 1.466167 CCTCGGCTGTCACTTTTGATG 59.534 52.381 0.00 0.00 33.11 3.07
51 52 1.466167 CTCGGCTGTCACTTTTGATGG 59.534 52.381 0.00 0.00 33.11 3.51
52 53 1.202758 TCGGCTGTCACTTTTGATGGT 60.203 47.619 0.00 0.00 33.11 3.55
53 54 1.608590 CGGCTGTCACTTTTGATGGTT 59.391 47.619 0.00 0.00 33.11 3.67
54 55 2.034558 CGGCTGTCACTTTTGATGGTTT 59.965 45.455 0.00 0.00 33.11 3.27
55 56 3.383761 GGCTGTCACTTTTGATGGTTTG 58.616 45.455 0.00 0.00 33.11 2.93
56 57 3.383761 GCTGTCACTTTTGATGGTTTGG 58.616 45.455 0.00 0.00 33.11 3.28
57 58 3.181476 GCTGTCACTTTTGATGGTTTGGT 60.181 43.478 0.00 0.00 33.11 3.67
58 59 4.680440 GCTGTCACTTTTGATGGTTTGGTT 60.680 41.667 0.00 0.00 33.11 3.67
59 60 4.753233 TGTCACTTTTGATGGTTTGGTTG 58.247 39.130 0.00 0.00 33.11 3.77
60 61 4.464244 TGTCACTTTTGATGGTTTGGTTGA 59.536 37.500 0.00 0.00 33.11 3.18
61 62 5.128499 TGTCACTTTTGATGGTTTGGTTGAT 59.872 36.000 0.00 0.00 33.11 2.57
62 63 5.463061 GTCACTTTTGATGGTTTGGTTGATG 59.537 40.000 0.00 0.00 33.11 3.07
63 64 4.211794 CACTTTTGATGGTTTGGTTGATGC 59.788 41.667 0.00 0.00 0.00 3.91
64 65 4.141756 ACTTTTGATGGTTTGGTTGATGCA 60.142 37.500 0.00 0.00 0.00 3.96
65 66 3.663995 TTGATGGTTTGGTTGATGCAG 57.336 42.857 0.00 0.00 0.00 4.41
66 67 1.273048 TGATGGTTTGGTTGATGCAGC 59.727 47.619 0.00 0.00 0.00 5.25
67 68 0.244450 ATGGTTTGGTTGATGCAGCG 59.756 50.000 0.00 0.00 0.00 5.18
68 69 0.821301 TGGTTTGGTTGATGCAGCGA 60.821 50.000 0.00 0.00 0.00 4.93
69 70 0.313672 GGTTTGGTTGATGCAGCGAA 59.686 50.000 0.00 0.00 0.00 4.70
70 71 1.067635 GGTTTGGTTGATGCAGCGAAT 60.068 47.619 0.00 0.00 0.00 3.34
71 72 2.253603 GTTTGGTTGATGCAGCGAATC 58.746 47.619 0.00 0.00 0.00 2.52
72 73 1.825090 TTGGTTGATGCAGCGAATCT 58.175 45.000 0.00 0.00 0.00 2.40
73 74 1.089112 TGGTTGATGCAGCGAATCTG 58.911 50.000 0.00 0.00 45.62 2.90
74 75 0.379669 GGTTGATGCAGCGAATCTGG 59.620 55.000 0.00 0.00 43.06 3.86
76 77 1.739466 GTTGATGCAGCGAATCTGGAA 59.261 47.619 0.00 0.00 46.37 3.53
77 78 1.660167 TGATGCAGCGAATCTGGAAG 58.340 50.000 0.00 0.00 46.37 3.46
78 79 0.307146 GATGCAGCGAATCTGGAAGC 59.693 55.000 0.00 0.00 46.37 3.86
79 80 0.393402 ATGCAGCGAATCTGGAAGCA 60.393 50.000 0.00 0.00 46.37 3.91
80 81 1.300971 TGCAGCGAATCTGGAAGCAC 61.301 55.000 0.00 0.00 40.35 4.40
81 82 1.023513 GCAGCGAATCTGGAAGCACT 61.024 55.000 0.00 0.00 43.06 4.40
82 83 1.446907 CAGCGAATCTGGAAGCACTT 58.553 50.000 0.00 0.00 39.15 3.16
83 84 1.129998 CAGCGAATCTGGAAGCACTTG 59.870 52.381 0.00 0.00 39.15 3.16
84 85 0.179179 GCGAATCTGGAAGCACTTGC 60.179 55.000 0.00 0.00 42.49 4.01
100 101 3.195002 GCGTGCAGCGAGGCATTA 61.195 61.111 11.94 0.00 46.92 1.90
101 102 3.009140 CGTGCAGCGAGGCATTAG 58.991 61.111 4.72 0.00 46.92 1.73
102 103 2.711924 GTGCAGCGAGGCATTAGC 59.288 61.111 4.72 0.00 46.92 3.09
103 104 1.817099 GTGCAGCGAGGCATTAGCT 60.817 57.895 4.72 0.00 46.92 3.32
104 105 1.522355 TGCAGCGAGGCATTAGCTC 60.522 57.895 0.00 0.00 39.25 4.09
105 106 1.227497 GCAGCGAGGCATTAGCTCT 60.227 57.895 0.00 0.00 39.48 4.09
106 107 1.497223 GCAGCGAGGCATTAGCTCTG 61.497 60.000 0.00 0.00 39.48 3.35
107 108 0.879400 CAGCGAGGCATTAGCTCTGG 60.879 60.000 0.00 0.00 39.48 3.86
108 109 2.250237 GCGAGGCATTAGCTCTGGC 61.250 63.158 13.15 13.15 41.70 4.85
109 110 1.144716 CGAGGCATTAGCTCTGGCA 59.855 57.895 20.42 0.00 41.34 4.92
110 111 0.462581 CGAGGCATTAGCTCTGGCAA 60.463 55.000 20.42 0.00 41.34 4.52
111 112 1.755179 GAGGCATTAGCTCTGGCAAA 58.245 50.000 20.42 0.00 41.34 3.68
112 113 1.674962 GAGGCATTAGCTCTGGCAAAG 59.325 52.381 20.42 0.00 41.34 2.77
113 114 0.743097 GGCATTAGCTCTGGCAAAGG 59.257 55.000 15.38 0.00 41.70 3.11
114 115 1.683011 GGCATTAGCTCTGGCAAAGGA 60.683 52.381 15.38 0.00 41.70 3.36
115 116 1.403323 GCATTAGCTCTGGCAAAGGAC 59.597 52.381 0.00 0.00 41.70 3.85
116 117 2.019984 CATTAGCTCTGGCAAAGGACC 58.980 52.381 0.00 0.00 41.70 4.46
117 118 1.362224 TTAGCTCTGGCAAAGGACCT 58.638 50.000 0.00 0.00 41.70 3.85
118 119 0.905357 TAGCTCTGGCAAAGGACCTC 59.095 55.000 0.00 0.00 41.70 3.85
119 120 1.130054 AGCTCTGGCAAAGGACCTCA 61.130 55.000 0.00 0.00 41.70 3.86
120 121 0.250901 GCTCTGGCAAAGGACCTCAA 60.251 55.000 0.00 0.00 38.54 3.02
121 122 1.615384 GCTCTGGCAAAGGACCTCAAT 60.615 52.381 0.00 0.00 38.54 2.57
122 123 2.363683 CTCTGGCAAAGGACCTCAATC 58.636 52.381 0.00 0.00 0.00 2.67
123 124 1.988107 TCTGGCAAAGGACCTCAATCT 59.012 47.619 0.00 0.00 0.00 2.40
124 125 2.026822 TCTGGCAAAGGACCTCAATCTC 60.027 50.000 0.00 0.00 0.00 2.75
125 126 1.004745 TGGCAAAGGACCTCAATCTCC 59.995 52.381 0.00 0.00 0.00 3.71
126 127 1.683319 GGCAAAGGACCTCAATCTCCC 60.683 57.143 0.00 0.00 0.00 4.30
127 128 1.004745 GCAAAGGACCTCAATCTCCCA 59.995 52.381 0.00 0.00 0.00 4.37
128 129 2.716217 CAAAGGACCTCAATCTCCCAC 58.284 52.381 0.00 0.00 0.00 4.61
129 130 2.040278 CAAAGGACCTCAATCTCCCACA 59.960 50.000 0.00 0.00 0.00 4.17
130 131 2.277008 AGGACCTCAATCTCCCACAT 57.723 50.000 0.00 0.00 0.00 3.21
131 132 1.842562 AGGACCTCAATCTCCCACATG 59.157 52.381 0.00 0.00 0.00 3.21
132 133 1.561542 GGACCTCAATCTCCCACATGT 59.438 52.381 0.00 0.00 0.00 3.21
133 134 2.636830 GACCTCAATCTCCCACATGTG 58.363 52.381 19.31 19.31 0.00 3.21
134 135 2.237143 GACCTCAATCTCCCACATGTGA 59.763 50.000 27.46 7.46 0.00 3.58
135 136 2.848694 ACCTCAATCTCCCACATGTGAT 59.151 45.455 27.46 9.66 0.00 3.06
136 137 3.118112 ACCTCAATCTCCCACATGTGATC 60.118 47.826 27.46 0.00 0.00 2.92
137 138 3.118149 CCTCAATCTCCCACATGTGATCA 60.118 47.826 27.46 9.09 0.00 2.92
138 139 4.445879 CCTCAATCTCCCACATGTGATCAT 60.446 45.833 27.46 10.14 34.21 2.45
139 140 5.221783 CCTCAATCTCCCACATGTGATCATA 60.222 44.000 27.46 8.68 32.47 2.15
140 141 5.861727 TCAATCTCCCACATGTGATCATAG 58.138 41.667 27.46 15.04 32.47 2.23
141 142 4.904895 ATCTCCCACATGTGATCATAGG 57.095 45.455 27.46 17.59 32.47 2.57
142 143 3.657610 TCTCCCACATGTGATCATAGGT 58.342 45.455 27.46 3.74 32.47 3.08
143 144 4.040047 TCTCCCACATGTGATCATAGGTT 58.960 43.478 27.46 0.00 32.47 3.50
144 145 4.101585 TCTCCCACATGTGATCATAGGTTC 59.898 45.833 27.46 0.00 32.47 3.62
145 146 4.040047 TCCCACATGTGATCATAGGTTCT 58.960 43.478 27.46 0.00 32.47 3.01
146 147 4.132336 CCCACATGTGATCATAGGTTCTG 58.868 47.826 27.46 5.23 32.47 3.02
147 148 4.141642 CCCACATGTGATCATAGGTTCTGA 60.142 45.833 27.46 0.00 32.47 3.27
148 149 5.455755 CCCACATGTGATCATAGGTTCTGAT 60.456 44.000 27.46 0.00 36.07 2.90
149 150 6.060136 CCACATGTGATCATAGGTTCTGATT 58.940 40.000 27.46 0.00 33.56 2.57
150 151 6.017357 CCACATGTGATCATAGGTTCTGATTG 60.017 42.308 27.46 0.00 33.56 2.67
151 152 6.541278 CACATGTGATCATAGGTTCTGATTGT 59.459 38.462 21.64 0.00 33.56 2.71
152 153 7.712205 CACATGTGATCATAGGTTCTGATTGTA 59.288 37.037 21.64 0.00 33.56 2.41
153 154 8.435187 ACATGTGATCATAGGTTCTGATTGTAT 58.565 33.333 3.74 0.00 33.56 2.29
154 155 8.718734 CATGTGATCATAGGTTCTGATTGTATG 58.281 37.037 0.00 0.00 33.56 2.39
155 156 6.707608 TGTGATCATAGGTTCTGATTGTATGC 59.292 38.462 0.00 0.00 33.56 3.14
156 157 6.707608 GTGATCATAGGTTCTGATTGTATGCA 59.292 38.462 0.00 0.00 33.56 3.96
157 158 7.227314 GTGATCATAGGTTCTGATTGTATGCAA 59.773 37.037 0.00 0.00 39.16 4.08
158 159 7.443272 TGATCATAGGTTCTGATTGTATGCAAG 59.557 37.037 1.90 0.00 38.10 4.01
159 160 6.653020 TCATAGGTTCTGATTGTATGCAAGT 58.347 36.000 1.90 0.00 38.10 3.16
160 161 6.539826 TCATAGGTTCTGATTGTATGCAAGTG 59.460 38.462 1.90 0.00 38.10 3.16
161 162 4.012374 AGGTTCTGATTGTATGCAAGTGG 58.988 43.478 1.90 0.00 38.10 4.00
162 163 3.758554 GGTTCTGATTGTATGCAAGTGGT 59.241 43.478 1.90 0.00 38.10 4.16
163 164 4.142600 GGTTCTGATTGTATGCAAGTGGTC 60.143 45.833 1.90 0.00 38.10 4.02
164 165 4.558226 TCTGATTGTATGCAAGTGGTCT 57.442 40.909 1.90 0.00 38.10 3.85
165 166 4.507710 TCTGATTGTATGCAAGTGGTCTC 58.492 43.478 1.90 0.00 38.10 3.36
166 167 3.261580 TGATTGTATGCAAGTGGTCTCG 58.738 45.455 1.90 0.00 38.10 4.04
167 168 2.093306 TTGTATGCAAGTGGTCTCGG 57.907 50.000 0.00 0.00 0.00 4.63
168 169 1.262417 TGTATGCAAGTGGTCTCGGA 58.738 50.000 0.00 0.00 0.00 4.55
169 170 1.067142 TGTATGCAAGTGGTCTCGGAC 60.067 52.381 0.00 0.00 0.00 4.79
170 171 1.067142 GTATGCAAGTGGTCTCGGACA 60.067 52.381 0.00 0.00 33.68 4.02
171 172 0.615331 ATGCAAGTGGTCTCGGACAT 59.385 50.000 0.00 0.00 33.68 3.06
172 173 0.037326 TGCAAGTGGTCTCGGACATC 60.037 55.000 6.41 0.02 33.68 3.06
173 174 0.037326 GCAAGTGGTCTCGGACATCA 60.037 55.000 6.41 0.00 33.68 3.07
174 175 2.001812 CAAGTGGTCTCGGACATCAG 57.998 55.000 6.41 0.00 33.68 2.90
175 176 0.898320 AAGTGGTCTCGGACATCAGG 59.102 55.000 6.41 0.00 33.68 3.86
176 177 0.972983 AGTGGTCTCGGACATCAGGG 60.973 60.000 6.41 0.00 33.68 4.45
177 178 1.685765 TGGTCTCGGACATCAGGGG 60.686 63.158 6.41 0.00 33.68 4.79
178 179 1.381327 GGTCTCGGACATCAGGGGA 60.381 63.158 6.41 0.00 33.68 4.81
179 180 1.395826 GGTCTCGGACATCAGGGGAG 61.396 65.000 6.41 0.00 33.68 4.30
180 181 0.395862 GTCTCGGACATCAGGGGAGA 60.396 60.000 0.00 0.00 32.09 3.71
181 182 0.558220 TCTCGGACATCAGGGGAGAT 59.442 55.000 0.00 0.00 0.00 2.75
189 190 3.331478 CATCAGGGGAGATGTGCTATC 57.669 52.381 0.00 0.00 40.35 2.08
190 191 2.477104 TCAGGGGAGATGTGCTATCA 57.523 50.000 4.71 0.00 0.00 2.15
191 192 2.981921 TCAGGGGAGATGTGCTATCAT 58.018 47.619 4.71 0.00 0.00 2.45
192 193 2.902486 TCAGGGGAGATGTGCTATCATC 59.098 50.000 8.34 8.34 42.96 2.92
203 204 7.522901 GATGTGCTATCATCTTATGCTGTAG 57.477 40.000 8.89 0.00 40.46 2.74
204 205 6.410942 TGTGCTATCATCTTATGCTGTAGT 57.589 37.500 0.00 0.00 0.00 2.73
205 206 6.820335 TGTGCTATCATCTTATGCTGTAGTT 58.180 36.000 0.00 0.00 0.00 2.24
206 207 7.951591 TGTGCTATCATCTTATGCTGTAGTTA 58.048 34.615 0.00 0.00 0.00 2.24
207 208 8.588472 TGTGCTATCATCTTATGCTGTAGTTAT 58.412 33.333 0.00 0.00 0.00 1.89
208 209 9.429359 GTGCTATCATCTTATGCTGTAGTTATT 57.571 33.333 0.00 0.00 0.00 1.40
221 222 8.958119 TGCTGTAGTTATTAGTGAAATTAGGG 57.042 34.615 0.00 0.00 0.00 3.53
222 223 8.764558 TGCTGTAGTTATTAGTGAAATTAGGGA 58.235 33.333 0.00 0.00 0.00 4.20
223 224 9.262358 GCTGTAGTTATTAGTGAAATTAGGGAG 57.738 37.037 0.00 0.00 0.00 4.30
234 235 8.380742 AGTGAAATTAGGGAGTCTATGAAAGA 57.619 34.615 0.00 0.00 0.00 2.52
235 236 8.997734 AGTGAAATTAGGGAGTCTATGAAAGAT 58.002 33.333 0.00 0.00 36.36 2.40
236 237 9.620259 GTGAAATTAGGGAGTCTATGAAAGATT 57.380 33.333 0.00 0.00 36.36 2.40
240 241 9.981460 AATTAGGGAGTCTATGAAAGATTTTGT 57.019 29.630 0.00 0.00 36.36 2.83
241 242 8.792830 TTAGGGAGTCTATGAAAGATTTTGTG 57.207 34.615 0.00 0.00 36.36 3.33
242 243 7.020827 AGGGAGTCTATGAAAGATTTTGTGA 57.979 36.000 0.00 0.00 36.36 3.58
243 244 7.108847 AGGGAGTCTATGAAAGATTTTGTGAG 58.891 38.462 0.00 0.00 36.36 3.51
244 245 6.881602 GGGAGTCTATGAAAGATTTTGTGAGT 59.118 38.462 0.00 0.00 36.36 3.41
245 246 7.148340 GGGAGTCTATGAAAGATTTTGTGAGTG 60.148 40.741 0.00 0.00 36.36 3.51
246 247 7.138692 AGTCTATGAAAGATTTTGTGAGTGC 57.861 36.000 0.00 0.00 36.36 4.40
247 248 6.939163 AGTCTATGAAAGATTTTGTGAGTGCT 59.061 34.615 0.00 0.00 36.36 4.40
248 249 8.097038 AGTCTATGAAAGATTTTGTGAGTGCTA 58.903 33.333 0.00 0.00 36.36 3.49
249 250 8.386606 GTCTATGAAAGATTTTGTGAGTGCTAG 58.613 37.037 0.00 0.00 36.36 3.42
250 251 8.097038 TCTATGAAAGATTTTGTGAGTGCTAGT 58.903 33.333 0.00 0.00 0.00 2.57
251 252 6.942532 TGAAAGATTTTGTGAGTGCTAGTT 57.057 33.333 0.00 0.00 0.00 2.24
252 253 7.333528 TGAAAGATTTTGTGAGTGCTAGTTT 57.666 32.000 0.00 0.00 0.00 2.66
253 254 7.771183 TGAAAGATTTTGTGAGTGCTAGTTTT 58.229 30.769 0.00 0.00 0.00 2.43
254 255 8.898761 TGAAAGATTTTGTGAGTGCTAGTTTTA 58.101 29.630 0.00 0.00 0.00 1.52
255 256 9.387123 GAAAGATTTTGTGAGTGCTAGTTTTAG 57.613 33.333 0.00 0.00 0.00 1.85
256 257 8.677148 AAGATTTTGTGAGTGCTAGTTTTAGA 57.323 30.769 0.00 0.00 0.00 2.10
257 258 8.854614 AGATTTTGTGAGTGCTAGTTTTAGAT 57.145 30.769 0.00 0.00 0.00 1.98
258 259 9.944376 AGATTTTGTGAGTGCTAGTTTTAGATA 57.056 29.630 0.00 0.00 0.00 1.98
261 262 9.719355 TTTTGTGAGTGCTAGTTTTAGATATGA 57.281 29.630 0.00 0.00 0.00 2.15
262 263 8.932945 TTGTGAGTGCTAGTTTTAGATATGAG 57.067 34.615 0.00 0.00 0.00 2.90
263 264 8.067751 TGTGAGTGCTAGTTTTAGATATGAGT 57.932 34.615 0.00 0.00 0.00 3.41
264 265 7.976175 TGTGAGTGCTAGTTTTAGATATGAGTG 59.024 37.037 0.00 0.00 0.00 3.51
265 266 6.980978 TGAGTGCTAGTTTTAGATATGAGTGC 59.019 38.462 0.00 0.00 0.00 4.40
266 267 6.878317 AGTGCTAGTTTTAGATATGAGTGCA 58.122 36.000 0.00 0.00 0.00 4.57
267 268 6.983307 AGTGCTAGTTTTAGATATGAGTGCAG 59.017 38.462 0.00 0.00 0.00 4.41
268 269 6.201806 GTGCTAGTTTTAGATATGAGTGCAGG 59.798 42.308 0.00 0.00 0.00 4.85
269 270 5.698545 GCTAGTTTTAGATATGAGTGCAGGG 59.301 44.000 0.00 0.00 0.00 4.45
270 271 5.957771 AGTTTTAGATATGAGTGCAGGGA 57.042 39.130 0.00 0.00 0.00 4.20
271 272 5.923204 AGTTTTAGATATGAGTGCAGGGAG 58.077 41.667 0.00 0.00 0.00 4.30
272 273 4.963318 TTTAGATATGAGTGCAGGGAGG 57.037 45.455 0.00 0.00 0.00 4.30
273 274 1.055040 AGATATGAGTGCAGGGAGGC 58.945 55.000 0.00 0.00 0.00 4.70
274 275 0.036022 GATATGAGTGCAGGGAGGCC 59.964 60.000 0.00 0.00 0.00 5.19
275 276 0.695462 ATATGAGTGCAGGGAGGCCA 60.695 55.000 5.01 0.00 0.00 5.36
276 277 0.913934 TATGAGTGCAGGGAGGCCAA 60.914 55.000 5.01 0.00 0.00 4.52
277 278 1.578215 ATGAGTGCAGGGAGGCCAAT 61.578 55.000 5.01 0.00 0.00 3.16
278 279 1.751927 GAGTGCAGGGAGGCCAATG 60.752 63.158 5.01 0.00 0.00 2.82
279 280 3.455469 GTGCAGGGAGGCCAATGC 61.455 66.667 5.01 10.12 37.97 3.56
280 281 3.664888 TGCAGGGAGGCCAATGCT 61.665 61.111 18.39 0.00 38.20 3.79
281 282 3.145551 GCAGGGAGGCCAATGCTG 61.146 66.667 5.01 0.00 35.68 4.41
282 283 2.679092 CAGGGAGGCCAATGCTGA 59.321 61.111 5.01 0.00 37.74 4.26
283 284 1.000521 CAGGGAGGCCAATGCTGAA 60.001 57.895 5.01 0.00 37.74 3.02
284 285 1.035932 CAGGGAGGCCAATGCTGAAG 61.036 60.000 5.01 0.00 37.74 3.02
285 286 2.421399 GGGAGGCCAATGCTGAAGC 61.421 63.158 5.01 0.00 42.50 3.86
286 287 1.379576 GGAGGCCAATGCTGAAGCT 60.380 57.895 5.01 0.00 42.66 3.74
287 288 1.382692 GGAGGCCAATGCTGAAGCTC 61.383 60.000 5.01 0.00 42.66 4.09
288 289 0.679002 GAGGCCAATGCTGAAGCTCA 60.679 55.000 5.01 0.00 42.66 4.26
289 290 0.033405 AGGCCAATGCTGAAGCTCAT 60.033 50.000 5.01 0.00 42.66 2.90
290 291 0.102481 GGCCAATGCTGAAGCTCATG 59.898 55.000 0.00 0.00 42.66 3.07
291 292 0.527817 GCCAATGCTGAAGCTCATGC 60.528 55.000 3.61 0.00 42.66 4.06
292 293 0.102481 CCAATGCTGAAGCTCATGCC 59.898 55.000 3.61 0.00 42.66 4.40
293 294 0.815095 CAATGCTGAAGCTCATGCCA 59.185 50.000 3.61 0.00 42.66 4.92
294 295 1.409064 CAATGCTGAAGCTCATGCCAT 59.591 47.619 3.61 0.00 42.66 4.40
295 296 1.776662 ATGCTGAAGCTCATGCCATT 58.223 45.000 3.61 0.00 42.66 3.16
296 297 0.815095 TGCTGAAGCTCATGCCATTG 59.185 50.000 3.61 0.00 42.66 2.82
297 298 0.527817 GCTGAAGCTCATGCCATTGC 60.528 55.000 0.00 0.00 40.80 3.56
298 299 3.157385 GCTGAAGCTCATGCCATTGCA 62.157 52.381 0.00 0.00 44.83 4.08
299 300 4.607722 GCTGAAGCTCATGCCATTGCAA 62.608 50.000 0.00 0.00 44.28 4.08
320 321 4.937193 CTGCTTCAGCTCTCCCTG 57.063 61.111 0.00 0.00 42.66 4.45
321 322 1.449956 CTGCTTCAGCTCTCCCTGC 60.450 63.158 0.00 0.00 42.66 4.85
322 323 1.901654 CTGCTTCAGCTCTCCCTGCT 61.902 60.000 0.00 0.00 42.66 4.24
327 328 3.073735 AGCTCTCCCTGCTGGTCG 61.074 66.667 9.00 0.00 39.56 4.79
328 329 4.828925 GCTCTCCCTGCTGGTCGC 62.829 72.222 9.00 1.86 39.77 5.19
329 330 4.154347 CTCTCCCTGCTGGTCGCC 62.154 72.222 9.00 0.00 38.05 5.54
345 346 2.911143 CCGCTTGTGGCTAGGGAT 59.089 61.111 0.00 0.00 39.13 3.85
346 347 1.227674 CCGCTTGTGGCTAGGGATC 60.228 63.158 0.00 0.00 39.13 3.36
347 348 1.227674 CGCTTGTGGCTAGGGATCC 60.228 63.158 1.92 1.92 39.13 3.36
348 349 1.690219 CGCTTGTGGCTAGGGATCCT 61.690 60.000 12.58 0.00 39.13 3.24
349 350 1.424638 GCTTGTGGCTAGGGATCCTA 58.575 55.000 12.58 1.28 38.06 2.94
350 351 1.070914 GCTTGTGGCTAGGGATCCTAC 59.929 57.143 12.58 0.00 38.06 3.18
351 352 1.694696 CTTGTGGCTAGGGATCCTACC 59.305 57.143 12.58 8.68 34.61 3.18
352 353 0.469331 TGTGGCTAGGGATCCTACCG 60.469 60.000 12.58 0.00 34.61 4.02
353 354 0.178970 GTGGCTAGGGATCCTACCGA 60.179 60.000 12.58 0.00 34.61 4.69
354 355 0.559205 TGGCTAGGGATCCTACCGAA 59.441 55.000 12.58 0.00 34.61 4.30
355 356 0.967662 GGCTAGGGATCCTACCGAAC 59.032 60.000 12.58 0.00 34.61 3.95
356 357 1.700955 GCTAGGGATCCTACCGAACA 58.299 55.000 12.58 0.00 34.61 3.18
357 358 2.249139 GCTAGGGATCCTACCGAACAT 58.751 52.381 12.58 0.00 34.61 2.71
358 359 2.231721 GCTAGGGATCCTACCGAACATC 59.768 54.545 12.58 0.00 34.61 3.06
359 360 2.471815 AGGGATCCTACCGAACATCA 57.528 50.000 12.58 0.00 28.47 3.07
360 361 2.040178 AGGGATCCTACCGAACATCAC 58.960 52.381 12.58 0.00 28.47 3.06
361 362 2.040178 GGGATCCTACCGAACATCACT 58.960 52.381 12.58 0.00 0.00 3.41
362 363 2.434702 GGGATCCTACCGAACATCACTT 59.565 50.000 12.58 0.00 0.00 3.16
363 364 3.458189 GGATCCTACCGAACATCACTTG 58.542 50.000 3.84 0.00 0.00 3.16
364 365 3.118738 GGATCCTACCGAACATCACTTGT 60.119 47.826 3.84 0.00 41.53 3.16
365 366 4.098960 GGATCCTACCGAACATCACTTGTA 59.901 45.833 3.84 0.00 37.68 2.41
366 367 5.221461 GGATCCTACCGAACATCACTTGTAT 60.221 44.000 3.84 0.00 37.68 2.29
367 368 5.670792 TCCTACCGAACATCACTTGTATT 57.329 39.130 0.00 0.00 37.68 1.89
368 369 5.657474 TCCTACCGAACATCACTTGTATTC 58.343 41.667 0.00 0.00 37.68 1.75
369 370 4.809426 CCTACCGAACATCACTTGTATTCC 59.191 45.833 0.00 0.00 37.68 3.01
370 371 4.553330 ACCGAACATCACTTGTATTCCT 57.447 40.909 0.00 0.00 37.68 3.36
371 372 4.906618 ACCGAACATCACTTGTATTCCTT 58.093 39.130 0.00 0.00 37.68 3.36
372 373 4.935808 ACCGAACATCACTTGTATTCCTTC 59.064 41.667 0.00 0.00 37.68 3.46
373 374 5.178797 CCGAACATCACTTGTATTCCTTCT 58.821 41.667 0.00 0.00 37.68 2.85
374 375 5.063944 CCGAACATCACTTGTATTCCTTCTG 59.936 44.000 0.00 0.00 37.68 3.02
375 376 5.639506 CGAACATCACTTGTATTCCTTCTGT 59.360 40.000 0.00 0.00 37.68 3.41
376 377 6.401474 CGAACATCACTTGTATTCCTTCTGTG 60.401 42.308 0.00 0.00 37.68 3.66
377 378 5.869579 ACATCACTTGTATTCCTTCTGTGT 58.130 37.500 0.00 0.00 36.57 3.72
378 379 6.299141 ACATCACTTGTATTCCTTCTGTGTT 58.701 36.000 0.00 0.00 36.57 3.32
379 380 7.450074 ACATCACTTGTATTCCTTCTGTGTTA 58.550 34.615 0.00 0.00 36.57 2.41
380 381 8.103305 ACATCACTTGTATTCCTTCTGTGTTAT 58.897 33.333 0.00 0.00 36.57 1.89
381 382 8.607459 CATCACTTGTATTCCTTCTGTGTTATC 58.393 37.037 0.00 0.00 0.00 1.75
382 383 7.907389 TCACTTGTATTCCTTCTGTGTTATCT 58.093 34.615 0.00 0.00 0.00 1.98
383 384 8.375506 TCACTTGTATTCCTTCTGTGTTATCTT 58.624 33.333 0.00 0.00 0.00 2.40
384 385 9.003658 CACTTGTATTCCTTCTGTGTTATCTTT 57.996 33.333 0.00 0.00 0.00 2.52
385 386 9.003658 ACTTGTATTCCTTCTGTGTTATCTTTG 57.996 33.333 0.00 0.00 0.00 2.77
386 387 7.921786 TGTATTCCTTCTGTGTTATCTTTGG 57.078 36.000 0.00 0.00 0.00 3.28
387 388 7.685481 TGTATTCCTTCTGTGTTATCTTTGGA 58.315 34.615 0.00 0.00 0.00 3.53
388 389 8.160765 TGTATTCCTTCTGTGTTATCTTTGGAA 58.839 33.333 0.00 0.00 35.85 3.53
389 390 9.178758 GTATTCCTTCTGTGTTATCTTTGGAAT 57.821 33.333 0.00 0.00 42.28 3.01
391 392 9.753674 ATTCCTTCTGTGTTATCTTTGGAATAA 57.246 29.630 0.00 0.00 39.21 1.40
392 393 9.581289 TTCCTTCTGTGTTATCTTTGGAATAAA 57.419 29.630 0.00 0.00 0.00 1.40
393 394 9.581289 TCCTTCTGTGTTATCTTTGGAATAAAA 57.419 29.630 0.00 0.00 0.00 1.52
397 398 8.966868 TCTGTGTTATCTTTGGAATAAAATCCC 58.033 33.333 0.00 0.00 38.82 3.85
398 399 8.893563 TGTGTTATCTTTGGAATAAAATCCCT 57.106 30.769 0.00 0.00 38.82 4.20
399 400 9.983024 TGTGTTATCTTTGGAATAAAATCCCTA 57.017 29.630 0.00 0.00 38.82 3.53
405 406 8.575649 TCTTTGGAATAAAATCCCTAGTTCAC 57.424 34.615 0.00 0.00 38.82 3.18
406 407 7.614192 TCTTTGGAATAAAATCCCTAGTTCACC 59.386 37.037 0.00 0.00 38.82 4.02
407 408 6.652205 TGGAATAAAATCCCTAGTTCACCT 57.348 37.500 0.00 0.00 38.82 4.00
408 409 7.758820 TGGAATAAAATCCCTAGTTCACCTA 57.241 36.000 0.00 0.00 38.82 3.08
409 410 8.165267 TGGAATAAAATCCCTAGTTCACCTAA 57.835 34.615 0.00 0.00 38.82 2.69
410 411 8.616598 TGGAATAAAATCCCTAGTTCACCTAAA 58.383 33.333 0.00 0.00 38.82 1.85
411 412 9.470399 GGAATAAAATCCCTAGTTCACCTAAAA 57.530 33.333 0.00 0.00 33.05 1.52
435 436 5.904362 AAAAACCACAGGAGAGATATTGC 57.096 39.130 0.00 0.00 0.00 3.56
436 437 3.567478 AACCACAGGAGAGATATTGCC 57.433 47.619 0.00 0.00 0.00 4.52
437 438 2.769209 ACCACAGGAGAGATATTGCCT 58.231 47.619 0.00 0.00 0.00 4.75
438 439 3.118531 ACCACAGGAGAGATATTGCCTT 58.881 45.455 0.00 0.00 0.00 4.35
439 440 3.135530 ACCACAGGAGAGATATTGCCTTC 59.864 47.826 0.00 0.00 0.00 3.46
440 441 3.388308 CACAGGAGAGATATTGCCTTCG 58.612 50.000 0.00 0.00 0.00 3.79
441 442 2.224161 ACAGGAGAGATATTGCCTTCGC 60.224 50.000 0.00 0.00 0.00 4.70
442 443 2.036992 CAGGAGAGATATTGCCTTCGCT 59.963 50.000 0.00 0.00 35.36 4.93
443 444 2.703007 AGGAGAGATATTGCCTTCGCTT 59.297 45.455 0.00 0.00 35.36 4.68
444 445 3.898123 AGGAGAGATATTGCCTTCGCTTA 59.102 43.478 0.00 0.00 35.36 3.09
445 446 4.345257 AGGAGAGATATTGCCTTCGCTTAA 59.655 41.667 0.00 0.00 35.36 1.85
446 447 5.057149 GGAGAGATATTGCCTTCGCTTAAA 58.943 41.667 0.00 0.00 35.36 1.52
447 448 5.527582 GGAGAGATATTGCCTTCGCTTAAAA 59.472 40.000 0.00 0.00 35.36 1.52
448 449 6.038271 GGAGAGATATTGCCTTCGCTTAAAAA 59.962 38.462 0.00 0.00 35.36 1.94
473 474 3.760580 AAGAGAGATATTGCCCTTCCG 57.239 47.619 0.00 0.00 0.00 4.30
474 475 1.346068 AGAGAGATATTGCCCTTCCGC 59.654 52.381 0.00 0.00 0.00 5.54
475 476 0.034059 AGAGATATTGCCCTTCCGCG 59.966 55.000 0.00 0.00 0.00 6.46
476 477 0.249911 GAGATATTGCCCTTCCGCGT 60.250 55.000 4.92 0.00 0.00 6.01
477 478 0.532862 AGATATTGCCCTTCCGCGTG 60.533 55.000 4.92 0.00 0.00 5.34
478 479 2.117941 GATATTGCCCTTCCGCGTGC 62.118 60.000 4.92 0.00 0.00 5.34
493 494 1.373748 GTGCGTCGTCTGCCCTAAA 60.374 57.895 0.00 0.00 0.00 1.85
494 495 1.373748 TGCGTCGTCTGCCCTAAAC 60.374 57.895 0.00 0.00 0.00 2.01
495 496 2.442188 GCGTCGTCTGCCCTAAACG 61.442 63.158 0.00 0.00 37.74 3.60
496 497 2.442188 CGTCGTCTGCCCTAAACGC 61.442 63.158 0.00 0.00 36.40 4.84
497 498 1.080025 GTCGTCTGCCCTAAACGCT 60.080 57.895 0.00 0.00 36.40 5.07
498 499 1.077089 GTCGTCTGCCCTAAACGCTC 61.077 60.000 0.00 0.00 36.40 5.03
499 500 1.215647 CGTCTGCCCTAAACGCTCT 59.784 57.895 0.00 0.00 0.00 4.09
502 503 0.902984 TCTGCCCTAAACGCTCTCCA 60.903 55.000 0.00 0.00 0.00 3.86
503 504 0.036388 CTGCCCTAAACGCTCTCCAA 60.036 55.000 0.00 0.00 0.00 3.53
504 505 0.618458 TGCCCTAAACGCTCTCCAAT 59.382 50.000 0.00 0.00 0.00 3.16
521 522 3.532039 ATTCCCCACCCACCCTCCA 62.532 63.158 0.00 0.00 0.00 3.86
522 523 4.995058 TCCCCACCCACCCTCCAC 62.995 72.222 0.00 0.00 0.00 4.02
526 527 2.941025 CACCCACCCTCCACCCAT 60.941 66.667 0.00 0.00 0.00 4.00
527 528 2.614013 ACCCACCCTCCACCCATC 60.614 66.667 0.00 0.00 0.00 3.51
528 529 3.420482 CCCACCCTCCACCCATCC 61.420 72.222 0.00 0.00 0.00 3.51
529 530 2.613696 CCACCCTCCACCCATCCA 60.614 66.667 0.00 0.00 0.00 3.41
530 531 2.677228 CACCCTCCACCCATCCAC 59.323 66.667 0.00 0.00 0.00 4.02
531 532 2.614013 ACCCTCCACCCATCCACC 60.614 66.667 0.00 0.00 0.00 4.61
532 533 3.797353 CCCTCCACCCATCCACCG 61.797 72.222 0.00 0.00 0.00 4.94
533 534 3.797353 CCTCCACCCATCCACCGG 61.797 72.222 0.00 0.00 0.00 5.28
534 535 4.489771 CTCCACCCATCCACCGGC 62.490 72.222 0.00 0.00 0.00 6.13
560 561 4.436998 CGACCGCCACTGTCCTCC 62.437 72.222 0.00 0.00 0.00 4.30
569 570 2.365105 CTGTCCTCCCCGCCCTTA 60.365 66.667 0.00 0.00 0.00 2.69
570 571 2.365105 TGTCCTCCCCGCCCTTAG 60.365 66.667 0.00 0.00 0.00 2.18
571 572 2.365237 GTCCTCCCCGCCCTTAGT 60.365 66.667 0.00 0.00 0.00 2.24
572 573 1.993948 GTCCTCCCCGCCCTTAGTT 60.994 63.158 0.00 0.00 0.00 2.24
573 574 1.993391 TCCTCCCCGCCCTTAGTTG 60.993 63.158 0.00 0.00 0.00 3.16
575 576 3.699134 CTCCCCGCCCTTAGTTGCC 62.699 68.421 0.00 0.00 0.00 4.52
576 577 3.728373 CCCCGCCCTTAGTTGCCT 61.728 66.667 0.00 0.00 0.00 4.75
577 578 2.355115 CCCGCCCTTAGTTGCCTT 59.645 61.111 0.00 0.00 0.00 4.35
581 582 0.746923 CGCCCTTAGTTGCCTTACCC 60.747 60.000 0.00 0.00 0.00 3.69
582 583 0.330267 GCCCTTAGTTGCCTTACCCA 59.670 55.000 0.00 0.00 0.00 4.51
583 584 1.272258 GCCCTTAGTTGCCTTACCCAA 60.272 52.381 0.00 0.00 0.00 4.12
636 646 2.540265 ATCCATTCTGCAGTCGGATC 57.460 50.000 21.14 0.00 30.51 3.36
651 661 0.470341 GGATCCGAAGAAGGAAGGGG 59.530 60.000 0.00 0.00 44.50 4.79
685 695 2.350804 TCGTTCTGTAGTCGGATTCGAG 59.649 50.000 0.00 0.00 46.91 4.04
709 719 2.238898 AGGAAGGGATCGATTTCGGTTT 59.761 45.455 0.00 0.00 40.29 3.27
710 720 2.354821 GGAAGGGATCGATTTCGGTTTG 59.645 50.000 0.00 0.00 40.29 2.93
719 729 3.369756 TCGATTTCGGTTTGTGTATGAGC 59.630 43.478 0.00 0.00 40.29 4.26
828 838 2.312424 AGAAAACCTCCTCCGTCTCT 57.688 50.000 0.00 0.00 0.00 3.10
839 855 2.014128 CTCCGTCTCTGTCTCCTCTTC 58.986 57.143 0.00 0.00 0.00 2.87
877 898 4.424842 AGGAGGCTATAATAAGCTCAGCT 58.575 43.478 0.00 0.00 42.37 4.24
1053 1082 7.247728 GTGATGTGAGTCTTGTGTTTTGTTAA 58.752 34.615 0.00 0.00 0.00 2.01
1055 1084 8.465999 TGATGTGAGTCTTGTGTTTTGTTAATT 58.534 29.630 0.00 0.00 0.00 1.40
1056 1085 8.633075 ATGTGAGTCTTGTGTTTTGTTAATTG 57.367 30.769 0.00 0.00 0.00 2.32
1057 1086 7.598278 TGTGAGTCTTGTGTTTTGTTAATTGT 58.402 30.769 0.00 0.00 0.00 2.71
1058 1087 8.731605 TGTGAGTCTTGTGTTTTGTTAATTGTA 58.268 29.630 0.00 0.00 0.00 2.41
1088 1139 2.171237 TCCTTGATGAGCATCGAACCAT 59.829 45.455 6.04 0.00 40.63 3.55
1089 1140 2.547211 CCTTGATGAGCATCGAACCATC 59.453 50.000 6.04 10.70 40.63 3.51
1090 1141 2.985957 TGATGAGCATCGAACCATCA 57.014 45.000 14.28 14.28 41.90 3.07
1091 1142 2.830104 TGATGAGCATCGAACCATCAG 58.170 47.619 14.28 0.00 40.04 2.90
1092 1143 2.169144 TGATGAGCATCGAACCATCAGT 59.831 45.455 14.28 0.00 40.04 3.41
1093 1144 2.299993 TGAGCATCGAACCATCAGTC 57.700 50.000 0.00 0.00 38.61 3.51
1094 1145 1.134699 TGAGCATCGAACCATCAGTCC 60.135 52.381 0.00 0.00 38.61 3.85
1095 1146 0.904649 AGCATCGAACCATCAGTCCA 59.095 50.000 0.00 0.00 0.00 4.02
1150 1202 2.740630 GTCGAAGAAAGCAGCTGGCAA 61.741 52.381 17.12 0.00 42.76 4.52
1182 1234 2.180017 GCAAGCTGCCCAACGATG 59.820 61.111 0.00 0.00 37.42 3.84
1183 1235 2.334946 GCAAGCTGCCCAACGATGA 61.335 57.895 0.00 0.00 37.42 2.92
1184 1236 1.503542 CAAGCTGCCCAACGATGAC 59.496 57.895 0.00 0.00 0.00 3.06
1185 1237 1.073025 AAGCTGCCCAACGATGACA 59.927 52.632 0.00 0.00 0.00 3.58
1186 1238 0.322816 AAGCTGCCCAACGATGACAT 60.323 50.000 0.00 0.00 0.00 3.06
1187 1239 1.028330 AGCTGCCCAACGATGACATG 61.028 55.000 0.00 0.00 0.00 3.21
1188 1240 1.430632 CTGCCCAACGATGACATGC 59.569 57.895 0.00 0.00 0.00 4.06
1189 1241 1.002257 TGCCCAACGATGACATGCT 60.002 52.632 0.00 0.00 0.00 3.79
1190 1242 0.251634 TGCCCAACGATGACATGCTA 59.748 50.000 0.00 0.00 0.00 3.49
1191 1243 0.940126 GCCCAACGATGACATGCTAG 59.060 55.000 0.00 0.00 0.00 3.42
1193 1245 0.940126 CCAACGATGACATGCTAGGC 59.060 55.000 0.00 0.00 0.00 3.93
1194 1246 1.655484 CAACGATGACATGCTAGGCA 58.345 50.000 0.00 0.00 44.86 4.75
1195 1247 2.009051 CAACGATGACATGCTAGGCAA 58.991 47.619 0.00 0.00 43.62 4.52
1196 1248 1.945387 ACGATGACATGCTAGGCAAG 58.055 50.000 0.00 0.00 43.62 4.01
1243 1295 3.364441 GCCCAATGACGTGCTGCA 61.364 61.111 0.00 0.00 0.00 4.41
1380 1432 1.169661 TTTGGTGCGAATGAACGGCT 61.170 50.000 0.00 0.00 0.00 5.52
1397 1449 1.999071 GCTTTGTGGCCAACGTGACA 61.999 55.000 7.24 0.00 0.00 3.58
1529 1584 1.849219 GCGACTCAGAAACTAGATGCG 59.151 52.381 0.00 0.00 0.00 4.73
1545 1600 1.136774 GCGGCCGAGTTTGAAATCC 59.863 57.895 33.48 1.41 0.00 3.01
2377 2455 4.024556 AGTCACAAAAGAGTCGCATGAAAG 60.025 41.667 0.00 0.00 0.00 2.62
2421 2499 6.992063 TCTGATCCTCATTTTAAGCAGAAC 57.008 37.500 0.00 0.00 0.00 3.01
2607 2685 0.815734 CGAGTTATCCACGGACCAGT 59.184 55.000 0.00 0.00 0.00 4.00
2641 2719 6.207417 GGATTTGTTGAGGAAGAAGATGACAA 59.793 38.462 0.00 0.00 0.00 3.18
2646 2724 3.071457 TGAGGAAGAAGATGACAACAGCA 59.929 43.478 0.00 0.00 34.60 4.41
2684 2822 3.744942 CCTGATATTCACTTCCGCTCATG 59.255 47.826 0.00 0.00 0.00 3.07
2705 2917 5.152623 TGAGGTCGAGTTGAAGATGAATT 57.847 39.130 0.00 0.00 0.00 2.17
2706 2918 5.171476 TGAGGTCGAGTTGAAGATGAATTC 58.829 41.667 0.00 0.00 0.00 2.17
2723 3006 0.765135 TTCGTTGGAAGGACTCCCCA 60.765 55.000 0.00 0.00 44.69 4.96
2745 3043 6.600822 CCCAATCTCAAAGACTATGTCAATGT 59.399 38.462 0.46 0.00 34.60 2.71
2746 3044 7.201679 CCCAATCTCAAAGACTATGTCAATGTC 60.202 40.741 0.46 1.65 34.60 3.06
2747 3045 7.335171 CCAATCTCAAAGACTATGTCAATGTCA 59.665 37.037 10.05 0.00 34.60 3.58
2748 3046 8.724229 CAATCTCAAAGACTATGTCAATGTCAA 58.276 33.333 10.05 0.00 34.60 3.18
2749 3047 9.458727 AATCTCAAAGACTATGTCAATGTCAAT 57.541 29.630 10.05 0.00 34.60 2.57
2750 3048 8.260270 TCTCAAAGACTATGTCAATGTCAATG 57.740 34.615 10.05 8.37 34.60 2.82
2760 3059 7.821595 ATGTCAATGTCAATGCTATTGTTTG 57.178 32.000 8.19 9.93 34.35 2.93
2797 3096 2.420022 CTCGGCTACCAATTTGTTGGAG 59.580 50.000 13.71 7.88 44.82 3.86
2807 3106 4.687483 CCAATTTGTTGGAGCAACTCATTC 59.313 41.667 0.92 0.00 44.82 2.67
2817 3116 5.106038 TGGAGCAACTCATTCAGCTATTTTG 60.106 40.000 0.00 0.00 37.48 2.44
2819 3118 3.861689 GCAACTCATTCAGCTATTTTGGC 59.138 43.478 0.00 0.00 0.00 4.52
2858 3827 2.495155 AGCACATCTATGTTGTGGCA 57.505 45.000 6.01 0.00 43.69 4.92
2867 3836 3.689161 TCTATGTTGTGGCATTGCTGTAC 59.311 43.478 8.82 6.46 0.00 2.90
2868 3837 0.590682 TGTTGTGGCATTGCTGTACG 59.409 50.000 8.82 0.00 0.00 3.67
2869 3838 0.591170 GTTGTGGCATTGCTGTACGT 59.409 50.000 8.82 0.00 0.00 3.57
2870 3839 0.590682 TTGTGGCATTGCTGTACGTG 59.409 50.000 8.82 0.00 0.00 4.49
2871 3840 1.154225 GTGGCATTGCTGTACGTGC 60.154 57.895 8.82 0.00 36.88 5.34
2872 3841 1.302431 TGGCATTGCTGTACGTGCT 60.302 52.632 8.82 0.00 37.70 4.40
2894 3863 5.344128 GCTTGTGCTTATGTTGAATTCAGTG 59.656 40.000 8.41 0.00 36.03 3.66
2968 3945 0.320421 GAGCCACGGCACTCTGTTTA 60.320 55.000 11.35 0.00 44.88 2.01
3040 4017 3.138798 GTGGTAGCGGCGAGGAGA 61.139 66.667 12.98 0.00 0.00 3.71
3131 4113 0.462759 AGCGGCTCTGTAGATTTGCC 60.463 55.000 0.00 0.00 40.14 4.52
3162 4156 3.810386 CAGTTCATCATCATCCTCTGCAG 59.190 47.826 7.63 7.63 0.00 4.41
3165 4159 4.498894 TCATCATCATCCTCTGCAGTTT 57.501 40.909 14.67 0.00 0.00 2.66
3231 4225 5.122239 TCACCGAAAATACAAAGCATCTCAG 59.878 40.000 0.00 0.00 0.00 3.35
3293 4295 1.346395 ACCATTGCTACCGTCAGAACA 59.654 47.619 0.00 0.00 0.00 3.18
3301 4303 2.733218 CGTCAGAACAAGCCGCGA 60.733 61.111 8.23 0.00 0.00 5.87
3305 4307 4.314440 AGAACAAGCCGCGAGCCA 62.314 61.111 8.23 0.00 45.47 4.75
3325 4335 3.371063 GTCGTCGCTCCCCTGTCA 61.371 66.667 0.00 0.00 0.00 3.58
3352 4362 1.461127 GCTTGACCTTGTCGATGACAC 59.539 52.381 0.00 0.00 42.60 3.67
3375 4385 1.195448 GTGAAGTCTTCATGCACGTGG 59.805 52.381 18.08 0.08 42.47 4.94
3376 4386 1.069978 TGAAGTCTTCATGCACGTGGA 59.930 47.619 18.88 16.39 34.08 4.02
3394 4404 0.618458 GACATAAGGACCAGTGCCCA 59.382 55.000 0.00 0.00 0.00 5.36
3400 4410 3.640407 GACCAGTGCCCAGGAGCA 61.640 66.667 0.00 0.00 41.46 4.26
3439 4451 1.135046 CCGCATAGATCTGAAGCACG 58.865 55.000 5.18 0.71 0.00 5.34
3474 4486 5.045359 TCTCACCACATGATGAGAAATCCTT 60.045 40.000 19.71 0.00 46.47 3.36
3475 4487 5.188434 TCACCACATGATGAGAAATCCTTC 58.812 41.667 0.00 0.00 29.99 3.46
3476 4488 4.945543 CACCACATGATGAGAAATCCTTCA 59.054 41.667 0.00 0.00 33.64 3.02
3479 4491 5.066117 CCACATGATGAGAAATCCTTCACTG 59.934 44.000 0.00 0.00 33.64 3.66
3480 4492 4.639310 ACATGATGAGAAATCCTTCACTGC 59.361 41.667 0.00 0.00 33.64 4.40
3486 4514 3.976701 AATCCTTCACTGCCGCGGG 62.977 63.158 29.38 14.21 0.00 6.13
3538 4566 3.132467 TCAGATAGACGAACTCGAGGAGA 59.868 47.826 18.41 0.00 43.02 3.71
3552 4580 3.055819 TCGAGGAGAATTGGAGTTTGGAG 60.056 47.826 0.00 0.00 0.00 3.86
3570 4598 3.322254 TGGAGGACAAACTCAGAGAAGAC 59.678 47.826 3.79 0.00 39.27 3.01
3571 4599 3.322254 GGAGGACAAACTCAGAGAAGACA 59.678 47.826 3.79 0.00 39.27 3.41
3573 4601 3.706594 AGGACAAACTCAGAGAAGACACA 59.293 43.478 3.79 0.00 0.00 3.72
3577 4605 4.191544 CAAACTCAGAGAAGACACACCAA 58.808 43.478 3.79 0.00 0.00 3.67
3633 4681 2.357034 TTGAGCGAAGGCACCGAC 60.357 61.111 2.78 0.00 43.41 4.79
3646 4694 2.690881 CCGACATTCCCCTCCCCA 60.691 66.667 0.00 0.00 0.00 4.96
3655 4703 3.350163 CCCTCCCCACCAATGGCT 61.350 66.667 0.00 0.00 45.76 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.322906 CCTCCCTTCTTTGTCCCTGC 60.323 60.000 0.00 0.00 0.00 4.85
1 2 1.068121 ACCTCCCTTCTTTGTCCCTG 58.932 55.000 0.00 0.00 0.00 4.45
2 3 2.735259 TACCTCCCTTCTTTGTCCCT 57.265 50.000 0.00 0.00 0.00 4.20
3 4 4.017126 CAAATACCTCCCTTCTTTGTCCC 58.983 47.826 0.00 0.00 0.00 4.46
4 5 4.017126 CCAAATACCTCCCTTCTTTGTCC 58.983 47.826 0.00 0.00 0.00 4.02
5 6 4.017126 CCCAAATACCTCCCTTCTTTGTC 58.983 47.826 0.00 0.00 0.00 3.18
6 7 3.817931 GCCCAAATACCTCCCTTCTTTGT 60.818 47.826 0.00 0.00 0.00 2.83
7 8 2.760650 GCCCAAATACCTCCCTTCTTTG 59.239 50.000 0.00 0.00 0.00 2.77
8 9 2.654896 AGCCCAAATACCTCCCTTCTTT 59.345 45.455 0.00 0.00 0.00 2.52
9 10 2.242452 GAGCCCAAATACCTCCCTTCTT 59.758 50.000 0.00 0.00 0.00 2.52
10 11 1.847088 GAGCCCAAATACCTCCCTTCT 59.153 52.381 0.00 0.00 0.00 2.85
11 12 1.133761 GGAGCCCAAATACCTCCCTTC 60.134 57.143 0.00 0.00 39.36 3.46
12 13 0.927029 GGAGCCCAAATACCTCCCTT 59.073 55.000 0.00 0.00 39.36 3.95
13 14 0.046397 AGGAGCCCAAATACCTCCCT 59.954 55.000 2.49 0.00 44.95 4.20
14 15 0.474614 GAGGAGCCCAAATACCTCCC 59.525 60.000 0.00 0.00 44.95 4.30
15 16 0.106894 CGAGGAGCCCAAATACCTCC 59.893 60.000 0.00 0.00 43.98 4.30
16 17 0.106894 CCGAGGAGCCCAAATACCTC 59.893 60.000 0.00 0.00 43.58 3.85
17 18 1.984288 GCCGAGGAGCCCAAATACCT 61.984 60.000 0.00 0.00 35.29 3.08
18 19 1.526225 GCCGAGGAGCCCAAATACC 60.526 63.158 0.00 0.00 0.00 2.73
19 20 0.815615 CAGCCGAGGAGCCCAAATAC 60.816 60.000 0.00 0.00 0.00 1.89
20 21 1.271840 ACAGCCGAGGAGCCCAAATA 61.272 55.000 0.00 0.00 0.00 1.40
21 22 2.273449 CAGCCGAGGAGCCCAAAT 59.727 61.111 0.00 0.00 0.00 2.32
22 23 3.249189 ACAGCCGAGGAGCCCAAA 61.249 61.111 0.00 0.00 0.00 3.28
23 24 3.706373 GACAGCCGAGGAGCCCAA 61.706 66.667 0.00 0.00 0.00 4.12
25 26 4.459089 GTGACAGCCGAGGAGCCC 62.459 72.222 0.00 0.00 0.00 5.19
26 27 2.456287 AAAGTGACAGCCGAGGAGCC 62.456 60.000 0.00 0.00 0.00 4.70
27 28 0.603975 AAAAGTGACAGCCGAGGAGC 60.604 55.000 0.00 0.00 0.00 4.70
28 29 1.151668 CAAAAGTGACAGCCGAGGAG 58.848 55.000 0.00 0.00 0.00 3.69
29 30 0.756294 TCAAAAGTGACAGCCGAGGA 59.244 50.000 0.00 0.00 0.00 3.71
30 31 1.466167 CATCAAAAGTGACAGCCGAGG 59.534 52.381 0.00 0.00 36.31 4.63
31 32 1.466167 CCATCAAAAGTGACAGCCGAG 59.534 52.381 0.00 0.00 36.31 4.63
32 33 1.202758 ACCATCAAAAGTGACAGCCGA 60.203 47.619 0.00 0.00 36.31 5.54
33 34 1.238439 ACCATCAAAAGTGACAGCCG 58.762 50.000 0.00 0.00 36.31 5.52
34 35 3.383761 CAAACCATCAAAAGTGACAGCC 58.616 45.455 0.00 0.00 36.31 4.85
35 36 3.181476 ACCAAACCATCAAAAGTGACAGC 60.181 43.478 0.00 0.00 36.31 4.40
36 37 4.654091 ACCAAACCATCAAAAGTGACAG 57.346 40.909 0.00 0.00 36.31 3.51
37 38 4.464244 TCAACCAAACCATCAAAAGTGACA 59.536 37.500 0.00 0.00 36.31 3.58
38 39 5.004922 TCAACCAAACCATCAAAAGTGAC 57.995 39.130 0.00 0.00 36.31 3.67
39 40 5.599732 CATCAACCAAACCATCAAAAGTGA 58.400 37.500 0.00 0.00 38.41 3.41
40 41 4.211794 GCATCAACCAAACCATCAAAAGTG 59.788 41.667 0.00 0.00 0.00 3.16
41 42 4.141756 TGCATCAACCAAACCATCAAAAGT 60.142 37.500 0.00 0.00 0.00 2.66
42 43 4.378774 TGCATCAACCAAACCATCAAAAG 58.621 39.130 0.00 0.00 0.00 2.27
43 44 4.378774 CTGCATCAACCAAACCATCAAAA 58.621 39.130 0.00 0.00 0.00 2.44
44 45 3.803021 GCTGCATCAACCAAACCATCAAA 60.803 43.478 0.00 0.00 0.00 2.69
45 46 2.288948 GCTGCATCAACCAAACCATCAA 60.289 45.455 0.00 0.00 0.00 2.57
46 47 1.273048 GCTGCATCAACCAAACCATCA 59.727 47.619 0.00 0.00 0.00 3.07
47 48 1.733389 CGCTGCATCAACCAAACCATC 60.733 52.381 0.00 0.00 0.00 3.51
48 49 0.244450 CGCTGCATCAACCAAACCAT 59.756 50.000 0.00 0.00 0.00 3.55
49 50 0.821301 TCGCTGCATCAACCAAACCA 60.821 50.000 0.00 0.00 0.00 3.67
50 51 0.313672 TTCGCTGCATCAACCAAACC 59.686 50.000 0.00 0.00 0.00 3.27
51 52 2.095059 AGATTCGCTGCATCAACCAAAC 60.095 45.455 0.00 0.00 0.00 2.93
52 53 2.095110 CAGATTCGCTGCATCAACCAAA 60.095 45.455 0.00 0.00 37.90 3.28
53 54 1.469703 CAGATTCGCTGCATCAACCAA 59.530 47.619 0.00 0.00 37.90 3.67
54 55 1.089112 CAGATTCGCTGCATCAACCA 58.911 50.000 0.00 0.00 37.90 3.67
55 56 0.379669 CCAGATTCGCTGCATCAACC 59.620 55.000 0.00 0.00 43.50 3.77
56 57 1.372582 TCCAGATTCGCTGCATCAAC 58.627 50.000 0.00 0.00 43.50 3.18
57 58 2.011947 CTTCCAGATTCGCTGCATCAA 58.988 47.619 0.00 0.00 43.50 2.57
58 59 1.660167 CTTCCAGATTCGCTGCATCA 58.340 50.000 0.00 0.00 43.50 3.07
59 60 0.307146 GCTTCCAGATTCGCTGCATC 59.693 55.000 0.00 0.00 43.50 3.91
60 61 0.393402 TGCTTCCAGATTCGCTGCAT 60.393 50.000 0.00 0.00 43.50 3.96
61 62 1.003476 TGCTTCCAGATTCGCTGCA 60.003 52.632 0.00 0.00 43.50 4.41
62 63 1.023513 AGTGCTTCCAGATTCGCTGC 61.024 55.000 0.00 0.00 43.50 5.25
63 64 1.129998 CAAGTGCTTCCAGATTCGCTG 59.870 52.381 0.00 0.00 44.49 5.18
64 65 1.446907 CAAGTGCTTCCAGATTCGCT 58.553 50.000 0.00 0.00 0.00 4.93
65 66 0.179179 GCAAGTGCTTCCAGATTCGC 60.179 55.000 0.00 0.00 38.21 4.70
66 67 0.095935 CGCAAGTGCTTCCAGATTCG 59.904 55.000 1.21 0.00 39.32 3.34
67 68 3.984292 CGCAAGTGCTTCCAGATTC 57.016 52.632 1.21 0.00 39.32 2.52
82 83 3.948961 TAATGCCTCGCTGCACGCA 62.949 57.895 7.58 7.58 45.48 5.24
83 84 3.160557 CTAATGCCTCGCTGCACGC 62.161 63.158 0.00 0.00 45.48 5.34
84 85 3.009140 CTAATGCCTCGCTGCACG 58.991 61.111 0.00 2.79 45.48 5.34
85 86 1.770085 GAGCTAATGCCTCGCTGCAC 61.770 60.000 0.00 0.00 45.48 4.57
86 87 1.522355 GAGCTAATGCCTCGCTGCA 60.522 57.895 0.00 1.13 46.94 4.41
87 88 1.227497 AGAGCTAATGCCTCGCTGC 60.227 57.895 0.00 0.00 40.80 5.25
88 89 0.879400 CCAGAGCTAATGCCTCGCTG 60.879 60.000 0.00 0.00 40.80 5.18
89 90 1.445095 CCAGAGCTAATGCCTCGCT 59.555 57.895 0.00 0.00 40.80 4.93
90 91 2.250237 GCCAGAGCTAATGCCTCGC 61.250 63.158 0.00 0.00 40.80 5.03
91 92 0.462581 TTGCCAGAGCTAATGCCTCG 60.463 55.000 0.00 0.00 40.80 4.63
92 93 1.674962 CTTTGCCAGAGCTAATGCCTC 59.325 52.381 0.00 0.00 40.80 4.70
93 94 1.684248 CCTTTGCCAGAGCTAATGCCT 60.684 52.381 0.00 0.00 40.80 4.75
94 95 0.743097 CCTTTGCCAGAGCTAATGCC 59.257 55.000 0.00 0.00 40.80 4.40
95 96 1.403323 GTCCTTTGCCAGAGCTAATGC 59.597 52.381 0.00 0.00 40.80 3.56
96 97 2.019984 GGTCCTTTGCCAGAGCTAATG 58.980 52.381 0.00 0.00 40.80 1.90
97 98 1.918957 AGGTCCTTTGCCAGAGCTAAT 59.081 47.619 0.00 0.00 38.99 1.73
98 99 1.279271 GAGGTCCTTTGCCAGAGCTAA 59.721 52.381 0.00 0.00 40.76 3.09
99 100 0.905357 GAGGTCCTTTGCCAGAGCTA 59.095 55.000 0.00 0.00 40.76 3.32
100 101 1.130054 TGAGGTCCTTTGCCAGAGCT 61.130 55.000 0.00 0.00 43.23 4.09
101 102 0.250901 TTGAGGTCCTTTGCCAGAGC 60.251 55.000 0.00 0.00 40.48 4.09
102 103 2.026449 AGATTGAGGTCCTTTGCCAGAG 60.026 50.000 0.00 0.00 0.00 3.35
103 104 1.988107 AGATTGAGGTCCTTTGCCAGA 59.012 47.619 0.00 0.00 0.00 3.86
104 105 2.363683 GAGATTGAGGTCCTTTGCCAG 58.636 52.381 0.00 0.00 0.00 4.85
105 106 1.004745 GGAGATTGAGGTCCTTTGCCA 59.995 52.381 0.00 0.00 0.00 4.92
106 107 1.683319 GGGAGATTGAGGTCCTTTGCC 60.683 57.143 0.00 0.00 32.90 4.52
107 108 1.004745 TGGGAGATTGAGGTCCTTTGC 59.995 52.381 0.00 0.00 32.90 3.68
108 109 2.040278 TGTGGGAGATTGAGGTCCTTTG 59.960 50.000 0.00 0.00 32.90 2.77
109 110 2.348472 TGTGGGAGATTGAGGTCCTTT 58.652 47.619 0.00 0.00 32.90 3.11
110 111 2.044793 TGTGGGAGATTGAGGTCCTT 57.955 50.000 0.00 0.00 32.90 3.36
111 112 1.842562 CATGTGGGAGATTGAGGTCCT 59.157 52.381 0.00 0.00 32.90 3.85
112 113 1.561542 ACATGTGGGAGATTGAGGTCC 59.438 52.381 0.00 0.00 0.00 4.46
113 114 2.237143 TCACATGTGGGAGATTGAGGTC 59.763 50.000 25.16 0.00 0.00 3.85
114 115 2.269023 TCACATGTGGGAGATTGAGGT 58.731 47.619 25.16 0.00 0.00 3.85
115 116 3.118149 TGATCACATGTGGGAGATTGAGG 60.118 47.826 25.16 0.00 0.00 3.86
116 117 4.146745 TGATCACATGTGGGAGATTGAG 57.853 45.455 25.16 0.00 0.00 3.02
117 118 4.783560 ATGATCACATGTGGGAGATTGA 57.216 40.909 25.16 3.98 35.21 2.57
118 119 5.001874 CCTATGATCACATGTGGGAGATTG 58.998 45.833 25.16 12.41 37.87 2.67
119 120 4.662179 ACCTATGATCACATGTGGGAGATT 59.338 41.667 25.16 8.71 37.87 2.40
120 121 4.237843 ACCTATGATCACATGTGGGAGAT 58.762 43.478 25.16 11.56 37.87 2.75
121 122 3.657610 ACCTATGATCACATGTGGGAGA 58.342 45.455 25.16 6.71 37.87 3.71
122 123 4.102210 AGAACCTATGATCACATGTGGGAG 59.898 45.833 25.16 14.21 37.87 4.30
123 124 4.040047 AGAACCTATGATCACATGTGGGA 58.960 43.478 25.16 7.89 37.87 4.37
124 125 4.132336 CAGAACCTATGATCACATGTGGG 58.868 47.826 25.16 18.57 37.87 4.61
125 126 5.027293 TCAGAACCTATGATCACATGTGG 57.973 43.478 25.16 10.16 37.87 4.17
126 127 6.541278 ACAATCAGAACCTATGATCACATGTG 59.459 38.462 20.18 20.18 36.38 3.21
127 128 6.656902 ACAATCAGAACCTATGATCACATGT 58.343 36.000 0.00 0.00 36.38 3.21
128 129 8.718734 CATACAATCAGAACCTATGATCACATG 58.281 37.037 0.00 0.00 36.38 3.21
129 130 7.389884 GCATACAATCAGAACCTATGATCACAT 59.610 37.037 0.00 0.00 36.38 3.21
130 131 6.707608 GCATACAATCAGAACCTATGATCACA 59.292 38.462 0.00 0.00 36.38 3.58
131 132 6.707608 TGCATACAATCAGAACCTATGATCAC 59.292 38.462 0.00 0.00 36.38 3.06
132 133 6.829849 TGCATACAATCAGAACCTATGATCA 58.170 36.000 0.00 0.00 36.38 2.92
133 134 7.443575 ACTTGCATACAATCAGAACCTATGATC 59.556 37.037 0.00 0.00 36.38 2.92
134 135 7.228108 CACTTGCATACAATCAGAACCTATGAT 59.772 37.037 0.00 0.00 39.06 2.45
135 136 6.539826 CACTTGCATACAATCAGAACCTATGA 59.460 38.462 0.00 0.00 34.61 2.15
136 137 6.238566 CCACTTGCATACAATCAGAACCTATG 60.239 42.308 0.00 0.00 34.61 2.23
137 138 5.824624 CCACTTGCATACAATCAGAACCTAT 59.175 40.000 0.00 0.00 34.61 2.57
138 139 5.185454 CCACTTGCATACAATCAGAACCTA 58.815 41.667 0.00 0.00 34.61 3.08
139 140 4.012374 CCACTTGCATACAATCAGAACCT 58.988 43.478 0.00 0.00 34.61 3.50
140 141 3.758554 ACCACTTGCATACAATCAGAACC 59.241 43.478 0.00 0.00 34.61 3.62
141 142 4.697352 AGACCACTTGCATACAATCAGAAC 59.303 41.667 0.00 0.00 34.61 3.01
142 143 4.910195 AGACCACTTGCATACAATCAGAA 58.090 39.130 0.00 0.00 34.61 3.02
143 144 4.507710 GAGACCACTTGCATACAATCAGA 58.492 43.478 0.00 0.00 34.61 3.27
144 145 3.308053 CGAGACCACTTGCATACAATCAG 59.692 47.826 0.00 0.00 34.61 2.90
145 146 3.261580 CGAGACCACTTGCATACAATCA 58.738 45.455 0.00 0.00 34.61 2.57
146 147 2.609459 CCGAGACCACTTGCATACAATC 59.391 50.000 0.00 0.00 34.61 2.67
147 148 2.236146 TCCGAGACCACTTGCATACAAT 59.764 45.455 0.00 0.00 34.61 2.71
148 149 1.621317 TCCGAGACCACTTGCATACAA 59.379 47.619 0.00 0.00 0.00 2.41
149 150 1.067142 GTCCGAGACCACTTGCATACA 60.067 52.381 0.00 0.00 0.00 2.29
150 151 1.067142 TGTCCGAGACCACTTGCATAC 60.067 52.381 0.00 0.00 0.00 2.39
151 152 1.262417 TGTCCGAGACCACTTGCATA 58.738 50.000 0.00 0.00 0.00 3.14
152 153 0.615331 ATGTCCGAGACCACTTGCAT 59.385 50.000 0.00 0.00 0.00 3.96
153 154 0.037326 GATGTCCGAGACCACTTGCA 60.037 55.000 2.23 0.00 0.00 4.08
154 155 0.037326 TGATGTCCGAGACCACTTGC 60.037 55.000 2.23 0.00 0.00 4.01
155 156 1.404717 CCTGATGTCCGAGACCACTTG 60.405 57.143 2.23 0.00 0.00 3.16
156 157 0.898320 CCTGATGTCCGAGACCACTT 59.102 55.000 2.23 0.00 0.00 3.16
157 158 0.972983 CCCTGATGTCCGAGACCACT 60.973 60.000 2.23 0.00 0.00 4.00
158 159 1.517832 CCCTGATGTCCGAGACCAC 59.482 63.158 2.23 0.00 0.00 4.16
159 160 1.685765 CCCCTGATGTCCGAGACCA 60.686 63.158 2.23 0.00 0.00 4.02
160 161 1.381327 TCCCCTGATGTCCGAGACC 60.381 63.158 2.23 0.00 0.00 3.85
161 162 0.395862 TCTCCCCTGATGTCCGAGAC 60.396 60.000 0.00 0.00 0.00 3.36
162 163 0.558220 ATCTCCCCTGATGTCCGAGA 59.442 55.000 0.00 0.00 34.29 4.04
163 164 0.678395 CATCTCCCCTGATGTCCGAG 59.322 60.000 0.00 0.00 39.05 4.63
164 165 2.826337 CATCTCCCCTGATGTCCGA 58.174 57.895 0.00 0.00 39.05 4.55
169 170 2.636403 TGATAGCACATCTCCCCTGATG 59.364 50.000 0.00 0.00 46.61 3.07
170 171 2.981921 TGATAGCACATCTCCCCTGAT 58.018 47.619 0.00 0.00 0.00 2.90
171 172 2.477104 TGATAGCACATCTCCCCTGA 57.523 50.000 0.00 0.00 0.00 3.86
172 173 3.331478 GATGATAGCACATCTCCCCTG 57.669 52.381 10.01 0.00 42.09 4.45
179 180 7.095910 ACTACAGCATAAGATGATAGCACATC 58.904 38.462 9.47 9.47 44.65 3.06
180 181 7.002250 ACTACAGCATAAGATGATAGCACAT 57.998 36.000 0.00 0.00 34.60 3.21
181 182 6.410942 ACTACAGCATAAGATGATAGCACA 57.589 37.500 0.00 0.00 34.60 4.57
182 183 8.994429 ATAACTACAGCATAAGATGATAGCAC 57.006 34.615 0.00 0.00 34.60 4.40
195 196 9.561069 CCCTAATTTCACTAATAACTACAGCAT 57.439 33.333 0.00 0.00 0.00 3.79
196 197 8.764558 TCCCTAATTTCACTAATAACTACAGCA 58.235 33.333 0.00 0.00 0.00 4.41
197 198 9.262358 CTCCCTAATTTCACTAATAACTACAGC 57.738 37.037 0.00 0.00 0.00 4.40
208 209 9.488762 TCTTTCATAGACTCCCTAATTTCACTA 57.511 33.333 0.00 0.00 0.00 2.74
209 210 8.380742 TCTTTCATAGACTCCCTAATTTCACT 57.619 34.615 0.00 0.00 0.00 3.41
210 211 9.620259 AATCTTTCATAGACTCCCTAATTTCAC 57.380 33.333 0.00 0.00 35.19 3.18
214 215 9.981460 ACAAAATCTTTCATAGACTCCCTAATT 57.019 29.630 0.00 0.00 35.19 1.40
215 216 9.401058 CACAAAATCTTTCATAGACTCCCTAAT 57.599 33.333 0.00 0.00 35.19 1.73
216 217 8.602424 TCACAAAATCTTTCATAGACTCCCTAA 58.398 33.333 0.00 0.00 35.19 2.69
217 218 8.146053 TCACAAAATCTTTCATAGACTCCCTA 57.854 34.615 0.00 0.00 35.19 3.53
218 219 7.020827 TCACAAAATCTTTCATAGACTCCCT 57.979 36.000 0.00 0.00 35.19 4.20
219 220 6.881602 ACTCACAAAATCTTTCATAGACTCCC 59.118 38.462 0.00 0.00 35.19 4.30
220 221 7.625185 GCACTCACAAAATCTTTCATAGACTCC 60.625 40.741 0.00 0.00 35.19 3.85
221 222 7.118971 AGCACTCACAAAATCTTTCATAGACTC 59.881 37.037 0.00 0.00 35.19 3.36
222 223 6.939163 AGCACTCACAAAATCTTTCATAGACT 59.061 34.615 0.00 0.00 35.19 3.24
223 224 7.138692 AGCACTCACAAAATCTTTCATAGAC 57.861 36.000 0.00 0.00 35.19 2.59
224 225 8.097038 ACTAGCACTCACAAAATCTTTCATAGA 58.903 33.333 0.00 0.00 37.28 1.98
225 226 8.261492 ACTAGCACTCACAAAATCTTTCATAG 57.739 34.615 0.00 0.00 0.00 2.23
226 227 8.621532 AACTAGCACTCACAAAATCTTTCATA 57.378 30.769 0.00 0.00 0.00 2.15
227 228 7.516198 AACTAGCACTCACAAAATCTTTCAT 57.484 32.000 0.00 0.00 0.00 2.57
228 229 6.942532 AACTAGCACTCACAAAATCTTTCA 57.057 33.333 0.00 0.00 0.00 2.69
229 230 9.387123 CTAAAACTAGCACTCACAAAATCTTTC 57.613 33.333 0.00 0.00 0.00 2.62
230 231 9.120538 TCTAAAACTAGCACTCACAAAATCTTT 57.879 29.630 0.00 0.00 0.00 2.52
231 232 8.677148 TCTAAAACTAGCACTCACAAAATCTT 57.323 30.769 0.00 0.00 0.00 2.40
232 233 8.854614 ATCTAAAACTAGCACTCACAAAATCT 57.145 30.769 0.00 0.00 0.00 2.40
235 236 9.719355 TCATATCTAAAACTAGCACTCACAAAA 57.281 29.630 0.00 0.00 0.00 2.44
236 237 9.371136 CTCATATCTAAAACTAGCACTCACAAA 57.629 33.333 0.00 0.00 0.00 2.83
237 238 8.531982 ACTCATATCTAAAACTAGCACTCACAA 58.468 33.333 0.00 0.00 0.00 3.33
238 239 7.976175 CACTCATATCTAAAACTAGCACTCACA 59.024 37.037 0.00 0.00 0.00 3.58
239 240 7.043059 GCACTCATATCTAAAACTAGCACTCAC 60.043 40.741 0.00 0.00 0.00 3.51
240 241 6.980978 GCACTCATATCTAAAACTAGCACTCA 59.019 38.462 0.00 0.00 0.00 3.41
241 242 6.980978 TGCACTCATATCTAAAACTAGCACTC 59.019 38.462 0.00 0.00 0.00 3.51
242 243 6.878317 TGCACTCATATCTAAAACTAGCACT 58.122 36.000 0.00 0.00 0.00 4.40
243 244 6.201806 CCTGCACTCATATCTAAAACTAGCAC 59.798 42.308 0.00 0.00 0.00 4.40
244 245 6.283694 CCTGCACTCATATCTAAAACTAGCA 58.716 40.000 0.00 0.00 0.00 3.49
245 246 5.698545 CCCTGCACTCATATCTAAAACTAGC 59.301 44.000 0.00 0.00 0.00 3.42
246 247 7.055667 TCCCTGCACTCATATCTAAAACTAG 57.944 40.000 0.00 0.00 0.00 2.57
247 248 6.042093 CCTCCCTGCACTCATATCTAAAACTA 59.958 42.308 0.00 0.00 0.00 2.24
248 249 5.163258 CCTCCCTGCACTCATATCTAAAACT 60.163 44.000 0.00 0.00 0.00 2.66
249 250 5.059833 CCTCCCTGCACTCATATCTAAAAC 58.940 45.833 0.00 0.00 0.00 2.43
250 251 4.444876 GCCTCCCTGCACTCATATCTAAAA 60.445 45.833 0.00 0.00 0.00 1.52
251 252 3.071602 GCCTCCCTGCACTCATATCTAAA 59.928 47.826 0.00 0.00 0.00 1.85
252 253 2.634940 GCCTCCCTGCACTCATATCTAA 59.365 50.000 0.00 0.00 0.00 2.10
253 254 2.251818 GCCTCCCTGCACTCATATCTA 58.748 52.381 0.00 0.00 0.00 1.98
254 255 1.055040 GCCTCCCTGCACTCATATCT 58.945 55.000 0.00 0.00 0.00 1.98
255 256 0.036022 GGCCTCCCTGCACTCATATC 59.964 60.000 0.00 0.00 0.00 1.63
256 257 0.695462 TGGCCTCCCTGCACTCATAT 60.695 55.000 3.32 0.00 0.00 1.78
257 258 0.913934 TTGGCCTCCCTGCACTCATA 60.914 55.000 3.32 0.00 0.00 2.15
258 259 1.578215 ATTGGCCTCCCTGCACTCAT 61.578 55.000 3.32 0.00 0.00 2.90
259 260 2.233566 ATTGGCCTCCCTGCACTCA 61.234 57.895 3.32 0.00 0.00 3.41
260 261 1.751927 CATTGGCCTCCCTGCACTC 60.752 63.158 3.32 0.00 0.00 3.51
261 262 2.357836 CATTGGCCTCCCTGCACT 59.642 61.111 3.32 0.00 0.00 4.40
262 263 3.455469 GCATTGGCCTCCCTGCAC 61.455 66.667 3.32 0.00 33.30 4.57
263 264 3.664888 AGCATTGGCCTCCCTGCA 61.665 61.111 17.48 0.00 42.56 4.41
264 265 3.145551 CAGCATTGGCCTCCCTGC 61.146 66.667 3.32 7.80 42.56 4.85
265 266 1.000521 TTCAGCATTGGCCTCCCTG 60.001 57.895 3.32 5.62 42.56 4.45
266 267 1.305623 CTTCAGCATTGGCCTCCCT 59.694 57.895 3.32 0.00 42.56 4.20
267 268 2.421399 GCTTCAGCATTGGCCTCCC 61.421 63.158 3.32 0.00 42.56 4.30
268 269 1.379576 AGCTTCAGCATTGGCCTCC 60.380 57.895 3.32 0.00 45.16 4.30
269 270 0.679002 TGAGCTTCAGCATTGGCCTC 60.679 55.000 3.32 0.00 45.16 4.70
270 271 0.033405 ATGAGCTTCAGCATTGGCCT 60.033 50.000 3.32 0.00 45.16 5.19
271 272 0.102481 CATGAGCTTCAGCATTGGCC 59.898 55.000 0.00 0.00 45.16 5.36
272 273 0.527817 GCATGAGCTTCAGCATTGGC 60.528 55.000 0.00 0.00 45.16 4.52
273 274 0.102481 GGCATGAGCTTCAGCATTGG 59.898 55.000 0.00 0.00 45.16 3.16
274 275 0.815095 TGGCATGAGCTTCAGCATTG 59.185 50.000 0.00 0.00 45.16 2.82
275 276 1.776662 ATGGCATGAGCTTCAGCATT 58.223 45.000 0.00 0.00 45.16 3.56
276 277 1.409064 CAATGGCATGAGCTTCAGCAT 59.591 47.619 0.00 0.00 45.16 3.79
277 278 0.815095 CAATGGCATGAGCTTCAGCA 59.185 50.000 0.00 0.00 45.16 4.41
278 279 0.527817 GCAATGGCATGAGCTTCAGC 60.528 55.000 15.51 0.00 41.70 4.26
279 280 3.642901 GCAATGGCATGAGCTTCAG 57.357 52.632 15.51 0.00 41.70 3.02
303 304 1.449956 GCAGGGAGAGCTGAAGCAG 60.450 63.158 4.90 0.00 45.16 4.24
304 305 1.917282 AGCAGGGAGAGCTGAAGCA 60.917 57.895 4.90 0.00 45.16 3.91
305 306 2.988800 AGCAGGGAGAGCTGAAGC 59.011 61.111 0.00 0.00 41.61 3.86
310 311 3.073735 CGACCAGCAGGGAGAGCT 61.074 66.667 0.00 0.00 44.62 4.09
329 330 2.370774 TAGGATCCCTAGCCACAAGCG 61.371 57.143 8.55 0.00 40.15 4.68
330 331 1.070914 GTAGGATCCCTAGCCACAAGC 59.929 57.143 8.55 0.00 36.71 4.01
331 332 1.694696 GGTAGGATCCCTAGCCACAAG 59.305 57.143 8.55 0.00 45.66 3.16
332 333 1.802553 GGTAGGATCCCTAGCCACAA 58.197 55.000 8.55 0.00 45.66 3.33
333 334 3.552594 GGTAGGATCCCTAGCCACA 57.447 57.895 8.55 0.00 45.66 4.17
338 339 3.256136 GTGATGTTCGGTAGGATCCCTAG 59.744 52.174 8.55 0.00 36.71 3.02
339 340 3.117246 AGTGATGTTCGGTAGGATCCCTA 60.117 47.826 8.55 0.00 34.61 3.53
340 341 2.040178 GTGATGTTCGGTAGGATCCCT 58.960 52.381 8.55 0.00 37.71 4.20
341 342 2.040178 AGTGATGTTCGGTAGGATCCC 58.960 52.381 8.55 0.00 0.00 3.85
342 343 3.118738 ACAAGTGATGTTCGGTAGGATCC 60.119 47.826 2.48 2.48 40.06 3.36
343 344 4.124851 ACAAGTGATGTTCGGTAGGATC 57.875 45.455 0.00 0.00 40.06 3.36
344 345 5.871396 ATACAAGTGATGTTCGGTAGGAT 57.129 39.130 0.00 0.00 43.63 3.24
345 346 5.394883 GGAATACAAGTGATGTTCGGTAGGA 60.395 44.000 0.00 0.00 43.63 2.94
346 347 4.809426 GGAATACAAGTGATGTTCGGTAGG 59.191 45.833 0.00 0.00 43.63 3.18
347 348 5.661458 AGGAATACAAGTGATGTTCGGTAG 58.339 41.667 0.00 0.00 43.63 3.18
348 349 5.670792 AGGAATACAAGTGATGTTCGGTA 57.329 39.130 0.00 0.00 43.63 4.02
349 350 4.553330 AGGAATACAAGTGATGTTCGGT 57.447 40.909 0.00 0.00 43.63 4.69
350 351 5.063944 CAGAAGGAATACAAGTGATGTTCGG 59.936 44.000 0.00 0.00 43.63 4.30
351 352 5.639506 ACAGAAGGAATACAAGTGATGTTCG 59.360 40.000 0.00 0.00 43.63 3.95
352 353 6.428159 ACACAGAAGGAATACAAGTGATGTTC 59.572 38.462 0.00 0.00 43.63 3.18
353 354 6.299141 ACACAGAAGGAATACAAGTGATGTT 58.701 36.000 0.00 0.00 43.63 2.71
354 355 5.869579 ACACAGAAGGAATACAAGTGATGT 58.130 37.500 0.00 0.00 46.36 3.06
355 356 6.808008 AACACAGAAGGAATACAAGTGATG 57.192 37.500 0.00 0.00 0.00 3.07
356 357 8.543774 AGATAACACAGAAGGAATACAAGTGAT 58.456 33.333 0.00 0.00 0.00 3.06
357 358 7.907389 AGATAACACAGAAGGAATACAAGTGA 58.093 34.615 0.00 0.00 0.00 3.41
358 359 8.553459 AAGATAACACAGAAGGAATACAAGTG 57.447 34.615 0.00 0.00 0.00 3.16
359 360 9.003658 CAAAGATAACACAGAAGGAATACAAGT 57.996 33.333 0.00 0.00 0.00 3.16
360 361 8.454106 CCAAAGATAACACAGAAGGAATACAAG 58.546 37.037 0.00 0.00 0.00 3.16
361 362 8.160765 TCCAAAGATAACACAGAAGGAATACAA 58.839 33.333 0.00 0.00 0.00 2.41
362 363 7.685481 TCCAAAGATAACACAGAAGGAATACA 58.315 34.615 0.00 0.00 0.00 2.29
363 364 8.561738 TTCCAAAGATAACACAGAAGGAATAC 57.438 34.615 0.00 0.00 0.00 1.89
365 366 9.753674 TTATTCCAAAGATAACACAGAAGGAAT 57.246 29.630 0.00 0.00 43.51 3.01
366 367 9.581289 TTTATTCCAAAGATAACACAGAAGGAA 57.419 29.630 0.00 0.00 37.08 3.36
367 368 9.581289 TTTTATTCCAAAGATAACACAGAAGGA 57.419 29.630 0.00 0.00 0.00 3.36
371 372 8.966868 GGGATTTTATTCCAAAGATAACACAGA 58.033 33.333 0.00 0.00 37.53 3.41
372 373 8.971073 AGGGATTTTATTCCAAAGATAACACAG 58.029 33.333 0.00 0.00 37.53 3.66
373 374 8.893563 AGGGATTTTATTCCAAAGATAACACA 57.106 30.769 0.00 0.00 37.53 3.72
379 380 9.190317 GTGAACTAGGGATTTTATTCCAAAGAT 57.810 33.333 0.00 0.00 37.53 2.40
380 381 7.614192 GGTGAACTAGGGATTTTATTCCAAAGA 59.386 37.037 0.00 0.00 37.53 2.52
381 382 7.615757 AGGTGAACTAGGGATTTTATTCCAAAG 59.384 37.037 0.00 0.00 37.53 2.77
382 383 7.475299 AGGTGAACTAGGGATTTTATTCCAAA 58.525 34.615 0.00 0.00 37.53 3.28
383 384 7.039722 AGGTGAACTAGGGATTTTATTCCAA 57.960 36.000 0.00 0.00 37.53 3.53
384 385 6.652205 AGGTGAACTAGGGATTTTATTCCA 57.348 37.500 0.00 0.00 37.53 3.53
385 386 9.470399 TTTTAGGTGAACTAGGGATTTTATTCC 57.530 33.333 0.00 0.00 32.16 3.01
413 414 4.706962 GGCAATATCTCTCCTGTGGTTTTT 59.293 41.667 0.00 0.00 0.00 1.94
414 415 4.018050 AGGCAATATCTCTCCTGTGGTTTT 60.018 41.667 0.00 0.00 0.00 2.43
415 416 3.525199 AGGCAATATCTCTCCTGTGGTTT 59.475 43.478 0.00 0.00 0.00 3.27
416 417 3.118531 AGGCAATATCTCTCCTGTGGTT 58.881 45.455 0.00 0.00 0.00 3.67
417 418 2.769209 AGGCAATATCTCTCCTGTGGT 58.231 47.619 0.00 0.00 0.00 4.16
418 419 3.737850 GAAGGCAATATCTCTCCTGTGG 58.262 50.000 0.00 0.00 0.00 4.17
419 420 3.388308 CGAAGGCAATATCTCTCCTGTG 58.612 50.000 0.00 0.00 0.00 3.66
420 421 2.224161 GCGAAGGCAATATCTCTCCTGT 60.224 50.000 0.00 0.00 39.62 4.00
421 422 2.036992 AGCGAAGGCAATATCTCTCCTG 59.963 50.000 0.00 0.00 43.41 3.86
422 423 2.324541 AGCGAAGGCAATATCTCTCCT 58.675 47.619 0.00 0.00 43.41 3.69
423 424 2.829741 AGCGAAGGCAATATCTCTCC 57.170 50.000 0.00 0.00 43.41 3.71
424 425 6.604735 TTTTAAGCGAAGGCAATATCTCTC 57.395 37.500 0.00 0.00 43.41 3.20
450 451 4.884164 CGGAAGGGCAATATCTCTCTTTTT 59.116 41.667 0.00 0.00 0.00 1.94
451 452 4.455606 CGGAAGGGCAATATCTCTCTTTT 58.544 43.478 0.00 0.00 0.00 2.27
452 453 3.745797 GCGGAAGGGCAATATCTCTCTTT 60.746 47.826 0.00 0.00 0.00 2.52
453 454 2.224402 GCGGAAGGGCAATATCTCTCTT 60.224 50.000 0.00 0.00 0.00 2.85
454 455 1.346068 GCGGAAGGGCAATATCTCTCT 59.654 52.381 0.00 0.00 0.00 3.10
455 456 1.802069 GCGGAAGGGCAATATCTCTC 58.198 55.000 0.00 0.00 0.00 3.20
456 457 0.034059 CGCGGAAGGGCAATATCTCT 59.966 55.000 0.00 0.00 37.19 3.10
457 458 2.533318 CGCGGAAGGGCAATATCTC 58.467 57.895 0.00 0.00 37.19 2.75
458 459 4.779475 CGCGGAAGGGCAATATCT 57.221 55.556 0.00 0.00 37.19 1.98
475 476 1.373748 TTTAGGGCAGACGACGCAC 60.374 57.895 0.00 0.00 0.00 5.34
476 477 1.373748 GTTTAGGGCAGACGACGCA 60.374 57.895 0.00 0.00 0.00 5.24
477 478 2.442188 CGTTTAGGGCAGACGACGC 61.442 63.158 0.00 0.00 38.99 5.19
478 479 2.442188 GCGTTTAGGGCAGACGACG 61.442 63.158 0.00 0.00 38.99 5.12
479 480 1.077089 GAGCGTTTAGGGCAGACGAC 61.077 60.000 0.00 0.00 38.99 4.34
493 494 1.299976 GTGGGGAATTGGAGAGCGT 59.700 57.895 0.00 0.00 0.00 5.07
494 495 1.452108 GGTGGGGAATTGGAGAGCG 60.452 63.158 0.00 0.00 0.00 5.03
495 496 1.076705 GGGTGGGGAATTGGAGAGC 60.077 63.158 0.00 0.00 0.00 4.09
496 497 0.034089 GTGGGTGGGGAATTGGAGAG 60.034 60.000 0.00 0.00 0.00 3.20
497 498 1.506028 GGTGGGTGGGGAATTGGAGA 61.506 60.000 0.00 0.00 0.00 3.71
498 499 1.000359 GGTGGGTGGGGAATTGGAG 60.000 63.158 0.00 0.00 0.00 3.86
499 500 2.553330 GGGTGGGTGGGGAATTGGA 61.553 63.158 0.00 0.00 0.00 3.53
502 503 2.246126 GGAGGGTGGGTGGGGAATT 61.246 63.158 0.00 0.00 0.00 2.17
503 504 2.617215 GGAGGGTGGGTGGGGAAT 60.617 66.667 0.00 0.00 0.00 3.01
504 505 4.209620 TGGAGGGTGGGTGGGGAA 62.210 66.667 0.00 0.00 0.00 3.97
551 552 3.248248 TAAGGGCGGGGAGGACAGT 62.248 63.158 0.00 0.00 0.00 3.55
552 553 2.365105 TAAGGGCGGGGAGGACAG 60.365 66.667 0.00 0.00 0.00 3.51
554 555 1.993948 AACTAAGGGCGGGGAGGAC 60.994 63.158 0.00 0.00 0.00 3.85
570 571 0.404426 AGGGACTTGGGTAAGGCAAC 59.596 55.000 0.00 0.00 44.15 4.17
571 572 0.696501 GAGGGACTTGGGTAAGGCAA 59.303 55.000 0.00 0.00 44.15 4.52
572 573 1.205460 GGAGGGACTTGGGTAAGGCA 61.205 60.000 0.00 0.00 44.15 4.75
573 574 1.608154 GGAGGGACTTGGGTAAGGC 59.392 63.158 0.00 0.00 41.55 4.35
636 646 1.078143 CTGCCCCTTCCTTCTTCGG 60.078 63.158 0.00 0.00 0.00 4.30
651 661 0.598065 AGAACGAAATTGGCACCTGC 59.402 50.000 0.00 0.00 41.14 4.85
685 695 2.484889 CGAAATCGATCCCTTCCTTCC 58.515 52.381 0.00 0.00 43.02 3.46
709 719 3.423539 AGCTCCTTTTGCTCATACACA 57.576 42.857 0.00 0.00 35.67 3.72
710 720 4.508662 AGTAGCTCCTTTTGCTCATACAC 58.491 43.478 0.00 0.00 41.46 2.90
809 819 1.896465 CAGAGACGGAGGAGGTTTTCT 59.104 52.381 0.00 0.00 0.00 2.52
839 855 1.004277 CTCCTCCGATCCTCCTCCTAG 59.996 61.905 0.00 0.00 0.00 3.02
965 986 0.745128 AAAACAGGACAACGTCGGCA 60.745 50.000 0.00 0.00 32.65 5.69
1076 1105 0.904649 TGGACTGATGGTTCGATGCT 59.095 50.000 0.00 0.00 0.00 3.79
1084 1135 2.990977 TCCGTGATGGACTGATGGT 58.009 52.632 0.00 0.00 43.74 3.55
1093 1144 3.815401 GGGAAATTAGTCATCCGTGATGG 59.185 47.826 12.17 0.00 40.15 3.51
1094 1145 3.815401 GGGGAAATTAGTCATCCGTGATG 59.185 47.826 7.36 7.36 41.00 3.07
1095 1146 3.181443 GGGGGAAATTAGTCATCCGTGAT 60.181 47.826 0.00 0.00 36.60 3.06
1176 1228 2.283298 CTTGCCTAGCATGTCATCGTT 58.717 47.619 0.00 0.00 38.76 3.85
1177 1229 1.945387 CTTGCCTAGCATGTCATCGT 58.055 50.000 0.00 0.00 38.76 3.73
1193 1245 1.236616 TGTCATCGTTGGGCAGCTTG 61.237 55.000 0.00 0.00 0.00 4.01
1194 1246 0.322816 ATGTCATCGTTGGGCAGCTT 60.323 50.000 0.00 0.00 0.00 3.74
1195 1247 1.028330 CATGTCATCGTTGGGCAGCT 61.028 55.000 0.00 0.00 0.00 4.24
1196 1248 1.430632 CATGTCATCGTTGGGCAGC 59.569 57.895 0.00 0.00 0.00 5.25
1197 1249 1.028330 AGCATGTCATCGTTGGGCAG 61.028 55.000 0.00 0.00 0.00 4.85
1198 1250 0.251634 TAGCATGTCATCGTTGGGCA 59.748 50.000 0.00 0.00 0.00 5.36
1199 1251 1.331756 CTTAGCATGTCATCGTTGGGC 59.668 52.381 0.00 0.00 0.00 5.36
1200 1252 1.331756 GCTTAGCATGTCATCGTTGGG 59.668 52.381 0.00 0.00 0.00 4.12
1201 1253 2.009051 TGCTTAGCATGTCATCGTTGG 58.991 47.619 1.39 0.00 31.71 3.77
1202 1254 3.677601 CTTGCTTAGCATGTCATCGTTG 58.322 45.455 8.05 0.00 38.76 4.10
1380 1432 1.999071 GCTGTCACGTTGGCCACAAA 61.999 55.000 3.88 0.00 38.54 2.83
1397 1449 5.013183 AGACCTTGTACTAAGGATGTTTGCT 59.987 40.000 22.90 5.61 39.81 3.91
1529 1584 1.468914 GTCAGGATTTCAAACTCGGCC 59.531 52.381 0.00 0.00 0.00 6.13
1545 1600 7.478322 CAATTAAATGAATCCCTCAGTGTCAG 58.522 38.462 0.00 0.00 37.52 3.51
1588 1643 2.530177 TGAACTGCTTAGCGAAGATCG 58.470 47.619 11.09 0.17 43.89 3.69
1590 1645 4.507710 TCATTGAACTGCTTAGCGAAGAT 58.492 39.130 11.09 0.00 34.25 2.40
2340 2415 2.023673 TGTGACTCCTTTTGGCACTTG 58.976 47.619 1.39 0.00 40.12 3.16
2377 2455 1.305930 GGTTCCCACTTCACATCCGC 61.306 60.000 0.00 0.00 0.00 5.54
2421 2499 4.712476 AGATAGTTAGCCTTGCCAGATTG 58.288 43.478 0.00 0.00 0.00 2.67
2532 2610 1.273327 CAAAATGGGCACACCTTCCTC 59.727 52.381 0.00 0.00 41.11 3.71
2607 2685 2.040278 CCTCAACAAATCCACCTCCTCA 59.960 50.000 0.00 0.00 0.00 3.86
2646 2724 4.814294 GGACAAGCCGTCGCCGAT 62.814 66.667 0.00 0.00 46.42 4.18
2684 2822 4.266502 CGAATTCATCTTCAACTCGACCTC 59.733 45.833 6.22 0.00 0.00 3.85
2723 3006 8.853077 TTGACATTGACATAGTCTTTGAGATT 57.147 30.769 8.64 0.00 33.15 2.40
2745 3043 5.450592 TTGCAGACAAACAATAGCATTGA 57.549 34.783 13.53 0.00 31.21 2.57
2746 3044 6.528014 TTTTGCAGACAAACAATAGCATTG 57.472 33.333 7.16 7.16 45.29 2.82
2747 3045 7.227116 ACATTTTTGCAGACAAACAATAGCATT 59.773 29.630 0.00 0.00 45.29 3.56
2748 3046 6.707161 ACATTTTTGCAGACAAACAATAGCAT 59.293 30.769 0.00 0.00 45.29 3.79
2749 3047 6.047870 ACATTTTTGCAGACAAACAATAGCA 58.952 32.000 0.00 0.00 45.29 3.49
2750 3048 6.529463 ACATTTTTGCAGACAAACAATAGC 57.471 33.333 0.00 0.00 45.29 2.97
2760 3059 2.726241 GCCGAGAAACATTTTTGCAGAC 59.274 45.455 0.00 0.00 0.00 3.51
2797 3096 3.861689 GCCAAAATAGCTGAATGAGTTGC 59.138 43.478 0.00 0.00 0.00 4.17
2807 3106 4.573201 CCATTTCATTGGCCAAAATAGCTG 59.427 41.667 24.71 15.26 0.00 4.24
2819 3118 6.817641 TGTGCTTATTTTAGCCATTTCATTGG 59.182 34.615 0.00 0.00 40.49 3.16
2858 3827 0.238289 GCACAAGCACGTACAGCAAT 59.762 50.000 9.63 0.00 41.58 3.56
2867 3836 2.967459 TCAACATAAGCACAAGCACG 57.033 45.000 0.00 0.00 45.49 5.34
2868 3837 5.221880 TGAATTCAACATAAGCACAAGCAC 58.778 37.500 5.45 0.00 45.49 4.40
2869 3838 5.009911 ACTGAATTCAACATAAGCACAAGCA 59.990 36.000 9.88 0.00 45.49 3.91
2870 3839 5.344128 CACTGAATTCAACATAAGCACAAGC 59.656 40.000 9.88 0.00 42.56 4.01
2871 3840 6.671190 TCACTGAATTCAACATAAGCACAAG 58.329 36.000 9.88 0.00 0.00 3.16
2872 3841 6.631971 TCACTGAATTCAACATAAGCACAA 57.368 33.333 9.88 0.00 0.00 3.33
2943 3918 2.521103 AGTGCCGTGGCTCTCATAT 58.479 52.632 12.84 0.00 40.37 1.78
2968 3945 0.749818 TGTGTTTGTGCGTCCATGGT 60.750 50.000 12.58 0.00 0.00 3.55
3024 4001 2.123854 ATCTCCTCGCCGCTACCA 60.124 61.111 0.00 0.00 0.00 3.25
3034 4011 1.098712 ACTCTCACGGCGATCTCCTC 61.099 60.000 16.62 0.00 0.00 3.71
3040 4017 1.132643 GAACACTACTCTCACGGCGAT 59.867 52.381 16.62 0.00 0.00 4.58
3044 4021 0.879765 ACGGAACACTACTCTCACGG 59.120 55.000 0.00 0.00 0.00 4.94
3076 4053 3.817787 GCATCATTGCGCTGGAGA 58.182 55.556 9.73 1.48 39.49 3.71
3131 4113 5.061933 GGATGATGATGAACTGATCGATTCG 59.938 44.000 0.00 0.00 0.00 3.34
3259 4253 5.852282 AGCAATGGTTATTCGGCTATTTT 57.148 34.783 0.00 0.00 0.00 1.82
3263 4257 3.735591 GGTAGCAATGGTTATTCGGCTA 58.264 45.455 0.00 0.00 30.76 3.93
3264 4258 2.572290 GGTAGCAATGGTTATTCGGCT 58.428 47.619 0.00 0.00 32.34 5.52
3279 4281 1.352156 CGGCTTGTTCTGACGGTAGC 61.352 60.000 0.00 0.00 31.39 3.58
3293 4295 3.127533 GACAATGGCTCGCGGCTT 61.128 61.111 17.07 4.35 41.46 4.35
3301 4303 2.125512 GGAGCGACGACAATGGCT 60.126 61.111 0.00 0.00 38.70 4.75
3305 4307 2.227089 GACAGGGGAGCGACGACAAT 62.227 60.000 0.00 0.00 0.00 2.71
3325 4335 2.348998 CAAGGTCAAGCCGGCTCT 59.651 61.111 32.93 20.23 43.70 4.09
3352 4362 0.798776 GTGCATGAAGACTTCACGGG 59.201 55.000 19.96 13.22 43.48 5.28
3375 4385 0.618458 TGGGCACTGGTCCTTATGTC 59.382 55.000 0.00 0.00 40.42 3.06
3376 4386 0.620556 CTGGGCACTGGTCCTTATGT 59.379 55.000 0.00 0.00 40.42 2.29
3475 4487 3.536917 TAGATCCCCGCGGCAGTG 61.537 66.667 22.85 5.76 0.00 3.66
3476 4488 3.537874 GTAGATCCCCGCGGCAGT 61.538 66.667 22.85 6.90 0.00 4.40
3486 4514 0.935366 CGAAGCTTCGGCGTAGATCC 60.935 60.000 35.58 0.00 46.30 3.36
3487 4515 2.496718 CGAAGCTTCGGCGTAGATC 58.503 57.895 35.58 12.64 46.30 2.75
3552 4580 3.804873 GTGTGTCTTCTCTGAGTTTGTCC 59.195 47.826 4.32 0.00 0.00 4.02
3563 4591 2.808543 GTGGATGTTGGTGTGTCTTCTC 59.191 50.000 0.00 0.00 0.00 2.87
3570 4598 0.961019 CTTGGGTGGATGTTGGTGTG 59.039 55.000 0.00 0.00 0.00 3.82
3571 4599 0.827507 GCTTGGGTGGATGTTGGTGT 60.828 55.000 0.00 0.00 0.00 4.16
3573 4601 1.603455 CGCTTGGGTGGATGTTGGT 60.603 57.895 0.00 0.00 0.00 3.67
3633 4681 0.397535 CATTGGTGGGGAGGGGAATG 60.398 60.000 0.00 0.00 0.00 2.67
3646 4694 2.438434 GCTACGGCAGCCATTGGT 60.438 61.111 13.30 3.34 45.23 3.67
3660 4708 1.910580 CTCCCCTTTGCCTTCCGCTA 61.911 60.000 0.00 0.00 38.78 4.26
3666 4715 2.155197 ATTCGCCTCCCCTTTGCCTT 62.155 55.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.