Multiple sequence alignment - TraesCS6B01G436300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G436300 chr6B 100.000 3263 0 0 1 3263 704030961 704034223 0.000000e+00 6026.0
1 TraesCS6B01G436300 chr6D 92.043 2124 95 31 492 2584 461705617 461707697 0.000000e+00 2918.0
2 TraesCS6B01G436300 chr6D 90.186 1019 56 18 494 1485 461699923 461700924 0.000000e+00 1288.0
3 TraesCS6B01G436300 chr6D 88.672 512 24 18 1 485 461704278 461704782 7.800000e-166 593.0
4 TraesCS6B01G436300 chr6D 84.983 293 24 11 557 842 461697638 461697917 2.480000e-71 279.0
5 TraesCS6B01G436300 chr6D 90.345 145 8 4 13 156 461697099 461697238 5.560000e-43 185.0
6 TraesCS6B01G436300 chr6D 90.541 74 6 1 2525 2598 461709296 461709368 2.680000e-16 97.1
7 TraesCS6B01G436300 chr6A 89.923 2074 112 41 555 2584 608624243 608626263 0.000000e+00 2582.0
8 TraesCS6B01G436300 chr6A 82.018 545 55 15 625 1143 608554031 608554558 1.080000e-114 424.0
9 TraesCS6B01G436300 chr6A 83.544 237 18 8 251 482 608620602 608620822 5.520000e-48 202.0
10 TraesCS6B01G436300 chr6A 85.882 170 9 8 18 177 608572983 608573147 2.010000e-37 167.0
11 TraesCS6B01G436300 chr6A 95.000 60 3 0 2525 2584 608627908 608627967 9.640000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G436300 chr6B 704030961 704034223 3262 False 6026.000000 6026 100.000000 1 3263 1 chr6B.!!$F1 3262
1 TraesCS6B01G436300 chr6D 461697099 461709368 12269 False 893.350000 2918 89.461667 1 2598 6 chr6D.!!$F1 2597
2 TraesCS6B01G436300 chr6A 608620602 608627967 7365 False 959.766667 2582 89.489000 251 2584 3 chr6A.!!$F3 2333
3 TraesCS6B01G436300 chr6A 608554031 608554558 527 False 424.000000 424 82.018000 625 1143 1 chr6A.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 7337 0.388134 GGCTGCTCGTCGTTGACTTA 60.388 55.0 0.00 0.0 0.00 2.24 F
485 11048 0.614812 TCCCCGTTGTAACTTAGGGC 59.385 55.0 8.63 0.0 40.71 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1145 12596 2.043248 TGGAGTAGGAGGTCGGCC 60.043 66.667 0.00 0.0 0.0 6.13 R
2271 13725 0.249657 GGCGGCAGTTAGGATCTGAG 60.250 60.000 3.07 0.0 35.2 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 7207 6.114187 TCATTAAGTTTGCTCTCTTCCTCA 57.886 37.500 0.00 0.00 0.00 3.86
33 7213 1.293498 GCTCTCTTCCTCACGCCAA 59.707 57.895 0.00 0.00 0.00 4.52
42 7222 4.098654 TCTTCCTCACGCCAAAATGAAAAA 59.901 37.500 0.00 0.00 0.00 1.94
43 7223 3.712187 TCCTCACGCCAAAATGAAAAAC 58.288 40.909 0.00 0.00 0.00 2.43
44 7224 3.383185 TCCTCACGCCAAAATGAAAAACT 59.617 39.130 0.00 0.00 0.00 2.66
45 7225 3.490526 CCTCACGCCAAAATGAAAAACTG 59.509 43.478 0.00 0.00 0.00 3.16
47 7227 4.358851 TCACGCCAAAATGAAAAACTGAG 58.641 39.130 0.00 0.00 0.00 3.35
48 7228 3.060339 CACGCCAAAATGAAAAACTGAGC 60.060 43.478 0.00 0.00 0.00 4.26
85 7265 1.725625 GCAATCACACCGTGCGTTG 60.726 57.895 0.00 2.94 34.50 4.10
86 7266 1.938125 CAATCACACCGTGCGTTGA 59.062 52.632 0.00 0.00 33.82 3.18
157 7337 0.388134 GGCTGCTCGTCGTTGACTTA 60.388 55.000 0.00 0.00 0.00 2.24
158 7338 1.630148 GCTGCTCGTCGTTGACTTAT 58.370 50.000 0.00 0.00 0.00 1.73
161 7341 2.324860 TGCTCGTCGTTGACTTATGTG 58.675 47.619 0.00 0.00 0.00 3.21
162 7342 2.287970 TGCTCGTCGTTGACTTATGTGT 60.288 45.455 0.00 0.00 0.00 3.72
164 7344 3.916172 GCTCGTCGTTGACTTATGTGTAA 59.084 43.478 0.00 0.00 0.00 2.41
167 7347 6.201556 TCGTCGTTGACTTATGTGTAAAAC 57.798 37.500 0.00 0.00 0.00 2.43
168 7348 5.747675 TCGTCGTTGACTTATGTGTAAAACA 59.252 36.000 0.00 0.00 44.79 2.83
209 7401 2.185004 AAAACTCCACACCGATCCAG 57.815 50.000 0.00 0.00 0.00 3.86
232 7426 4.264253 CATGGATGCTTCTGGAACTAACA 58.736 43.478 0.00 0.00 0.00 2.41
268 7462 3.010420 GACCTGAAGTTAAGGGACATGC 58.990 50.000 11.28 0.00 39.30 4.06
269 7463 2.375174 ACCTGAAGTTAAGGGACATGCA 59.625 45.455 11.28 0.00 39.30 3.96
273 7467 4.264253 TGAAGTTAAGGGACATGCATGAG 58.736 43.478 32.75 8.19 0.00 2.90
329 10785 6.519761 CGATCTTAACAAAACAGGAAATCGTG 59.480 38.462 1.80 1.80 37.71 4.35
335 10791 3.559238 AAACAGGAAATCGTGTGCATC 57.441 42.857 9.28 0.00 43.25 3.91
336 10792 2.183478 ACAGGAAATCGTGTGCATCA 57.817 45.000 7.87 0.00 42.55 3.07
337 10793 1.806542 ACAGGAAATCGTGTGCATCAC 59.193 47.619 7.87 8.75 42.55 3.06
366 10822 5.215252 AGCTAGTTACTGTCTCTGCAAAA 57.785 39.130 0.00 0.00 0.00 2.44
377 10934 7.217200 ACTGTCTCTGCAAAATGAACTAACTA 58.783 34.615 0.00 0.00 0.00 2.24
435 10998 4.345859 ACAAGTTCCTACGGTCATTGAA 57.654 40.909 0.00 0.00 0.00 2.69
436 10999 4.906618 ACAAGTTCCTACGGTCATTGAAT 58.093 39.130 0.00 0.00 0.00 2.57
470 11033 4.161001 TCACTTCTCCGTTTATTACTCCCC 59.839 45.833 0.00 0.00 0.00 4.81
485 11048 0.614812 TCCCCGTTGTAACTTAGGGC 59.385 55.000 8.63 0.00 40.71 5.19
488 11051 2.285977 CCCGTTGTAACTTAGGGCATC 58.714 52.381 0.00 0.00 35.09 3.91
489 11052 2.093128 CCCGTTGTAACTTAGGGCATCT 60.093 50.000 0.00 0.00 35.09 2.90
490 11053 3.606687 CCGTTGTAACTTAGGGCATCTT 58.393 45.455 0.00 0.00 0.00 2.40
576 11967 1.202200 CGCTCCTAGTTTCTCCTCACG 60.202 57.143 0.00 0.00 0.00 4.35
585 11976 0.820226 TTCTCCTCACGCATCCTCTG 59.180 55.000 0.00 0.00 0.00 3.35
678 12069 2.163010 TCTCGACGGTTATCAAGTGACC 59.837 50.000 0.00 0.00 33.25 4.02
740 12132 2.178912 TCGACAAACTTCACCCCATC 57.821 50.000 0.00 0.00 0.00 3.51
781 12178 4.439563 CCCATGTAAAACCGATAAACAGCC 60.440 45.833 0.00 0.00 0.00 4.85
788 12186 2.496111 ACCGATAAACAGCCGAACAAA 58.504 42.857 0.00 0.00 0.00 2.83
789 12187 2.482721 ACCGATAAACAGCCGAACAAAG 59.517 45.455 0.00 0.00 0.00 2.77
791 12189 3.187637 CCGATAAACAGCCGAACAAAGAA 59.812 43.478 0.00 0.00 0.00 2.52
792 12190 4.142687 CCGATAAACAGCCGAACAAAGAAT 60.143 41.667 0.00 0.00 0.00 2.40
793 12191 5.064198 CCGATAAACAGCCGAACAAAGAATA 59.936 40.000 0.00 0.00 0.00 1.75
805 12203 8.181573 GCCGAACAAAGAATATTCATACAGAAA 58.818 33.333 17.56 0.00 40.22 2.52
806 12204 9.708222 CCGAACAAAGAATATTCATACAGAAAG 57.292 33.333 17.56 1.75 40.22 2.62
820 12222 7.487484 TCATACAGAAAGTTTCAAATGCAACA 58.513 30.769 17.65 0.69 0.00 3.33
835 12237 1.135141 GCAACAGGTGTTTGACTTGCA 60.135 47.619 0.00 0.00 35.01 4.08
897 12299 1.065928 CTCGGCGAGGTAAAGCGAT 59.934 57.895 28.52 0.00 0.00 4.58
985 12415 2.110901 AAGTCCGACGAGCTTCTCTA 57.889 50.000 0.00 0.00 0.00 2.43
986 12416 2.110901 AGTCCGACGAGCTTCTCTAA 57.889 50.000 0.00 0.00 0.00 2.10
1041 12471 2.369860 TCAGATGTGCAAGACCAAGAGT 59.630 45.455 0.00 0.00 0.00 3.24
1136 12587 3.411351 CGGGAACACGAACGGCAG 61.411 66.667 0.00 0.00 35.47 4.85
1293 12747 1.291877 CCGCCACCAAGAACTTCTCG 61.292 60.000 0.00 0.00 0.00 4.04
1776 13230 2.104331 CCTGACGACGAATCCGGG 59.896 66.667 0.00 0.00 40.78 5.73
1779 13233 2.103736 GACGACGAATCCGGGGAC 59.896 66.667 0.00 0.00 40.78 4.46
2205 13659 3.393970 TTCCTGGAGGCGCAGGAG 61.394 66.667 10.83 0.00 46.91 3.69
2269 13723 4.449638 CTCCCAGGTGAGCTCAGA 57.550 61.111 18.89 9.61 0.00 3.27
2270 13724 2.676232 CTCCCAGGTGAGCTCAGAA 58.324 57.895 18.89 0.00 0.00 3.02
2271 13725 0.248843 CTCCCAGGTGAGCTCAGAAC 59.751 60.000 18.89 10.78 0.00 3.01
2293 13747 1.143183 GATCCTAACTGCCGCCGAA 59.857 57.895 0.00 0.00 0.00 4.30
2308 13762 4.160635 GAACGCCGTGGCCGATTG 62.161 66.667 5.08 0.00 37.98 2.67
2459 13923 0.457851 ACAGATGAGTGCTACCGCTC 59.542 55.000 0.00 0.00 46.39 5.03
2560 14024 3.004629 TGCACATGAGTGGTTTGTGATTC 59.995 43.478 0.00 0.00 45.98 2.52
2573 14037 6.183360 TGGTTTGTGATTCAGTTTACACAGAC 60.183 38.462 0.00 0.00 43.02 3.51
2584 14048 2.254546 TACACAGACCCAGCTTTGTG 57.745 50.000 9.31 9.31 44.81 3.33
2612 14120 5.266733 TGAAAAGATTCAGCAGCTTTGTT 57.733 34.783 0.00 0.00 40.59 2.83
2647 14155 2.746362 GAGTGGAAAATGTGAGGCAGAG 59.254 50.000 0.00 0.00 0.00 3.35
2648 14156 2.107204 AGTGGAAAATGTGAGGCAGAGT 59.893 45.455 0.00 0.00 0.00 3.24
2650 14158 2.087646 GGAAAATGTGAGGCAGAGTCC 58.912 52.381 0.00 0.00 0.00 3.85
2651 14159 2.553028 GGAAAATGTGAGGCAGAGTCCA 60.553 50.000 0.00 0.00 0.00 4.02
2652 14160 3.350833 GAAAATGTGAGGCAGAGTCCAT 58.649 45.455 0.00 0.00 0.00 3.41
2653 14161 2.706339 AATGTGAGGCAGAGTCCATC 57.294 50.000 0.00 0.00 0.00 3.51
2654 14162 0.835941 ATGTGAGGCAGAGTCCATCC 59.164 55.000 0.00 0.00 0.00 3.51
2655 14163 0.545071 TGTGAGGCAGAGTCCATCCA 60.545 55.000 0.00 0.00 0.00 3.41
2684 14225 4.202151 ACTGAAACAGAGGATTTTTGGCAC 60.202 41.667 5.76 0.00 35.18 5.01
2691 14232 4.463891 CAGAGGATTTTTGGCACCTGTAAT 59.536 41.667 0.00 0.00 32.53 1.89
2695 14236 1.931635 TTTTGGCACCTGTAATCCCC 58.068 50.000 0.00 0.00 0.00 4.81
2700 14241 1.024579 GCACCTGTAATCCCCACACG 61.025 60.000 0.00 0.00 0.00 4.49
2711 14252 1.422024 TCCCCACACGATTTCCTGAAA 59.578 47.619 0.00 0.00 34.46 2.69
2712 14253 2.158593 TCCCCACACGATTTCCTGAAAA 60.159 45.455 0.00 0.00 33.56 2.29
2736 14277 2.159014 TCATAGGGAAATCGTTGGTCGG 60.159 50.000 0.00 0.00 40.32 4.79
2742 14283 1.356527 AAATCGTTGGTCGGCGCTAC 61.357 55.000 7.64 6.08 40.32 3.58
2791 14332 3.580731 GACTCCAACCTCTCGAAGAAAG 58.419 50.000 0.00 0.00 34.09 2.62
2792 14333 2.300437 ACTCCAACCTCTCGAAGAAAGG 59.700 50.000 0.00 0.00 34.09 3.11
2797 14338 1.416401 ACCTCTCGAAGAAAGGTGCAA 59.584 47.619 7.45 0.00 34.09 4.08
2799 14340 2.224314 CCTCTCGAAGAAAGGTGCAAAC 59.776 50.000 0.00 0.00 34.09 2.93
2800 14341 2.872245 CTCTCGAAGAAAGGTGCAAACA 59.128 45.455 0.00 0.00 34.09 2.83
2806 14347 5.124138 TCGAAGAAAGGTGCAAACAGTTTTA 59.876 36.000 0.00 0.00 0.00 1.52
2807 14348 5.455525 CGAAGAAAGGTGCAAACAGTTTTAG 59.544 40.000 0.00 0.00 0.00 1.85
2808 14349 5.914898 AGAAAGGTGCAAACAGTTTTAGT 57.085 34.783 0.00 0.00 0.00 2.24
2811 14352 3.898482 AGGTGCAAACAGTTTTAGTCCT 58.102 40.909 0.00 0.00 0.00 3.85
2830 14371 1.998315 CTTGCTGGATCTGAGTTGACG 59.002 52.381 0.00 0.00 0.00 4.35
2831 14372 0.390340 TGCTGGATCTGAGTTGACGC 60.390 55.000 0.00 0.00 0.00 5.19
2833 14374 1.135139 GCTGGATCTGAGTTGACGCTA 59.865 52.381 0.00 0.00 0.00 4.26
2836 14377 3.585862 TGGATCTGAGTTGACGCTAAAC 58.414 45.455 0.00 0.00 0.00 2.01
2837 14378 3.258372 TGGATCTGAGTTGACGCTAAACT 59.742 43.478 0.00 0.00 40.54 2.66
2838 14379 3.614616 GGATCTGAGTTGACGCTAAACTG 59.385 47.826 3.02 0.00 37.98 3.16
2840 14381 3.381045 TCTGAGTTGACGCTAAACTGTG 58.619 45.455 3.02 0.00 37.98 3.66
2842 14383 3.787785 TGAGTTGACGCTAAACTGTGAA 58.212 40.909 3.02 0.00 37.98 3.18
2847 14388 5.123344 AGTTGACGCTAAACTGTGAAGTTTT 59.877 36.000 8.97 0.00 41.58 2.43
2848 14389 5.151632 TGACGCTAAACTGTGAAGTTTTC 57.848 39.130 8.97 2.40 41.58 2.29
2851 14392 3.304458 CGCTAAACTGTGAAGTTTTCCCC 60.304 47.826 8.97 0.00 41.58 4.81
2857 14398 4.546674 ACTGTGAAGTTTTCCCCATTTCT 58.453 39.130 0.00 0.00 0.00 2.52
2866 14407 3.378911 TTCCCCATTTCTGCGTTTTTC 57.621 42.857 0.00 0.00 0.00 2.29
2870 14411 2.287909 CCCATTTCTGCGTTTTTCGGAA 60.288 45.455 0.00 0.00 39.75 4.30
2872 14413 3.987220 CCATTTCTGCGTTTTTCGGAATT 59.013 39.130 0.00 0.00 39.75 2.17
2873 14414 4.089923 CCATTTCTGCGTTTTTCGGAATTC 59.910 41.667 0.00 0.00 39.75 2.17
2874 14415 2.981400 TCTGCGTTTTTCGGAATTCC 57.019 45.000 15.01 15.01 39.75 3.01
2875 14416 2.500229 TCTGCGTTTTTCGGAATTCCT 58.500 42.857 22.05 0.00 39.75 3.36
2876 14417 2.225491 TCTGCGTTTTTCGGAATTCCTG 59.775 45.455 22.05 15.09 39.75 3.86
2877 14418 1.335506 TGCGTTTTTCGGAATTCCTGC 60.336 47.619 22.05 13.48 36.86 4.85
2878 14419 1.068541 GCGTTTTTCGGAATTCCTGCT 60.069 47.619 22.05 0.00 40.26 4.24
2881 14422 4.674362 GCGTTTTTCGGAATTCCTGCTAAT 60.674 41.667 22.05 0.00 40.26 1.73
2882 14423 5.028375 CGTTTTTCGGAATTCCTGCTAATC 58.972 41.667 22.05 8.94 35.71 1.75
2883 14424 4.875544 TTTTCGGAATTCCTGCTAATCG 57.124 40.909 22.05 6.53 0.00 3.34
2886 14647 3.717707 TCGGAATTCCTGCTAATCGAAG 58.282 45.455 22.05 2.31 0.00 3.79
2903 14664 2.092838 CGAAGATCCTCGACAACTTTGC 59.907 50.000 8.03 0.00 41.44 3.68
2912 14673 2.486203 TCGACAACTTTGCTGTTTGTGT 59.514 40.909 0.00 0.00 0.00 3.72
2922 14683 7.264221 ACTTTGCTGTTTGTGTTGATGAAATA 58.736 30.769 0.00 0.00 0.00 1.40
2923 14684 7.927629 ACTTTGCTGTTTGTGTTGATGAAATAT 59.072 29.630 0.00 0.00 0.00 1.28
2936 14736 8.626526 TGTTGATGAAATATTGGATCTGTGATG 58.373 33.333 0.00 0.00 0.00 3.07
2944 14744 1.134007 TGGATCTGTGATGTGGATGCC 60.134 52.381 0.00 0.00 0.00 4.40
2958 14759 1.396653 GATGCCTCAGTCCCATTTGG 58.603 55.000 0.00 0.00 0.00 3.28
2977 14789 3.623703 TGGCAATTGCATCATGTCTAGT 58.376 40.909 30.32 0.00 44.36 2.57
2983 14795 1.495878 GCATCATGTCTAGTGAGGCG 58.504 55.000 3.18 0.00 42.42 5.52
2984 14796 1.495878 CATCATGTCTAGTGAGGCGC 58.504 55.000 0.00 0.00 0.00 6.53
2985 14797 1.114627 ATCATGTCTAGTGAGGCGCA 58.885 50.000 10.83 0.00 0.00 6.09
2986 14798 0.457443 TCATGTCTAGTGAGGCGCAG 59.543 55.000 10.83 0.00 0.00 5.18
3003 14815 2.094659 AGCGCAACGACGAATCAGG 61.095 57.895 11.47 0.00 34.06 3.86
3006 14818 0.093026 CGCAACGACGAATCAGGTTC 59.907 55.000 0.00 0.00 34.06 3.62
3008 14820 1.798813 GCAACGACGAATCAGGTTCTT 59.201 47.619 0.00 0.00 34.56 2.52
3011 14823 4.084223 GCAACGACGAATCAGGTTCTTTTA 60.084 41.667 0.00 0.00 34.56 1.52
3013 14825 4.243270 ACGACGAATCAGGTTCTTTTAGG 58.757 43.478 0.00 0.00 34.56 2.69
3014 14826 3.062234 CGACGAATCAGGTTCTTTTAGGC 59.938 47.826 0.00 0.00 34.56 3.93
3015 14827 3.344515 ACGAATCAGGTTCTTTTAGGCC 58.655 45.455 0.00 0.00 34.56 5.19
3035 14848 3.696045 CCACATTTTCTCCACCCACATA 58.304 45.455 0.00 0.00 0.00 2.29
3039 14852 6.379703 CCACATTTTCTCCACCCACATATTTA 59.620 38.462 0.00 0.00 0.00 1.40
3041 14854 8.477256 CACATTTTCTCCACCCACATATTTATT 58.523 33.333 0.00 0.00 0.00 1.40
3042 14855 9.045745 ACATTTTCTCCACCCACATATTTATTT 57.954 29.630 0.00 0.00 0.00 1.40
3043 14856 9.889128 CATTTTCTCCACCCACATATTTATTTT 57.111 29.630 0.00 0.00 0.00 1.82
3044 14857 9.889128 ATTTTCTCCACCCACATATTTATTTTG 57.111 29.630 0.00 0.00 0.00 2.44
3045 14858 8.429237 TTTCTCCACCCACATATTTATTTTGT 57.571 30.769 0.00 0.00 0.00 2.83
3046 14859 7.403312 TCTCCACCCACATATTTATTTTGTG 57.597 36.000 0.00 0.00 40.29 3.33
3069 14882 5.184096 TGTGTGAAAAGGTTCAGCTTTGTTA 59.816 36.000 4.80 0.00 44.44 2.41
3078 14891 5.872617 AGGTTCAGCTTTGTTAACAAAAACC 59.127 36.000 33.72 33.72 44.87 3.27
3079 14892 5.639931 GGTTCAGCTTTGTTAACAAAAACCA 59.360 36.000 34.62 20.47 44.43 3.67
3080 14893 6.315144 GGTTCAGCTTTGTTAACAAAAACCAT 59.685 34.615 34.62 19.93 44.43 3.55
3081 14894 6.900568 TCAGCTTTGTTAACAAAAACCATG 57.099 33.333 28.52 21.64 44.24 3.66
3082 14895 6.402222 TCAGCTTTGTTAACAAAAACCATGT 58.598 32.000 28.52 10.07 44.24 3.21
3083 14896 6.533367 TCAGCTTTGTTAACAAAAACCATGTC 59.467 34.615 28.52 14.63 44.24 3.06
3085 14898 5.276631 GCTTTGTTAACAAAAACCATGTCGG 60.277 40.000 28.52 16.58 44.24 4.79
3092 14927 0.251564 AAAACCATGTCGGGCCATCA 60.252 50.000 4.39 1.61 40.22 3.07
3097 14932 1.378514 ATGTCGGGCCATCAACACC 60.379 57.895 4.39 0.00 0.00 4.16
3098 14933 2.033448 GTCGGGCCATCAACACCA 59.967 61.111 4.39 0.00 0.00 4.17
3102 14937 0.319469 CGGGCCATCAACACCAAAAC 60.319 55.000 4.39 0.00 0.00 2.43
3110 14946 3.781079 TCAACACCAAAACAGAGCAAG 57.219 42.857 0.00 0.00 0.00 4.01
3124 14960 2.282462 CAAGAAGGGGCGTTGGCT 60.282 61.111 0.00 0.00 39.81 4.75
3145 14981 4.491676 CTCTCATTTGCCATTTGGTTCAG 58.508 43.478 0.00 0.00 37.57 3.02
3151 14987 2.726821 TGCCATTTGGTTCAGAGGATC 58.273 47.619 0.00 0.00 37.57 3.36
3153 14989 3.245371 TGCCATTTGGTTCAGAGGATCTT 60.245 43.478 0.00 0.00 40.13 2.40
3157 14993 7.808010 GCCATTTGGTTCAGAGGATCTTTGAT 61.808 42.308 0.00 0.00 40.13 2.57
3185 15021 2.957491 TCCCTGCAACACAAAGTTTG 57.043 45.000 14.13 14.13 38.74 2.93
3186 15022 2.451490 TCCCTGCAACACAAAGTTTGA 58.549 42.857 22.23 0.00 38.74 2.69
3188 15024 3.450457 TCCCTGCAACACAAAGTTTGATT 59.550 39.130 22.23 12.38 38.74 2.57
3189 15025 4.081198 TCCCTGCAACACAAAGTTTGATTT 60.081 37.500 22.23 10.94 38.74 2.17
3190 15026 4.635324 CCCTGCAACACAAAGTTTGATTTT 59.365 37.500 22.23 8.61 38.74 1.82
3191 15027 5.123661 CCCTGCAACACAAAGTTTGATTTTT 59.876 36.000 22.23 6.32 38.74 1.94
3224 15060 4.599047 TTTTTGGCATGGTGTTTCCTAG 57.401 40.909 0.00 0.00 37.07 3.02
3225 15061 2.214376 TTGGCATGGTGTTTCCTAGG 57.786 50.000 0.82 0.82 37.07 3.02
3226 15062 1.367346 TGGCATGGTGTTTCCTAGGA 58.633 50.000 7.62 7.62 37.07 2.94
3227 15063 1.707989 TGGCATGGTGTTTCCTAGGAA 59.292 47.619 20.72 20.72 37.07 3.36
3228 15064 2.109128 TGGCATGGTGTTTCCTAGGAAA 59.891 45.455 29.41 29.41 41.22 3.13
3229 15065 3.161866 GGCATGGTGTTTCCTAGGAAAA 58.838 45.455 33.46 20.95 44.40 2.29
3230 15066 3.769300 GGCATGGTGTTTCCTAGGAAAAT 59.231 43.478 33.46 22.10 44.40 1.82
3232 15068 5.279960 GGCATGGTGTTTCCTAGGAAAATTT 60.280 40.000 33.46 16.63 44.40 1.82
3233 15069 6.230472 GCATGGTGTTTCCTAGGAAAATTTT 58.770 36.000 33.46 17.25 44.40 1.82
3234 15070 6.368791 GCATGGTGTTTCCTAGGAAAATTTTC 59.631 38.462 33.46 22.34 44.40 2.29
3236 15072 7.610580 TGGTGTTTCCTAGGAAAATTTTCAT 57.389 32.000 33.46 24.16 44.40 2.57
3237 15073 8.713708 TGGTGTTTCCTAGGAAAATTTTCATA 57.286 30.769 33.46 23.99 44.40 2.15
3238 15074 8.581578 TGGTGTTTCCTAGGAAAATTTTCATAC 58.418 33.333 33.46 22.40 44.40 2.39
3239 15075 8.803235 GGTGTTTCCTAGGAAAATTTTCATACT 58.197 33.333 33.46 19.00 44.40 2.12
3245 15081 9.581289 TCCTAGGAAAATTTTCATACTTGTTGA 57.419 29.630 27.53 12.12 38.92 3.18
3250 15086 8.764287 GGAAAATTTTCATACTTGTTGAAGGTG 58.236 33.333 27.53 0.00 38.92 4.00
3251 15087 7.713764 AAATTTTCATACTTGTTGAAGGTGC 57.286 32.000 0.00 0.00 34.76 5.01
3252 15088 5.843673 TTTTCATACTTGTTGAAGGTGCA 57.156 34.783 0.00 0.00 34.76 4.57
3253 15089 5.843673 TTTCATACTTGTTGAAGGTGCAA 57.156 34.783 0.00 0.00 34.76 4.08
3254 15090 5.437289 TTCATACTTGTTGAAGGTGCAAG 57.563 39.130 0.00 0.00 43.56 4.01
3255 15091 4.713553 TCATACTTGTTGAAGGTGCAAGA 58.286 39.130 10.01 0.00 41.31 3.02
3256 15092 5.129634 TCATACTTGTTGAAGGTGCAAGAA 58.870 37.500 10.01 0.00 41.31 2.52
3257 15093 5.769662 TCATACTTGTTGAAGGTGCAAGAAT 59.230 36.000 10.01 0.00 41.31 2.40
3258 15094 4.311816 ACTTGTTGAAGGTGCAAGAATG 57.688 40.909 10.01 0.00 41.31 2.67
3260 15096 3.713858 TGTTGAAGGTGCAAGAATGTG 57.286 42.857 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.401246 AGGAAGAGAGCAAACTTAATGAATCT 58.599 34.615 0.00 0.00 0.00 2.40
1 2 7.335422 TGAGGAAGAGAGCAAACTTAATGAATC 59.665 37.037 0.00 0.00 0.00 2.52
2 3 7.120432 GTGAGGAAGAGAGCAAACTTAATGAAT 59.880 37.037 0.00 0.00 0.00 2.57
3 4 6.428159 GTGAGGAAGAGAGCAAACTTAATGAA 59.572 38.462 0.00 0.00 0.00 2.57
5 6 5.163913 CGTGAGGAAGAGAGCAAACTTAATG 60.164 44.000 0.00 0.00 0.00 1.90
27 7207 3.123050 GCTCAGTTTTTCATTTTGGCGT 58.877 40.909 0.00 0.00 0.00 5.68
33 7213 7.267128 TGAGAACATTGCTCAGTTTTTCATTT 58.733 30.769 0.00 0.00 37.46 2.32
42 7222 2.625737 CGGATGAGAACATTGCTCAGT 58.374 47.619 0.00 0.00 44.75 3.41
43 7223 1.329906 GCGGATGAGAACATTGCTCAG 59.670 52.381 0.00 0.00 44.75 3.35
44 7224 1.065926 AGCGGATGAGAACATTGCTCA 60.066 47.619 0.00 0.00 45.52 4.26
45 7225 1.661341 AGCGGATGAGAACATTGCTC 58.339 50.000 0.00 0.00 41.30 4.26
47 7227 2.286654 GCTAAGCGGATGAGAACATTGC 60.287 50.000 0.00 0.00 36.82 3.56
48 7228 2.938451 TGCTAAGCGGATGAGAACATTG 59.062 45.455 0.00 0.00 36.82 2.82
85 7265 7.612633 TGGTTGACCCCAAGTTATTAACTAATC 59.387 37.037 9.43 0.46 36.44 1.75
86 7266 7.471890 TGGTTGACCCCAAGTTATTAACTAAT 58.528 34.615 9.43 0.00 36.44 1.73
168 7348 4.954970 CTTGGCTGCACGGTGGGT 62.955 66.667 10.60 0.00 0.00 4.51
169 7349 4.954970 ACTTGGCTGCACGGTGGG 62.955 66.667 10.60 0.00 0.00 4.61
172 7352 2.332312 TTACCACTTGGCTGCACGGT 62.332 55.000 0.50 2.56 39.32 4.83
173 7353 1.169661 TTTACCACTTGGCTGCACGG 61.170 55.000 0.50 0.00 39.32 4.94
175 7355 1.681264 AGTTTTACCACTTGGCTGCAC 59.319 47.619 0.50 0.00 39.32 4.57
232 7426 1.603739 GGTCTTCAGCCGGCCTTTT 60.604 57.895 26.15 0.00 0.00 2.27
268 7462 1.542472 TGCAAGTTGATGCCACTCATG 59.458 47.619 7.16 0.00 45.83 3.07
269 7463 1.542915 GTGCAAGTTGATGCCACTCAT 59.457 47.619 7.16 0.00 45.83 2.90
273 7467 0.670162 AGTGTGCAAGTTGATGCCAC 59.330 50.000 7.16 5.75 45.83 5.01
329 10785 8.018520 CAGTAACTAGCTATAGTAGTGATGCAC 58.981 40.741 12.73 0.00 41.54 4.57
335 10791 8.984764 CAGAGACAGTAACTAGCTATAGTAGTG 58.015 40.741 12.73 3.19 41.54 2.74
336 10792 7.658575 GCAGAGACAGTAACTAGCTATAGTAGT 59.341 40.741 0.84 5.56 41.54 2.73
337 10793 7.658167 TGCAGAGACAGTAACTAGCTATAGTAG 59.342 40.741 0.84 4.98 41.54 2.57
435 10998 8.672823 AAACGGAGAAGTGAAAGTTTTAGTAT 57.327 30.769 0.00 0.00 0.00 2.12
436 10999 9.768662 ATAAACGGAGAAGTGAAAGTTTTAGTA 57.231 29.630 0.00 0.00 34.29 1.82
470 11033 4.250464 TGAAGATGCCCTAAGTTACAACG 58.750 43.478 0.00 0.00 0.00 4.10
485 11048 6.727824 AGACGACCTTTTTGTATGAAGATG 57.272 37.500 0.00 0.00 0.00 2.90
488 11051 6.539649 TGAAGACGACCTTTTTGTATGAAG 57.460 37.500 0.00 0.00 34.68 3.02
489 11052 6.148811 GGATGAAGACGACCTTTTTGTATGAA 59.851 38.462 0.00 0.00 34.68 2.57
490 11053 5.642063 GGATGAAGACGACCTTTTTGTATGA 59.358 40.000 0.00 0.00 34.68 2.15
585 11976 0.710567 CCATATTGATCTCGACGCGC 59.289 55.000 5.73 0.00 0.00 6.86
588 11979 3.371102 ACCACCATATTGATCTCGACG 57.629 47.619 0.00 0.00 0.00 5.12
678 12069 1.550524 TCTTCCACCTCTTCATCACCG 59.449 52.381 0.00 0.00 0.00 4.94
681 12072 7.890127 ACAAATTTATCTTCCACCTCTTCATCA 59.110 33.333 0.00 0.00 0.00 3.07
721 12112 1.606994 CGATGGGGTGAAGTTTGTCGA 60.607 52.381 0.00 0.00 0.00 4.20
740 12132 0.107654 GGGAGTCAAAGGGATCCACG 60.108 60.000 15.23 0.00 33.24 4.94
793 12191 8.981647 GTTGCATTTGAAACTTTCTGTATGAAT 58.018 29.630 3.22 0.00 34.24 2.57
805 12203 4.470334 AACACCTGTTGCATTTGAAACT 57.530 36.364 3.20 0.00 36.80 2.66
806 12204 4.629200 TCAAACACCTGTTGCATTTGAAAC 59.371 37.500 6.87 0.00 36.58 2.78
807 12205 4.629200 GTCAAACACCTGTTGCATTTGAAA 59.371 37.500 10.15 0.00 40.06 2.69
808 12206 4.081752 AGTCAAACACCTGTTGCATTTGAA 60.082 37.500 10.15 0.00 40.06 2.69
809 12207 3.446873 AGTCAAACACCTGTTGCATTTGA 59.553 39.130 5.50 5.50 38.44 2.69
810 12208 3.784338 AGTCAAACACCTGTTGCATTTG 58.216 40.909 0.00 0.00 38.44 2.32
820 12222 3.181476 GGTCAAATGCAAGTCAAACACCT 60.181 43.478 0.00 0.00 0.00 4.00
835 12237 1.375523 GCTGGTCGACCGGTCAAAT 60.376 57.895 37.28 0.00 44.34 2.32
878 12280 2.955751 ATCGCTTTACCTCGCCGAGC 62.956 60.000 9.01 0.00 0.00 5.03
985 12415 1.330655 ACCATCGGCGACCAGAGATT 61.331 55.000 13.76 0.00 0.00 2.40
986 12416 1.330655 AACCATCGGCGACCAGAGAT 61.331 55.000 13.76 0.00 0.00 2.75
1142 12593 4.835891 AGTAGGAGGTCGGCCCCG 62.836 72.222 0.08 0.00 41.35 5.73
1143 12594 2.838693 GAGTAGGAGGTCGGCCCC 60.839 72.222 0.08 3.43 34.57 5.80
1144 12595 2.838693 GGAGTAGGAGGTCGGCCC 60.839 72.222 0.08 0.00 34.57 5.80
1145 12596 2.043248 TGGAGTAGGAGGTCGGCC 60.043 66.667 0.00 0.00 0.00 6.13
1146 12597 2.424733 GGTGGAGTAGGAGGTCGGC 61.425 68.421 0.00 0.00 0.00 5.54
1218 12669 2.185608 GGGAGCGAGTCCTTGAGC 59.814 66.667 4.42 0.00 46.06 4.26
1653 13107 2.047179 GAGAGGCGGTTGTGGACC 60.047 66.667 0.00 0.00 45.55 4.46
1761 13215 2.361483 TCCCCGGATTCGTCGTCA 60.361 61.111 0.73 0.00 33.95 4.35
1815 13269 4.924187 CCCTCGATCCGCCTCCCT 62.924 72.222 0.00 0.00 0.00 4.20
2205 13659 3.047877 CGGAACTTGTCGCCCCAC 61.048 66.667 0.00 0.00 0.00 4.61
2224 13678 1.338136 ATGGAGATGTCGGTGGGGAC 61.338 60.000 0.00 0.00 37.45 4.46
2265 13719 3.449018 GGCAGTTAGGATCTGAGTTCTGA 59.551 47.826 0.00 0.00 35.20 3.27
2266 13720 3.736433 CGGCAGTTAGGATCTGAGTTCTG 60.736 52.174 0.00 0.00 35.20 3.02
2267 13721 2.428890 CGGCAGTTAGGATCTGAGTTCT 59.571 50.000 0.00 0.00 35.20 3.01
2268 13722 2.815478 CGGCAGTTAGGATCTGAGTTC 58.185 52.381 0.00 0.00 35.20 3.01
2269 13723 1.134670 GCGGCAGTTAGGATCTGAGTT 60.135 52.381 0.00 0.00 35.20 3.01
2270 13724 0.461961 GCGGCAGTTAGGATCTGAGT 59.538 55.000 0.00 0.00 35.20 3.41
2271 13725 0.249657 GGCGGCAGTTAGGATCTGAG 60.250 60.000 3.07 0.00 35.20 3.35
2298 13752 1.353103 CGAGCAATCAATCGGCCAC 59.647 57.895 2.24 0.00 35.33 5.01
2459 13923 1.063027 CACATGTCCACATTAGCAGCG 59.937 52.381 0.00 0.00 33.61 5.18
2460 13924 2.086869 ACACATGTCCACATTAGCAGC 58.913 47.619 0.00 0.00 33.61 5.25
2461 13925 4.252878 TGTACACATGTCCACATTAGCAG 58.747 43.478 0.00 0.00 33.61 4.24
2462 13926 4.020662 TCTGTACACATGTCCACATTAGCA 60.021 41.667 8.99 0.00 33.61 3.49
2560 14024 2.550830 AGCTGGGTCTGTGTAAACTG 57.449 50.000 0.00 0.00 0.00 3.16
2573 14037 2.189594 TCAGATGTCACAAAGCTGGG 57.810 50.000 6.01 0.00 0.00 4.45
2604 14112 3.866910 CACATGCTTTTGTCAACAAAGCT 59.133 39.130 18.33 6.07 45.34 3.74
2605 14113 3.864583 TCACATGCTTTTGTCAACAAAGC 59.135 39.130 13.01 13.01 45.34 3.51
2606 14114 5.005012 CACTCACATGCTTTTGTCAACAAAG 59.995 40.000 8.21 5.04 45.34 2.77
2612 14120 2.929641 TCCACTCACATGCTTTTGTCA 58.070 42.857 0.00 0.00 0.00 3.58
2647 14155 2.749621 GTTTCAGTGTGGATGGATGGAC 59.250 50.000 0.00 0.00 0.00 4.02
2648 14156 2.374839 TGTTTCAGTGTGGATGGATGGA 59.625 45.455 0.00 0.00 0.00 3.41
2650 14158 3.678289 TCTGTTTCAGTGTGGATGGATG 58.322 45.455 0.00 0.00 32.61 3.51
2651 14159 3.307975 CCTCTGTTTCAGTGTGGATGGAT 60.308 47.826 0.00 0.00 32.61 3.41
2652 14160 2.038952 CCTCTGTTTCAGTGTGGATGGA 59.961 50.000 0.00 0.00 32.61 3.41
2653 14161 2.038952 TCCTCTGTTTCAGTGTGGATGG 59.961 50.000 0.00 0.00 32.61 3.51
2654 14162 3.407424 TCCTCTGTTTCAGTGTGGATG 57.593 47.619 0.00 0.00 32.61 3.51
2655 14163 4.647564 AATCCTCTGTTTCAGTGTGGAT 57.352 40.909 11.96 11.96 38.04 3.41
2684 14225 2.710096 AATCGTGTGGGGATTACAGG 57.290 50.000 0.00 0.00 32.57 4.00
2691 14232 1.060729 TTCAGGAAATCGTGTGGGGA 58.939 50.000 3.35 0.00 33.80 4.81
2695 14236 7.485913 CCTATGAAATTTTCAGGAAATCGTGTG 59.514 37.037 16.34 0.00 43.98 3.82
2742 14283 0.028770 TTTTCCTGTGAAACGCAGCG 59.971 50.000 14.82 14.82 42.39 5.18
2744 14285 3.735746 GGAAATTTTCCTGTGAAACGCAG 59.264 43.478 19.01 5.48 46.57 5.18
2767 14308 0.879765 TTCGAGAGGTTGGAGTCGAC 59.120 55.000 7.70 7.70 40.94 4.20
2770 14311 3.580731 CTTTCTTCGAGAGGTTGGAGTC 58.419 50.000 0.00 0.00 0.00 3.36
2791 14332 4.359706 CAAGGACTAAAACTGTTTGCACC 58.640 43.478 6.53 8.37 0.00 5.01
2792 14333 3.796717 GCAAGGACTAAAACTGTTTGCAC 59.203 43.478 6.53 0.00 39.25 4.57
2797 14338 4.164843 TCCAGCAAGGACTAAAACTGTT 57.835 40.909 0.00 0.00 43.07 3.16
2811 14352 1.941209 GCGTCAACTCAGATCCAGCAA 60.941 52.381 0.00 0.00 0.00 3.91
2821 14362 3.446310 TCACAGTTTAGCGTCAACTCA 57.554 42.857 0.00 0.00 31.83 3.41
2836 14377 4.797275 GCAGAAATGGGGAAAACTTCACAG 60.797 45.833 0.00 0.00 33.74 3.66
2837 14378 3.069443 GCAGAAATGGGGAAAACTTCACA 59.931 43.478 0.00 0.00 33.74 3.58
2838 14379 3.653344 GCAGAAATGGGGAAAACTTCAC 58.347 45.455 0.00 0.00 0.00 3.18
2840 14381 2.296190 ACGCAGAAATGGGGAAAACTTC 59.704 45.455 0.00 0.00 0.00 3.01
2842 14383 1.995376 ACGCAGAAATGGGGAAAACT 58.005 45.000 0.00 0.00 0.00 2.66
2847 14388 1.268352 CGAAAAACGCAGAAATGGGGA 59.732 47.619 0.00 0.00 34.51 4.81
2848 14389 1.668628 CCGAAAAACGCAGAAATGGGG 60.669 52.381 0.00 0.00 41.07 4.96
2851 14392 4.089923 GGAATTCCGAAAAACGCAGAAATG 59.910 41.667 9.17 0.00 41.07 2.32
2857 14398 1.335506 GCAGGAATTCCGAAAAACGCA 60.336 47.619 18.82 0.00 42.08 5.24
2866 14407 3.717707 TCTTCGATTAGCAGGAATTCCG 58.282 45.455 18.82 14.28 42.08 4.30
2870 14411 4.321601 CGAGGATCTTCGATTAGCAGGAAT 60.322 45.833 21.56 0.00 43.03 3.01
2872 14413 2.554462 CGAGGATCTTCGATTAGCAGGA 59.446 50.000 21.56 0.00 43.03 3.86
2873 14414 2.554462 TCGAGGATCTTCGATTAGCAGG 59.446 50.000 24.23 0.00 44.00 4.85
2874 14415 3.906014 TCGAGGATCTTCGATTAGCAG 57.094 47.619 24.23 0.00 44.00 4.24
2881 14422 3.575630 CAAAGTTGTCGAGGATCTTCGA 58.424 45.455 24.23 24.23 46.41 3.71
2882 14423 2.092838 GCAAAGTTGTCGAGGATCTTCG 59.907 50.000 20.24 20.24 41.79 3.79
2883 14424 3.124297 CAGCAAAGTTGTCGAGGATCTTC 59.876 47.826 0.00 0.00 0.00 2.87
2886 14647 2.417719 ACAGCAAAGTTGTCGAGGATC 58.582 47.619 0.00 0.00 0.00 3.36
2903 14664 8.991243 ATCCAATATTTCATCAACACAAACAG 57.009 30.769 0.00 0.00 0.00 3.16
2912 14673 8.626526 CACATCACAGATCCAATATTTCATCAA 58.373 33.333 6.28 0.00 0.00 2.57
2922 14683 3.220110 GCATCCACATCACAGATCCAAT 58.780 45.455 0.00 0.00 0.00 3.16
2923 14684 2.646930 GCATCCACATCACAGATCCAA 58.353 47.619 0.00 0.00 0.00 3.53
2936 14736 0.257039 AATGGGACTGAGGCATCCAC 59.743 55.000 0.00 0.00 36.65 4.02
2944 14744 2.675889 GCAATTGCCAAATGGGACTGAG 60.676 50.000 20.06 0.00 40.01 3.35
2958 14759 4.261072 CCTCACTAGACATGATGCAATTGC 60.261 45.833 23.69 23.69 42.50 3.56
2983 14795 2.276058 GATTCGTCGTTGCGCTGC 60.276 61.111 9.73 0.00 0.00 5.25
2984 14796 1.057822 CTGATTCGTCGTTGCGCTG 59.942 57.895 9.73 0.00 0.00 5.18
2985 14797 2.094659 CCTGATTCGTCGTTGCGCT 61.095 57.895 9.73 0.00 0.00 5.92
2986 14798 1.897398 AACCTGATTCGTCGTTGCGC 61.897 55.000 0.00 0.00 0.00 6.09
2991 14803 4.243270 CCTAAAAGAACCTGATTCGTCGT 58.757 43.478 0.00 0.00 42.69 4.34
2994 14806 3.244770 TGGCCTAAAAGAACCTGATTCGT 60.245 43.478 3.32 0.00 42.69 3.85
2996 14808 4.079253 TGTGGCCTAAAAGAACCTGATTC 58.921 43.478 3.32 0.00 37.62 2.52
3003 14815 5.010617 TGGAGAAAATGTGGCCTAAAAGAAC 59.989 40.000 3.32 0.00 0.00 3.01
3006 14818 4.321974 GGTGGAGAAAATGTGGCCTAAAAG 60.322 45.833 3.32 0.00 0.00 2.27
3008 14820 3.161866 GGTGGAGAAAATGTGGCCTAAA 58.838 45.455 3.32 0.00 0.00 1.85
3011 14823 0.251787 GGGTGGAGAAAATGTGGCCT 60.252 55.000 3.32 0.00 0.00 5.19
3013 14825 0.603065 GTGGGTGGAGAAAATGTGGC 59.397 55.000 0.00 0.00 0.00 5.01
3014 14826 1.993956 TGTGGGTGGAGAAAATGTGG 58.006 50.000 0.00 0.00 0.00 4.17
3015 14827 5.920193 AATATGTGGGTGGAGAAAATGTG 57.080 39.130 0.00 0.00 0.00 3.21
3035 14848 9.097257 CTGAACCTTTTCACACACAAAATAAAT 57.903 29.630 0.00 0.00 36.79 1.40
3039 14852 4.869861 GCTGAACCTTTTCACACACAAAAT 59.130 37.500 0.00 0.00 36.79 1.82
3041 14854 3.509575 AGCTGAACCTTTTCACACACAAA 59.490 39.130 0.00 0.00 36.79 2.83
3042 14855 3.088532 AGCTGAACCTTTTCACACACAA 58.911 40.909 0.00 0.00 36.79 3.33
3043 14856 2.722094 AGCTGAACCTTTTCACACACA 58.278 42.857 0.00 0.00 36.79 3.72
3044 14857 3.782889 AAGCTGAACCTTTTCACACAC 57.217 42.857 0.00 0.00 36.79 3.82
3045 14858 3.509575 ACAAAGCTGAACCTTTTCACACA 59.490 39.130 0.00 0.00 36.79 3.72
3046 14859 4.110036 ACAAAGCTGAACCTTTTCACAC 57.890 40.909 0.00 0.00 36.79 3.82
3056 14869 6.713792 TGGTTTTTGTTAACAAAGCTGAAC 57.286 33.333 27.55 26.07 45.34 3.18
3059 14872 6.507771 CGACATGGTTTTTGTTAACAAAGCTG 60.508 38.462 27.55 22.22 45.34 4.24
3069 14882 0.391228 GGCCCGACATGGTTTTTGTT 59.609 50.000 0.00 0.00 35.15 2.83
3078 14891 1.656818 GGTGTTGATGGCCCGACATG 61.657 60.000 0.00 0.00 33.43 3.21
3079 14892 1.378514 GGTGTTGATGGCCCGACAT 60.379 57.895 0.00 0.00 33.43 3.06
3080 14893 2.033448 GGTGTTGATGGCCCGACA 59.967 61.111 0.00 0.00 0.00 4.35
3081 14894 1.175983 TTTGGTGTTGATGGCCCGAC 61.176 55.000 0.00 0.00 0.00 4.79
3082 14895 0.468214 TTTTGGTGTTGATGGCCCGA 60.468 50.000 0.00 0.00 0.00 5.14
3083 14896 0.319469 GTTTTGGTGTTGATGGCCCG 60.319 55.000 0.00 0.00 0.00 6.13
3085 14898 1.686052 TCTGTTTTGGTGTTGATGGCC 59.314 47.619 0.00 0.00 0.00 5.36
3092 14927 3.131046 CCTTCTTGCTCTGTTTTGGTGTT 59.869 43.478 0.00 0.00 0.00 3.32
3097 14932 1.000171 GCCCCTTCTTGCTCTGTTTTG 60.000 52.381 0.00 0.00 0.00 2.44
3098 14933 1.332195 GCCCCTTCTTGCTCTGTTTT 58.668 50.000 0.00 0.00 0.00 2.43
3102 14937 1.302832 AACGCCCCTTCTTGCTCTG 60.303 57.895 0.00 0.00 0.00 3.35
3110 14946 2.436824 GAGAGCCAACGCCCCTTC 60.437 66.667 0.00 0.00 34.57 3.46
3124 14960 4.151121 TCTGAACCAAATGGCAAATGAGA 58.849 39.130 0.00 0.00 39.32 3.27
3145 14981 7.659390 CAGGGATTACACTTATCAAAGATCCTC 59.341 40.741 0.00 0.00 34.78 3.71
3151 14987 6.150976 TGTTGCAGGGATTACACTTATCAAAG 59.849 38.462 0.00 0.00 38.77 2.77
3153 14989 5.414454 GTGTTGCAGGGATTACACTTATCAA 59.586 40.000 9.34 0.00 38.23 2.57
3157 14993 4.359434 TGTGTTGCAGGGATTACACTTA 57.641 40.909 15.88 0.00 41.03 2.24
3205 15041 2.109128 TCCTAGGAAACACCATGCCAAA 59.891 45.455 9.71 0.00 42.04 3.28
3207 15043 1.367346 TCCTAGGAAACACCATGCCA 58.633 50.000 9.71 0.00 42.04 4.92
3208 15044 2.507407 TTCCTAGGAAACACCATGCC 57.493 50.000 22.27 0.00 42.04 4.40
3209 15045 5.405935 AATTTTCCTAGGAAACACCATGC 57.594 39.130 32.21 0.00 42.88 4.06
3210 15046 7.441017 TGAAAATTTTCCTAGGAAACACCATG 58.559 34.615 32.21 0.00 42.88 3.66
3219 15055 9.581289 TCAACAAGTATGAAAATTTTCCTAGGA 57.419 29.630 24.51 7.62 36.36 2.94
3224 15060 8.764287 CACCTTCAACAAGTATGAAAATTTTCC 58.236 33.333 24.51 11.86 36.43 3.13
3225 15061 8.275632 GCACCTTCAACAAGTATGAAAATTTTC 58.724 33.333 21.60 21.60 36.43 2.29
3226 15062 7.768120 TGCACCTTCAACAAGTATGAAAATTTT 59.232 29.630 2.28 2.28 36.43 1.82
3227 15063 7.271511 TGCACCTTCAACAAGTATGAAAATTT 58.728 30.769 0.00 0.00 36.43 1.82
3228 15064 6.815089 TGCACCTTCAACAAGTATGAAAATT 58.185 32.000 0.00 0.00 36.43 1.82
3229 15065 6.403866 TGCACCTTCAACAAGTATGAAAAT 57.596 33.333 0.00 0.00 36.43 1.82
3230 15066 5.843673 TGCACCTTCAACAAGTATGAAAA 57.156 34.783 0.00 0.00 36.43 2.29
3232 15068 5.129634 TCTTGCACCTTCAACAAGTATGAA 58.870 37.500 0.00 0.00 41.22 2.57
3233 15069 4.713553 TCTTGCACCTTCAACAAGTATGA 58.286 39.130 0.00 0.00 41.22 2.15
3234 15070 5.437289 TTCTTGCACCTTCAACAAGTATG 57.563 39.130 0.00 0.00 41.22 2.39
3236 15072 4.887071 ACATTCTTGCACCTTCAACAAGTA 59.113 37.500 0.00 0.00 41.22 2.24
3237 15073 3.701040 ACATTCTTGCACCTTCAACAAGT 59.299 39.130 0.00 0.00 41.22 3.16
3238 15074 4.046462 CACATTCTTGCACCTTCAACAAG 58.954 43.478 0.00 0.00 41.70 3.16
3239 15075 3.446873 ACACATTCTTGCACCTTCAACAA 59.553 39.130 0.00 0.00 0.00 2.83
3240 15076 3.023119 ACACATTCTTGCACCTTCAACA 58.977 40.909 0.00 0.00 0.00 3.33
3241 15077 3.715628 ACACATTCTTGCACCTTCAAC 57.284 42.857 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.