Multiple sequence alignment - TraesCS6B01G435200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G435200 chr6B 100.000 4205 0 0 1 4205 703309099 703304895 0.000000e+00 7766.0
1 TraesCS6B01G435200 chr6B 90.076 2106 151 26 1125 3202 703349531 703347456 0.000000e+00 2678.0
2 TraesCS6B01G435200 chr6B 93.379 438 17 4 1 433 703350617 703350187 4.580000e-179 638.0
3 TraesCS6B01G435200 chr6B 90.993 433 19 5 428 852 703350158 703349738 2.190000e-157 566.0
4 TraesCS6B01G435200 chr6B 92.339 248 14 2 840 1082 703349778 703349531 8.650000e-92 348.0
5 TraesCS6B01G435200 chr6A 90.975 1806 107 23 1426 3202 608126625 608124847 0.000000e+00 2381.0
6 TraesCS6B01G435200 chr6A 93.681 728 42 4 3480 4205 593455010 593455735 0.000000e+00 1086.0
7 TraesCS6B01G435200 chr6A 90.136 588 40 9 838 1420 608128293 608127719 0.000000e+00 749.0
8 TraesCS6B01G435200 chr6A 87.578 322 16 7 532 850 608128555 608128255 6.690000e-93 351.0
9 TraesCS6B01G435200 chr6A 92.424 66 5 0 442 507 608134731 608134666 1.240000e-15 95.3
10 TraesCS6B01G435200 chr6D 86.716 1769 116 57 430 2140 461463201 461461494 0.000000e+00 1855.0
11 TraesCS6B01G435200 chr6D 92.405 1106 66 3 2152 3256 461461420 461460332 0.000000e+00 1561.0
12 TraesCS6B01G435200 chr6D 87.633 469 20 10 1 433 461463697 461463231 1.040000e-140 510.0
13 TraesCS6B01G435200 chr4D 94.215 726 39 3 3481 4205 502968940 502968217 0.000000e+00 1105.0
14 TraesCS6B01G435200 chr4D 93.673 727 43 3 3480 4205 5529307 5528583 0.000000e+00 1085.0
15 TraesCS6B01G435200 chr4D 89.167 120 13 0 3313 3432 93458784 93458903 2.620000e-32 150.0
16 TraesCS6B01G435200 chr4D 88.618 123 13 1 3313 3434 55352441 55352563 9.420000e-32 148.0
17 TraesCS6B01G435200 chr3D 93.673 727 43 3 3480 4205 511059763 511059039 0.000000e+00 1085.0
18 TraesCS6B01G435200 chr2D 93.673 727 43 3 3480 4205 5154045 5154769 0.000000e+00 1085.0
19 TraesCS6B01G435200 chr2D 93.434 731 44 4 3477 4205 165537712 165538440 0.000000e+00 1081.0
20 TraesCS6B01G435200 chr2D 83.333 90 10 4 1727 1811 89285881 89285792 1.250000e-10 78.7
21 TraesCS6B01G435200 chr1D 93.544 728 43 4 3480 4205 467661431 467660706 0.000000e+00 1081.0
22 TraesCS6B01G435200 chr1D 93.416 729 44 4 3478 4205 391096738 391097463 0.000000e+00 1077.0
23 TraesCS6B01G435200 chr5D 93.517 725 45 2 3481 4205 386744544 386745266 0.000000e+00 1077.0
24 TraesCS6B01G435200 chr5D 89.167 120 13 0 3313 3432 118840568 118840449 2.620000e-32 150.0
25 TraesCS6B01G435200 chr7D 84.896 384 45 10 1635 2012 37116213 37115837 3.970000e-100 375.0
26 TraesCS6B01G435200 chr7A 80.702 228 36 5 1787 2012 711899246 711899467 2.010000e-38 171.0
27 TraesCS6B01G435200 chr7A 86.765 136 16 2 3300 3434 250603345 250603479 2.620000e-32 150.0
28 TraesCS6B01G435200 chr7A 81.183 186 27 7 1810 1992 197169698 197169518 4.380000e-30 143.0
29 TraesCS6B01G435200 chr1A 88.976 127 12 1 3306 3430 500974868 500974742 5.630000e-34 156.0
30 TraesCS6B01G435200 chr3B 89.831 118 12 0 3313 3430 308386946 308386829 7.280000e-33 152.0
31 TraesCS6B01G435200 chr1B 89.256 121 13 0 3310 3430 653831845 653831725 7.280000e-33 152.0
32 TraesCS6B01G435200 chrUn 86.765 136 16 2 3300 3434 321243270 321243136 2.620000e-32 150.0
33 TraesCS6B01G435200 chrUn 86.765 136 16 2 3300 3434 322420718 322420852 2.620000e-32 150.0
34 TraesCS6B01G435200 chr2B 84.270 89 8 5 1727 1811 141875927 141875841 9.690000e-12 82.4
35 TraesCS6B01G435200 chr2B 84.270 89 8 5 1727 1811 141914489 141914403 9.690000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G435200 chr6B 703304895 703309099 4204 True 7766.000000 7766 100.00000 1 4205 1 chr6B.!!$R1 4204
1 TraesCS6B01G435200 chr6B 703347456 703350617 3161 True 1057.500000 2678 91.69675 1 3202 4 chr6B.!!$R2 3201
2 TraesCS6B01G435200 chr6A 608124847 608128555 3708 True 1160.333333 2381 89.56300 532 3202 3 chr6A.!!$R2 2670
3 TraesCS6B01G435200 chr6A 593455010 593455735 725 False 1086.000000 1086 93.68100 3480 4205 1 chr6A.!!$F1 725
4 TraesCS6B01G435200 chr6D 461460332 461463697 3365 True 1308.666667 1855 88.91800 1 3256 3 chr6D.!!$R1 3255
5 TraesCS6B01G435200 chr4D 502968217 502968940 723 True 1105.000000 1105 94.21500 3481 4205 1 chr4D.!!$R2 724
6 TraesCS6B01G435200 chr4D 5528583 5529307 724 True 1085.000000 1085 93.67300 3480 4205 1 chr4D.!!$R1 725
7 TraesCS6B01G435200 chr3D 511059039 511059763 724 True 1085.000000 1085 93.67300 3480 4205 1 chr3D.!!$R1 725
8 TraesCS6B01G435200 chr2D 5154045 5154769 724 False 1085.000000 1085 93.67300 3480 4205 1 chr2D.!!$F1 725
9 TraesCS6B01G435200 chr2D 165537712 165538440 728 False 1081.000000 1081 93.43400 3477 4205 1 chr2D.!!$F2 728
10 TraesCS6B01G435200 chr1D 467660706 467661431 725 True 1081.000000 1081 93.54400 3480 4205 1 chr1D.!!$R1 725
11 TraesCS6B01G435200 chr1D 391096738 391097463 725 False 1077.000000 1077 93.41600 3478 4205 1 chr1D.!!$F1 727
12 TraesCS6B01G435200 chr5D 386744544 386745266 722 False 1077.000000 1077 93.51700 3481 4205 1 chr5D.!!$F1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 305 0.386858 TCGTCGCAAACTCTCTTCCG 60.387 55.0 0.0 0.0 0.00 4.30 F
1218 1339 0.032952 TCAGAATACGCATACGGCCC 59.967 55.0 0.0 0.0 46.04 5.80 F
1493 2706 0.040157 TTGCAGAGAACATTGTGCGC 60.040 50.0 0.0 0.0 38.84 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1455 2667 0.036765 ACATGTGGGCGTCGTACAAT 60.037 50.0 0.00 0.0 0.00 2.71 R
2671 3983 0.173481 TCATCAGGGACGCGAAGAAG 59.827 55.0 15.93 0.0 0.00 2.85 R
3438 4754 0.102300 TAGACGCGCTATGCACACAT 59.898 50.0 5.73 0.0 46.97 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 2.777832 AGACAGCAGGTTTCATCCTC 57.222 50.000 0.00 0.00 35.37 3.71
277 290 1.400629 GCGCCCCTTAAAGTTTTCGTC 60.401 52.381 0.00 0.00 0.00 4.20
282 295 3.243134 CCCCTTAAAGTTTTCGTCGCAAA 60.243 43.478 0.00 0.00 0.00 3.68
292 305 0.386858 TCGTCGCAAACTCTCTTCCG 60.387 55.000 0.00 0.00 0.00 4.30
346 360 5.483685 TTACAAGTCACCAGCAGTAAGAT 57.516 39.130 0.00 0.00 0.00 2.40
410 451 4.091549 AGAAACGGGATCTAGTAACCACA 58.908 43.478 0.00 0.00 0.00 4.17
426 467 3.334691 ACCACAAGTATGGATTGACACG 58.665 45.455 0.00 0.00 43.02 4.49
449 524 6.017109 ACGTGTCTTGCATAGAGTTTTCAATT 60.017 34.615 0.00 0.00 32.23 2.32
523 599 3.489731 CATGCCGTCATGCGACTT 58.510 55.556 10.48 0.00 43.00 3.01
542 618 1.004918 GTTAGAGGCCACGCACACT 60.005 57.895 5.01 0.00 0.00 3.55
647 728 0.742505 CGTACGCTAATGGGTGGAGA 59.257 55.000 0.52 0.00 39.74 3.71
698 779 3.065371 CGTTCATTGCCTTCTACAATCCC 59.935 47.826 0.00 0.00 35.58 3.85
716 797 2.092646 TCCCACATGTATGGCACTAACC 60.093 50.000 0.00 0.00 38.55 2.85
717 798 2.297701 CCACATGTATGGCACTAACCC 58.702 52.381 0.00 0.00 31.52 4.11
718 799 2.356638 CCACATGTATGGCACTAACCCA 60.357 50.000 0.00 0.00 36.66 4.51
719 800 2.682856 CACATGTATGGCACTAACCCAC 59.317 50.000 0.00 0.00 34.68 4.61
737 818 0.907230 ACCCCTCTCCTGTTGAGCTC 60.907 60.000 6.82 6.82 41.18 4.09
760 841 2.680251 AGCTAGTTAGGTAGCCCCTTC 58.320 52.381 0.00 0.00 45.74 3.46
776 857 3.379372 CCCCTTCGAGTTACGTTCTCATA 59.621 47.826 16.61 5.35 43.13 2.15
852 958 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
853 959 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
854 960 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
855 961 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
856 962 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
857 963 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
858 964 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
859 965 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
860 966 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
861 967 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
862 968 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
863 969 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
864 970 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
865 971 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
866 972 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
867 973 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
868 974 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
869 975 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
870 976 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
871 977 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
872 978 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
873 979 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
874 980 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
875 981 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
876 982 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
877 983 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
878 984 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
879 985 6.857848 TCTCTCTCTCTCTCTCTCTCTCTAT 58.142 44.000 0.00 0.00 0.00 1.98
884 990 8.956446 TCTCTCTCTCTCTCTCTCTATGATTA 57.044 38.462 0.00 0.00 0.00 1.75
1023 1131 1.271840 ACTCCATAGAAGCCGGCCAA 61.272 55.000 26.15 6.43 0.00 4.52
1032 1144 2.788191 AAGCCGGCCAAGTTCTCTCG 62.788 60.000 26.15 0.00 0.00 4.04
1048 1160 1.756375 CTCGCAGGCTTCGAATTCCG 61.756 60.000 10.95 0.00 35.38 4.30
1100 1221 1.680207 GTACGAGTAAGGATTCGGCCT 59.320 52.381 0.00 0.00 39.00 5.19
1218 1339 0.032952 TCAGAATACGCATACGGCCC 59.967 55.000 0.00 0.00 46.04 5.80
1219 1340 0.949105 CAGAATACGCATACGGCCCC 60.949 60.000 0.00 0.00 46.04 5.80
1220 1341 2.025418 GAATACGCATACGGCCCCG 61.025 63.158 4.96 4.96 46.04 5.73
1221 1342 3.524648 AATACGCATACGGCCCCGG 62.525 63.158 11.83 0.00 46.04 5.73
1362 1486 8.621532 TGTGCTTGTTAGAATTTTATGAGAGT 57.378 30.769 0.00 0.00 0.00 3.24
1365 1489 9.719355 TGCTTGTTAGAATTTTATGAGAGTGTA 57.281 29.630 0.00 0.00 0.00 2.90
1379 1503 6.867519 TGAGAGTGTATGTTTATTCCTGGA 57.132 37.500 0.00 0.00 0.00 3.86
1398 1522 8.335532 TCCTGGACTACATAAAAAGACAAATG 57.664 34.615 0.00 0.00 0.00 2.32
1488 2701 3.571571 CCACATGTTGCAGAGAACATTG 58.428 45.455 0.00 2.88 42.69 2.82
1492 2705 1.002576 TGTTGCAGAGAACATTGTGCG 60.003 47.619 0.00 0.00 38.84 5.34
1493 2706 0.040157 TTGCAGAGAACATTGTGCGC 60.040 50.000 0.00 0.00 38.84 6.09
1587 2800 2.158667 GGGAGTCAAAAGACCCAACTCA 60.159 50.000 0.00 0.00 41.72 3.41
1642 2855 7.168219 TGGCATAGTGATATAATGGAAAGGTC 58.832 38.462 0.00 0.00 0.00 3.85
1654 2867 1.623811 GGAAAGGTCTGGCTACACTCA 59.376 52.381 0.00 0.00 0.00 3.41
1659 2872 1.137872 GGTCTGGCTACACTCAGATGG 59.862 57.143 0.00 0.00 41.36 3.51
1725 2938 7.156673 ACCAAACATGATCCAAAAATTCTGAG 58.843 34.615 0.00 0.00 0.00 3.35
1735 2948 7.826260 TCCAAAAATTCTGAGTTTTTGTGAC 57.174 32.000 31.37 0.00 46.97 3.67
1754 2969 5.804473 TGTGACACAACATGAACAAATGTTC 59.196 36.000 17.28 17.28 45.47 3.18
1777 2994 7.649533 TCTAGACATGCAAAATTTCATCCAT 57.350 32.000 0.00 0.00 0.00 3.41
1918 3138 5.295540 TGAAATTTTGCAGCAACCTAAAACC 59.704 36.000 7.54 0.00 0.00 3.27
1949 3169 6.645827 TCATGTTTCATGTCGCAAAATTTCAT 59.354 30.769 9.13 0.00 0.00 2.57
1950 3170 7.811713 TCATGTTTCATGTCGCAAAATTTCATA 59.188 29.630 9.13 0.00 0.00 2.15
2157 3469 8.157476 GCTCTAATGGATAAATTAGGACCTTGA 58.843 37.037 0.00 0.00 39.57 3.02
2196 3508 6.073314 ACCTAATTGCAATATGATGGAGCTT 58.927 36.000 13.39 0.00 0.00 3.74
2210 3522 7.936496 TGATGGAGCTTATTGATGTTTGTTA 57.064 32.000 0.00 0.00 0.00 2.41
2236 3548 5.114780 GCAGAGAATATGTCTGAAGCAGAA 58.885 41.667 16.22 0.00 43.65 3.02
2447 3759 1.487976 GCCTCCATCAGAATCTGGTGA 59.512 52.381 23.93 9.74 44.59 4.02
2500 3812 2.752807 GGATTTCCGGGCCTGGCTA 61.753 63.158 27.42 16.23 0.00 3.93
2671 3983 2.281208 TACAGCAACACCACCGCC 60.281 61.111 0.00 0.00 0.00 6.13
2678 3990 1.597027 AACACCACCGCCTTCTTCG 60.597 57.895 0.00 0.00 0.00 3.79
2695 4007 0.752658 TCGCGTCCCTGATGATCATT 59.247 50.000 10.14 0.00 0.00 2.57
2734 4046 2.132762 GTGTACAACAAGGAGACCGTG 58.867 52.381 0.00 0.00 38.88 4.94
2806 4118 2.848678 TGGGGACTAGCTACATCACT 57.151 50.000 0.00 0.00 0.00 3.41
2917 4229 2.754648 CATCGTCTGGATGCAACGT 58.245 52.632 16.68 0.00 45.57 3.99
2980 4292 4.093556 GGTTTGTTGCTATGAGTGAGCTAC 59.906 45.833 0.00 2.85 43.29 3.58
2993 4305 6.701340 TGAGTGAGCTACATGTAAGAACAAT 58.299 36.000 7.06 4.65 39.58 2.71
2994 4306 7.161404 TGAGTGAGCTACATGTAAGAACAATT 58.839 34.615 7.06 0.00 39.58 2.32
3042 4357 1.668826 TCTGTAAATCCCTGCCCTGT 58.331 50.000 0.00 0.00 0.00 4.00
3059 4374 2.288334 CCTGTTTTTGCTGCACATGCTA 60.288 45.455 0.00 0.00 42.66 3.49
3085 4401 5.703978 TTTGACACCATGGAGTTGTAATG 57.296 39.130 21.47 5.91 0.00 1.90
3086 4402 3.684908 TGACACCATGGAGTTGTAATGG 58.315 45.455 21.47 0.00 45.34 3.16
3091 4407 3.202906 CCATGGAGTTGTAATGGTACGG 58.797 50.000 5.56 0.00 36.82 4.02
3092 4408 3.370103 CCATGGAGTTGTAATGGTACGGT 60.370 47.826 5.56 0.00 36.82 4.83
3093 4409 3.598019 TGGAGTTGTAATGGTACGGTC 57.402 47.619 0.00 0.00 32.40 4.79
3094 4410 3.167485 TGGAGTTGTAATGGTACGGTCT 58.833 45.455 0.00 0.00 32.40 3.85
3095 4411 3.579586 TGGAGTTGTAATGGTACGGTCTT 59.420 43.478 0.00 0.00 32.40 3.01
3096 4412 3.930848 GGAGTTGTAATGGTACGGTCTTG 59.069 47.826 0.00 0.00 32.40 3.02
3097 4413 4.562143 GGAGTTGTAATGGTACGGTCTTGT 60.562 45.833 0.00 0.00 32.40 3.16
3098 4414 5.336690 GGAGTTGTAATGGTACGGTCTTGTA 60.337 44.000 0.00 0.00 32.40 2.41
3099 4415 6.100404 AGTTGTAATGGTACGGTCTTGTAA 57.900 37.500 0.00 0.00 32.40 2.41
3100 4416 6.704310 AGTTGTAATGGTACGGTCTTGTAAT 58.296 36.000 0.00 0.00 32.40 1.89
3135 4451 1.527034 CTTCAGCCAGCAAAGCACTA 58.473 50.000 0.00 0.00 0.00 2.74
3138 4454 0.239347 CAGCCAGCAAAGCACTACAC 59.761 55.000 0.00 0.00 0.00 2.90
3164 4480 2.099263 GGCGTATACTCAGCAGTCTTGA 59.901 50.000 0.56 0.00 33.62 3.02
3170 4486 1.342819 ACTCAGCAGTCTTGACTCACC 59.657 52.381 0.00 0.00 0.00 4.02
3199 4515 5.122396 AGACATCCGCAACAAGAGTTAATTC 59.878 40.000 0.00 0.00 35.85 2.17
3204 4520 4.788100 CCGCAACAAGAGTTAATTCAATCG 59.212 41.667 0.44 0.00 35.85 3.34
3212 4528 4.274459 AGAGTTAATTCAATCGAGGCATGC 59.726 41.667 9.90 9.90 0.00 4.06
3238 4554 9.570488 CGTAGCTTCTTGTTTTATTACTAGTCT 57.430 33.333 0.00 0.00 0.00 3.24
3260 4576 9.429359 AGTCTATTTGTTTGTAGATCTCACAAG 57.571 33.333 0.00 0.00 37.22 3.16
3261 4577 9.209175 GTCTATTTGTTTGTAGATCTCACAAGT 57.791 33.333 0.00 4.62 37.22 3.16
3262 4578 9.778741 TCTATTTGTTTGTAGATCTCACAAGTT 57.221 29.630 0.00 0.39 37.22 2.66
3303 4619 6.890558 TGTTTGTAGATTAAACAAGGTACGC 58.109 36.000 0.00 0.00 42.97 4.42
3304 4620 6.707161 TGTTTGTAGATTAAACAAGGTACGCT 59.293 34.615 0.00 0.00 42.97 5.07
3305 4621 7.871973 TGTTTGTAGATTAAACAAGGTACGCTA 59.128 33.333 0.00 0.00 42.97 4.26
3306 4622 8.711457 GTTTGTAGATTAAACAAGGTACGCTAA 58.289 33.333 0.00 0.00 38.05 3.09
3307 4623 8.830201 TTGTAGATTAAACAAGGTACGCTAAA 57.170 30.769 0.00 0.00 33.13 1.85
3308 4624 8.243289 TGTAGATTAAACAAGGTACGCTAAAC 57.757 34.615 0.00 0.00 0.00 2.01
3309 4625 7.871973 TGTAGATTAAACAAGGTACGCTAAACA 59.128 33.333 0.00 0.00 0.00 2.83
3310 4626 7.916914 AGATTAAACAAGGTACGCTAAACAT 57.083 32.000 0.00 0.00 0.00 2.71
3312 4628 9.609346 AGATTAAACAAGGTACGCTAAACATAT 57.391 29.630 0.00 0.00 0.00 1.78
3315 4631 9.874205 TTAAACAAGGTACGCTAAACATATACT 57.126 29.630 0.00 0.00 0.00 2.12
3316 4632 7.998753 AACAAGGTACGCTAAACATATACTC 57.001 36.000 0.00 0.00 0.00 2.59
3317 4633 7.344095 ACAAGGTACGCTAAACATATACTCT 57.656 36.000 0.00 0.00 0.00 3.24
3318 4634 7.424001 ACAAGGTACGCTAAACATATACTCTC 58.576 38.462 0.00 0.00 0.00 3.20
3319 4635 7.284944 ACAAGGTACGCTAAACATATACTCTCT 59.715 37.037 0.00 0.00 0.00 3.10
3320 4636 7.820578 AGGTACGCTAAACATATACTCTCTT 57.179 36.000 0.00 0.00 0.00 2.85
3321 4637 8.235359 AGGTACGCTAAACATATACTCTCTTT 57.765 34.615 0.00 0.00 0.00 2.52
3322 4638 8.136165 AGGTACGCTAAACATATACTCTCTTTG 58.864 37.037 0.00 0.00 0.00 2.77
3323 4639 7.919621 GGTACGCTAAACATATACTCTCTTTGT 59.080 37.037 0.00 0.00 0.00 2.83
3324 4640 7.988904 ACGCTAAACATATACTCTCTTTGTC 57.011 36.000 0.00 0.00 0.00 3.18
3325 4641 6.979238 ACGCTAAACATATACTCTCTTTGTCC 59.021 38.462 0.00 0.00 0.00 4.02
3326 4642 6.142480 CGCTAAACATATACTCTCTTTGTCCG 59.858 42.308 0.00 0.00 0.00 4.79
3327 4643 7.201145 GCTAAACATATACTCTCTTTGTCCGA 58.799 38.462 0.00 0.00 0.00 4.55
3328 4644 7.705325 GCTAAACATATACTCTCTTTGTCCGAA 59.295 37.037 0.00 0.00 0.00 4.30
3329 4645 9.582431 CTAAACATATACTCTCTTTGTCCGAAA 57.418 33.333 0.00 0.00 0.00 3.46
3333 4649 9.530633 ACATATACTCTCTTTGTCCGAAATAAC 57.469 33.333 0.00 0.00 0.00 1.89
3334 4650 9.751542 CATATACTCTCTTTGTCCGAAATAACT 57.248 33.333 0.00 0.00 0.00 2.24
3336 4652 6.787085 ACTCTCTTTGTCCGAAATAACTTG 57.213 37.500 0.00 0.00 0.00 3.16
3337 4653 6.289064 ACTCTCTTTGTCCGAAATAACTTGT 58.711 36.000 0.00 0.00 0.00 3.16
3338 4654 6.424207 ACTCTCTTTGTCCGAAATAACTTGTC 59.576 38.462 0.00 0.00 0.00 3.18
3339 4655 6.522054 TCTCTTTGTCCGAAATAACTTGTCT 58.478 36.000 0.00 0.00 0.00 3.41
3340 4656 6.645415 TCTCTTTGTCCGAAATAACTTGTCTC 59.355 38.462 0.00 0.00 0.00 3.36
3341 4657 6.285224 TCTTTGTCCGAAATAACTTGTCTCA 58.715 36.000 0.00 0.00 0.00 3.27
3342 4658 6.764085 TCTTTGTCCGAAATAACTTGTCTCAA 59.236 34.615 0.00 0.00 0.00 3.02
3343 4659 6.928979 TTGTCCGAAATAACTTGTCTCAAA 57.071 33.333 0.00 0.00 0.00 2.69
3344 4660 6.295039 TGTCCGAAATAACTTGTCTCAAAC 57.705 37.500 0.00 0.00 0.00 2.93
3345 4661 6.053005 TGTCCGAAATAACTTGTCTCAAACT 58.947 36.000 0.00 0.00 0.00 2.66
3346 4662 6.540914 TGTCCGAAATAACTTGTCTCAAACTT 59.459 34.615 0.00 0.00 0.00 2.66
3347 4663 6.851330 GTCCGAAATAACTTGTCTCAAACTTG 59.149 38.462 0.00 0.00 0.00 3.16
3348 4664 6.540914 TCCGAAATAACTTGTCTCAAACTTGT 59.459 34.615 0.00 0.00 0.00 3.16
3349 4665 7.066525 TCCGAAATAACTTGTCTCAAACTTGTT 59.933 33.333 0.00 0.00 0.00 2.83
3350 4666 7.700656 CCGAAATAACTTGTCTCAAACTTGTTT 59.299 33.333 0.00 0.00 0.00 2.83
3351 4667 8.734030 CGAAATAACTTGTCTCAAACTTGTTTC 58.266 33.333 0.00 0.00 0.00 2.78
3352 4668 9.788960 GAAATAACTTGTCTCAAACTTGTTTCT 57.211 29.630 0.00 0.00 0.00 2.52
3353 4669 9.788960 AAATAACTTGTCTCAAACTTGTTTCTC 57.211 29.630 0.00 0.00 0.00 2.87
3354 4670 6.817765 AACTTGTCTCAAACTTGTTTCTCA 57.182 33.333 0.00 0.00 0.00 3.27
3355 4671 6.817765 ACTTGTCTCAAACTTGTTTCTCAA 57.182 33.333 0.00 0.66 34.61 3.02
3356 4672 7.214467 ACTTGTCTCAAACTTGTTTCTCAAA 57.786 32.000 0.00 0.00 35.48 2.69
3357 4673 7.084486 ACTTGTCTCAAACTTGTTTCTCAAAC 58.916 34.615 0.00 0.00 41.73 2.93
3358 4674 5.627172 TGTCTCAAACTTGTTTCTCAAACG 58.373 37.500 0.00 0.00 44.28 3.60
3359 4675 5.028375 GTCTCAAACTTGTTTCTCAAACGG 58.972 41.667 0.00 0.00 44.28 4.44
3360 4676 4.938832 TCTCAAACTTGTTTCTCAAACGGA 59.061 37.500 0.00 0.00 44.28 4.69
3361 4677 5.588648 TCTCAAACTTGTTTCTCAAACGGAT 59.411 36.000 0.00 0.00 44.28 4.18
3362 4678 5.577835 TCAAACTTGTTTCTCAAACGGATG 58.422 37.500 0.00 0.00 44.28 3.51
3363 4679 5.124776 TCAAACTTGTTTCTCAAACGGATGT 59.875 36.000 0.00 0.00 44.28 3.06
3364 4680 6.316640 TCAAACTTGTTTCTCAAACGGATGTA 59.683 34.615 0.00 0.00 44.28 2.29
3365 4681 6.877611 AACTTGTTTCTCAAACGGATGTAT 57.122 33.333 0.00 0.00 44.28 2.29
3366 4682 6.481954 ACTTGTTTCTCAAACGGATGTATC 57.518 37.500 0.00 0.00 44.28 2.24
3367 4683 6.231211 ACTTGTTTCTCAAACGGATGTATCT 58.769 36.000 0.00 0.00 44.28 1.98
3368 4684 7.383687 ACTTGTTTCTCAAACGGATGTATCTA 58.616 34.615 0.00 0.00 44.28 1.98
3369 4685 7.545965 ACTTGTTTCTCAAACGGATGTATCTAG 59.454 37.037 0.00 0.00 44.28 2.43
3370 4686 5.810587 TGTTTCTCAAACGGATGTATCTAGC 59.189 40.000 0.00 0.00 44.28 3.42
3371 4687 5.592104 TTCTCAAACGGATGTATCTAGCA 57.408 39.130 0.00 0.00 0.00 3.49
3372 4688 4.933330 TCTCAAACGGATGTATCTAGCAC 58.067 43.478 0.00 0.00 0.00 4.40
3373 4689 4.645136 TCTCAAACGGATGTATCTAGCACT 59.355 41.667 0.00 0.00 0.00 4.40
3374 4690 5.826208 TCTCAAACGGATGTATCTAGCACTA 59.174 40.000 0.00 0.00 0.00 2.74
3375 4691 6.320418 TCTCAAACGGATGTATCTAGCACTAA 59.680 38.462 0.00 0.00 0.00 2.24
3376 4692 6.270815 TCAAACGGATGTATCTAGCACTAAC 58.729 40.000 0.00 0.00 0.00 2.34
3377 4693 6.096423 TCAAACGGATGTATCTAGCACTAACT 59.904 38.462 0.00 0.00 0.00 2.24
3378 4694 6.466885 AACGGATGTATCTAGCACTAACTT 57.533 37.500 0.00 0.00 0.00 2.66
3379 4695 5.833082 ACGGATGTATCTAGCACTAACTTG 58.167 41.667 0.00 0.00 0.00 3.16
3380 4696 5.221263 ACGGATGTATCTAGCACTAACTTGG 60.221 44.000 0.00 0.00 0.00 3.61
3381 4697 5.221263 CGGATGTATCTAGCACTAACTTGGT 60.221 44.000 0.00 0.00 0.00 3.67
3382 4698 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
3394 4710 7.849804 CACTAACTTGGTGCTAGATACATTT 57.150 36.000 0.00 0.00 0.00 2.32
3395 4711 8.942338 CACTAACTTGGTGCTAGATACATTTA 57.058 34.615 0.00 0.00 0.00 1.40
3396 4712 9.547753 CACTAACTTGGTGCTAGATACATTTAT 57.452 33.333 0.00 0.00 0.00 1.40
3400 4716 9.461312 AACTTGGTGCTAGATACATTTATTTGA 57.539 29.630 0.00 0.00 0.00 2.69
3401 4717 9.113838 ACTTGGTGCTAGATACATTTATTTGAG 57.886 33.333 0.00 0.00 0.00 3.02
3402 4718 8.450578 TTGGTGCTAGATACATTTATTTGAGG 57.549 34.615 0.00 0.00 0.00 3.86
3403 4719 6.998074 TGGTGCTAGATACATTTATTTGAGGG 59.002 38.462 0.00 0.00 0.00 4.30
3404 4720 7.147391 TGGTGCTAGATACATTTATTTGAGGGA 60.147 37.037 0.00 0.00 0.00 4.20
3405 4721 7.173390 GGTGCTAGATACATTTATTTGAGGGAC 59.827 40.741 0.00 0.00 0.00 4.46
3406 4722 7.715249 GTGCTAGATACATTTATTTGAGGGACA 59.285 37.037 0.00 0.00 0.00 4.02
3407 4723 8.271458 TGCTAGATACATTTATTTGAGGGACAA 58.729 33.333 0.00 0.00 36.65 3.18
3408 4724 8.778358 GCTAGATACATTTATTTGAGGGACAAG 58.222 37.037 0.00 0.00 39.77 3.16
3409 4725 7.573968 AGATACATTTATTTGAGGGACAAGC 57.426 36.000 0.00 0.00 39.77 4.01
3410 4726 7.349598 AGATACATTTATTTGAGGGACAAGCT 58.650 34.615 0.00 0.00 39.77 3.74
3411 4727 7.836183 AGATACATTTATTTGAGGGACAAGCTT 59.164 33.333 0.00 0.00 39.77 3.74
3412 4728 6.670695 ACATTTATTTGAGGGACAAGCTTT 57.329 33.333 0.00 0.00 39.77 3.51
3413 4729 7.066307 ACATTTATTTGAGGGACAAGCTTTT 57.934 32.000 0.00 0.00 39.77 2.27
3414 4730 7.508687 ACATTTATTTGAGGGACAAGCTTTTT 58.491 30.769 0.00 0.00 39.77 1.94
3415 4731 7.657354 ACATTTATTTGAGGGACAAGCTTTTTC 59.343 33.333 0.00 0.00 39.77 2.29
3416 4732 3.708563 TTTGAGGGACAAGCTTTTTCG 57.291 42.857 0.00 0.00 39.77 3.46
3417 4733 2.631160 TGAGGGACAAGCTTTTTCGA 57.369 45.000 0.00 0.00 0.00 3.71
3418 4734 2.925724 TGAGGGACAAGCTTTTTCGAA 58.074 42.857 0.00 0.00 0.00 3.71
3419 4735 3.486383 TGAGGGACAAGCTTTTTCGAAT 58.514 40.909 0.00 0.00 0.00 3.34
3420 4736 3.253188 TGAGGGACAAGCTTTTTCGAATG 59.747 43.478 0.00 0.00 0.00 2.67
3421 4737 2.558359 AGGGACAAGCTTTTTCGAATGG 59.442 45.455 0.00 0.00 0.00 3.16
3422 4738 2.556622 GGGACAAGCTTTTTCGAATGGA 59.443 45.455 0.00 0.00 0.00 3.41
3423 4739 3.366374 GGGACAAGCTTTTTCGAATGGAG 60.366 47.826 0.00 0.00 0.00 3.86
3424 4740 3.502211 GGACAAGCTTTTTCGAATGGAGA 59.498 43.478 0.00 0.00 0.00 3.71
3425 4741 4.378874 GGACAAGCTTTTTCGAATGGAGAG 60.379 45.833 0.00 0.00 0.00 3.20
3426 4742 4.389374 ACAAGCTTTTTCGAATGGAGAGA 58.611 39.130 0.00 0.00 0.00 3.10
3427 4743 4.453819 ACAAGCTTTTTCGAATGGAGAGAG 59.546 41.667 0.00 0.00 0.00 3.20
3428 4744 4.278975 AGCTTTTTCGAATGGAGAGAGT 57.721 40.909 0.00 0.00 0.00 3.24
3429 4745 5.407407 AGCTTTTTCGAATGGAGAGAGTA 57.593 39.130 0.00 0.00 0.00 2.59
3430 4746 5.983540 AGCTTTTTCGAATGGAGAGAGTAT 58.016 37.500 0.00 0.00 0.00 2.12
3431 4747 6.410540 AGCTTTTTCGAATGGAGAGAGTATT 58.589 36.000 0.00 0.00 0.00 1.89
3432 4748 7.556844 AGCTTTTTCGAATGGAGAGAGTATTA 58.443 34.615 0.00 0.00 0.00 0.98
3433 4749 8.207545 AGCTTTTTCGAATGGAGAGAGTATTAT 58.792 33.333 0.00 0.00 0.00 1.28
3434 4750 8.491950 GCTTTTTCGAATGGAGAGAGTATTATC 58.508 37.037 0.00 0.00 0.00 1.75
3435 4751 9.757227 CTTTTTCGAATGGAGAGAGTATTATCT 57.243 33.333 0.00 0.00 0.00 1.98
3436 4752 9.534565 TTTTTCGAATGGAGAGAGTATTATCTG 57.465 33.333 0.00 0.00 0.00 2.90
3437 4753 6.260870 TCGAATGGAGAGAGTATTATCTGC 57.739 41.667 0.00 0.00 34.74 4.26
3438 4754 5.770162 TCGAATGGAGAGAGTATTATCTGCA 59.230 40.000 6.54 6.54 46.07 4.41
3442 4758 6.094193 TGGAGAGAGTATTATCTGCATGTG 57.906 41.667 0.00 0.00 38.74 3.21
3443 4759 5.600069 TGGAGAGAGTATTATCTGCATGTGT 59.400 40.000 0.00 0.00 38.74 3.72
3444 4760 5.925397 GGAGAGAGTATTATCTGCATGTGTG 59.075 44.000 0.00 0.00 34.36 3.82
3454 4770 3.092403 CATGTGTGCATAGCGCGT 58.908 55.556 8.43 0.00 46.97 6.01
3455 4771 1.011904 CATGTGTGCATAGCGCGTC 60.012 57.895 8.43 0.00 46.97 5.19
3456 4772 1.153568 ATGTGTGCATAGCGCGTCT 60.154 52.632 8.43 8.22 46.97 4.18
3457 4773 0.102300 ATGTGTGCATAGCGCGTCTA 59.898 50.000 8.43 10.41 46.97 2.59
3458 4774 0.525455 TGTGTGCATAGCGCGTCTAG 60.525 55.000 8.43 5.52 46.97 2.43
3459 4775 0.525668 GTGTGCATAGCGCGTCTAGT 60.526 55.000 8.43 0.00 46.97 2.57
3460 4776 0.248498 TGTGCATAGCGCGTCTAGTC 60.248 55.000 8.43 6.46 46.97 2.59
3461 4777 0.248498 GTGCATAGCGCGTCTAGTCA 60.248 55.000 8.43 8.80 46.97 3.41
3462 4778 0.248498 TGCATAGCGCGTCTAGTCAC 60.248 55.000 8.43 2.20 46.97 3.67
3463 4779 0.248498 GCATAGCGCGTCTAGTCACA 60.248 55.000 8.43 0.00 0.00 3.58
3464 4780 1.600663 GCATAGCGCGTCTAGTCACAT 60.601 52.381 8.43 0.00 0.00 3.21
3465 4781 2.350484 GCATAGCGCGTCTAGTCACATA 60.350 50.000 8.43 0.00 0.00 2.29
3466 4782 3.670895 GCATAGCGCGTCTAGTCACATAT 60.671 47.826 8.43 0.00 0.00 1.78
3467 4783 2.690173 AGCGCGTCTAGTCACATATC 57.310 50.000 8.43 0.00 0.00 1.63
3468 4784 1.947456 AGCGCGTCTAGTCACATATCA 59.053 47.619 8.43 0.00 0.00 2.15
3469 4785 2.031595 AGCGCGTCTAGTCACATATCAG 60.032 50.000 8.43 0.00 0.00 2.90
3470 4786 2.031944 GCGCGTCTAGTCACATATCAGA 60.032 50.000 8.43 0.00 0.00 3.27
3471 4787 3.546617 CGCGTCTAGTCACATATCAGAC 58.453 50.000 0.00 0.00 33.78 3.51
3472 4788 3.607310 CGCGTCTAGTCACATATCAGACC 60.607 52.174 0.00 0.00 35.38 3.85
3473 4789 3.607310 GCGTCTAGTCACATATCAGACCG 60.607 52.174 0.00 0.00 35.38 4.79
3474 4790 3.607310 CGTCTAGTCACATATCAGACCGC 60.607 52.174 0.00 0.00 35.38 5.68
3475 4791 3.566322 GTCTAGTCACATATCAGACCGCT 59.434 47.826 0.00 0.00 35.38 5.52
3476 4792 4.755629 GTCTAGTCACATATCAGACCGCTA 59.244 45.833 0.00 0.00 35.38 4.26
3477 4793 5.238868 GTCTAGTCACATATCAGACCGCTAA 59.761 44.000 0.00 0.00 35.38 3.09
3478 4794 4.308899 AGTCACATATCAGACCGCTAAC 57.691 45.455 0.00 0.00 35.38 2.34
3593 4911 5.048713 GCCATACAACAACAAGACTAAAGCT 60.049 40.000 0.00 0.00 0.00 3.74
3597 4915 5.433526 ACAACAACAAGACTAAAGCTACCA 58.566 37.500 0.00 0.00 0.00 3.25
3654 4972 1.329256 GAAGGGGCGCAGATAGTCTA 58.671 55.000 10.83 0.00 0.00 2.59
3681 4999 3.610040 ATACCAAACAGACATCGCAGA 57.390 42.857 0.00 0.00 45.75 4.26
3785 5103 1.684734 AGGACGTCTGCCGGGTATT 60.685 57.895 16.46 0.00 42.24 1.89
3832 5150 4.568359 CCAATCCATCTTCAGAGTTGTACG 59.432 45.833 0.00 0.00 0.00 3.67
3864 5182 0.037790 GTGTCAGGTCTCTCTGCCAC 60.038 60.000 0.00 0.00 36.66 5.01
3931 5249 2.583441 CCTCCCACAGCGAACTCCA 61.583 63.158 0.00 0.00 0.00 3.86
3935 5253 1.202879 TCCCACAGCGAACTCCAAATT 60.203 47.619 0.00 0.00 0.00 1.82
4011 5330 2.783135 GCTCCACCAAAGAATCTGTCA 58.217 47.619 0.00 0.00 0.00 3.58
4022 5341 3.458831 AGAATCTGTCATCTGGTCCCTT 58.541 45.455 0.00 0.00 0.00 3.95
4026 5345 3.184628 TCTGTCATCTGGTCCCTTGATT 58.815 45.455 0.00 0.00 0.00 2.57
4028 5347 4.782691 TCTGTCATCTGGTCCCTTGATTAA 59.217 41.667 0.00 0.00 0.00 1.40
4099 5418 1.367471 GCCGTCATCCGATCATCCA 59.633 57.895 0.00 0.00 39.56 3.41
4145 5464 2.149578 CAGAGAGTGGCCTTGAACTTG 58.850 52.381 3.32 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.135279 AGGAGTTGGAGGAGATAGGAGA 58.865 50.000 0.00 0.00 0.00 3.71
16 17 3.117322 TGAGGAGTTGGAGGAGATAGGAG 60.117 52.174 0.00 0.00 0.00 3.69
89 90 0.796312 ATTTTGGCACGTGTAGCGAG 59.204 50.000 18.38 0.00 44.77 5.03
121 122 1.682684 ACCCTGACCCTGCTCTACG 60.683 63.158 0.00 0.00 0.00 3.51
277 290 3.865745 ACATATTCGGAAGAGAGTTTGCG 59.134 43.478 0.00 0.00 43.69 4.85
282 295 5.942961 TCTAGGACATATTCGGAAGAGAGT 58.057 41.667 0.00 0.00 43.69 3.24
346 360 6.732896 TGGGTTTCAAAGCTTGGTATTTTA 57.267 33.333 0.00 0.00 0.00 1.52
426 467 8.507249 ACTAATTGAAAACTCTATGCAAGACAC 58.493 33.333 0.00 0.00 0.00 3.67
512 588 1.661112 GCCTCTAACAAGTCGCATGAC 59.339 52.381 0.00 0.00 45.86 3.06
523 599 1.301401 GTGTGCGTGGCCTCTAACA 60.301 57.895 3.32 4.77 0.00 2.41
542 618 6.044046 CAGCATTAGCAAGCCAATTAAATGA 58.956 36.000 0.00 0.00 45.49 2.57
647 728 6.741811 CGAATACGCTATCTCGCTATAGTTTT 59.258 38.462 0.84 0.00 32.89 2.43
698 779 2.682856 GTGGGTTAGTGCCATACATGTG 59.317 50.000 9.11 0.00 0.00 3.21
716 797 4.232905 TCAACAGGAGAGGGGTGG 57.767 61.111 0.00 0.00 0.00 4.61
737 818 2.527497 GGGGCTACCTAACTAGCTAGG 58.473 57.143 24.35 16.29 43.70 3.02
760 841 5.681982 GGTGAAGATATGAGAACGTAACTCG 59.318 44.000 14.78 0.00 46.00 4.18
776 857 3.136443 TGGAGTGTGAAGTTGGTGAAGAT 59.864 43.478 0.00 0.00 0.00 2.40
852 958 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
853 959 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
854 960 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
855 961 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
856 962 6.718912 TCATAGAGAGAGAGAGAGAGAGAGAG 59.281 46.154 0.00 0.00 0.00 3.20
857 963 6.614657 TCATAGAGAGAGAGAGAGAGAGAGA 58.385 44.000 0.00 0.00 0.00 3.10
858 964 6.907853 TCATAGAGAGAGAGAGAGAGAGAG 57.092 45.833 0.00 0.00 0.00 3.20
859 965 7.862274 AATCATAGAGAGAGAGAGAGAGAGA 57.138 40.000 0.00 0.00 0.00 3.10
879 985 9.865152 TCCATTCCACAAATGAAGATATAATCA 57.135 29.630 0.00 0.00 46.54 2.57
884 990 8.636213 GTTGATCCATTCCACAAATGAAGATAT 58.364 33.333 0.00 0.00 46.54 1.63
928 1036 7.195839 TGTGTAATTTCATCACAATCAACGA 57.804 32.000 0.00 0.00 38.80 3.85
1023 1131 1.214062 CGAAGCCTGCGAGAGAACT 59.786 57.895 0.00 0.00 0.00 3.01
1032 1144 4.201951 TCGGAATTCGAAGCCTGC 57.798 55.556 15.38 2.97 45.86 4.85
1159 1280 5.181748 AGATTATGAGTCTTCACAACTGCC 58.818 41.667 0.00 0.00 35.83 4.85
1198 1319 1.137513 GGCCGTATGCGTATTCTGAC 58.862 55.000 1.69 0.00 42.61 3.51
1201 1322 1.370064 GGGGCCGTATGCGTATTCT 59.630 57.895 1.69 0.00 42.61 2.40
1297 1421 7.540400 CACACGCACCAAAATAAATTCAGAATA 59.460 33.333 0.00 0.00 0.00 1.75
1376 1500 8.349245 CACACATTTGTCTTTTTATGTAGTCCA 58.651 33.333 0.00 0.00 31.66 4.02
1450 2662 3.336468 TGTGGGCGTCGTACAATTTTAT 58.664 40.909 0.00 0.00 0.00 1.40
1452 2664 1.595466 TGTGGGCGTCGTACAATTTT 58.405 45.000 0.00 0.00 0.00 1.82
1453 2665 1.466950 CATGTGGGCGTCGTACAATTT 59.533 47.619 0.00 0.00 0.00 1.82
1454 2666 1.083489 CATGTGGGCGTCGTACAATT 58.917 50.000 0.00 0.00 0.00 2.32
1455 2667 0.036765 ACATGTGGGCGTCGTACAAT 60.037 50.000 0.00 0.00 0.00 2.71
1488 2701 1.154301 CCACCACATTTACGCGCAC 60.154 57.895 5.73 0.00 0.00 5.34
1492 2705 3.562567 TTAAAGCCACCACATTTACGC 57.437 42.857 0.00 0.00 0.00 4.42
1493 2706 6.642950 TCATTTTTAAAGCCACCACATTTACG 59.357 34.615 0.00 0.00 0.00 3.18
1587 2800 5.869579 TCTCTGCAAAAAGAACCTCTACAT 58.130 37.500 0.00 0.00 0.00 2.29
1633 2846 1.623811 GAGTGTAGCCAGACCTTTCCA 59.376 52.381 0.00 0.00 0.00 3.53
1642 2855 2.886862 CTCCATCTGAGTGTAGCCAG 57.113 55.000 0.00 0.00 36.27 4.85
1690 2903 5.067936 TGGATCATGTTTGGTACGTGTTTTT 59.932 36.000 0.00 0.00 43.07 1.94
1697 2910 7.062138 CAGAATTTTTGGATCATGTTTGGTACG 59.938 37.037 0.00 0.00 0.00 3.67
1701 2914 7.156673 ACTCAGAATTTTTGGATCATGTTTGG 58.843 34.615 0.00 0.00 0.00 3.28
1725 2938 6.459257 TTGTTCATGTTGTGTCACAAAAAC 57.541 33.333 19.77 18.90 40.15 2.43
1754 2969 9.806203 TTTATGGATGAAATTTTGCATGTCTAG 57.194 29.630 7.03 0.00 0.00 2.43
1777 2994 6.757010 GGTGAGAGCTCTTCGAATGTTATTTA 59.243 38.462 19.36 0.00 0.00 1.40
1867 3086 6.071728 CCACAAATAACATTCAAGGAGCTCTT 60.072 38.462 14.64 2.08 35.79 2.85
1918 3138 7.565450 TTTGCGACATGAAACATGATAAAAG 57.435 32.000 16.86 4.47 0.00 2.27
2032 3254 3.492421 AAAGGCACATCGCAATAAGTG 57.508 42.857 0.00 0.00 45.17 3.16
2033 3255 4.261801 AGTAAAGGCACATCGCAATAAGT 58.738 39.130 0.00 0.00 45.17 2.24
2150 3462 5.505819 GGTTTGCAGTTAAGTCTTCAAGGTC 60.506 44.000 0.00 0.00 0.00 3.85
2210 3522 5.434408 TGCTTCAGACATATTCTCTGCAAT 58.566 37.500 0.00 0.00 35.95 3.56
2236 3548 2.452600 TCCCCACTCTGTTTGCTTTT 57.547 45.000 0.00 0.00 0.00 2.27
2447 3759 0.768622 TCGGAAATGGAGTTGGTGGT 59.231 50.000 0.00 0.00 0.00 4.16
2500 3812 1.662608 CAGTGACGTGAGGAGCAGT 59.337 57.895 0.00 0.00 0.00 4.40
2671 3983 0.173481 TCATCAGGGACGCGAAGAAG 59.827 55.000 15.93 0.00 0.00 2.85
2678 3990 1.233019 CCAATGATCATCAGGGACGC 58.767 55.000 9.06 0.00 29.23 5.19
2734 4046 2.545537 AGAAACGGTTCTTCAGGACC 57.454 50.000 10.68 0.00 41.55 4.46
2917 4229 4.251543 TCTTTCACTTCATGTAGCACGA 57.748 40.909 0.00 0.00 0.00 4.35
2994 4306 4.076394 CCGGGGTCTTCTGATTACAAAAA 58.924 43.478 0.00 0.00 0.00 1.94
3008 4323 0.617820 ACAGATACAAGCCGGGGTCT 60.618 55.000 2.18 0.00 0.00 3.85
3009 4324 1.117150 TACAGATACAAGCCGGGGTC 58.883 55.000 2.18 0.00 0.00 4.46
3010 4325 1.575419 TTACAGATACAAGCCGGGGT 58.425 50.000 2.18 0.00 0.00 4.95
3011 4326 2.702592 TTTACAGATACAAGCCGGGG 57.297 50.000 2.18 0.00 0.00 5.73
3012 4327 3.139077 GGATTTACAGATACAAGCCGGG 58.861 50.000 2.18 0.00 0.00 5.73
3042 4357 6.872547 TCAAAATATAGCATGTGCAGCAAAAA 59.127 30.769 7.83 0.00 45.16 1.94
3059 4374 8.469200 CATTACAACTCCATGGTGTCAAAATAT 58.531 33.333 19.33 6.65 44.54 1.28
3085 4401 4.393680 TGCATCAAATTACAAGACCGTACC 59.606 41.667 0.00 0.00 0.00 3.34
3086 4402 5.539582 TGCATCAAATTACAAGACCGTAC 57.460 39.130 0.00 0.00 0.00 3.67
3087 4403 5.295787 GGATGCATCAAATTACAAGACCGTA 59.704 40.000 27.25 0.00 0.00 4.02
3088 4404 4.096382 GGATGCATCAAATTACAAGACCGT 59.904 41.667 27.25 0.00 0.00 4.83
3089 4405 4.601019 GGATGCATCAAATTACAAGACCG 58.399 43.478 27.25 0.00 0.00 4.79
3090 4406 4.335315 TCGGATGCATCAAATTACAAGACC 59.665 41.667 27.25 5.63 0.00 3.85
3091 4407 5.484173 TCGGATGCATCAAATTACAAGAC 57.516 39.130 27.25 5.18 0.00 3.01
3092 4408 5.239306 GGATCGGATGCATCAAATTACAAGA 59.761 40.000 27.25 11.82 0.00 3.02
3093 4409 5.240183 AGGATCGGATGCATCAAATTACAAG 59.760 40.000 27.25 7.36 0.00 3.16
3094 4410 5.132502 AGGATCGGATGCATCAAATTACAA 58.867 37.500 27.25 4.34 0.00 2.41
3095 4411 4.717877 AGGATCGGATGCATCAAATTACA 58.282 39.130 27.25 3.76 0.00 2.41
3096 4412 5.239306 TGAAGGATCGGATGCATCAAATTAC 59.761 40.000 27.25 15.36 0.00 1.89
3097 4413 5.375773 TGAAGGATCGGATGCATCAAATTA 58.624 37.500 27.25 8.38 0.00 1.40
3098 4414 4.209538 TGAAGGATCGGATGCATCAAATT 58.790 39.130 27.25 12.62 0.00 1.82
3099 4415 3.819337 CTGAAGGATCGGATGCATCAAAT 59.181 43.478 27.25 18.93 33.44 2.32
3100 4416 3.208594 CTGAAGGATCGGATGCATCAAA 58.791 45.455 27.25 15.07 33.44 2.69
3135 4451 0.324923 TGAGTATACGCCCCCAGTGT 60.325 55.000 4.03 0.00 43.23 3.55
3138 4454 1.367840 GCTGAGTATACGCCCCCAG 59.632 63.158 4.03 6.15 0.00 4.45
3164 4480 1.406069 GCGGATGTCTGATTGGTGAGT 60.406 52.381 0.00 0.00 0.00 3.41
3170 4486 2.743664 TCTTGTTGCGGATGTCTGATTG 59.256 45.455 0.00 0.00 0.00 2.67
3199 4515 0.877649 AGCTACGCATGCCTCGATTG 60.878 55.000 13.15 0.00 0.00 2.67
3204 4520 0.654683 CAAGAAGCTACGCATGCCTC 59.345 55.000 13.15 0.00 0.00 4.70
3212 4528 9.570488 AGACTAGTAATAAAACAAGAAGCTACG 57.430 33.333 0.00 0.00 0.00 3.51
3234 4550 9.429359 CTTGTGAGATCTACAAACAAATAGACT 57.571 33.333 14.55 0.00 37.56 3.24
3235 4551 9.209175 ACTTGTGAGATCTACAAACAAATAGAC 57.791 33.333 14.55 0.00 37.56 2.59
3236 4552 9.778741 AACTTGTGAGATCTACAAACAAATAGA 57.221 29.630 14.55 0.00 37.56 1.98
3252 4568 9.832445 AAGAGACTTGTAATAAAACTTGTGAGA 57.168 29.630 0.00 0.00 0.00 3.27
3290 4606 9.520204 GAGTATATGTTTAGCGTACCTTGTTTA 57.480 33.333 0.00 0.00 0.00 2.01
3291 4607 8.255905 AGAGTATATGTTTAGCGTACCTTGTTT 58.744 33.333 0.00 0.00 0.00 2.83
3292 4608 7.779073 AGAGTATATGTTTAGCGTACCTTGTT 58.221 34.615 0.00 0.00 0.00 2.83
3293 4609 7.284944 AGAGAGTATATGTTTAGCGTACCTTGT 59.715 37.037 0.00 0.00 0.00 3.16
3294 4610 7.649973 AGAGAGTATATGTTTAGCGTACCTTG 58.350 38.462 0.00 0.00 0.00 3.61
3295 4611 7.820578 AGAGAGTATATGTTTAGCGTACCTT 57.179 36.000 0.00 0.00 0.00 3.50
3296 4612 7.820578 AAGAGAGTATATGTTTAGCGTACCT 57.179 36.000 0.00 0.00 0.00 3.08
3297 4613 7.919621 ACAAAGAGAGTATATGTTTAGCGTACC 59.080 37.037 0.00 0.00 0.00 3.34
3298 4614 8.853469 ACAAAGAGAGTATATGTTTAGCGTAC 57.147 34.615 0.00 0.00 0.00 3.67
3299 4615 8.133627 GGACAAAGAGAGTATATGTTTAGCGTA 58.866 37.037 0.00 0.00 0.00 4.42
3300 4616 6.979238 GGACAAAGAGAGTATATGTTTAGCGT 59.021 38.462 0.00 0.00 0.00 5.07
3301 4617 6.142480 CGGACAAAGAGAGTATATGTTTAGCG 59.858 42.308 0.00 0.00 0.00 4.26
3302 4618 7.201145 TCGGACAAAGAGAGTATATGTTTAGC 58.799 38.462 0.00 0.00 0.00 3.09
3303 4619 9.582431 TTTCGGACAAAGAGAGTATATGTTTAG 57.418 33.333 0.00 0.00 0.00 1.85
3307 4623 9.530633 GTTATTTCGGACAAAGAGAGTATATGT 57.469 33.333 0.00 0.00 0.00 2.29
3308 4624 9.751542 AGTTATTTCGGACAAAGAGAGTATATG 57.248 33.333 0.00 0.00 0.00 1.78
3310 4626 9.582431 CAAGTTATTTCGGACAAAGAGAGTATA 57.418 33.333 0.00 0.00 0.00 1.47
3311 4627 8.095169 ACAAGTTATTTCGGACAAAGAGAGTAT 58.905 33.333 0.00 0.00 0.00 2.12
3312 4628 7.439381 ACAAGTTATTTCGGACAAAGAGAGTA 58.561 34.615 0.00 0.00 0.00 2.59
3313 4629 6.289064 ACAAGTTATTTCGGACAAAGAGAGT 58.711 36.000 0.00 0.00 0.00 3.24
3314 4630 6.647067 AGACAAGTTATTTCGGACAAAGAGAG 59.353 38.462 0.00 0.00 0.00 3.20
3315 4631 6.522054 AGACAAGTTATTTCGGACAAAGAGA 58.478 36.000 0.00 0.00 0.00 3.10
3316 4632 6.423905 TGAGACAAGTTATTTCGGACAAAGAG 59.576 38.462 0.00 0.00 0.00 2.85
3317 4633 6.285224 TGAGACAAGTTATTTCGGACAAAGA 58.715 36.000 0.00 0.00 0.00 2.52
3318 4634 6.539649 TGAGACAAGTTATTTCGGACAAAG 57.460 37.500 0.00 0.00 0.00 2.77
3319 4635 6.928979 TTGAGACAAGTTATTTCGGACAAA 57.071 33.333 0.00 0.00 0.00 2.83
3320 4636 6.540914 AGTTTGAGACAAGTTATTTCGGACAA 59.459 34.615 0.00 0.00 0.00 3.18
3321 4637 6.053005 AGTTTGAGACAAGTTATTTCGGACA 58.947 36.000 0.00 0.00 0.00 4.02
3322 4638 6.541111 AGTTTGAGACAAGTTATTTCGGAC 57.459 37.500 0.00 0.00 0.00 4.79
3323 4639 6.540914 ACAAGTTTGAGACAAGTTATTTCGGA 59.459 34.615 0.00 0.00 0.00 4.55
3324 4640 6.725246 ACAAGTTTGAGACAAGTTATTTCGG 58.275 36.000 0.00 0.00 0.00 4.30
3325 4641 8.614994 AAACAAGTTTGAGACAAGTTATTTCG 57.385 30.769 0.00 0.00 30.52 3.46
3326 4642 9.788960 AGAAACAAGTTTGAGACAAGTTATTTC 57.211 29.630 2.45 0.00 32.11 2.17
3327 4643 9.788960 GAGAAACAAGTTTGAGACAAGTTATTT 57.211 29.630 2.45 0.00 32.11 1.40
3328 4644 8.956426 TGAGAAACAAGTTTGAGACAAGTTATT 58.044 29.630 2.45 0.00 32.11 1.40
3329 4645 8.506168 TGAGAAACAAGTTTGAGACAAGTTAT 57.494 30.769 2.45 0.00 32.11 1.89
3330 4646 7.915293 TGAGAAACAAGTTTGAGACAAGTTA 57.085 32.000 2.45 0.00 32.11 2.24
3331 4647 6.817765 TGAGAAACAAGTTTGAGACAAGTT 57.182 33.333 2.45 0.00 32.11 2.66
3332 4648 6.817765 TTGAGAAACAAGTTTGAGACAAGT 57.182 33.333 2.45 0.00 34.20 3.16
3333 4649 6.249260 CGTTTGAGAAACAAGTTTGAGACAAG 59.751 38.462 2.45 0.00 41.44 3.16
3334 4650 6.083630 CGTTTGAGAAACAAGTTTGAGACAA 58.916 36.000 2.45 2.19 41.44 3.18
3335 4651 5.391523 CCGTTTGAGAAACAAGTTTGAGACA 60.392 40.000 2.45 0.00 41.44 3.41
3336 4652 5.028375 CCGTTTGAGAAACAAGTTTGAGAC 58.972 41.667 2.45 0.00 41.44 3.36
3337 4653 4.938832 TCCGTTTGAGAAACAAGTTTGAGA 59.061 37.500 2.45 0.00 41.44 3.27
3338 4654 5.229921 TCCGTTTGAGAAACAAGTTTGAG 57.770 39.130 2.45 0.00 41.44 3.02
3339 4655 5.124776 ACATCCGTTTGAGAAACAAGTTTGA 59.875 36.000 2.45 0.00 41.44 2.69
3340 4656 5.339990 ACATCCGTTTGAGAAACAAGTTTG 58.660 37.500 2.45 0.00 41.44 2.93
3341 4657 5.576447 ACATCCGTTTGAGAAACAAGTTT 57.424 34.783 0.00 0.00 41.44 2.66
3342 4658 6.710744 AGATACATCCGTTTGAGAAACAAGTT 59.289 34.615 0.00 0.00 41.44 2.66
3343 4659 6.231211 AGATACATCCGTTTGAGAAACAAGT 58.769 36.000 0.00 0.00 41.44 3.16
3344 4660 6.727824 AGATACATCCGTTTGAGAAACAAG 57.272 37.500 0.00 0.00 41.44 3.16
3345 4661 6.312918 GCTAGATACATCCGTTTGAGAAACAA 59.687 38.462 0.00 0.00 41.44 2.83
3346 4662 5.810587 GCTAGATACATCCGTTTGAGAAACA 59.189 40.000 0.00 0.00 41.44 2.83
3347 4663 5.810587 TGCTAGATACATCCGTTTGAGAAAC 59.189 40.000 0.00 0.00 38.02 2.78
3348 4664 5.810587 GTGCTAGATACATCCGTTTGAGAAA 59.189 40.000 0.00 0.00 0.00 2.52
3349 4665 5.127194 AGTGCTAGATACATCCGTTTGAGAA 59.873 40.000 0.00 0.00 0.00 2.87
3350 4666 4.645136 AGTGCTAGATACATCCGTTTGAGA 59.355 41.667 0.00 0.00 0.00 3.27
3351 4667 4.938080 AGTGCTAGATACATCCGTTTGAG 58.062 43.478 0.00 0.00 0.00 3.02
3352 4668 6.096423 AGTTAGTGCTAGATACATCCGTTTGA 59.904 38.462 0.00 0.00 0.00 2.69
3353 4669 6.273825 AGTTAGTGCTAGATACATCCGTTTG 58.726 40.000 0.00 0.00 0.00 2.93
3354 4670 6.466885 AGTTAGTGCTAGATACATCCGTTT 57.533 37.500 0.00 0.00 0.00 3.60
3355 4671 6.273825 CAAGTTAGTGCTAGATACATCCGTT 58.726 40.000 0.00 0.00 0.00 4.44
3356 4672 5.221263 CCAAGTTAGTGCTAGATACATCCGT 60.221 44.000 0.00 0.00 0.00 4.69
3357 4673 5.221263 ACCAAGTTAGTGCTAGATACATCCG 60.221 44.000 0.00 0.00 0.00 4.18
3358 4674 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3370 4686 7.849804 AAATGTATCTAGCACCAAGTTAGTG 57.150 36.000 0.00 0.00 38.30 2.74
3374 4690 9.461312 TCAAATAAATGTATCTAGCACCAAGTT 57.539 29.630 0.00 0.00 0.00 2.66
3375 4691 9.113838 CTCAAATAAATGTATCTAGCACCAAGT 57.886 33.333 0.00 0.00 0.00 3.16
3376 4692 8.562892 CCTCAAATAAATGTATCTAGCACCAAG 58.437 37.037 0.00 0.00 0.00 3.61
3377 4693 7.502226 CCCTCAAATAAATGTATCTAGCACCAA 59.498 37.037 0.00 0.00 0.00 3.67
3378 4694 6.998074 CCCTCAAATAAATGTATCTAGCACCA 59.002 38.462 0.00 0.00 0.00 4.17
3379 4695 7.173390 GTCCCTCAAATAAATGTATCTAGCACC 59.827 40.741 0.00 0.00 0.00 5.01
3380 4696 7.715249 TGTCCCTCAAATAAATGTATCTAGCAC 59.285 37.037 0.00 0.00 0.00 4.40
3381 4697 7.801104 TGTCCCTCAAATAAATGTATCTAGCA 58.199 34.615 0.00 0.00 0.00 3.49
3382 4698 8.677148 TTGTCCCTCAAATAAATGTATCTAGC 57.323 34.615 0.00 0.00 32.64 3.42
3383 4699 8.778358 GCTTGTCCCTCAAATAAATGTATCTAG 58.222 37.037 0.00 0.00 35.48 2.43
3384 4700 8.494433 AGCTTGTCCCTCAAATAAATGTATCTA 58.506 33.333 0.00 0.00 35.48 1.98
3385 4701 7.349598 AGCTTGTCCCTCAAATAAATGTATCT 58.650 34.615 0.00 0.00 35.48 1.98
3386 4702 7.573968 AGCTTGTCCCTCAAATAAATGTATC 57.426 36.000 0.00 0.00 35.48 2.24
3387 4703 7.961326 AAGCTTGTCCCTCAAATAAATGTAT 57.039 32.000 0.00 0.00 35.48 2.29
3388 4704 7.775053 AAAGCTTGTCCCTCAAATAAATGTA 57.225 32.000 0.00 0.00 35.48 2.29
3389 4705 6.670695 AAAGCTTGTCCCTCAAATAAATGT 57.329 33.333 0.00 0.00 35.48 2.71
3390 4706 7.148755 CGAAAAAGCTTGTCCCTCAAATAAATG 60.149 37.037 0.00 0.00 35.48 2.32
3391 4707 6.868339 CGAAAAAGCTTGTCCCTCAAATAAAT 59.132 34.615 0.00 0.00 35.48 1.40
3392 4708 6.039941 TCGAAAAAGCTTGTCCCTCAAATAAA 59.960 34.615 0.00 0.00 35.48 1.40
3393 4709 5.533154 TCGAAAAAGCTTGTCCCTCAAATAA 59.467 36.000 0.00 0.00 35.48 1.40
3394 4710 5.067273 TCGAAAAAGCTTGTCCCTCAAATA 58.933 37.500 0.00 0.00 35.48 1.40
3395 4711 3.888930 TCGAAAAAGCTTGTCCCTCAAAT 59.111 39.130 0.00 0.00 35.48 2.32
3396 4712 3.283751 TCGAAAAAGCTTGTCCCTCAAA 58.716 40.909 0.00 0.00 35.48 2.69
3397 4713 2.925724 TCGAAAAAGCTTGTCCCTCAA 58.074 42.857 0.00 0.00 34.61 3.02
3398 4714 2.631160 TCGAAAAAGCTTGTCCCTCA 57.369 45.000 0.00 0.00 0.00 3.86
3399 4715 3.366374 CCATTCGAAAAAGCTTGTCCCTC 60.366 47.826 0.00 0.00 0.00 4.30
3400 4716 2.558359 CCATTCGAAAAAGCTTGTCCCT 59.442 45.455 0.00 0.00 0.00 4.20
3401 4717 2.556622 TCCATTCGAAAAAGCTTGTCCC 59.443 45.455 0.00 0.00 0.00 4.46
3402 4718 3.502211 TCTCCATTCGAAAAAGCTTGTCC 59.498 43.478 0.00 0.00 0.00 4.02
3403 4719 4.452455 TCTCTCCATTCGAAAAAGCTTGTC 59.548 41.667 0.00 0.00 0.00 3.18
3404 4720 4.389374 TCTCTCCATTCGAAAAAGCTTGT 58.611 39.130 0.00 0.00 0.00 3.16
3405 4721 4.453819 ACTCTCTCCATTCGAAAAAGCTTG 59.546 41.667 0.00 0.00 0.00 4.01
3406 4722 4.646572 ACTCTCTCCATTCGAAAAAGCTT 58.353 39.130 0.00 0.00 0.00 3.74
3407 4723 4.278975 ACTCTCTCCATTCGAAAAAGCT 57.721 40.909 0.00 0.00 0.00 3.74
3408 4724 6.670077 AATACTCTCTCCATTCGAAAAAGC 57.330 37.500 0.00 0.00 0.00 3.51
3409 4725 9.757227 AGATAATACTCTCTCCATTCGAAAAAG 57.243 33.333 0.00 0.00 0.00 2.27
3410 4726 9.534565 CAGATAATACTCTCTCCATTCGAAAAA 57.465 33.333 0.00 0.00 0.00 1.94
3411 4727 7.653713 GCAGATAATACTCTCTCCATTCGAAAA 59.346 37.037 0.00 0.00 0.00 2.29
3412 4728 7.148641 GCAGATAATACTCTCTCCATTCGAAA 58.851 38.462 0.00 0.00 0.00 3.46
3413 4729 6.265422 TGCAGATAATACTCTCTCCATTCGAA 59.735 38.462 0.00 0.00 0.00 3.71
3414 4730 5.770162 TGCAGATAATACTCTCTCCATTCGA 59.230 40.000 0.00 0.00 0.00 3.71
3415 4731 6.018589 TGCAGATAATACTCTCTCCATTCG 57.981 41.667 0.00 0.00 0.00 3.34
3416 4732 7.331440 CACATGCAGATAATACTCTCTCCATTC 59.669 40.741 0.00 0.00 0.00 2.67
3417 4733 7.160049 CACATGCAGATAATACTCTCTCCATT 58.840 38.462 0.00 0.00 0.00 3.16
3418 4734 6.269538 ACACATGCAGATAATACTCTCTCCAT 59.730 38.462 0.00 0.00 0.00 3.41
3419 4735 5.600069 ACACATGCAGATAATACTCTCTCCA 59.400 40.000 0.00 0.00 0.00 3.86
3420 4736 5.925397 CACACATGCAGATAATACTCTCTCC 59.075 44.000 0.00 0.00 0.00 3.71
3437 4753 1.011904 GACGCGCTATGCACACATG 60.012 57.895 5.73 0.00 46.97 3.21
3438 4754 0.102300 TAGACGCGCTATGCACACAT 59.898 50.000 5.73 0.00 46.97 3.21
3439 4755 0.525455 CTAGACGCGCTATGCACACA 60.525 55.000 5.73 0.00 46.97 3.72
3440 4756 0.525668 ACTAGACGCGCTATGCACAC 60.526 55.000 5.73 0.00 46.97 3.82
3441 4757 0.248498 GACTAGACGCGCTATGCACA 60.248 55.000 5.73 0.00 46.97 4.57
3442 4758 0.248498 TGACTAGACGCGCTATGCAC 60.248 55.000 5.73 2.11 46.97 4.57
3443 4759 0.248498 GTGACTAGACGCGCTATGCA 60.248 55.000 5.73 7.14 46.97 3.96
3444 4760 0.248498 TGTGACTAGACGCGCTATGC 60.248 55.000 5.73 4.68 41.47 3.14
3445 4761 2.407521 ATGTGACTAGACGCGCTATG 57.592 50.000 5.73 5.87 0.00 2.23
3446 4762 3.751698 TGATATGTGACTAGACGCGCTAT 59.248 43.478 5.73 0.00 0.00 2.97
3447 4763 3.135994 TGATATGTGACTAGACGCGCTA 58.864 45.455 5.73 8.11 0.00 4.26
3448 4764 1.947456 TGATATGTGACTAGACGCGCT 59.053 47.619 5.73 7.21 0.00 5.92
3449 4765 2.031944 TCTGATATGTGACTAGACGCGC 60.032 50.000 5.73 0.00 0.00 6.86
3450 4766 3.546617 GTCTGATATGTGACTAGACGCG 58.453 50.000 3.53 3.53 0.00 6.01
3451 4767 3.607310 CGGTCTGATATGTGACTAGACGC 60.607 52.174 0.00 0.00 38.84 5.19
3452 4768 3.607310 GCGGTCTGATATGTGACTAGACG 60.607 52.174 0.00 0.00 38.84 4.18
3453 4769 3.566322 AGCGGTCTGATATGTGACTAGAC 59.434 47.826 0.00 0.00 37.60 2.59
3454 4770 3.821748 AGCGGTCTGATATGTGACTAGA 58.178 45.455 0.00 0.00 34.01 2.43
3455 4771 5.239744 AGTTAGCGGTCTGATATGTGACTAG 59.760 44.000 0.00 0.00 34.01 2.57
3456 4772 5.131067 AGTTAGCGGTCTGATATGTGACTA 58.869 41.667 0.00 0.00 34.01 2.59
3457 4773 3.954904 AGTTAGCGGTCTGATATGTGACT 59.045 43.478 0.00 0.00 34.01 3.41
3458 4774 4.308899 AGTTAGCGGTCTGATATGTGAC 57.691 45.455 0.00 0.00 0.00 3.67
3459 4775 5.339008 AAAGTTAGCGGTCTGATATGTGA 57.661 39.130 0.00 0.00 0.00 3.58
3460 4776 6.422776 AAAAAGTTAGCGGTCTGATATGTG 57.577 37.500 0.00 0.00 0.00 3.21
3553 4870 6.569179 TGTATGGCTTTTTAAGGTCTTGTC 57.431 37.500 0.00 0.00 0.00 3.18
3565 4882 5.852282 AGTCTTGTTGTTGTATGGCTTTT 57.148 34.783 0.00 0.00 0.00 2.27
3593 4911 5.047847 GCGATAGTTGTTGCTTAGATGGTA 58.952 41.667 0.00 0.00 39.35 3.25
3597 4915 5.749109 GTGTAGCGATAGTTGTTGCTTAGAT 59.251 40.000 0.00 0.00 39.52 1.98
3654 4972 4.683400 CGATGTCTGTTTGGTATTAGGCCT 60.683 45.833 11.78 11.78 0.00 5.19
3681 4999 7.074653 TCAGGTCTTAGATGTTTAGGTTTGT 57.925 36.000 0.00 0.00 0.00 2.83
3773 5091 1.148273 GGCATCAATACCCGGCAGA 59.852 57.895 0.00 0.00 0.00 4.26
3785 5103 4.830765 GTGGCTACGGCGGCATCA 62.831 66.667 13.24 1.09 41.72 3.07
3832 5150 0.796312 CTGACACGGTACATGCAACC 59.204 55.000 7.61 7.61 0.00 3.77
3905 5223 1.903877 CGCTGTGGGAGGATGGACTT 61.904 60.000 0.00 0.00 0.00 3.01
3951 5269 1.478916 TGATGGCGACGGATCTTAACA 59.521 47.619 0.00 0.00 0.00 2.41
4011 5330 4.289672 ACACACTTAATCAAGGGACCAGAT 59.710 41.667 0.00 0.00 37.36 2.90
4022 5341 6.428083 TTCTTGGAGGTACACACTTAATCA 57.572 37.500 0.00 0.00 0.00 2.57
4026 5345 5.566032 CGTCATTCTTGGAGGTACACACTTA 60.566 44.000 0.00 0.00 0.00 2.24
4028 5347 3.306088 CGTCATTCTTGGAGGTACACACT 60.306 47.826 0.00 0.00 0.00 3.55
4116 5435 0.108424 GCCACTCTCTGCTACCACTG 60.108 60.000 0.00 0.00 0.00 3.66
4119 5438 0.545309 AAGGCCACTCTCTGCTACCA 60.545 55.000 5.01 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.