Multiple sequence alignment - TraesCS6B01G434900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G434900 chr6B 100.000 6923 0 0 1 6923 703282589 703289511 0.000000e+00 12785.0
1 TraesCS6B01G434900 chr6D 94.058 6160 193 68 835 6923 461449559 461455616 0.000000e+00 9188.0
2 TraesCS6B01G434900 chr6D 91.803 61 5 0 547 607 461449342 461449402 1.240000e-12 86.1
3 TraesCS6B01G434900 chr6A 94.297 4822 154 37 2176 6923 608114499 608119273 0.000000e+00 7269.0
4 TraesCS6B01G434900 chr6A 92.194 1358 50 32 814 2145 608113172 608114499 0.000000e+00 1869.0
5 TraesCS6B01G434900 chr6A 90.789 304 25 3 12 313 608112767 608113069 3.010000e-108 403.0
6 TraesCS6B01G434900 chrUn 85.859 297 42 0 5134 5430 93449296 93449000 4.030000e-82 316.0
7 TraesCS6B01G434900 chrUn 84.615 208 29 2 1776 1980 93453549 93453342 3.270000e-48 204.0
8 TraesCS6B01G434900 chr7B 85.522 297 43 0 5134 5430 743145591 743145887 1.880000e-80 311.0
9 TraesCS6B01G434900 chr7B 76.258 497 99 14 4311 4802 743144521 743145003 5.360000e-61 246.0
10 TraesCS6B01G434900 chr7B 83.173 208 32 2 1776 1980 743142071 743142278 3.300000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G434900 chr6B 703282589 703289511 6922 False 12785.000000 12785 100.000000 1 6923 1 chr6B.!!$F1 6922
1 TraesCS6B01G434900 chr6D 461449342 461455616 6274 False 4637.050000 9188 92.930500 547 6923 2 chr6D.!!$F1 6376
2 TraesCS6B01G434900 chr6A 608112767 608119273 6506 False 3180.333333 7269 92.426667 12 6923 3 chr6A.!!$F1 6911
3 TraesCS6B01G434900 chr7B 743142071 743145887 3816 False 248.000000 311 81.651000 1776 5430 3 chr7B.!!$F1 3654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 508 0.039256 TTGTCGTTAGCGCGTTAGGT 60.039 50.0 8.43 0.00 38.14 3.08 F
1370 1401 0.105964 TACGTGCATGCATACCCTCC 59.894 55.0 25.64 7.95 0.00 4.30 F
2759 2833 0.177604 CTCCGCAGCCTTCTTGATCT 59.822 55.0 0.00 0.00 0.00 2.75 F
3298 3430 0.033228 CCGACATGATGAGCTCCCTC 59.967 60.0 12.15 8.82 38.62 4.30 F
5060 5370 0.177836 GCCTGCCTTCTCTTCCTCTC 59.822 60.0 0.00 0.00 0.00 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2382 2456 0.179009 AGTTGTCAGCACTGCCACAT 60.179 50.0 0.00 0.0 0.0 3.21 R
3247 3379 0.034863 TTTTACCAGCCCCATCCGTC 60.035 55.0 0.00 0.0 0.0 4.79 R
3599 3737 0.034767 CCAGGCATGAGCTTTCCTGA 60.035 55.0 19.56 0.0 46.8 3.86 R
5064 5374 0.326264 ATATGCGGATTCAGGGCTCC 59.674 55.0 0.00 0.0 0.0 4.70 R
6897 7345 0.028242 CGTCGACCCTGAAGATCTCG 59.972 60.0 10.58 0.0 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.859090 ACATGTTCAGGAAAATGTTCATAAGAA 58.141 29.630 11.21 0.00 44.53 2.52
80 82 8.627208 AGAACATCAATTTGTGAGTCTATGTT 57.373 30.769 9.03 9.03 40.43 2.71
86 88 8.394971 TCAATTTGTGAGTCTATGTTTGATGT 57.605 30.769 0.00 0.00 0.00 3.06
87 89 8.506437 TCAATTTGTGAGTCTATGTTTGATGTC 58.494 33.333 0.00 0.00 0.00 3.06
92 94 7.216494 TGTGAGTCTATGTTTGATGTCTTTGA 58.784 34.615 0.00 0.00 0.00 2.69
96 98 7.227156 AGTCTATGTTTGATGTCTTTGAACCT 58.773 34.615 0.00 0.00 0.00 3.50
102 104 3.565307 TGATGTCTTTGAACCTTTGGCT 58.435 40.909 0.00 0.00 0.00 4.75
111 113 6.945435 TCTTTGAACCTTTGGCTACAATATCA 59.055 34.615 0.00 0.00 36.29 2.15
121 123 5.005740 TGGCTACAATATCATTCATGAGCC 58.994 41.667 7.13 7.13 40.64 4.70
137 139 4.734398 TGAGCCATTTTTGAAGTGTTGT 57.266 36.364 0.00 0.00 0.00 3.32
169 171 4.802051 CTGCCACATGGGACCCCG 62.802 72.222 8.45 1.15 40.01 5.73
188 190 3.262686 GCGGCGGTAGCTTGTAGC 61.263 66.667 9.78 0.00 44.37 3.58
206 208 0.248621 GCGATTTGGTGGTAGCATGC 60.249 55.000 10.51 10.51 0.00 4.06
219 221 3.984292 GCATGCAGCTTGTAGTGAC 57.016 52.632 14.21 0.00 41.15 3.67
230 232 3.195825 GCTTGTAGTGACTGGGATACTGT 59.804 47.826 0.00 0.00 0.00 3.55
231 233 4.401519 GCTTGTAGTGACTGGGATACTGTA 59.598 45.833 0.00 0.00 0.00 2.74
314 316 3.665544 GCAGCAAGCACCTCAAAAA 57.334 47.368 0.00 0.00 44.79 1.94
341 343 9.598517 ACATTGAACAGAATACAAAATGTTGTT 57.401 25.926 6.57 0.00 46.01 2.83
342 344 9.852481 CATTGAACAGAATACAAAATGTTGTTG 57.148 29.630 6.57 1.53 46.01 3.33
343 345 8.994429 TTGAACAGAATACAAAATGTTGTTGT 57.006 26.923 6.57 2.21 46.01 3.32
344 346 8.994429 TGAACAGAATACAAAATGTTGTTGTT 57.006 26.923 13.84 13.84 46.01 2.83
345 347 8.867935 TGAACAGAATACAAAATGTTGTTGTTG 58.132 29.630 17.35 9.72 46.01 3.33
346 348 8.770438 AACAGAATACAAAATGTTGTTGTTGT 57.230 26.923 13.37 8.25 46.01 3.32
347 349 9.862371 AACAGAATACAAAATGTTGTTGTTGTA 57.138 25.926 13.37 0.00 46.01 2.41
348 350 9.296400 ACAGAATACAAAATGTTGTTGTTGTAC 57.704 29.630 6.57 0.00 46.01 2.90
349 351 9.295214 CAGAATACAAAATGTTGTTGTTGTACA 57.705 29.630 6.57 0.00 46.01 2.90
354 356 8.406172 ACAAAATGTTGTTGTTGTACATTCTC 57.594 30.769 0.00 0.00 46.01 2.87
355 357 7.491048 ACAAAATGTTGTTGTTGTACATTCTCC 59.509 33.333 0.00 0.00 46.01 3.71
356 358 6.959639 AATGTTGTTGTTGTACATTCTCCT 57.040 33.333 0.00 0.00 37.85 3.69
357 359 6.560253 ATGTTGTTGTTGTACATTCTCCTC 57.440 37.500 0.00 0.00 0.00 3.71
358 360 4.819630 TGTTGTTGTTGTACATTCTCCTCC 59.180 41.667 0.00 0.00 0.00 4.30
359 361 4.698201 TGTTGTTGTACATTCTCCTCCA 57.302 40.909 0.00 0.00 0.00 3.86
360 362 4.641396 TGTTGTTGTACATTCTCCTCCAG 58.359 43.478 0.00 0.00 0.00 3.86
361 363 3.981071 TGTTGTACATTCTCCTCCAGG 57.019 47.619 0.00 0.00 0.00 4.45
362 364 3.248024 TGTTGTACATTCTCCTCCAGGT 58.752 45.455 0.00 0.00 36.34 4.00
363 365 3.650942 TGTTGTACATTCTCCTCCAGGTT 59.349 43.478 0.00 0.00 36.34 3.50
364 366 4.254492 GTTGTACATTCTCCTCCAGGTTC 58.746 47.826 0.00 0.00 36.34 3.62
365 367 2.496070 TGTACATTCTCCTCCAGGTTCG 59.504 50.000 0.00 0.00 36.34 3.95
366 368 1.938585 ACATTCTCCTCCAGGTTCGA 58.061 50.000 0.00 0.00 36.34 3.71
367 369 1.827969 ACATTCTCCTCCAGGTTCGAG 59.172 52.381 0.00 0.00 36.34 4.04
369 371 0.114560 TTCTCCTCCAGGTTCGAGGT 59.885 55.000 3.90 0.00 46.09 3.85
370 372 0.114560 TCTCCTCCAGGTTCGAGGTT 59.885 55.000 3.90 0.00 46.09 3.50
371 373 1.356738 TCTCCTCCAGGTTCGAGGTTA 59.643 52.381 3.90 0.00 46.09 2.85
372 374 2.024273 TCTCCTCCAGGTTCGAGGTTAT 60.024 50.000 3.90 0.00 46.09 1.89
373 375 2.362717 CTCCTCCAGGTTCGAGGTTATC 59.637 54.545 3.90 0.00 46.09 1.75
374 376 1.413077 CCTCCAGGTTCGAGGTTATCC 59.587 57.143 0.00 0.00 41.81 2.59
375 377 5.241004 TCCTCCAGGTTCGAGGTTATCCT 62.241 52.174 3.90 0.00 46.09 3.24
376 378 2.101582 CTCCAGGTTCGAGGTTATCCTG 59.898 54.545 0.00 0.00 45.24 3.86
377 379 1.473434 CCAGGTTCGAGGTTATCCTGC 60.473 57.143 0.00 0.00 45.24 4.85
378 380 0.831307 AGGTTCGAGGTTATCCTGCC 59.169 55.000 0.00 0.00 45.24 4.85
379 381 0.529992 GGTTCGAGGTTATCCTGCCG 60.530 60.000 0.00 0.00 45.24 5.69
380 382 1.143183 TTCGAGGTTATCCTGCCGC 59.857 57.895 0.00 0.00 45.24 6.53
381 383 2.622903 TTCGAGGTTATCCTGCCGCG 62.623 60.000 0.00 0.00 45.24 6.46
382 384 2.967615 GAGGTTATCCTGCCGCGC 60.968 66.667 0.00 0.00 45.24 6.86
383 385 3.733344 GAGGTTATCCTGCCGCGCA 62.733 63.158 8.75 1.04 45.24 6.09
384 386 2.591715 GGTTATCCTGCCGCGCAT 60.592 61.111 8.75 0.00 38.13 4.73
385 387 2.633657 GTTATCCTGCCGCGCATG 59.366 61.111 8.75 0.00 38.13 4.06
386 388 1.887242 GTTATCCTGCCGCGCATGA 60.887 57.895 8.75 5.77 38.13 3.07
387 389 1.595109 TTATCCTGCCGCGCATGAG 60.595 57.895 8.75 0.00 36.72 2.90
388 390 2.026945 TTATCCTGCCGCGCATGAGA 62.027 55.000 8.75 0.00 36.72 3.27
389 391 2.426122 TATCCTGCCGCGCATGAGAG 62.426 60.000 8.75 0.00 36.72 3.20
391 393 4.519437 CTGCCGCGCATGAGAGGA 62.519 66.667 22.72 7.21 38.13 3.71
392 394 4.819761 TGCCGCGCATGAGAGGAC 62.820 66.667 22.72 13.73 31.71 3.85
394 396 4.193334 CCGCGCATGAGAGGACGA 62.193 66.667 13.94 0.00 32.51 4.20
395 397 2.653448 CGCGCATGAGAGGACGAG 60.653 66.667 8.75 0.00 0.00 4.18
396 398 2.279120 GCGCATGAGAGGACGAGG 60.279 66.667 0.30 0.00 0.00 4.63
397 399 2.775856 GCGCATGAGAGGACGAGGA 61.776 63.158 0.30 0.00 0.00 3.71
398 400 1.358402 CGCATGAGAGGACGAGGAG 59.642 63.158 0.00 0.00 0.00 3.69
399 401 1.098129 CGCATGAGAGGACGAGGAGA 61.098 60.000 0.00 0.00 0.00 3.71
400 402 0.667993 GCATGAGAGGACGAGGAGAG 59.332 60.000 0.00 0.00 0.00 3.20
401 403 2.021723 GCATGAGAGGACGAGGAGAGT 61.022 57.143 0.00 0.00 0.00 3.24
402 404 2.374184 CATGAGAGGACGAGGAGAGTT 58.626 52.381 0.00 0.00 0.00 3.01
403 405 2.588464 TGAGAGGACGAGGAGAGTTT 57.412 50.000 0.00 0.00 0.00 2.66
404 406 2.877866 TGAGAGGACGAGGAGAGTTTT 58.122 47.619 0.00 0.00 0.00 2.43
405 407 3.231818 TGAGAGGACGAGGAGAGTTTTT 58.768 45.455 0.00 0.00 0.00 1.94
406 408 4.404640 TGAGAGGACGAGGAGAGTTTTTA 58.595 43.478 0.00 0.00 0.00 1.52
407 409 4.217983 TGAGAGGACGAGGAGAGTTTTTAC 59.782 45.833 0.00 0.00 0.00 2.01
408 410 4.150359 AGAGGACGAGGAGAGTTTTTACA 58.850 43.478 0.00 0.00 0.00 2.41
409 411 4.773149 AGAGGACGAGGAGAGTTTTTACAT 59.227 41.667 0.00 0.00 0.00 2.29
410 412 5.950549 AGAGGACGAGGAGAGTTTTTACATA 59.049 40.000 0.00 0.00 0.00 2.29
411 413 6.095720 AGAGGACGAGGAGAGTTTTTACATAG 59.904 42.308 0.00 0.00 0.00 2.23
412 414 5.715753 AGGACGAGGAGAGTTTTTACATAGT 59.284 40.000 0.00 0.00 0.00 2.12
413 415 5.805994 GGACGAGGAGAGTTTTTACATAGTG 59.194 44.000 0.00 0.00 0.00 2.74
414 416 6.342338 ACGAGGAGAGTTTTTACATAGTGT 57.658 37.500 0.00 0.00 0.00 3.55
415 417 6.756221 ACGAGGAGAGTTTTTACATAGTGTT 58.244 36.000 0.00 0.00 0.00 3.32
416 418 7.889469 ACGAGGAGAGTTTTTACATAGTGTTA 58.111 34.615 0.00 0.00 0.00 2.41
417 419 7.811713 ACGAGGAGAGTTTTTACATAGTGTTAC 59.188 37.037 0.00 0.00 0.00 2.50
418 420 7.811236 CGAGGAGAGTTTTTACATAGTGTTACA 59.189 37.037 0.00 0.00 0.00 2.41
419 421 9.485206 GAGGAGAGTTTTTACATAGTGTTACAA 57.515 33.333 0.00 0.00 0.00 2.41
423 425 9.569122 AGAGTTTTTACATAGTGTTACAATGGT 57.431 29.630 0.00 0.00 0.00 3.55
424 426 9.821662 GAGTTTTTACATAGTGTTACAATGGTC 57.178 33.333 0.00 0.00 0.00 4.02
425 427 8.500773 AGTTTTTACATAGTGTTACAATGGTCG 58.499 33.333 0.00 0.00 0.00 4.79
426 428 7.966246 TTTTACATAGTGTTACAATGGTCGT 57.034 32.000 0.00 0.00 0.00 4.34
427 429 7.966246 TTTACATAGTGTTACAATGGTCGTT 57.034 32.000 0.00 0.00 0.00 3.85
428 430 9.486497 TTTTACATAGTGTTACAATGGTCGTTA 57.514 29.630 0.00 0.00 0.00 3.18
429 431 8.692110 TTACATAGTGTTACAATGGTCGTTAG 57.308 34.615 0.00 0.00 0.00 2.34
430 432 6.694447 ACATAGTGTTACAATGGTCGTTAGT 58.306 36.000 0.00 0.00 0.00 2.24
431 433 6.588756 ACATAGTGTTACAATGGTCGTTAGTG 59.411 38.462 0.00 0.00 0.00 2.74
432 434 4.952460 AGTGTTACAATGGTCGTTAGTGT 58.048 39.130 0.00 0.00 0.00 3.55
433 435 6.088016 AGTGTTACAATGGTCGTTAGTGTA 57.912 37.500 0.00 0.00 0.00 2.90
434 436 5.922544 AGTGTTACAATGGTCGTTAGTGTAC 59.077 40.000 0.00 0.00 29.54 2.90
435 437 5.119125 GTGTTACAATGGTCGTTAGTGTACC 59.881 44.000 0.00 0.00 29.54 3.34
436 438 5.010922 TGTTACAATGGTCGTTAGTGTACCT 59.989 40.000 0.00 0.00 34.23 3.08
437 439 6.208402 TGTTACAATGGTCGTTAGTGTACCTA 59.792 38.462 0.00 0.00 34.23 3.08
438 440 5.320549 ACAATGGTCGTTAGTGTACCTAG 57.679 43.478 0.00 0.00 34.23 3.02
439 441 4.110482 CAATGGTCGTTAGTGTACCTAGC 58.890 47.826 0.00 0.00 34.23 3.42
440 442 2.794103 TGGTCGTTAGTGTACCTAGCA 58.206 47.619 0.00 0.00 34.23 3.49
441 443 3.156293 TGGTCGTTAGTGTACCTAGCAA 58.844 45.455 0.00 0.00 34.23 3.91
442 444 3.765511 TGGTCGTTAGTGTACCTAGCAAT 59.234 43.478 0.00 0.00 34.23 3.56
443 445 4.142315 TGGTCGTTAGTGTACCTAGCAATC 60.142 45.833 0.00 0.00 34.23 2.67
444 446 4.142315 GGTCGTTAGTGTACCTAGCAATCA 60.142 45.833 0.00 0.00 0.00 2.57
445 447 5.451520 GGTCGTTAGTGTACCTAGCAATCAT 60.452 44.000 0.00 0.00 0.00 2.45
446 448 5.686397 GTCGTTAGTGTACCTAGCAATCATC 59.314 44.000 0.00 0.00 0.00 2.92
447 449 5.358725 TCGTTAGTGTACCTAGCAATCATCA 59.641 40.000 0.00 0.00 0.00 3.07
448 450 6.040504 TCGTTAGTGTACCTAGCAATCATCAT 59.959 38.462 0.00 0.00 0.00 2.45
449 451 6.363626 CGTTAGTGTACCTAGCAATCATCATC 59.636 42.308 0.00 0.00 0.00 2.92
450 452 5.876651 AGTGTACCTAGCAATCATCATCA 57.123 39.130 0.00 0.00 0.00 3.07
451 453 6.430962 AGTGTACCTAGCAATCATCATCAT 57.569 37.500 0.00 0.00 0.00 2.45
452 454 6.835174 AGTGTACCTAGCAATCATCATCATT 58.165 36.000 0.00 0.00 0.00 2.57
453 455 7.966812 AGTGTACCTAGCAATCATCATCATTA 58.033 34.615 0.00 0.00 0.00 1.90
454 456 8.600668 AGTGTACCTAGCAATCATCATCATTAT 58.399 33.333 0.00 0.00 0.00 1.28
455 457 9.224267 GTGTACCTAGCAATCATCATCATTATT 57.776 33.333 0.00 0.00 0.00 1.40
456 458 9.797642 TGTACCTAGCAATCATCATCATTATTT 57.202 29.630 0.00 0.00 0.00 1.40
460 462 9.764870 CCTAGCAATCATCATCATTATTTAACG 57.235 33.333 0.00 0.00 0.00 3.18
461 463 9.764870 CTAGCAATCATCATCATTATTTAACGG 57.235 33.333 0.00 0.00 0.00 4.44
462 464 8.169977 AGCAATCATCATCATTATTTAACGGT 57.830 30.769 0.00 0.00 0.00 4.83
463 465 8.632679 AGCAATCATCATCATTATTTAACGGTT 58.367 29.630 0.00 0.00 0.00 4.44
464 466 9.248291 GCAATCATCATCATTATTTAACGGTTT 57.752 29.630 0.00 0.00 0.00 3.27
470 472 9.730420 ATCATCATTATTTAACGGTTTTACTGC 57.270 29.630 0.00 0.00 0.00 4.40
471 473 8.731605 TCATCATTATTTAACGGTTTTACTGCA 58.268 29.630 0.00 0.00 0.00 4.41
472 474 9.009327 CATCATTATTTAACGGTTTTACTGCAG 57.991 33.333 13.48 13.48 0.00 4.41
473 475 8.101654 TCATTATTTAACGGTTTTACTGCAGT 57.898 30.769 25.12 25.12 0.00 4.40
474 476 8.231837 TCATTATTTAACGGTTTTACTGCAGTC 58.768 33.333 25.56 8.87 0.00 3.51
475 477 7.733402 TTATTTAACGGTTTTACTGCAGTCT 57.267 32.000 25.56 1.44 0.00 3.24
476 478 5.412526 TTTAACGGTTTTACTGCAGTCTG 57.587 39.130 25.56 16.31 0.00 3.51
477 479 2.902705 ACGGTTTTACTGCAGTCTGA 57.097 45.000 25.56 8.09 0.00 3.27
478 480 2.755650 ACGGTTTTACTGCAGTCTGAG 58.244 47.619 25.56 13.38 0.00 3.35
479 481 2.102588 ACGGTTTTACTGCAGTCTGAGT 59.897 45.455 25.56 14.03 0.00 3.41
480 482 3.131396 CGGTTTTACTGCAGTCTGAGTT 58.869 45.455 25.56 0.00 0.00 3.01
481 483 3.560068 CGGTTTTACTGCAGTCTGAGTTT 59.440 43.478 25.56 0.00 0.00 2.66
482 484 4.035208 CGGTTTTACTGCAGTCTGAGTTTT 59.965 41.667 25.56 0.00 0.00 2.43
483 485 5.273944 GGTTTTACTGCAGTCTGAGTTTTG 58.726 41.667 25.56 0.00 0.00 2.44
484 486 4.552166 TTTACTGCAGTCTGAGTTTTGC 57.448 40.909 25.56 0.00 37.09 3.68
485 487 2.042686 ACTGCAGTCTGAGTTTTGCA 57.957 45.000 15.25 7.70 43.62 4.08
486 488 2.579873 ACTGCAGTCTGAGTTTTGCAT 58.420 42.857 15.25 0.00 44.61 3.96
487 489 2.954318 ACTGCAGTCTGAGTTTTGCATT 59.046 40.909 15.25 2.10 44.61 3.56
488 490 3.382546 ACTGCAGTCTGAGTTTTGCATTT 59.617 39.130 15.25 0.00 44.61 2.32
489 491 3.708890 TGCAGTCTGAGTTTTGCATTTG 58.291 40.909 3.32 0.00 41.23 2.32
490 492 3.130869 TGCAGTCTGAGTTTTGCATTTGT 59.869 39.130 3.32 0.00 41.23 2.83
491 493 3.732721 GCAGTCTGAGTTTTGCATTTGTC 59.267 43.478 3.32 0.00 36.59 3.18
492 494 3.970610 CAGTCTGAGTTTTGCATTTGTCG 59.029 43.478 0.00 0.00 0.00 4.35
493 495 3.627577 AGTCTGAGTTTTGCATTTGTCGT 59.372 39.130 0.00 0.00 0.00 4.34
494 496 4.096382 AGTCTGAGTTTTGCATTTGTCGTT 59.904 37.500 0.00 0.00 0.00 3.85
495 497 5.295787 AGTCTGAGTTTTGCATTTGTCGTTA 59.704 36.000 0.00 0.00 0.00 3.18
496 498 5.621228 GTCTGAGTTTTGCATTTGTCGTTAG 59.379 40.000 0.00 0.00 0.00 2.34
497 499 4.286910 TGAGTTTTGCATTTGTCGTTAGC 58.713 39.130 0.00 0.00 0.00 3.09
498 500 3.296628 AGTTTTGCATTTGTCGTTAGCG 58.703 40.909 0.00 0.00 39.92 4.26
499 501 1.680668 TTTGCATTTGTCGTTAGCGC 58.319 45.000 0.00 0.00 38.14 5.92
500 502 0.451957 TTGCATTTGTCGTTAGCGCG 60.452 50.000 0.00 0.00 38.14 6.86
501 503 1.131826 GCATTTGTCGTTAGCGCGT 59.868 52.632 8.43 0.00 38.14 6.01
502 504 0.452122 GCATTTGTCGTTAGCGCGTT 60.452 50.000 8.43 3.54 38.14 4.84
503 505 1.201834 GCATTTGTCGTTAGCGCGTTA 60.202 47.619 8.43 2.16 38.14 3.18
504 506 2.678705 CATTTGTCGTTAGCGCGTTAG 58.321 47.619 8.43 0.00 38.14 2.34
505 507 1.062258 TTTGTCGTTAGCGCGTTAGG 58.938 50.000 8.43 2.17 38.14 2.69
506 508 0.039256 TTGTCGTTAGCGCGTTAGGT 60.039 50.000 8.43 0.00 38.14 3.08
507 509 0.730155 TGTCGTTAGCGCGTTAGGTG 60.730 55.000 8.43 0.00 38.14 4.00
508 510 0.454957 GTCGTTAGCGCGTTAGGTGA 60.455 55.000 8.43 2.31 38.14 4.02
509 511 0.179181 TCGTTAGCGCGTTAGGTGAG 60.179 55.000 8.43 0.00 38.14 3.51
510 512 0.179181 CGTTAGCGCGTTAGGTGAGA 60.179 55.000 8.43 0.00 0.00 3.27
511 513 1.266466 GTTAGCGCGTTAGGTGAGAC 58.734 55.000 8.43 0.00 0.00 3.36
512 514 1.135460 GTTAGCGCGTTAGGTGAGACT 60.135 52.381 8.43 0.00 0.00 3.24
513 515 2.028420 TAGCGCGTTAGGTGAGACTA 57.972 50.000 8.43 0.00 0.00 2.59
514 516 1.171308 AGCGCGTTAGGTGAGACTAA 58.829 50.000 8.43 0.00 0.00 2.24
515 517 1.542915 AGCGCGTTAGGTGAGACTAAA 59.457 47.619 8.43 0.00 34.94 1.85
516 518 2.029649 AGCGCGTTAGGTGAGACTAAAA 60.030 45.455 8.43 0.00 34.94 1.52
517 519 2.733026 GCGCGTTAGGTGAGACTAAAAA 59.267 45.455 8.43 0.00 34.94 1.94
518 520 3.422732 GCGCGTTAGGTGAGACTAAAAAC 60.423 47.826 8.43 0.00 34.94 2.43
519 521 3.737266 CGCGTTAGGTGAGACTAAAAACA 59.263 43.478 0.00 0.00 34.94 2.83
520 522 4.387862 CGCGTTAGGTGAGACTAAAAACAT 59.612 41.667 0.00 0.00 34.94 2.71
521 523 5.618561 GCGTTAGGTGAGACTAAAAACATG 58.381 41.667 0.00 0.00 34.94 3.21
522 524 5.407387 GCGTTAGGTGAGACTAAAAACATGA 59.593 40.000 0.00 0.00 34.94 3.07
523 525 6.092259 GCGTTAGGTGAGACTAAAAACATGAT 59.908 38.462 0.00 0.00 34.94 2.45
524 526 7.277098 GCGTTAGGTGAGACTAAAAACATGATA 59.723 37.037 0.00 0.00 34.94 2.15
525 527 9.146984 CGTTAGGTGAGACTAAAAACATGATAA 57.853 33.333 0.00 0.00 34.94 1.75
529 531 9.574516 AGGTGAGACTAAAAACATGATAAAACT 57.425 29.630 0.00 0.00 0.00 2.66
539 541 8.863872 AAAACATGATAAAACTACAGTAGCCT 57.136 30.769 7.57 0.00 0.00 4.58
540 542 9.953565 AAAACATGATAAAACTACAGTAGCCTA 57.046 29.630 7.57 0.00 0.00 3.93
541 543 8.943909 AACATGATAAAACTACAGTAGCCTAC 57.056 34.615 7.57 0.00 0.00 3.18
542 544 8.074613 ACATGATAAAACTACAGTAGCCTACA 57.925 34.615 7.57 2.09 0.00 2.74
543 545 8.198109 ACATGATAAAACTACAGTAGCCTACAG 58.802 37.037 7.57 0.00 0.00 2.74
544 546 7.949690 TGATAAAACTACAGTAGCCTACAGA 57.050 36.000 7.57 0.00 0.00 3.41
545 547 8.357290 TGATAAAACTACAGTAGCCTACAGAA 57.643 34.615 7.57 0.00 0.00 3.02
577 579 1.468520 CCCCACACAAATAAGCGACAG 59.531 52.381 0.00 0.00 0.00 3.51
578 580 2.422597 CCCACACAAATAAGCGACAGA 58.577 47.619 0.00 0.00 0.00 3.41
607 609 3.391506 GCTCAGCCAACCATTTTTCTT 57.608 42.857 0.00 0.00 0.00 2.52
608 610 3.732212 GCTCAGCCAACCATTTTTCTTT 58.268 40.909 0.00 0.00 0.00 2.52
610 612 4.502087 GCTCAGCCAACCATTTTTCTTTCT 60.502 41.667 0.00 0.00 0.00 2.52
611 613 5.200368 TCAGCCAACCATTTTTCTTTCTC 57.800 39.130 0.00 0.00 0.00 2.87
612 614 3.983344 CAGCCAACCATTTTTCTTTCTCG 59.017 43.478 0.00 0.00 0.00 4.04
613 615 2.731451 GCCAACCATTTTTCTTTCTCGC 59.269 45.455 0.00 0.00 0.00 5.03
616 618 3.643159 ACCATTTTTCTTTCTCGCCAC 57.357 42.857 0.00 0.00 0.00 5.01
617 619 3.222603 ACCATTTTTCTTTCTCGCCACT 58.777 40.909 0.00 0.00 0.00 4.00
619 621 4.825085 ACCATTTTTCTTTCTCGCCACTTA 59.175 37.500 0.00 0.00 0.00 2.24
620 622 5.300792 ACCATTTTTCTTTCTCGCCACTTAA 59.699 36.000 0.00 0.00 0.00 1.85
621 623 6.183360 ACCATTTTTCTTTCTCGCCACTTAAA 60.183 34.615 0.00 0.00 0.00 1.52
622 624 6.699642 CCATTTTTCTTTCTCGCCACTTAAAA 59.300 34.615 0.00 0.00 0.00 1.52
623 625 7.223777 CCATTTTTCTTTCTCGCCACTTAAAAA 59.776 33.333 0.00 0.00 0.00 1.94
664 666 6.771188 ACACTTAGAATTCTCAAACAGACG 57.229 37.500 12.24 0.00 0.00 4.18
667 669 3.126001 AGAATTCTCAAACAGACGCCA 57.874 42.857 0.88 0.00 0.00 5.69
668 670 2.808543 AGAATTCTCAAACAGACGCCAC 59.191 45.455 0.88 0.00 0.00 5.01
669 671 2.254546 ATTCTCAAACAGACGCCACA 57.745 45.000 0.00 0.00 0.00 4.17
670 672 1.295792 TTCTCAAACAGACGCCACAC 58.704 50.000 0.00 0.00 0.00 3.82
671 673 0.464036 TCTCAAACAGACGCCACACT 59.536 50.000 0.00 0.00 0.00 3.55
672 674 1.134521 TCTCAAACAGACGCCACACTT 60.135 47.619 0.00 0.00 0.00 3.16
675 677 1.400142 CAAACAGACGCCACACTTTGA 59.600 47.619 0.00 0.00 0.00 2.69
676 678 1.967319 AACAGACGCCACACTTTGAT 58.033 45.000 0.00 0.00 0.00 2.57
677 679 1.512926 ACAGACGCCACACTTTGATC 58.487 50.000 0.00 0.00 0.00 2.92
678 680 1.070758 ACAGACGCCACACTTTGATCT 59.929 47.619 0.00 0.00 0.00 2.75
679 681 2.146342 CAGACGCCACACTTTGATCTT 58.854 47.619 0.00 0.00 0.00 2.40
680 682 2.549754 CAGACGCCACACTTTGATCTTT 59.450 45.455 0.00 0.00 0.00 2.52
681 683 2.808543 AGACGCCACACTTTGATCTTTC 59.191 45.455 0.00 0.00 0.00 2.62
682 684 2.548057 GACGCCACACTTTGATCTTTCA 59.452 45.455 0.00 0.00 0.00 2.69
683 685 3.149196 ACGCCACACTTTGATCTTTCAT 58.851 40.909 0.00 0.00 0.00 2.57
710 712 2.977405 CGAAAGGGCAACAGAAGAAG 57.023 50.000 0.00 0.00 39.74 2.85
711 713 1.537202 CGAAAGGGCAACAGAAGAAGG 59.463 52.381 0.00 0.00 39.74 3.46
712 714 2.810400 CGAAAGGGCAACAGAAGAAGGA 60.810 50.000 0.00 0.00 39.74 3.36
714 716 0.695347 AGGGCAACAGAAGAAGGAGG 59.305 55.000 0.00 0.00 39.74 4.30
715 717 0.962855 GGGCAACAGAAGAAGGAGGC 60.963 60.000 0.00 0.00 39.74 4.70
716 718 0.250901 GGCAACAGAAGAAGGAGGCA 60.251 55.000 0.00 0.00 0.00 4.75
717 719 1.609208 GCAACAGAAGAAGGAGGCAA 58.391 50.000 0.00 0.00 0.00 4.52
726 728 0.322906 GAAGGAGGCAAAGGTCCAGG 60.323 60.000 0.00 0.00 35.02 4.45
728 730 0.178873 AGGAGGCAAAGGTCCAGGTA 60.179 55.000 0.00 0.00 35.02 3.08
729 731 0.919710 GGAGGCAAAGGTCCAGGTAT 59.080 55.000 0.00 0.00 32.55 2.73
736 738 4.273318 GCAAAGGTCCAGGTATTCAGATT 58.727 43.478 0.00 0.00 0.00 2.40
741 743 4.103311 AGGTCCAGGTATTCAGATTAAGGC 59.897 45.833 0.00 0.00 0.00 4.35
742 744 4.390264 GTCCAGGTATTCAGATTAAGGCC 58.610 47.826 0.00 0.00 0.00 5.19
743 745 3.394606 TCCAGGTATTCAGATTAAGGCCC 59.605 47.826 0.00 0.00 0.00 5.80
744 746 3.138283 CCAGGTATTCAGATTAAGGCCCA 59.862 47.826 0.00 0.00 0.00 5.36
745 747 4.386312 CCAGGTATTCAGATTAAGGCCCAA 60.386 45.833 0.00 0.00 0.00 4.12
747 749 4.229582 AGGTATTCAGATTAAGGCCCAACA 59.770 41.667 0.00 0.00 0.00 3.33
748 750 4.953579 GGTATTCAGATTAAGGCCCAACAA 59.046 41.667 0.00 0.00 0.00 2.83
749 751 5.163550 GGTATTCAGATTAAGGCCCAACAAC 60.164 44.000 0.00 0.00 0.00 3.32
752 754 0.885196 GATTAAGGCCCAACAACGCA 59.115 50.000 0.00 0.00 0.00 5.24
754 756 0.466555 TTAAGGCCCAACAACGCACT 60.467 50.000 0.00 0.00 0.00 4.40
755 757 1.169661 TAAGGCCCAACAACGCACTG 61.170 55.000 0.00 0.00 0.00 3.66
756 758 4.645921 GGCCCAACAACGCACTGC 62.646 66.667 0.00 0.00 0.00 4.40
757 759 4.645921 GCCCAACAACGCACTGCC 62.646 66.667 0.00 0.00 0.00 4.85
758 760 4.326766 CCCAACAACGCACTGCCG 62.327 66.667 0.00 0.00 0.00 5.69
759 761 3.276091 CCAACAACGCACTGCCGA 61.276 61.111 0.00 0.00 0.00 5.54
760 762 2.712539 CAACAACGCACTGCCGAA 59.287 55.556 0.00 0.00 0.00 4.30
761 763 1.282570 CAACAACGCACTGCCGAAT 59.717 52.632 0.00 0.00 0.00 3.34
762 764 0.998226 CAACAACGCACTGCCGAATG 60.998 55.000 0.00 0.16 0.00 2.67
763 765 2.128853 AACAACGCACTGCCGAATGG 62.129 55.000 0.00 0.00 38.77 3.16
764 766 3.055719 AACGCACTGCCGAATGGG 61.056 61.111 0.00 0.00 39.58 4.00
781 783 3.727738 GGCCTACCCATAGCTTTCC 57.272 57.895 0.00 0.00 0.00 3.13
782 784 0.843984 GGCCTACCCATAGCTTTCCA 59.156 55.000 0.00 0.00 0.00 3.53
783 785 1.202818 GGCCTACCCATAGCTTTCCAG 60.203 57.143 0.00 0.00 0.00 3.86
784 786 1.490910 GCCTACCCATAGCTTTCCAGT 59.509 52.381 0.00 0.00 0.00 4.00
785 787 2.485657 GCCTACCCATAGCTTTCCAGTC 60.486 54.545 0.00 0.00 0.00 3.51
787 789 1.668826 ACCCATAGCTTTCCAGTCCA 58.331 50.000 0.00 0.00 0.00 4.02
788 790 1.992557 ACCCATAGCTTTCCAGTCCAA 59.007 47.619 0.00 0.00 0.00 3.53
789 791 2.582636 ACCCATAGCTTTCCAGTCCAAT 59.417 45.455 0.00 0.00 0.00 3.16
790 792 2.954318 CCCATAGCTTTCCAGTCCAATG 59.046 50.000 0.00 0.00 0.00 2.82
791 793 2.954318 CCATAGCTTTCCAGTCCAATGG 59.046 50.000 0.00 0.00 42.11 3.16
800 802 4.404098 GTCCAATGGACCCCGCGT 62.404 66.667 21.30 0.00 46.19 6.01
801 803 4.090588 TCCAATGGACCCCGCGTC 62.091 66.667 4.92 0.00 41.15 5.19
803 805 4.752879 CAATGGACCCCGCGTCGT 62.753 66.667 4.92 0.00 42.99 4.34
804 806 4.752879 AATGGACCCCGCGTCGTG 62.753 66.667 4.92 0.00 42.99 4.35
815 817 4.487412 CGTCGTGGGCCGTAGTCC 62.487 72.222 0.00 0.00 37.94 3.85
822 824 4.139234 GGCCGTAGTCCCGACCAC 62.139 72.222 0.00 0.00 29.93 4.16
823 825 3.066814 GCCGTAGTCCCGACCACT 61.067 66.667 0.00 0.00 0.00 4.00
824 826 2.643232 GCCGTAGTCCCGACCACTT 61.643 63.158 0.00 0.00 0.00 3.16
825 827 1.969862 CCGTAGTCCCGACCACTTT 59.030 57.895 0.00 0.00 0.00 2.66
826 828 0.319405 CCGTAGTCCCGACCACTTTT 59.681 55.000 0.00 0.00 0.00 2.27
827 829 1.670967 CCGTAGTCCCGACCACTTTTC 60.671 57.143 0.00 0.00 0.00 2.29
828 830 1.271656 CGTAGTCCCGACCACTTTTCT 59.728 52.381 0.00 0.00 0.00 2.52
829 831 2.670509 CGTAGTCCCGACCACTTTTCTC 60.671 54.545 0.00 0.00 0.00 2.87
830 832 0.317479 AGTCCCGACCACTTTTCTCG 59.683 55.000 0.00 0.00 0.00 4.04
831 833 1.005394 TCCCGACCACTTTTCTCGC 60.005 57.895 0.00 0.00 0.00 5.03
832 834 2.380410 CCCGACCACTTTTCTCGCG 61.380 63.158 0.00 0.00 0.00 5.87
833 835 2.470286 CGACCACTTTTCTCGCGC 59.530 61.111 0.00 0.00 0.00 6.86
884 886 3.223589 GCGAGCTCCCCTCCTCTC 61.224 72.222 8.47 0.00 37.27 3.20
885 887 2.600731 CGAGCTCCCCTCCTCTCT 59.399 66.667 8.47 0.00 37.27 3.10
886 888 1.528309 CGAGCTCCCCTCCTCTCTC 60.528 68.421 8.47 0.00 37.27 3.20
900 902 1.782752 CTCTCTCTCCTCCTCCCATCT 59.217 57.143 0.00 0.00 0.00 2.90
902 904 0.856982 TCTCTCCTCCTCCCATCTCC 59.143 60.000 0.00 0.00 0.00 3.71
1110 1132 4.403137 TACAACGTCGTCCCGCGG 62.403 66.667 21.04 21.04 41.72 6.46
1365 1396 3.779303 CACGTACGTGCATGCATAC 57.221 52.632 32.93 20.94 39.39 2.39
1366 1397 0.300491 CACGTACGTGCATGCATACC 59.700 55.000 32.93 10.37 39.39 2.73
1367 1398 0.808453 ACGTACGTGCATGCATACCC 60.808 55.000 25.64 9.96 0.00 3.69
1368 1399 0.529773 CGTACGTGCATGCATACCCT 60.530 55.000 25.64 7.18 0.00 4.34
1369 1400 1.217882 GTACGTGCATGCATACCCTC 58.782 55.000 25.64 8.75 0.00 4.30
1370 1401 0.105964 TACGTGCATGCATACCCTCC 59.894 55.000 25.64 7.95 0.00 4.30
1371 1402 1.893808 CGTGCATGCATACCCTCCC 60.894 63.158 25.64 7.15 0.00 4.30
1372 1403 1.533711 GTGCATGCATACCCTCCCT 59.466 57.895 25.64 0.00 0.00 4.20
1373 1404 0.536006 GTGCATGCATACCCTCCCTC 60.536 60.000 25.64 2.41 0.00 4.30
1382 1413 3.321950 CATACCCTCCCTCTCCATTCTT 58.678 50.000 0.00 0.00 0.00 2.52
1396 1427 6.706295 TCTCCATTCTTCTTCTTCTTCTTCC 58.294 40.000 0.00 0.00 0.00 3.46
1405 1436 4.218852 TCTTCTTCTTCTTCCTCTCCGTTC 59.781 45.833 0.00 0.00 0.00 3.95
1421 1456 0.459759 GTTCTTCCCGTGGGATCGAC 60.460 60.000 8.81 4.09 44.74 4.20
1443 1478 0.522180 ATCTCGTCTCGTGTGGTGAC 59.478 55.000 0.00 0.00 36.13 3.67
1592 1634 6.317140 CACATTCTTACATTCTGCATGGTAGT 59.683 38.462 0.00 0.00 37.17 2.73
1593 1635 7.495606 CACATTCTTACATTCTGCATGGTAGTA 59.504 37.037 0.00 0.00 37.17 1.82
1594 1636 7.712639 ACATTCTTACATTCTGCATGGTAGTAG 59.287 37.037 0.00 0.00 37.17 2.57
1624 1666 6.744112 TGAACCATTGTCATTTCCTTGTAAC 58.256 36.000 0.00 0.00 0.00 2.50
1642 1684 7.426456 CCTTGTAACTCATTTTCAATTCGATCG 59.574 37.037 9.36 9.36 0.00 3.69
1668 1712 1.134401 TGCCGCCTTTCAAGATCTAGG 60.134 52.381 5.05 5.05 0.00 3.02
2065 2138 6.638063 CAGAAAGAAGCGAAATGAATGTTTCA 59.362 34.615 0.00 0.00 45.01 2.69
2066 2139 6.638468 AGAAAGAAGCGAAATGAATGTTTCAC 59.362 34.615 0.00 0.00 43.48 3.18
2067 2140 5.695851 AGAAGCGAAATGAATGTTTCACT 57.304 34.783 0.00 0.00 43.48 3.41
2068 2141 6.076981 AGAAGCGAAATGAATGTTTCACTT 57.923 33.333 3.20 3.20 43.48 3.16
2069 2142 6.145535 AGAAGCGAAATGAATGTTTCACTTC 58.854 36.000 16.40 16.40 46.95 3.01
2082 2155 8.523915 AATGTTTCACTTCAGGATATATGCAA 57.476 30.769 7.02 0.00 0.00 4.08
2110 2184 5.978919 TGCTAACTCAAATGCAAACAGAAAG 59.021 36.000 0.00 0.00 32.12 2.62
2118 2192 5.678132 AATGCAAACAGAAAGGAAATTGC 57.322 34.783 0.00 0.00 42.49 3.56
2158 2232 5.989477 TGGGAGGAAACTGTTATACTGATG 58.011 41.667 0.00 0.00 44.43 3.07
2159 2233 5.724370 TGGGAGGAAACTGTTATACTGATGA 59.276 40.000 0.00 0.00 44.43 2.92
2160 2234 6.386927 TGGGAGGAAACTGTTATACTGATGAT 59.613 38.462 0.00 0.00 44.43 2.45
2161 2235 7.092444 TGGGAGGAAACTGTTATACTGATGATT 60.092 37.037 0.00 0.00 44.43 2.57
2162 2236 7.775561 GGGAGGAAACTGTTATACTGATGATTT 59.224 37.037 0.00 0.00 44.43 2.17
2163 2237 8.831550 GGAGGAAACTGTTATACTGATGATTTC 58.168 37.037 0.00 0.00 44.43 2.17
2169 2243 9.814899 AACTGTTATACTGATGATTTCTCTCTG 57.185 33.333 0.00 0.00 0.00 3.35
2174 2248 9.591792 TTATACTGATGATTTCTCTCTGTGTTG 57.408 33.333 0.00 0.00 0.00 3.33
2286 2360 2.747446 TGCCCTCGCAACTTCTAAAATC 59.253 45.455 0.00 0.00 43.74 2.17
2293 2367 3.670627 CGCAACTTCTAAAATCCCACAGC 60.671 47.826 0.00 0.00 0.00 4.40
2295 2369 4.261994 GCAACTTCTAAAATCCCACAGCAA 60.262 41.667 0.00 0.00 0.00 3.91
2296 2370 5.464168 CAACTTCTAAAATCCCACAGCAAG 58.536 41.667 0.00 0.00 0.00 4.01
2301 2375 6.061022 TCTAAAATCCCACAGCAAGTATGA 57.939 37.500 0.00 0.00 0.00 2.15
2302 2376 6.662755 TCTAAAATCCCACAGCAAGTATGAT 58.337 36.000 0.00 0.00 0.00 2.45
2304 2378 6.949352 AAAATCCCACAGCAAGTATGATAG 57.051 37.500 0.00 0.00 0.00 2.08
2307 2381 5.435686 TCCCACAGCAAGTATGATAGTTT 57.564 39.130 0.00 0.00 0.00 2.66
2308 2382 5.428253 TCCCACAGCAAGTATGATAGTTTC 58.572 41.667 0.00 0.00 0.00 2.78
2309 2383 5.045942 TCCCACAGCAAGTATGATAGTTTCA 60.046 40.000 0.00 0.00 39.12 2.69
2318 2392 9.823098 GCAAGTATGATAGTTTCATCATCATTC 57.177 33.333 0.00 0.00 44.13 2.67
2586 2660 6.329197 ACCAGTAGTATATTTAGTGGGCATGT 59.671 38.462 18.23 2.77 43.12 3.21
2596 2670 2.361104 GGGCATGTTCTTCCCGCA 60.361 61.111 0.00 0.00 0.00 5.69
2602 2676 0.537188 ATGTTCTTCCCGCAGTCGAT 59.463 50.000 0.00 0.00 38.10 3.59
2603 2677 0.320374 TGTTCTTCCCGCAGTCGATT 59.680 50.000 0.00 0.00 38.10 3.34
2604 2678 0.721718 GTTCTTCCCGCAGTCGATTG 59.278 55.000 3.12 3.12 38.10 2.67
2605 2679 1.019278 TTCTTCCCGCAGTCGATTGC 61.019 55.000 21.79 21.79 40.67 3.56
2637 2711 5.163814 GGTGTTTATCTGTTCAGATGCTGAC 60.164 44.000 21.15 14.72 40.46 3.51
2640 2714 2.756840 TCTGTTCAGATGCTGACAGG 57.243 50.000 18.15 5.75 40.46 4.00
2652 2726 1.679311 TGACAGGATCAGGTGTGCC 59.321 57.895 0.00 0.00 31.91 5.01
2703 2777 2.143122 CTTCGCAAACCAGTAAGCTCA 58.857 47.619 0.00 0.00 0.00 4.26
2748 2822 0.603975 GAATCCATACCCTCCGCAGC 60.604 60.000 0.00 0.00 0.00 5.25
2759 2833 0.177604 CTCCGCAGCCTTCTTGATCT 59.822 55.000 0.00 0.00 0.00 2.75
2859 2968 6.042777 TGTTAATCAGGACATCACGATCTTC 58.957 40.000 0.00 0.00 0.00 2.87
2893 3002 2.352388 TGGTAATGCCACTAAGCGAAC 58.648 47.619 0.00 0.00 43.61 3.95
3022 3151 7.440856 GTCCTTCTGATCATCTACAATTTCTCC 59.559 40.741 0.00 0.00 0.00 3.71
3079 3208 2.625973 AATCTCGAGAGGCTGCTGCG 62.626 60.000 21.52 0.00 40.82 5.18
3270 3402 1.006639 GGATGGGGCTGGTAAAAAGGA 59.993 52.381 0.00 0.00 0.00 3.36
3298 3430 0.033228 CCGACATGATGAGCTCCCTC 59.967 60.000 12.15 8.82 38.62 4.30
3490 3628 2.036958 TGAGTTTGTCTGGTGTGGTG 57.963 50.000 0.00 0.00 0.00 4.17
3532 3670 0.179084 TCGGTTCGAGAATGCCCATC 60.179 55.000 0.00 0.00 0.00 3.51
3541 3679 3.757248 AATGCCCATCGAGGTCGCC 62.757 63.158 0.00 0.00 39.60 5.54
3599 3737 2.530701 AGAAGATCTTGAGGTCCGTGT 58.469 47.619 14.00 0.00 0.00 4.49
3736 3874 4.009675 TGGTGCTCATCAATGGTAAAGTC 58.990 43.478 0.00 0.00 0.00 3.01
3745 3883 2.936498 CAATGGTAAAGTCGAGCCGATT 59.064 45.455 0.67 0.00 38.42 3.34
3871 4010 2.436173 GCCCAAGTAGAGTTAGCCATCT 59.564 50.000 0.00 0.00 0.00 2.90
4153 4297 0.763652 ATAGTGCATCCTCCCTGCTG 59.236 55.000 0.00 0.00 40.34 4.41
4242 4386 4.479158 AGGTTTGCTTCCAACCTCAAATA 58.521 39.130 0.00 0.00 31.27 1.40
4272 4419 3.769739 ATATGTTTGCCTCATCGCCTA 57.230 42.857 0.00 0.00 0.00 3.93
4275 4422 0.727398 GTTTGCCTCATCGCCTACAC 59.273 55.000 0.00 0.00 0.00 2.90
4463 4615 1.772836 ACCCACCCGACTACTACATC 58.227 55.000 0.00 0.00 0.00 3.06
4539 4691 1.597302 CTGCCGCTCAGATGGATGG 60.597 63.158 0.00 0.00 45.72 3.51
4620 4772 0.324738 ATCTTCGTCCAGAGGAGGCA 60.325 55.000 1.03 0.00 38.41 4.75
4733 4885 5.978322 GGATGAGTTCGACTATAACAAGTCC 59.022 44.000 0.00 0.00 42.46 3.85
4748 4900 3.515901 ACAAGTCCACCTTAGATCTGTCC 59.484 47.826 5.18 0.00 0.00 4.02
4843 4995 5.722172 ATTGAAGATCTCATTTCCTGGGA 57.278 39.130 0.00 0.00 39.19 4.37
4855 5007 3.350219 TTCCTGGGAAATTCTTCTCCG 57.650 47.619 0.00 0.00 30.07 4.63
4857 5009 1.408822 CCTGGGAAATTCTTCTCCGGG 60.409 57.143 0.00 0.50 39.80 5.73
5060 5370 0.177836 GCCTGCCTTCTCTTCCTCTC 59.822 60.000 0.00 0.00 0.00 3.20
5121 5431 0.610232 AGGTTCACTCATGCCAAGCC 60.610 55.000 0.00 0.00 0.00 4.35
5687 6103 1.956170 GTGCGTATGCCTCCCATCG 60.956 63.158 4.05 0.00 41.78 3.84
5756 6172 0.250124 AACACCCGATTGCTCGTTCA 60.250 50.000 0.00 0.00 43.49 3.18
6033 6458 4.346127 AGCATGCATGAGGTGTAGATAAGA 59.654 41.667 30.64 0.00 0.00 2.10
6034 6459 5.059161 GCATGCATGAGGTGTAGATAAGAA 58.941 41.667 30.64 0.00 0.00 2.52
6035 6460 5.049818 GCATGCATGAGGTGTAGATAAGAAC 60.050 44.000 30.64 2.07 0.00 3.01
6139 6567 8.691661 AATTTTTATGTAGAGGCGTTATCCAT 57.308 30.769 0.00 0.00 0.00 3.41
6279 6710 6.183360 GGTCAGGATTTGTAGCTCTATTCAGA 60.183 42.308 0.00 0.00 0.00 3.27
6300 6734 7.500992 TCAGAGGTAACCATTCATCATACTTC 58.499 38.462 0.00 0.00 37.17 3.01
6305 6739 6.038271 GGTAACCATTCATCATACTTCCACAC 59.962 42.308 0.00 0.00 0.00 3.82
6307 6741 4.943705 ACCATTCATCATACTTCCACACAC 59.056 41.667 0.00 0.00 0.00 3.82
6365 6800 6.259608 GGTTCAGAAGGTCACATCTCAATATG 59.740 42.308 0.00 0.00 0.00 1.78
6379 6814 7.984050 ACATCTCAATATGTTTGTTCTCTCGAT 59.016 33.333 0.00 0.00 36.71 3.59
6510 6955 1.470098 CCCTTGAGAAGCCATGAAACG 59.530 52.381 0.00 0.00 0.00 3.60
6554 7002 2.806244 CGGTAAGGAGGTGACAGTTTTG 59.194 50.000 0.00 0.00 0.00 2.44
6584 7032 0.329261 TGGACCAGAAGGCCAAGATG 59.671 55.000 5.01 0.00 37.89 2.90
6611 7059 4.702131 CAGCAGTAAGGCCTAATTTTCACT 59.298 41.667 5.16 0.00 0.00 3.41
6624 7072 7.148222 GCCTAATTTTCACTAGAAGGTTCCTTC 60.148 40.741 20.23 20.23 41.82 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.394971 TCAAACATAGACTCACAAATTGATGT 57.605 30.769 0.00 0.00 32.17 3.06
68 70 7.658179 TCAAAGACATCAAACATAGACTCAC 57.342 36.000 0.00 0.00 0.00 3.51
69 71 7.173218 GGTTCAAAGACATCAAACATAGACTCA 59.827 37.037 0.00 0.00 0.00 3.41
80 82 3.960102 AGCCAAAGGTTCAAAGACATCAA 59.040 39.130 0.00 0.00 0.00 2.57
86 88 6.945435 TGATATTGTAGCCAAAGGTTCAAAGA 59.055 34.615 0.00 0.00 34.95 2.52
87 89 7.156876 TGATATTGTAGCCAAAGGTTCAAAG 57.843 36.000 0.00 0.00 34.95 2.77
92 94 7.560991 TCATGAATGATATTGTAGCCAAAGGTT 59.439 33.333 0.00 0.00 33.44 3.50
96 98 6.016024 GGCTCATGAATGATATTGTAGCCAAA 60.016 38.462 8.77 0.00 37.80 3.28
102 104 9.752961 CAAAAATGGCTCATGAATGATATTGTA 57.247 29.630 0.00 0.00 36.02 2.41
111 113 6.105397 ACACTTCAAAAATGGCTCATGAAT 57.895 33.333 0.00 0.00 30.39 2.57
121 123 5.275234 CGACGTTCACAACACTTCAAAAATG 60.275 40.000 0.00 0.00 0.00 2.32
137 139 4.308458 CAGCCCCCACGACGTTCA 62.308 66.667 0.00 0.00 0.00 3.18
169 171 2.125832 TACAAGCTACCGCCGCAC 60.126 61.111 0.00 0.00 36.60 5.34
188 190 1.064505 CTGCATGCTACCACCAAATCG 59.935 52.381 20.33 0.00 0.00 3.34
206 208 3.449018 AGTATCCCAGTCACTACAAGCTG 59.551 47.826 0.00 0.00 0.00 4.24
230 232 7.172868 ACAACATTTTGCATTCTGATGGATA 57.827 32.000 0.00 0.00 36.00 2.59
231 233 6.045072 ACAACATTTTGCATTCTGATGGAT 57.955 33.333 0.00 0.00 36.00 3.41
314 316 9.598517 ACAACATTTTGTATTCTGTTCAATGTT 57.401 25.926 0.00 0.00 44.53 2.71
315 317 9.598517 AACAACATTTTGTATTCTGTTCAATGT 57.401 25.926 0.00 0.00 45.69 2.71
316 318 9.852481 CAACAACATTTTGTATTCTGTTCAATG 57.148 29.630 0.00 0.00 45.69 2.82
317 319 9.598517 ACAACAACATTTTGTATTCTGTTCAAT 57.401 25.926 0.00 0.00 45.69 2.57
318 320 8.994429 ACAACAACATTTTGTATTCTGTTCAA 57.006 26.923 0.00 0.00 45.69 2.69
319 321 8.867935 CAACAACAACATTTTGTATTCTGTTCA 58.132 29.630 8.76 0.00 45.69 3.18
320 322 8.868916 ACAACAACAACATTTTGTATTCTGTTC 58.131 29.630 8.76 0.00 45.69 3.18
321 323 8.770438 ACAACAACAACATTTTGTATTCTGTT 57.230 26.923 6.68 6.68 45.69 3.16
322 324 9.296400 GTACAACAACAACATTTTGTATTCTGT 57.704 29.630 0.00 3.05 45.69 3.41
323 325 9.295214 TGTACAACAACAACATTTTGTATTCTG 57.705 29.630 0.00 0.00 45.69 3.02
328 330 9.509855 GAGAATGTACAACAACAACATTTTGTA 57.490 29.630 0.00 0.00 45.69 2.41
330 332 7.706179 AGGAGAATGTACAACAACAACATTTTG 59.294 33.333 0.00 0.00 42.35 2.44
331 333 7.781056 AGGAGAATGTACAACAACAACATTTT 58.219 30.769 0.00 0.00 42.35 1.82
332 334 7.346751 AGGAGAATGTACAACAACAACATTT 57.653 32.000 0.00 0.00 42.35 2.32
333 335 6.016276 GGAGGAGAATGTACAACAACAACATT 60.016 38.462 0.00 0.00 44.35 2.71
334 336 5.473504 GGAGGAGAATGTACAACAACAACAT 59.526 40.000 0.00 0.00 35.40 2.71
335 337 4.819630 GGAGGAGAATGTACAACAACAACA 59.180 41.667 0.00 0.00 32.02 3.33
336 338 4.819630 TGGAGGAGAATGTACAACAACAAC 59.180 41.667 0.00 0.00 32.02 3.32
337 339 5.042463 TGGAGGAGAATGTACAACAACAA 57.958 39.130 0.00 0.00 32.02 2.83
338 340 4.504864 CCTGGAGGAGAATGTACAACAACA 60.505 45.833 0.00 0.00 37.39 3.33
339 341 4.003648 CCTGGAGGAGAATGTACAACAAC 58.996 47.826 0.00 0.00 37.39 3.32
340 342 3.650942 ACCTGGAGGAGAATGTACAACAA 59.349 43.478 0.00 0.00 38.94 2.83
341 343 3.248024 ACCTGGAGGAGAATGTACAACA 58.752 45.455 0.00 0.00 38.94 3.33
342 344 3.983044 ACCTGGAGGAGAATGTACAAC 57.017 47.619 0.00 0.00 38.94 3.32
343 345 3.056107 CGAACCTGGAGGAGAATGTACAA 60.056 47.826 0.00 0.00 38.94 2.41
344 346 2.496070 CGAACCTGGAGGAGAATGTACA 59.504 50.000 0.00 0.00 38.94 2.90
345 347 2.758979 TCGAACCTGGAGGAGAATGTAC 59.241 50.000 0.00 0.00 38.94 2.90
346 348 3.024547 CTCGAACCTGGAGGAGAATGTA 58.975 50.000 0.00 0.00 38.94 2.29
347 349 1.827969 CTCGAACCTGGAGGAGAATGT 59.172 52.381 0.00 0.00 38.94 2.71
348 350 2.593346 CTCGAACCTGGAGGAGAATG 57.407 55.000 0.00 0.00 38.94 2.67
355 357 2.101582 CAGGATAACCTCGAACCTGGAG 59.898 54.545 0.00 0.00 45.94 3.86
356 358 2.108168 CAGGATAACCTCGAACCTGGA 58.892 52.381 0.00 0.00 45.94 3.86
357 359 1.473434 GCAGGATAACCTCGAACCTGG 60.473 57.143 0.00 0.00 45.94 4.45
358 360 1.473434 GGCAGGATAACCTCGAACCTG 60.473 57.143 0.00 0.00 45.94 4.00
359 361 0.831307 GGCAGGATAACCTCGAACCT 59.169 55.000 0.00 0.00 45.94 3.50
360 362 0.529992 CGGCAGGATAACCTCGAACC 60.530 60.000 0.00 0.00 45.94 3.62
361 363 1.152383 GCGGCAGGATAACCTCGAAC 61.152 60.000 4.56 0.00 45.94 3.95
362 364 1.143183 GCGGCAGGATAACCTCGAA 59.857 57.895 4.56 0.00 45.94 3.71
363 365 2.812499 GCGGCAGGATAACCTCGA 59.188 61.111 4.56 0.00 45.94 4.04
364 366 2.658593 CGCGGCAGGATAACCTCG 60.659 66.667 0.00 0.00 45.94 4.63
365 367 2.967615 GCGCGGCAGGATAACCTC 60.968 66.667 8.83 0.00 45.94 3.85
367 369 2.591715 ATGCGCGGCAGGATAACC 60.592 61.111 8.83 0.00 43.65 2.85
368 370 1.887242 TCATGCGCGGCAGGATAAC 60.887 57.895 8.83 0.00 44.36 1.89
369 371 2.503546 TCATGCGCGGCAGGATAA 59.496 55.556 8.83 0.00 44.36 1.75
372 374 4.519437 CTCTCATGCGCGGCAGGA 62.519 66.667 8.83 12.79 46.99 3.86
374 376 4.519437 TCCTCTCATGCGCGGCAG 62.519 66.667 8.83 0.00 43.65 4.85
375 377 4.819761 GTCCTCTCATGCGCGGCA 62.820 66.667 8.83 7.01 44.86 5.69
377 379 4.193334 TCGTCCTCTCATGCGCGG 62.193 66.667 8.83 0.00 0.00 6.46
378 380 2.653448 CTCGTCCTCTCATGCGCG 60.653 66.667 0.00 0.00 0.00 6.86
379 381 2.279120 CCTCGTCCTCTCATGCGC 60.279 66.667 0.00 0.00 0.00 6.09
380 382 1.098129 TCTCCTCGTCCTCTCATGCG 61.098 60.000 0.00 0.00 0.00 4.73
381 383 0.667993 CTCTCCTCGTCCTCTCATGC 59.332 60.000 0.00 0.00 0.00 4.06
382 384 2.051334 ACTCTCCTCGTCCTCTCATG 57.949 55.000 0.00 0.00 0.00 3.07
383 385 2.818751 AACTCTCCTCGTCCTCTCAT 57.181 50.000 0.00 0.00 0.00 2.90
384 386 2.588464 AAACTCTCCTCGTCCTCTCA 57.412 50.000 0.00 0.00 0.00 3.27
385 387 3.945981 AAAAACTCTCCTCGTCCTCTC 57.054 47.619 0.00 0.00 0.00 3.20
386 388 4.150359 TGTAAAAACTCTCCTCGTCCTCT 58.850 43.478 0.00 0.00 0.00 3.69
387 389 4.516365 TGTAAAAACTCTCCTCGTCCTC 57.484 45.455 0.00 0.00 0.00 3.71
388 390 5.715753 ACTATGTAAAAACTCTCCTCGTCCT 59.284 40.000 0.00 0.00 0.00 3.85
389 391 5.805994 CACTATGTAAAAACTCTCCTCGTCC 59.194 44.000 0.00 0.00 0.00 4.79
390 392 6.388278 ACACTATGTAAAAACTCTCCTCGTC 58.612 40.000 0.00 0.00 0.00 4.20
391 393 6.342338 ACACTATGTAAAAACTCTCCTCGT 57.658 37.500 0.00 0.00 0.00 4.18
392 394 7.811236 TGTAACACTATGTAAAAACTCTCCTCG 59.189 37.037 0.00 0.00 0.00 4.63
393 395 9.485206 TTGTAACACTATGTAAAAACTCTCCTC 57.515 33.333 0.00 0.00 0.00 3.71
397 399 9.569122 ACCATTGTAACACTATGTAAAAACTCT 57.431 29.630 1.23 0.00 31.02 3.24
398 400 9.821662 GACCATTGTAACACTATGTAAAAACTC 57.178 33.333 1.23 0.00 31.02 3.01
399 401 8.500773 CGACCATTGTAACACTATGTAAAAACT 58.499 33.333 1.23 0.00 31.02 2.66
400 402 8.284693 ACGACCATTGTAACACTATGTAAAAAC 58.715 33.333 0.00 0.00 31.02 2.43
401 403 8.380743 ACGACCATTGTAACACTATGTAAAAA 57.619 30.769 0.00 0.00 31.02 1.94
402 404 7.966246 ACGACCATTGTAACACTATGTAAAA 57.034 32.000 0.00 0.00 31.02 1.52
403 405 7.966246 AACGACCATTGTAACACTATGTAAA 57.034 32.000 0.00 0.00 31.02 2.01
404 406 8.306038 ACTAACGACCATTGTAACACTATGTAA 58.694 33.333 0.00 0.00 31.02 2.41
405 407 7.756272 CACTAACGACCATTGTAACACTATGTA 59.244 37.037 0.00 0.00 31.02 2.29
406 408 6.588756 CACTAACGACCATTGTAACACTATGT 59.411 38.462 0.00 0.00 31.02 2.29
407 409 6.588756 ACACTAACGACCATTGTAACACTATG 59.411 38.462 0.00 0.00 32.42 2.23
408 410 6.694447 ACACTAACGACCATTGTAACACTAT 58.306 36.000 0.00 0.00 0.00 2.12
409 411 6.088016 ACACTAACGACCATTGTAACACTA 57.912 37.500 0.00 0.00 0.00 2.74
410 412 4.952460 ACACTAACGACCATTGTAACACT 58.048 39.130 0.00 0.00 0.00 3.55
411 413 5.119125 GGTACACTAACGACCATTGTAACAC 59.881 44.000 0.00 0.00 31.81 3.32
412 414 5.010922 AGGTACACTAACGACCATTGTAACA 59.989 40.000 0.00 0.00 33.57 2.41
413 415 5.473039 AGGTACACTAACGACCATTGTAAC 58.527 41.667 0.00 0.00 35.56 2.50
414 416 5.726980 AGGTACACTAACGACCATTGTAA 57.273 39.130 0.00 0.00 35.56 2.41
415 417 5.163622 GCTAGGTACACTAACGACCATTGTA 60.164 44.000 0.00 0.00 35.56 2.41
416 418 4.381292 GCTAGGTACACTAACGACCATTGT 60.381 45.833 0.00 0.00 35.56 2.71
417 419 4.110482 GCTAGGTACACTAACGACCATTG 58.890 47.826 0.00 0.00 35.56 2.82
418 420 3.765511 TGCTAGGTACACTAACGACCATT 59.234 43.478 0.00 0.00 35.56 3.16
419 421 3.359033 TGCTAGGTACACTAACGACCAT 58.641 45.455 0.00 0.00 35.56 3.55
420 422 2.794103 TGCTAGGTACACTAACGACCA 58.206 47.619 0.00 0.00 35.56 4.02
421 423 3.855689 TTGCTAGGTACACTAACGACC 57.144 47.619 0.00 0.00 0.00 4.79
422 424 4.990257 TGATTGCTAGGTACACTAACGAC 58.010 43.478 0.00 0.00 0.00 4.34
423 425 5.358725 TGATGATTGCTAGGTACACTAACGA 59.641 40.000 0.00 0.00 0.00 3.85
424 426 5.588240 TGATGATTGCTAGGTACACTAACG 58.412 41.667 0.00 0.00 0.00 3.18
425 427 7.210174 TGATGATGATTGCTAGGTACACTAAC 58.790 38.462 0.00 0.00 0.00 2.34
426 428 7.360113 TGATGATGATTGCTAGGTACACTAA 57.640 36.000 0.00 0.00 0.00 2.24
427 429 6.976934 TGATGATGATTGCTAGGTACACTA 57.023 37.500 0.00 0.00 0.00 2.74
428 430 5.876651 TGATGATGATTGCTAGGTACACT 57.123 39.130 0.00 0.00 0.00 3.55
429 431 8.783833 ATAATGATGATGATTGCTAGGTACAC 57.216 34.615 0.00 0.00 0.00 2.90
430 432 9.797642 AAATAATGATGATGATTGCTAGGTACA 57.202 29.630 0.00 0.00 0.00 2.90
434 436 9.764870 CGTTAAATAATGATGATGATTGCTAGG 57.235 33.333 0.00 0.00 0.00 3.02
435 437 9.764870 CCGTTAAATAATGATGATGATTGCTAG 57.235 33.333 0.00 0.00 0.00 3.42
436 438 9.283768 ACCGTTAAATAATGATGATGATTGCTA 57.716 29.630 0.00 0.00 0.00 3.49
437 439 8.169977 ACCGTTAAATAATGATGATGATTGCT 57.830 30.769 0.00 0.00 0.00 3.91
438 440 8.801715 AACCGTTAAATAATGATGATGATTGC 57.198 30.769 0.00 0.00 0.00 3.56
444 446 9.730420 GCAGTAAAACCGTTAAATAATGATGAT 57.270 29.630 4.32 0.00 0.00 2.45
445 447 8.731605 TGCAGTAAAACCGTTAAATAATGATGA 58.268 29.630 0.00 0.00 0.00 2.92
446 448 8.903570 TGCAGTAAAACCGTTAAATAATGATG 57.096 30.769 0.00 0.00 0.00 3.07
447 449 8.736244 ACTGCAGTAAAACCGTTAAATAATGAT 58.264 29.630 20.16 0.00 0.00 2.45
448 450 8.101654 ACTGCAGTAAAACCGTTAAATAATGA 57.898 30.769 20.16 0.00 0.00 2.57
449 451 8.234546 AGACTGCAGTAAAACCGTTAAATAATG 58.765 33.333 21.73 0.00 0.00 1.90
450 452 8.234546 CAGACTGCAGTAAAACCGTTAAATAAT 58.765 33.333 21.73 0.00 0.00 1.28
451 453 7.441760 TCAGACTGCAGTAAAACCGTTAAATAA 59.558 33.333 21.73 0.00 0.00 1.40
452 454 6.930164 TCAGACTGCAGTAAAACCGTTAAATA 59.070 34.615 21.73 0.00 0.00 1.40
453 455 5.761234 TCAGACTGCAGTAAAACCGTTAAAT 59.239 36.000 21.73 0.00 0.00 1.40
454 456 5.117584 TCAGACTGCAGTAAAACCGTTAAA 58.882 37.500 21.73 0.00 0.00 1.52
455 457 4.695396 TCAGACTGCAGTAAAACCGTTAA 58.305 39.130 21.73 0.00 0.00 2.01
456 458 4.202182 ACTCAGACTGCAGTAAAACCGTTA 60.202 41.667 21.73 0.00 0.00 3.18
457 459 3.131396 CTCAGACTGCAGTAAAACCGTT 58.869 45.455 21.73 0.00 0.00 4.44
458 460 2.102588 ACTCAGACTGCAGTAAAACCGT 59.897 45.455 21.73 9.57 0.00 4.83
459 461 2.755650 ACTCAGACTGCAGTAAAACCG 58.244 47.619 21.73 8.92 0.00 4.44
460 462 5.273944 CAAAACTCAGACTGCAGTAAAACC 58.726 41.667 21.73 6.89 0.00 3.27
461 463 4.735338 GCAAAACTCAGACTGCAGTAAAAC 59.265 41.667 21.73 7.32 34.87 2.43
462 464 4.397730 TGCAAAACTCAGACTGCAGTAAAA 59.602 37.500 21.73 6.85 39.77 1.52
463 465 3.944650 TGCAAAACTCAGACTGCAGTAAA 59.055 39.130 21.73 7.24 39.77 2.01
464 466 3.540617 TGCAAAACTCAGACTGCAGTAA 58.459 40.909 21.73 7.63 39.77 2.24
465 467 3.192541 TGCAAAACTCAGACTGCAGTA 57.807 42.857 21.73 3.00 39.77 2.74
466 468 2.042686 TGCAAAACTCAGACTGCAGT 57.957 45.000 21.88 21.88 39.77 4.40
469 471 3.709987 ACAAATGCAAAACTCAGACTGC 58.290 40.909 0.00 0.00 35.32 4.40
470 472 3.970610 CGACAAATGCAAAACTCAGACTG 59.029 43.478 0.00 0.00 0.00 3.51
471 473 3.627577 ACGACAAATGCAAAACTCAGACT 59.372 39.130 0.00 0.00 0.00 3.24
472 474 3.952535 ACGACAAATGCAAAACTCAGAC 58.047 40.909 0.00 0.00 0.00 3.51
473 475 4.630894 AACGACAAATGCAAAACTCAGA 57.369 36.364 0.00 0.00 0.00 3.27
474 476 4.379793 GCTAACGACAAATGCAAAACTCAG 59.620 41.667 0.00 0.00 0.00 3.35
475 477 4.286910 GCTAACGACAAATGCAAAACTCA 58.713 39.130 0.00 0.00 0.00 3.41
476 478 3.357823 CGCTAACGACAAATGCAAAACTC 59.642 43.478 0.00 0.00 43.93 3.01
477 479 3.296628 CGCTAACGACAAATGCAAAACT 58.703 40.909 0.00 0.00 43.93 2.66
478 480 2.160156 GCGCTAACGACAAATGCAAAAC 60.160 45.455 0.00 0.00 43.93 2.43
479 481 2.047769 GCGCTAACGACAAATGCAAAA 58.952 42.857 0.00 0.00 43.93 2.44
480 482 1.680668 GCGCTAACGACAAATGCAAA 58.319 45.000 0.00 0.00 43.93 3.68
481 483 0.451957 CGCGCTAACGACAAATGCAA 60.452 50.000 5.56 0.00 43.93 4.08
482 484 1.131623 CGCGCTAACGACAAATGCA 59.868 52.632 5.56 0.00 43.93 3.96
483 485 0.452122 AACGCGCTAACGACAAATGC 60.452 50.000 5.73 0.00 43.93 3.56
484 486 2.534150 CCTAACGCGCTAACGACAAATG 60.534 50.000 5.73 0.00 43.93 2.32
485 487 1.657094 CCTAACGCGCTAACGACAAAT 59.343 47.619 5.73 0.00 43.93 2.32
486 488 1.062258 CCTAACGCGCTAACGACAAA 58.938 50.000 5.73 0.00 43.93 2.83
487 489 0.039256 ACCTAACGCGCTAACGACAA 60.039 50.000 5.73 0.00 43.93 3.18
488 490 0.730155 CACCTAACGCGCTAACGACA 60.730 55.000 5.73 0.00 43.93 4.35
489 491 0.454957 TCACCTAACGCGCTAACGAC 60.455 55.000 5.73 0.00 43.93 4.34
490 492 0.179181 CTCACCTAACGCGCTAACGA 60.179 55.000 5.73 0.00 43.93 3.85
491 493 0.179181 TCTCACCTAACGCGCTAACG 60.179 55.000 5.73 0.00 44.07 3.18
492 494 1.135460 AGTCTCACCTAACGCGCTAAC 60.135 52.381 5.73 0.00 0.00 2.34
493 495 1.171308 AGTCTCACCTAACGCGCTAA 58.829 50.000 5.73 0.00 0.00 3.09
494 496 2.028420 TAGTCTCACCTAACGCGCTA 57.972 50.000 5.73 0.00 0.00 4.26
495 497 1.171308 TTAGTCTCACCTAACGCGCT 58.829 50.000 5.73 0.00 0.00 5.92
496 498 1.986698 TTTAGTCTCACCTAACGCGC 58.013 50.000 5.73 0.00 0.00 6.86
497 499 3.737266 TGTTTTTAGTCTCACCTAACGCG 59.263 43.478 3.53 3.53 0.00 6.01
498 500 5.407387 TCATGTTTTTAGTCTCACCTAACGC 59.593 40.000 0.00 0.00 0.00 4.84
499 501 7.596749 ATCATGTTTTTAGTCTCACCTAACG 57.403 36.000 0.00 0.00 0.00 3.18
503 505 9.574516 AGTTTTATCATGTTTTTAGTCTCACCT 57.425 29.630 0.00 0.00 0.00 4.00
513 515 9.297037 AGGCTACTGTAGTTTTATCATGTTTTT 57.703 29.630 15.71 0.00 0.00 1.94
514 516 8.863872 AGGCTACTGTAGTTTTATCATGTTTT 57.136 30.769 15.71 0.00 0.00 2.43
515 517 9.379791 GTAGGCTACTGTAGTTTTATCATGTTT 57.620 33.333 17.35 0.00 0.00 2.83
516 518 8.537016 TGTAGGCTACTGTAGTTTTATCATGTT 58.463 33.333 24.07 0.00 0.00 2.71
517 519 8.074613 TGTAGGCTACTGTAGTTTTATCATGT 57.925 34.615 24.07 0.00 0.00 3.21
518 520 8.414003 TCTGTAGGCTACTGTAGTTTTATCATG 58.586 37.037 24.07 0.00 0.00 3.07
519 521 8.534954 TCTGTAGGCTACTGTAGTTTTATCAT 57.465 34.615 24.07 0.00 0.00 2.45
520 522 7.949690 TCTGTAGGCTACTGTAGTTTTATCA 57.050 36.000 24.07 2.74 0.00 2.15
521 523 9.819267 AATTCTGTAGGCTACTGTAGTTTTATC 57.181 33.333 24.07 0.00 0.00 1.75
522 524 9.601217 CAATTCTGTAGGCTACTGTAGTTTTAT 57.399 33.333 24.07 8.52 0.00 1.40
523 525 8.038944 CCAATTCTGTAGGCTACTGTAGTTTTA 58.961 37.037 24.07 4.74 0.00 1.52
524 526 6.879458 CCAATTCTGTAGGCTACTGTAGTTTT 59.121 38.462 24.07 7.70 0.00 2.43
525 527 6.407202 CCAATTCTGTAGGCTACTGTAGTTT 58.593 40.000 24.07 13.14 0.00 2.66
526 528 5.627040 GCCAATTCTGTAGGCTACTGTAGTT 60.627 44.000 24.07 15.92 44.92 2.24
527 529 4.141914 GCCAATTCTGTAGGCTACTGTAGT 60.142 45.833 24.07 14.40 44.92 2.73
528 530 4.372656 GCCAATTCTGTAGGCTACTGTAG 58.627 47.826 24.07 14.04 44.92 2.74
529 531 4.402056 GCCAATTCTGTAGGCTACTGTA 57.598 45.455 24.07 17.72 44.92 2.74
530 532 3.268023 GCCAATTCTGTAGGCTACTGT 57.732 47.619 24.07 7.44 44.92 3.55
537 539 4.505742 GGGGATAAGAGCCAATTCTGTAGG 60.506 50.000 0.00 0.00 0.00 3.18
538 540 4.103153 TGGGGATAAGAGCCAATTCTGTAG 59.897 45.833 0.00 0.00 0.00 2.74
539 541 4.044308 TGGGGATAAGAGCCAATTCTGTA 58.956 43.478 0.00 0.00 0.00 2.74
540 542 2.852449 TGGGGATAAGAGCCAATTCTGT 59.148 45.455 0.00 0.00 0.00 3.41
541 543 3.217626 GTGGGGATAAGAGCCAATTCTG 58.782 50.000 0.00 0.00 0.00 3.02
542 544 2.852449 TGTGGGGATAAGAGCCAATTCT 59.148 45.455 0.00 0.00 0.00 2.40
543 545 2.952310 GTGTGGGGATAAGAGCCAATTC 59.048 50.000 0.00 0.00 0.00 2.17
544 546 2.311542 TGTGTGGGGATAAGAGCCAATT 59.688 45.455 0.00 0.00 0.00 2.32
545 547 1.922447 TGTGTGGGGATAAGAGCCAAT 59.078 47.619 0.00 0.00 0.00 3.16
590 592 3.983344 CGAGAAAGAAAAATGGTTGGCTG 59.017 43.478 0.00 0.00 0.00 4.85
598 600 7.692908 TTTTAAGTGGCGAGAAAGAAAAATG 57.307 32.000 0.00 0.00 0.00 2.32
642 644 5.389935 GGCGTCTGTTTGAGAATTCTAAGTG 60.390 44.000 8.25 0.00 30.26 3.16
644 646 4.690748 TGGCGTCTGTTTGAGAATTCTAAG 59.309 41.667 8.25 2.01 30.26 2.18
645 647 4.451096 GTGGCGTCTGTTTGAGAATTCTAA 59.549 41.667 8.25 0.00 30.26 2.10
647 649 2.808543 GTGGCGTCTGTTTGAGAATTCT 59.191 45.455 7.95 7.95 30.26 2.40
661 663 2.548057 TGAAAGATCAAAGTGTGGCGTC 59.452 45.455 0.00 0.00 30.99 5.19
664 666 6.587608 CCTTTTATGAAAGATCAAAGTGTGGC 59.412 38.462 11.34 0.00 44.03 5.01
667 669 6.570378 CGGCCTTTTATGAAAGATCAAAGTGT 60.570 38.462 11.34 0.00 44.03 3.55
668 670 5.801947 CGGCCTTTTATGAAAGATCAAAGTG 59.198 40.000 11.34 0.00 44.03 3.16
669 671 5.710099 TCGGCCTTTTATGAAAGATCAAAGT 59.290 36.000 11.34 0.00 44.03 2.66
670 672 6.194796 TCGGCCTTTTATGAAAGATCAAAG 57.805 37.500 11.34 0.00 44.03 2.77
671 673 6.582677 TTCGGCCTTTTATGAAAGATCAAA 57.417 33.333 11.34 0.00 44.03 2.69
672 674 6.350110 CCTTTCGGCCTTTTATGAAAGATCAA 60.350 38.462 22.67 0.00 46.36 2.57
675 677 4.402474 CCCTTTCGGCCTTTTATGAAAGAT 59.598 41.667 22.67 0.00 46.36 2.40
676 678 3.761752 CCCTTTCGGCCTTTTATGAAAGA 59.238 43.478 22.67 0.00 46.36 2.52
677 679 4.110036 CCCTTTCGGCCTTTTATGAAAG 57.890 45.455 17.07 17.07 44.24 2.62
700 702 2.175715 ACCTTTGCCTCCTTCTTCTGTT 59.824 45.455 0.00 0.00 0.00 3.16
703 705 1.352687 GGACCTTTGCCTCCTTCTTCT 59.647 52.381 0.00 0.00 0.00 2.85
705 707 1.074566 CTGGACCTTTGCCTCCTTCTT 59.925 52.381 0.00 0.00 0.00 2.52
707 709 0.322906 CCTGGACCTTTGCCTCCTTC 60.323 60.000 0.00 0.00 0.00 3.46
708 710 1.068352 ACCTGGACCTTTGCCTCCTT 61.068 55.000 0.00 0.00 0.00 3.36
709 711 0.178873 TACCTGGACCTTTGCCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
710 712 0.919710 ATACCTGGACCTTTGCCTCC 59.080 55.000 0.00 0.00 0.00 4.30
711 713 2.026262 TGAATACCTGGACCTTTGCCTC 60.026 50.000 0.00 0.00 0.00 4.70
712 714 1.992557 TGAATACCTGGACCTTTGCCT 59.007 47.619 0.00 0.00 0.00 4.75
714 716 3.350219 TCTGAATACCTGGACCTTTGC 57.650 47.619 0.00 0.00 0.00 3.68
715 717 6.543831 CCTTAATCTGAATACCTGGACCTTTG 59.456 42.308 0.00 0.00 0.00 2.77
716 718 6.663734 CCTTAATCTGAATACCTGGACCTTT 58.336 40.000 0.00 0.00 0.00 3.11
717 719 5.398012 GCCTTAATCTGAATACCTGGACCTT 60.398 44.000 0.00 0.00 0.00 3.50
726 728 5.448632 CGTTGTTGGGCCTTAATCTGAATAC 60.449 44.000 4.53 0.00 0.00 1.89
728 730 3.443681 CGTTGTTGGGCCTTAATCTGAAT 59.556 43.478 4.53 0.00 0.00 2.57
729 731 2.817258 CGTTGTTGGGCCTTAATCTGAA 59.183 45.455 4.53 0.00 0.00 3.02
736 738 1.149627 AGTGCGTTGTTGGGCCTTA 59.850 52.632 4.53 0.00 0.00 2.69
741 743 4.326766 CGGCAGTGCGTTGTTGGG 62.327 66.667 9.45 0.00 0.00 4.12
742 744 2.128853 ATTCGGCAGTGCGTTGTTGG 62.129 55.000 9.45 0.00 0.00 3.77
743 745 0.998226 CATTCGGCAGTGCGTTGTTG 60.998 55.000 9.45 0.00 0.00 3.33
744 746 1.282570 CATTCGGCAGTGCGTTGTT 59.717 52.632 9.45 0.00 0.00 2.83
745 747 2.616330 CCATTCGGCAGTGCGTTGT 61.616 57.895 9.45 0.00 0.00 3.32
747 749 3.055719 CCCATTCGGCAGTGCGTT 61.056 61.111 9.45 0.00 0.00 4.84
763 765 0.843984 TGGAAAGCTATGGGTAGGCC 59.156 55.000 0.00 0.00 0.00 5.19
764 766 1.490910 ACTGGAAAGCTATGGGTAGGC 59.509 52.381 0.00 0.00 0.00 3.93
765 767 2.104963 GGACTGGAAAGCTATGGGTAGG 59.895 54.545 0.00 0.00 0.00 3.18
767 769 2.840511 TGGACTGGAAAGCTATGGGTA 58.159 47.619 0.00 0.00 0.00 3.69
768 770 1.668826 TGGACTGGAAAGCTATGGGT 58.331 50.000 0.00 0.00 0.00 4.51
771 773 3.889815 TCCATTGGACTGGAAAGCTATG 58.110 45.455 0.00 0.00 42.36 2.23
784 786 4.090588 GACGCGGGGTCCATTGGA 62.091 66.667 12.47 0.00 39.90 3.53
787 789 4.752879 CACGACGCGGGGTCCATT 62.753 66.667 18.10 1.74 42.99 3.16
802 804 4.139234 GTCGGGACTACGGCCCAC 62.139 72.222 5.48 0.00 46.36 4.61
806 808 2.163601 AAAGTGGTCGGGACTACGGC 62.164 60.000 9.26 0.00 45.84 5.68
807 809 0.319405 AAAAGTGGTCGGGACTACGG 59.681 55.000 9.26 0.00 45.84 4.02
808 810 1.271656 AGAAAAGTGGTCGGGACTACG 59.728 52.381 9.26 0.00 45.84 3.51
809 811 2.670509 CGAGAAAAGTGGTCGGGACTAC 60.671 54.545 7.17 7.17 42.26 2.73
810 812 1.542915 CGAGAAAAGTGGTCGGGACTA 59.457 52.381 0.00 0.00 0.00 2.59
811 813 0.317479 CGAGAAAAGTGGTCGGGACT 59.683 55.000 0.00 0.00 0.00 3.85
812 814 1.289800 GCGAGAAAAGTGGTCGGGAC 61.290 60.000 0.00 0.00 34.23 4.46
813 815 1.005394 GCGAGAAAAGTGGTCGGGA 60.005 57.895 0.00 0.00 34.23 5.14
814 816 2.380410 CGCGAGAAAAGTGGTCGGG 61.380 63.158 0.00 0.00 39.76 5.14
815 817 3.011760 GCGCGAGAAAAGTGGTCGG 62.012 63.158 12.10 0.00 34.23 4.79
816 818 2.470286 GCGCGAGAAAAGTGGTCG 59.530 61.111 12.10 0.00 36.77 4.79
817 819 2.470286 CGCGCGAGAAAAGTGGTC 59.530 61.111 28.94 0.00 0.00 4.02
818 820 3.712881 GCGCGCGAGAAAAGTGGT 61.713 61.111 37.18 0.00 0.00 4.16
819 821 3.354499 GAGCGCGCGAGAAAAGTGG 62.354 63.158 37.18 0.00 0.00 4.00
820 822 2.094724 GAGCGCGCGAGAAAAGTG 59.905 61.111 37.18 0.23 0.00 3.16
821 823 2.209064 TAGGAGCGCGCGAGAAAAGT 62.209 55.000 37.18 12.72 0.00 2.66
822 824 0.872021 ATAGGAGCGCGCGAGAAAAG 60.872 55.000 37.18 2.07 0.00 2.27
823 825 0.459585 AATAGGAGCGCGCGAGAAAA 60.460 50.000 37.18 15.83 0.00 2.29
824 826 0.459585 AAATAGGAGCGCGCGAGAAA 60.460 50.000 37.18 14.61 0.00 2.52
825 827 0.870307 GAAATAGGAGCGCGCGAGAA 60.870 55.000 37.18 13.80 0.00 2.87
826 828 1.299165 GAAATAGGAGCGCGCGAGA 60.299 57.895 37.18 13.20 0.00 4.04
827 829 1.299468 AGAAATAGGAGCGCGCGAG 60.299 57.895 37.18 8.39 0.00 5.03
828 830 1.588932 CAGAAATAGGAGCGCGCGA 60.589 57.895 37.18 13.36 0.00 5.87
829 831 2.923854 CAGAAATAGGAGCGCGCG 59.076 61.111 28.44 28.44 0.00 6.86
830 832 1.826299 GAGCAGAAATAGGAGCGCGC 61.826 60.000 26.66 26.66 0.00 6.86
831 833 0.249238 AGAGCAGAAATAGGAGCGCG 60.249 55.000 0.00 0.00 31.93 6.86
832 834 1.496934 GAGAGCAGAAATAGGAGCGC 58.503 55.000 0.00 0.00 0.00 5.92
833 835 1.410517 TGGAGAGCAGAAATAGGAGCG 59.589 52.381 0.00 0.00 0.00 5.03
876 878 0.478507 GGAGGAGGAGAGAGAGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
877 879 0.478507 GGGAGGAGGAGAGAGAGGAG 59.521 65.000 0.00 0.00 0.00 3.69
878 880 0.253868 TGGGAGGAGGAGAGAGAGGA 60.254 60.000 0.00 0.00 0.00 3.71
879 881 0.859760 ATGGGAGGAGGAGAGAGAGG 59.140 60.000 0.00 0.00 0.00 3.69
880 882 1.782752 AGATGGGAGGAGGAGAGAGAG 59.217 57.143 0.00 0.00 0.00 3.20
881 883 1.780309 GAGATGGGAGGAGGAGAGAGA 59.220 57.143 0.00 0.00 0.00 3.10
882 884 1.203050 GGAGATGGGAGGAGGAGAGAG 60.203 61.905 0.00 0.00 0.00 3.20
883 885 0.856982 GGAGATGGGAGGAGGAGAGA 59.143 60.000 0.00 0.00 0.00 3.10
884 886 0.539438 CGGAGATGGGAGGAGGAGAG 60.539 65.000 0.00 0.00 0.00 3.20
885 887 1.539165 CGGAGATGGGAGGAGGAGA 59.461 63.158 0.00 0.00 0.00 3.71
886 888 2.206536 GCGGAGATGGGAGGAGGAG 61.207 68.421 0.00 0.00 0.00 3.69
1174 1196 2.562912 GCCGTAGTCGTCGTCCAA 59.437 61.111 0.00 0.00 35.01 3.53
1176 1198 4.527157 CCGCCGTAGTCGTCGTCC 62.527 72.222 0.00 0.00 36.71 4.79
1361 1392 2.983296 AGAATGGAGAGGGAGGGTATG 58.017 52.381 0.00 0.00 0.00 2.39
1362 1393 3.211000 AGAAGAATGGAGAGGGAGGGTAT 59.789 47.826 0.00 0.00 0.00 2.73
1363 1394 2.592512 AGAAGAATGGAGAGGGAGGGTA 59.407 50.000 0.00 0.00 0.00 3.69
1364 1395 1.367848 AGAAGAATGGAGAGGGAGGGT 59.632 52.381 0.00 0.00 0.00 4.34
1365 1396 2.188818 AGAAGAATGGAGAGGGAGGG 57.811 55.000 0.00 0.00 0.00 4.30
1366 1397 3.383223 AGAAGAAGAATGGAGAGGGAGG 58.617 50.000 0.00 0.00 0.00 4.30
1367 1398 4.716287 AGAAGAAGAAGAATGGAGAGGGAG 59.284 45.833 0.00 0.00 0.00 4.30
1368 1399 4.693420 AGAAGAAGAAGAATGGAGAGGGA 58.307 43.478 0.00 0.00 0.00 4.20
1369 1400 5.189539 AGAAGAAGAAGAAGAATGGAGAGGG 59.810 44.000 0.00 0.00 0.00 4.30
1370 1401 6.298441 AGAAGAAGAAGAAGAATGGAGAGG 57.702 41.667 0.00 0.00 0.00 3.69
1371 1402 6.818142 GGAAGAAGAAGAAGAAGAATGGAGAG 59.182 42.308 0.00 0.00 0.00 3.20
1372 1403 6.500049 AGGAAGAAGAAGAAGAAGAATGGAGA 59.500 38.462 0.00 0.00 0.00 3.71
1373 1404 6.710278 AGGAAGAAGAAGAAGAAGAATGGAG 58.290 40.000 0.00 0.00 0.00 3.86
1382 1413 3.768878 ACGGAGAGGAAGAAGAAGAAGA 58.231 45.455 0.00 0.00 0.00 2.87
1396 1427 1.215647 CCACGGGAAGAACGGAGAG 59.784 63.158 0.00 0.00 35.23 3.20
1421 1456 1.062685 CCACACGAGACGAGATCGG 59.937 63.158 7.22 5.21 44.36 4.18
1460 1495 1.153489 CACTCCGAGTCCCTGCATG 60.153 63.158 0.00 0.00 0.00 4.06
1592 1634 6.873076 GGAAATGACAATGGTTCAAAATGCTA 59.127 34.615 0.00 0.00 0.00 3.49
1593 1635 5.702209 GGAAATGACAATGGTTCAAAATGCT 59.298 36.000 0.00 0.00 0.00 3.79
1594 1636 5.702209 AGGAAATGACAATGGTTCAAAATGC 59.298 36.000 0.00 0.00 0.00 3.56
1624 1666 5.375544 TCGTCGATCGAATTGAAAATGAG 57.624 39.130 21.31 0.28 45.98 2.90
1642 1684 0.179189 CTTGAAAGGCGGCATTCGTC 60.179 55.000 19.95 6.47 45.07 4.20
1668 1712 1.446907 CTGCCACAGAGAACCATGAC 58.553 55.000 0.00 0.00 32.44 3.06
1935 1982 1.305213 GGCATGGGGGCAGAAGAAA 60.305 57.895 0.00 0.00 42.77 2.52
1982 2029 1.137479 GATGTTGGCATGGGTTGATGG 59.863 52.381 0.00 0.00 35.07 3.51
2031 2101 3.245797 TCGCTTCTTTCTGATCAACTCG 58.754 45.455 0.00 0.00 0.00 4.18
2082 2155 7.829725 TCTGTTTGCATTTGAGTTAGCATAAT 58.170 30.769 0.00 0.00 36.80 1.28
2136 2210 6.235231 TCATCAGTATAACAGTTTCCTCCC 57.765 41.667 0.00 0.00 0.00 4.30
2158 2232 6.648310 TGACAGAATCAACACAGAGAGAAATC 59.352 38.462 0.00 0.00 33.02 2.17
2159 2233 6.528321 TGACAGAATCAACACAGAGAGAAAT 58.472 36.000 0.00 0.00 33.02 2.17
2160 2234 5.917462 TGACAGAATCAACACAGAGAGAAA 58.083 37.500 0.00 0.00 33.02 2.52
2161 2235 5.535753 TGACAGAATCAACACAGAGAGAA 57.464 39.130 0.00 0.00 33.02 2.87
2162 2236 5.011431 ACATGACAGAATCAACACAGAGAGA 59.989 40.000 0.00 0.00 41.93 3.10
2163 2237 5.120363 CACATGACAGAATCAACACAGAGAG 59.880 44.000 0.00 0.00 41.93 3.20
2169 2243 3.818387 CTGCACATGACAGAATCAACAC 58.182 45.455 13.15 0.00 41.93 3.32
2174 2248 2.731341 GCAAGCTGCACATGACAGAATC 60.731 50.000 20.00 6.60 44.26 2.52
2286 2360 5.185454 TGAAACTATCATACTTGCTGTGGG 58.815 41.667 0.00 0.00 31.50 4.61
2339 2413 2.277084 GCGGTTGGTAGTTGTATCTGG 58.723 52.381 0.00 0.00 0.00 3.86
2382 2456 0.179009 AGTTGTCAGCACTGCCACAT 60.179 50.000 0.00 0.00 0.00 3.21
2586 2660 1.019278 GCAATCGACTGCGGGAAGAA 61.019 55.000 1.88 0.00 38.28 2.52
2596 2670 1.448540 CCCGAGCAAGCAATCGACT 60.449 57.895 5.43 0.00 41.40 4.18
2602 2676 1.810151 GATAAACACCCGAGCAAGCAA 59.190 47.619 0.00 0.00 0.00 3.91
2603 2677 1.003118 AGATAAACACCCGAGCAAGCA 59.997 47.619 0.00 0.00 0.00 3.91
2604 2678 1.398390 CAGATAAACACCCGAGCAAGC 59.602 52.381 0.00 0.00 0.00 4.01
2605 2679 2.699954 ACAGATAAACACCCGAGCAAG 58.300 47.619 0.00 0.00 0.00 4.01
2703 2777 4.530161 ACTCCTCTGCAATGAGAAGTAGTT 59.470 41.667 12.31 0.00 29.81 2.24
2748 2822 1.016130 ACGCGCACAGATCAAGAAGG 61.016 55.000 5.73 0.00 0.00 3.46
2759 2833 2.030412 ACATTCAGGACGCGCACA 59.970 55.556 5.73 0.00 0.00 4.57
2859 2968 1.732941 TTACCACTAGCAACATGCCG 58.267 50.000 0.00 0.00 46.52 5.69
2893 3002 8.677300 CCAAAAGGATAATAACCATGATATCGG 58.323 37.037 0.00 0.00 0.00 4.18
3079 3208 1.841450 CCGTCTCTTTCGCATACCTC 58.159 55.000 0.00 0.00 0.00 3.85
3109 3238 2.231478 TCTAGCTGTTTTCCACCTCTCG 59.769 50.000 0.00 0.00 0.00 4.04
3241 3370 4.815108 GCCCCATCCGTCCCAACC 62.815 72.222 0.00 0.00 0.00 3.77
3247 3379 0.034863 TTTTACCAGCCCCATCCGTC 60.035 55.000 0.00 0.00 0.00 4.79
3270 3402 1.633432 TCATCATGTCGGGGAGGTTTT 59.367 47.619 0.00 0.00 0.00 2.43
3298 3430 4.891566 CCGTCTGGGTTCTCTTCG 57.108 61.111 0.00 0.00 0.00 3.79
3331 3463 4.344102 CCGGTCTTGTCTCCTATTTCCATA 59.656 45.833 0.00 0.00 0.00 2.74
3490 3628 1.509923 GTGCTCTTTGGCCATGCTC 59.490 57.895 6.09 6.56 0.00 4.26
3532 3670 1.446272 GTCCTTGAAGGCGACCTCG 60.446 63.158 6.30 0.00 43.27 4.63
3541 3679 3.839293 CGTCAGAGTTAGGTCCTTGAAG 58.161 50.000 0.00 0.00 0.00 3.02
3599 3737 0.034767 CCAGGCATGAGCTTTCCTGA 60.035 55.000 19.56 0.00 46.80 3.86
3736 3874 2.277692 TACGCACGAATCGGCTCG 60.278 61.111 7.80 9.54 44.50 5.03
3745 3883 3.547413 CGATAATCCTCTTGTACGCACGA 60.547 47.826 0.00 0.00 0.00 4.35
3871 4010 5.801531 TGTGTTAGCTGAAAAGGTAGAGA 57.198 39.130 0.00 0.00 0.00 3.10
4242 4386 4.189231 GAGGCAAACATATACCGTTCTGT 58.811 43.478 0.00 0.00 0.00 3.41
4272 4419 5.367945 TTGTTTTAGTCAGGGAGAAGTGT 57.632 39.130 0.00 0.00 0.00 3.55
4275 4422 4.216472 GGCTTTGTTTTAGTCAGGGAGAAG 59.784 45.833 0.00 0.00 0.00 2.85
4385 4537 7.612668 GAAGTATTCTTCCACCTTCTTTACC 57.387 40.000 0.76 0.00 43.23 2.85
4463 4615 0.877649 CGATGCCCTCCAAGATGTCG 60.878 60.000 0.00 0.00 0.00 4.35
4539 4691 1.289109 ACGTCATAGCCGTTGTGCAC 61.289 55.000 10.75 10.75 34.28 4.57
4620 4772 0.605589 CCAGGAGAAGAAGCGTCTGT 59.394 55.000 1.94 0.00 33.05 3.41
4733 4885 2.893637 CGGTTGGACAGATCTAAGGTG 58.106 52.381 0.00 0.00 0.00 4.00
4748 4900 3.353836 CCGGGAGTGTTGCGGTTG 61.354 66.667 0.00 0.00 0.00 3.77
4843 4995 4.518249 GAGATGAACCCGGAGAAGAATTT 58.482 43.478 0.73 0.00 0.00 1.82
4855 5007 3.606687 ACATAAACACCGAGATGAACCC 58.393 45.455 0.00 0.00 0.00 4.11
4857 5009 5.637810 TGAAGACATAAACACCGAGATGAAC 59.362 40.000 0.00 0.00 0.00 3.18
5060 5370 2.825264 GGATTCAGGGCTCCCTCG 59.175 66.667 4.06 1.54 46.28 4.63
5064 5374 0.326264 ATATGCGGATTCAGGGCTCC 59.674 55.000 0.00 0.00 0.00 4.70
5077 5387 3.005261 AGAACTGGTCAGCTAGATATGCG 59.995 47.826 0.00 0.00 35.28 4.73
5687 6103 5.240403 GCTCATTTATGTCAGGGAGGAATTC 59.760 44.000 0.00 0.00 0.00 2.17
5756 6172 1.377202 CCGGTGTAGCTGCAACCAT 60.377 57.895 14.66 0.00 0.00 3.55
5880 6296 0.670546 TGCAGAAGAAGGCTACGCAC 60.671 55.000 0.00 0.00 0.00 5.34
6035 6460 8.167985 CACAACAACAAAAAGGTAAATCTGTTG 58.832 33.333 10.34 10.34 45.69 3.33
6279 6710 6.069673 TGTGGAAGTATGATGAATGGTTACCT 60.070 38.462 2.07 0.00 0.00 3.08
6282 6713 6.597672 GTGTGTGGAAGTATGATGAATGGTTA 59.402 38.462 0.00 0.00 0.00 2.85
6379 6814 1.879380 CTTGTCCAAGCATGTTTCCGA 59.121 47.619 0.00 0.00 0.00 4.55
6477 6922 1.625818 CTCAAGGGGAGTACAAGCTGT 59.374 52.381 0.00 0.00 38.90 4.40
6584 7032 6.150474 TGAAAATTAGGCCTTACTGCTGTAAC 59.850 38.462 12.58 4.21 35.14 2.50
6624 7072 0.460284 CCGGGTCTCAGGTCAAATCG 60.460 60.000 0.00 0.00 0.00 3.34
6897 7345 0.028242 CGTCGACCCTGAAGATCTCG 59.972 60.000 10.58 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.